Query 044241
Match_columns 356
No_of_seqs 128 out of 1120
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 22:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044241.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044241hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtua1 f.24.1.1 (A:14-551) Ba 12.5 4.8E+02 0.035 23.7 12.5 34 137-170 323-356 (538)
2 d1j4na_ f.19.1.1 (A:) Aquapori 10.9 3.3E+02 0.024 21.7 7.6 19 147-165 100-118 (249)
3 d1ymga1 f.19.1.1 (A:6-239) Aqu 8.2 3.2E+02 0.023 21.6 6.3 18 148-165 86-103 (234)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 8.2 1.2E+02 0.009 17.4 2.4 14 63-76 18-31 (37)
5 d1tlha_ a.150.1.1 (A:) Anti-si 7.4 15 0.0011 26.0 -2.4 13 14-26 73-85 (89)
6 d1zava1 d.58.62.1 (A:1-177) Ri 6.9 1.2E+02 0.0084 23.5 2.6 29 135-163 128-156 (177)
7 d1zcea1 b.122.1.8 (A:2-147) Hy 5.4 1E+02 0.0074 23.6 1.3 16 124-139 34-49 (146)
8 d1ofcx1 a.4.1.3 (X:799-850) SA 5.1 91 0.0066 19.7 0.6 13 284-296 37-49 (52)
9 d2gbsa1 b.122.1.8 (A:2-137) Hy 4.8 1.2E+02 0.0087 22.9 1.3 16 124-139 33-48 (136)
10 d1h2sa_ f.13.1.1 (A:) Sensory 4.7 2.7E+02 0.02 22.1 3.8 29 272-300 13-41 (225)
No 1
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.45 E-value=4.8e+02 Score=23.74 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=27.3
Q ss_pred cccCCChHHHHHHHHHhhhhhhhHHHHHHHHHhh
Q 044241 137 HYMKIPPKSMFIVQLVGTVVASSVYFGTAWWLLG 170 (356)
Q Consensus 137 ~y~k~pPR~~f~aQliGtivg~~v~~~v~~~~l~ 170 (356)
+..+.||..+......-.+++.-....+++|+..
T Consensus 323 f~~g~~~~~~~~f~~~T~~IaiPs~i~vfnwl~T 356 (538)
T d3dtua1 323 YTAGLSLTQQSYFMMATMVIAVPTGIKIFSWIAT 356 (538)
T ss_dssp TTSSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899988888877778888888888988754
No 2
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.95 E-value=3.3e+02 Score=21.74 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=14.9
Q ss_pred HHHHHHhhhhhhhHHHHHH
Q 044241 147 FIVQLVGTVVASSVYFGTA 165 (356)
Q Consensus 147 f~aQliGtivg~~v~~~v~ 165 (356)
..+|++|.++|+.+...++
T Consensus 100 i~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 100 IIAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeHHHHHHHHHHhhheeec
Confidence 3689999999988776664
No 3
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.24 E-value=3.2e+02 Score=21.64 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=15.4
Q ss_pred HHHHHhhhhhhhHHHHHH
Q 044241 148 IVQLVGTVVASSVYFGTA 165 (356)
Q Consensus 148 ~aQliGtivg~~v~~~v~ 165 (356)
.+|++|.++|+.+.+.++
T Consensus 86 ~aQ~lGa~~ga~l~~~~~ 103 (234)
T d1ymga1 86 VAQLLGAVAGAAVLYSVT 103 (234)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHHHHHHHHc
Confidence 799999999998877664
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.19 E-value=1.2e+02 Score=17.44 Aligned_cols=14 Identities=50% Similarity=0.793 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHh
Q 044241 63 WWGLLLACLIALGF 76 (356)
Q Consensus 63 ~w~~~lai~l~~v~ 76 (356)
+|++++..+++..|
T Consensus 18 y~GlLlifvl~vLF 31 (37)
T d2axtl1 18 YLGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666555
No 5
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=7.44 E-value=15 Score=26.00 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=9.8
Q ss_pred CCCCcChhHHHhh
Q 044241 14 GDKFADVHTRMMR 26 (356)
Q Consensus 14 ~~~~~D~h~~lm~ 26 (356)
.+.++|+|+.+|-
T Consensus 73 neG~~di~~~l~m 85 (89)
T d1tlha_ 73 NEGFEGVYRYLEM 85 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 4566799998874
No 6
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=6.90 E-value=1.2e+02 Score=23.55 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=22.8
Q ss_pred cccccCCChHHHHHHHHHhhhhhhhHHHH
Q 044241 135 LGHYMKIPPKSMFIVQLVGTVVASSVYFG 163 (356)
Q Consensus 135 lG~y~k~pPR~~f~aQliGtivg~~v~~~ 163 (356)
+-.+.++|.|...++|++|.+-+..-+..
T Consensus 128 i~~la~LPs~eel~a~l~~~L~ap~~~l~ 156 (177)
T d1zava1 128 VENIAKLPSKEELYAMLVGRVKAPITGLV 156 (177)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhHHHHHH
Confidence 34567899999999999999877665543
No 7
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.41 E-value=1e+02 Score=23.58 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=14.2
Q ss_pred HHHHHHhhhhcccccc
Q 044241 124 AQALAFLSDFKLGHYM 139 (356)
Q Consensus 124 ~qa~~~~~DlKlG~y~ 139 (356)
.||.+++.|+|.|.+.
T Consensus 34 yqArn~lr~Mk~GD~~ 49 (146)
T d1zcea1 34 YQARNNMRAMKIGDKG 49 (146)
T ss_dssp HHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHhccCCCEE
Confidence 6999999999999754
No 8
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.12 E-value=91 Score=19.69 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=7.6
Q ss_pred HHhhChhhhhhhh
Q 044241 284 IYRKYKAWWARHT 296 (356)
Q Consensus 284 ~rr~~~~w~~kYn 296 (356)
+++|....|+||+
T Consensus 37 V~~Y~~vFw~ry~ 49 (52)
T d1ofcx1 37 VIEYNAVFWERCT 49 (52)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHH
Confidence 4555566666665
No 9
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=4.81 E-value=1.2e+02 Score=22.87 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=13.8
Q ss_pred HHHHHHhhhhcccccc
Q 044241 124 AQALAFLSDFKLGHYM 139 (356)
Q Consensus 124 ~qa~~~~~DlKlG~y~ 139 (356)
.||.+++.|+|.|...
T Consensus 33 yqArn~mr~M~~GD~~ 48 (136)
T d2gbsa1 33 HSAKLHMVAMRRGDRA 48 (136)
T ss_dssp HHHHHHHHHCCTTCEE
T ss_pred HHHHHHHHHhccCCEE
Confidence 6999999999999653
No 10
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=4.75 E-value=2.7e+02 Score=22.07 Aligned_cols=29 Identities=17% Similarity=-0.080 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHhhChhhhhhhhhhhh
Q 044241 272 TWGVVGIFFNYYIYRKYKAWWARHTYILS 300 (356)
Q Consensus 272 ~~~~vG~~~~~~~rr~~~~w~~kYnyvla 300 (356)
..|..+.++-++.+|+.+.-++++.++.+
T Consensus 13 ~~m~~~tv~F~~~~~~~~~~~r~~~~~~~ 41 (225)
T d1h2sa_ 13 IGMLVGTLAFAWAGRDAGSGERRYYVTLV 41 (225)
T ss_dssp HHHHHHHHHHHHHTTTCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccchhhHHHH
Confidence 45667777666777776666566665443
Done!