Query 044242
Match_columns 247
No_of_seqs 198 out of 1864
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 4.4E-54 9.5E-59 376.0 24.2 235 1-247 48-290 (452)
2 PLN02533 probable purple acid 100.0 1.6E-52 3.4E-57 375.7 26.6 233 1-246 47-280 (427)
3 cd00839 MPP_PAPs purple acid p 99.9 4.4E-26 9.5E-31 196.3 15.6 146 96-246 2-151 (294)
4 PF09423 PhoD: PhoD-like phosp 99.9 9.9E-23 2.1E-27 185.4 17.2 235 4-245 4-314 (453)
5 COG3540 PhoD Phosphodiesterase 99.9 1E-21 2.3E-26 171.9 13.4 231 7-245 46-353 (522)
6 cd07378 MPP_ACP5 Homo sapiens 99.8 1.1E-19 2.3E-24 155.3 10.4 137 99-246 1-166 (277)
7 cd07395 MPP_CSTP1 Homo sapiens 99.8 1.3E-18 2.8E-23 147.5 9.5 136 97-245 3-161 (262)
8 cd07396 MPP_Nbla03831 Homo sap 99.7 1.1E-16 2.5E-21 136.1 11.4 130 99-245 1-176 (267)
9 cd07402 MPP_GpdQ Enterobacter 99.6 1E-15 2.2E-20 127.9 10.5 125 100-245 1-142 (240)
10 PRK11148 cyclic 3',5'-adenosin 99.6 2.4E-14 5.2E-19 122.3 10.7 134 87-245 5-155 (275)
11 PTZ00422 glideosome-associated 99.5 4.7E-14 1E-18 124.2 10.6 139 96-245 24-210 (394)
12 cd00842 MPP_ASMase acid sphing 99.5 3.5E-14 7.6E-19 122.5 7.4 144 102-245 41-210 (296)
13 cd07401 MPP_TMEM62_N Homo sapi 99.5 2.1E-13 4.5E-18 115.4 11.6 139 101-245 2-163 (256)
14 cd07399 MPP_YvnB Bacillus subt 99.4 4.7E-13 1E-17 110.2 8.0 72 99-174 1-80 (214)
15 cd08163 MPP_Cdc1 Saccharomyces 99.4 7.9E-13 1.7E-17 111.6 8.9 116 115-244 35-159 (257)
16 cd07383 MPP_Dcr2 Saccharomyces 99.0 7.3E-10 1.6E-14 90.1 8.2 73 98-174 2-87 (199)
17 KOG2679 Purple (tartrate-resis 99.0 5.3E-10 1.2E-14 92.4 5.8 89 86-178 33-128 (336)
18 COG1409 Icc Predicted phosphoh 99.0 2.2E-09 4.7E-14 91.9 9.9 128 99-245 1-138 (301)
19 TIGR03767 P_acnes_RR metalloph 98.9 6.2E-09 1.3E-13 93.6 9.2 41 205-245 290-336 (496)
20 PF00149 Metallophos: Calcineu 98.9 4.3E-09 9.3E-14 81.4 6.5 74 99-177 1-79 (200)
21 cd07389 MPP_PhoD Bacillus subt 98.9 1.9E-08 4.1E-13 83.4 10.2 142 100-242 1-187 (228)
22 TIGR03729 acc_ester putative p 98.7 5.6E-08 1.2E-12 81.3 8.7 69 100-176 1-74 (239)
23 cd07392 MPP_PAE1087 Pyrobaculu 98.6 1.5E-07 3.3E-12 75.2 8.5 107 101-237 1-115 (188)
24 TIGR03768 RPA4764 metallophosp 98.6 1.7E-07 3.8E-12 83.8 9.4 41 205-245 291-345 (492)
25 PRK11340 phosphodiesterase Yae 98.6 1.1E-07 2.5E-12 81.0 8.0 75 97-176 48-125 (271)
26 KOG3662 Cell division control 98.6 2E-07 4.4E-12 82.3 9.2 117 96-225 46-182 (410)
27 cd07385 MPP_YkuE_C Bacillus su 98.6 1.9E-07 4E-12 77.0 7.2 74 98-177 1-77 (223)
28 cd07400 MPP_YydB Bacillus subt 98.5 1.8E-07 3.8E-12 71.9 5.7 69 101-175 1-80 (144)
29 cd00840 MPP_Mre11_N Mre11 nucl 98.5 4.1E-07 8.8E-12 74.8 7.0 75 100-177 1-90 (223)
30 cd07393 MPP_DR1119 Deinococcus 98.5 2.1E-07 4.6E-12 77.6 5.3 102 125-245 40-159 (232)
31 KOG1432 Predicted DNA repair e 98.4 1.1E-06 2.5E-11 75.2 7.3 78 96-178 51-149 (379)
32 cd00838 MPP_superfamily metall 98.3 1.3E-06 2.8E-11 64.8 6.3 69 102-176 1-71 (131)
33 KOG3770 Acid sphingomyelinase 98.3 2.1E-06 4.5E-11 78.6 7.8 132 115-246 199-356 (577)
34 PF12850 Metallophos_2: Calcin 98.3 1.1E-06 2.3E-11 68.1 5.0 60 99-176 1-60 (156)
35 cd07388 MPP_Tt1561 Thermus the 98.3 2.1E-06 4.6E-11 71.0 7.1 70 97-176 3-75 (224)
36 TIGR00619 sbcd exonuclease Sbc 98.2 2.3E-06 5.1E-11 72.2 6.1 76 99-177 1-89 (253)
37 PRK05340 UDP-2,3-diacylglucosa 98.2 5.5E-06 1.2E-10 69.4 7.5 77 100-176 2-83 (241)
38 TIGR00583 mre11 DNA repair pro 98.2 5E-06 1.1E-10 74.5 7.6 44 98-141 3-57 (405)
39 cd07404 MPP_MS158 Microscilla 98.2 2.3E-06 5E-11 67.4 4.5 67 101-176 1-68 (166)
40 COG0420 SbcD DNA repair exonuc 98.2 4.1E-06 8.8E-11 75.1 6.5 77 99-178 1-90 (390)
41 TIGR00040 yfcE phosphoesterase 98.1 8.4E-06 1.8E-10 63.7 7.1 64 99-176 1-64 (158)
42 cd08166 MPP_Cdc1_like_1 unchar 98.1 7.9E-06 1.7E-10 65.9 6.0 51 125-177 41-94 (195)
43 cd07384 MPP_Cdc1_like Saccharo 98.1 6.3E-06 1.4E-10 65.5 5.4 60 116-178 36-102 (171)
44 cd07397 MPP_DevT Myxococcus xa 98.1 8.9E-06 1.9E-10 67.7 6.4 65 99-178 1-65 (238)
45 cd07379 MPP_239FB Homo sapiens 98.1 6.6E-06 1.4E-10 62.6 5.3 63 100-177 1-64 (135)
46 cd08165 MPP_MPPE1 human MPPE1 98.1 7.5E-06 1.6E-10 64.1 5.6 56 119-177 32-90 (156)
47 cd00841 MPP_YfcE Escherichia c 98.1 8E-06 1.7E-10 63.5 5.7 59 100-176 1-59 (155)
48 TIGR01854 lipid_A_lpxH UDP-2,3 98.1 1.5E-05 3.3E-10 66.3 7.5 75 102-176 2-81 (231)
49 PRK10966 exonuclease subunit S 98.0 1E-05 2.3E-10 72.8 5.9 76 99-177 1-88 (407)
50 PHA02546 47 endonuclease subun 98.0 1.9E-05 4.2E-10 69.5 6.7 75 99-176 1-89 (340)
51 PRK09453 phosphodiesterase; Pr 97.9 3.1E-05 6.7E-10 62.0 6.8 73 99-176 1-76 (182)
52 COG1408 Predicted phosphohydro 97.9 7.7E-05 1.7E-09 64.0 8.8 75 96-177 42-119 (284)
53 PHA02239 putative protein phos 97.8 6.8E-05 1.5E-09 62.6 6.4 67 100-176 2-73 (235)
54 cd07423 MPP_PrpE Bacillus subt 97.8 7.9E-05 1.7E-09 62.1 6.9 66 100-175 2-79 (234)
55 cd07391 MPP_PF1019 Pyrococcus 97.7 5.3E-05 1.1E-09 60.1 5.0 48 125-177 40-89 (172)
56 PRK00166 apaH diadenosine tetr 97.7 0.0001 2.2E-09 62.9 6.6 65 100-176 2-69 (275)
57 cd07424 MPP_PrpA_PrpB PrpA and 97.7 8.8E-05 1.9E-09 60.7 5.6 63 100-176 2-67 (207)
58 PRK13625 bis(5'-nucleosyl)-tet 97.6 0.00023 5E-09 59.8 6.8 66 100-175 2-78 (245)
59 cd07425 MPP_Shelphs Shewanella 97.6 0.00018 3.8E-09 59.0 5.9 65 102-176 1-80 (208)
60 PRK09968 serine/threonine-spec 97.5 0.00022 4.9E-09 58.8 6.2 62 100-175 16-80 (218)
61 PRK11439 pphA serine/threonine 97.5 0.00022 4.8E-09 58.8 6.0 62 100-175 18-82 (218)
62 cd07413 MPP_PA3087 Pseudomonas 97.5 0.00028 6.2E-09 58.4 6.5 66 101-176 1-76 (222)
63 cd07394 MPP_Vps29 Homo sapiens 97.5 0.00026 5.6E-09 56.6 6.0 62 100-176 1-65 (178)
64 cd07386 MPP_DNA_pol_II_small_a 97.5 0.00033 7.2E-09 58.7 6.7 75 102-176 2-94 (243)
65 TIGR00024 SbcD_rel_arch putati 97.4 0.00045 9.7E-09 57.3 6.1 72 99-176 15-102 (225)
66 PRK04036 DNA polymerase II sma 97.4 0.0008 1.7E-08 62.4 8.3 81 96-176 241-343 (504)
67 cd07390 MPP_AQ1575 Aquifex aeo 97.3 0.00059 1.3E-08 53.9 6.2 51 117-177 33-83 (168)
68 cd07403 MPP_TTHA0053 Thermus t 97.3 0.00028 6.1E-09 53.3 3.6 58 102-176 1-58 (129)
69 cd07422 MPP_ApaH Escherichia c 97.3 0.00082 1.8E-08 56.8 6.8 63 102-176 2-67 (257)
70 cd08164 MPP_Ted1 Saccharomyces 97.2 0.00074 1.6E-08 54.5 5.7 59 116-178 35-113 (193)
71 cd07398 MPP_YbbF-LpxH Escheric 97.1 0.0013 2.7E-08 53.9 6.5 74 102-177 1-83 (217)
72 cd07421 MPP_Rhilphs Rhilph pho 97.1 0.0015 3.2E-08 56.0 6.8 67 100-176 3-80 (304)
73 PF14582 Metallophos_3: Metall 97.1 0.00026 5.6E-09 57.9 2.1 71 98-175 5-101 (255)
74 cd00144 MPP_PPP_family phospho 97.1 0.0013 2.9E-08 54.0 6.3 64 103-176 2-68 (225)
75 COG0622 Predicted phosphoester 97.0 0.0018 4E-08 51.3 6.1 65 99-177 2-66 (172)
76 cd00844 MPP_Dbr1_N Dbr1 RNA la 97.0 0.001 2.2E-08 56.4 4.7 74 101-176 1-86 (262)
77 PF00041 fn3: Fibronectin type 96.8 0.004 8.7E-08 42.4 5.9 66 3-78 6-75 (85)
78 TIGR00668 apaH bis(5'-nucleosy 96.8 0.0031 6.8E-08 53.7 6.0 64 100-175 2-68 (279)
79 cd00845 MPP_UshA_N_like Escher 96.7 0.003 6.5E-08 53.0 5.4 73 99-178 1-84 (252)
80 cd07420 MPP_RdgC Drosophila me 96.6 0.0073 1.6E-07 52.7 7.1 67 100-176 52-123 (321)
81 COG2129 Predicted phosphoester 96.6 0.0088 1.9E-07 49.0 6.8 73 98-175 3-76 (226)
82 smart00156 PP2Ac Protein phosp 96.2 0.016 3.6E-07 49.4 7.0 67 100-176 29-99 (271)
83 cd07416 MPP_PP2B PP2B, metallo 96.2 0.018 3.8E-07 50.0 7.2 67 100-176 44-114 (305)
84 COG1407 Predicted ICC-like pho 96.1 0.022 4.7E-07 47.2 6.6 75 99-177 20-111 (235)
85 cd07418 MPP_PP7 PP7, metalloph 96.0 0.019 4.1E-07 51.1 6.6 67 100-176 67-138 (377)
86 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.9 0.025 5.5E-07 48.6 6.8 67 100-176 43-113 (285)
87 KOG2310 DNA repair exonuclease 95.9 0.019 4.2E-07 52.5 6.1 44 97-141 12-67 (646)
88 COG2908 Uncharacterized protei 95.9 0.02 4.4E-07 47.3 5.7 70 103-176 2-80 (237)
89 cd07414 MPP_PP1_PPKL PP1, PPKL 95.9 0.029 6.3E-07 48.4 6.9 67 100-176 51-121 (293)
90 cd07419 MPP_Bsu1_C Arabidopsis 95.7 0.035 7.7E-07 48.3 7.0 66 101-176 50-127 (311)
91 cd07406 MPP_CG11883_N Drosophi 95.7 0.021 4.5E-07 48.3 5.3 73 99-178 1-85 (257)
92 cd07417 MPP_PP5_C PP5, C-termi 95.7 0.036 7.7E-07 48.4 6.7 67 100-176 61-132 (316)
93 cd07408 MPP_SA0022_N Staphyloc 95.6 0.03 6.4E-07 47.3 6.1 75 99-178 1-84 (257)
94 PTZ00239 serine/threonine prot 95.6 0.041 8.8E-07 47.7 6.8 66 101-176 45-114 (303)
95 PTZ00480 serine/threonine-prot 95.5 0.042 9E-07 48.0 6.5 67 100-176 60-130 (320)
96 TIGR00282 metallophosphoestera 95.5 0.077 1.7E-06 45.1 7.9 111 99-223 1-115 (266)
97 PRK09419 bifunctional 2',3'-cy 95.2 0.042 9.2E-07 56.2 6.5 75 96-178 658-738 (1163)
98 cd07387 MPP_PolD2_C PolD2 (DNA 95.2 0.34 7.5E-06 41.0 10.9 112 126-242 42-175 (257)
99 cd07382 MPP_DR1281 Deinococcus 95.1 0.13 2.8E-06 43.5 8.2 106 100-223 1-114 (255)
100 PTZ00244 serine/threonine-prot 95.1 0.061 1.3E-06 46.4 6.2 66 101-176 54-123 (294)
101 cd00063 FN3 Fibronectin type 3 95.0 0.16 3.4E-06 34.0 7.2 64 5-78 9-76 (93)
102 KOG3947 Phosphoesterases [Gene 95.0 0.049 1.1E-06 45.9 5.1 66 97-178 60-128 (305)
103 cd07380 MPP_CWF19_N Schizosacc 95.0 0.04 8.6E-07 42.7 4.3 66 102-174 1-68 (150)
104 KOG0196 Tyrosine kinase, EPH ( 95.0 0.073 1.6E-06 51.2 6.7 77 5-92 451-537 (996)
105 cd07410 MPP_CpdB_N Escherichia 94.9 0.044 9.5E-07 46.7 5.0 50 126-178 43-97 (277)
106 cd07411 MPP_SoxB_N Thermus the 94.5 0.062 1.4E-06 45.5 4.9 47 126-178 50-97 (264)
107 cd07412 MPP_YhcR_N Bacillus su 94.4 0.1 2.2E-06 44.9 5.9 74 99-178 1-90 (288)
108 COG4186 Predicted phosphoester 94.3 0.18 4E-06 39.0 6.4 49 119-176 38-86 (186)
109 COG1692 Calcineurin-like phosp 94.0 0.63 1.4E-05 38.8 9.3 111 99-223 1-115 (266)
110 cd07407 MPP_YHR202W_N Saccharo 93.9 0.23 5E-06 42.6 7.1 77 97-177 4-98 (282)
111 COG1311 HYS2 Archaeal DNA poly 93.7 0.2 4.4E-06 45.5 6.5 80 96-177 223-322 (481)
112 COG0737 UshA 5'-nucleotidase/2 93.2 0.25 5.4E-06 46.1 6.6 78 95-178 23-117 (517)
113 smart00060 FN3 Fibronectin typ 92.9 0.53 1.1E-05 30.3 6.3 61 10-78 14-76 (83)
114 PRK09558 ushA bifunctional UDP 91.6 0.29 6.2E-06 46.1 4.8 77 96-178 32-123 (551)
115 PRK11907 bifunctional 2',3'-cy 91.3 0.6 1.3E-05 45.9 6.9 86 90-178 107-215 (814)
116 cd07409 MPP_CD73_N CD73 ecto-5 91.3 0.48 1E-05 40.6 5.6 48 126-178 48-96 (281)
117 KOG4221 Receptor mediating net 91.2 0.37 8E-06 48.4 5.2 29 63-91 678-712 (1381)
118 cd08162 MPP_PhoA_N Synechococc 91.0 0.52 1.1E-05 41.1 5.6 79 99-178 1-93 (313)
119 KOG2863 RNA lariat debranching 90.6 0.61 1.3E-05 41.0 5.5 110 99-223 1-125 (456)
120 cd07405 MPP_UshA_N Escherichia 90.2 0.64 1.4E-05 39.9 5.4 75 99-178 1-89 (285)
121 TIGR01530 nadN NAD pyrophospha 90.1 0.87 1.9E-05 42.9 6.6 55 117-178 41-96 (550)
122 PF13277 YmdB: YmdB-like prote 89.2 1.3 2.8E-05 37.2 6.2 107 102-223 1-112 (253)
123 TIGR01390 CycNucDiestase 2',3' 88.1 0.92 2E-05 43.4 5.3 79 98-178 2-101 (626)
124 PRK09418 bifunctional 2',3'-cy 86.3 2.7 6E-05 41.2 7.5 43 96-139 37-96 (780)
125 KOG0372 Serine/threonine speci 86.0 1.5 3.3E-05 36.6 4.7 66 101-176 45-114 (303)
126 COG1768 Predicted phosphohydro 85.8 1.3 2.9E-05 35.2 4.1 68 101-178 19-88 (230)
127 COG5555 Cytolysin, a secreted 85.7 0.57 1.2E-05 39.9 2.2 117 127-243 127-264 (392)
128 PRK09420 cpdB bifunctional 2', 85.4 1.9 4E-05 41.6 5.8 44 96-140 23-83 (649)
129 PF04042 DNA_pol_E_B: DNA poly 84.2 0.89 1.9E-05 36.8 2.7 78 101-178 1-93 (209)
130 KOG0373 Serine/threonine speci 81.0 5.9 0.00013 32.7 6.1 66 101-176 48-117 (306)
131 PRK09419 bifunctional 2',3'-cy 80.7 3.9 8.5E-05 42.2 6.3 43 97-140 40-99 (1163)
132 KOG4258 Insulin/growth factor 79.7 5.3 0.00012 39.1 6.3 106 2-108 493-624 (1025)
133 KOG0374 Serine/threonine speci 78.5 4.3 9.3E-05 35.7 5.0 67 101-177 61-132 (331)
134 KOG4221 Receptor mediating net 78.1 8.4 0.00018 39.3 7.3 70 8-90 532-611 (1381)
135 KOG0371 Serine/threonine prote 75.5 5.1 0.00011 33.8 4.3 66 101-176 62-131 (319)
136 PTZ00235 DNA polymerase epsilo 74.7 19 0.00041 31.1 7.7 81 96-176 25-122 (291)
137 KOG3513 Neural cell adhesion m 69.9 10 0.00023 38.2 5.8 61 9-78 832-896 (1051)
138 KOG2476 Uncharacterized conser 69.7 4.9 0.00011 36.6 3.2 68 98-173 5-75 (528)
139 cd02852 Isoamylase_N_term Isoa 66.2 8.6 0.00019 28.1 3.5 23 56-78 48-70 (119)
140 cd02856 Glycogen_debranching_e 65.2 9.6 0.00021 27.1 3.5 24 55-78 43-66 (103)
141 PF09294 Interfer-bind: Interf 62.4 8.7 0.00019 27.2 2.9 19 60-78 68-86 (106)
142 cd02853 MTHase_N_term Maltooli 61.4 12 0.00025 25.6 3.3 23 55-78 38-60 (85)
143 cd02860 Pullulanase_N_term Pul 61.4 11 0.00025 26.5 3.3 24 55-78 45-68 (100)
144 PF07353 Uroplakin_II: Uroplak 60.5 10 0.00022 29.5 3.0 33 60-92 103-140 (184)
145 KOG0375 Serine-threonine phosp 53.7 18 0.00039 32.1 3.7 67 101-177 90-160 (517)
146 COG2248 Predicted hydrolase (m 44.7 66 0.0014 27.3 5.6 78 96-177 174-251 (304)
147 TIGR03413 GSH_gloB hydroxyacyl 43.6 52 0.0011 27.5 5.0 46 129-176 120-167 (248)
148 PF10179 DUF2369: Uncharacteri 42.7 24 0.00051 30.6 2.8 18 60-77 16-33 (300)
149 PF02922 CBM_48: Carbohydrate- 42.7 31 0.00067 23.2 3.0 25 55-79 47-73 (85)
150 COG0296 GlgB 1,4-alpha-glucan 37.7 46 0.001 32.0 4.1 36 57-92 73-113 (628)
151 KOG4720 Ethanolamine kinase [L 37.0 11 0.00024 32.9 -0.1 40 205-245 278-322 (391)
152 PF10333 Pga1: GPI-Mannosyltra 34.0 67 0.0015 25.7 3.9 24 55-78 62-85 (180)
153 PF10179 DUF2369: Uncharacteri 31.7 40 0.00088 29.2 2.5 19 61-79 262-280 (300)
154 PF06874 FBPase_2: Firmicute f 31.4 31 0.00067 32.9 1.9 48 119-177 178-225 (640)
155 PF09949 DUF2183: Uncharacteri 30.9 89 0.0019 22.3 3.8 23 99-123 65-87 (100)
156 PRK10241 hydroxyacylglutathion 30.8 1E+02 0.0022 25.7 4.8 45 130-176 122-168 (251)
157 PF00753 Lactamase_B: Metallo- 29.0 92 0.002 23.5 4.0 43 129-171 139-193 (194)
158 PF13205 Big_5: Bacterial Ig-l 28.7 95 0.0021 21.6 3.8 16 64-79 70-85 (107)
159 TIGR03000 plancto_dom_1 Planct 27.9 1E+02 0.0022 20.9 3.4 24 55-78 25-48 (75)
160 cd02855 Glycogen_branching_enz 26.0 1E+02 0.0022 21.4 3.5 21 58-78 59-79 (106)
161 PF13258 DUF4049: Domain of un 25.7 46 0.00099 27.9 1.7 15 164-178 128-142 (318)
162 KOG4419 5' nucleotidase [Nucle 25.3 53 0.0011 31.1 2.2 56 117-177 78-135 (602)
163 PF07305 DUF1454: Protein of u 23.9 76 0.0016 25.5 2.6 23 203-225 155-177 (200)
164 KOG3513 Neural cell adhesion m 23.9 2.1E+02 0.0046 29.3 6.2 63 9-78 627-693 (1051)
165 PF04775 Bile_Hydr_Trans: Acyl 23.9 84 0.0018 23.3 2.8 30 60-89 6-40 (126)
166 KOG0078 GTP-binding protein SE 23.7 1.3E+02 0.0029 24.5 4.0 42 126-173 84-126 (207)
167 cd02861 E_set_proteins_like E 23.1 1E+02 0.0022 20.7 2.8 20 58-79 37-56 (82)
168 KOG0084 GTPase Rab1/YPT1, smal 21.7 2E+02 0.0044 23.4 4.6 55 115-175 69-125 (205)
169 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 21.6 1.8E+02 0.0039 22.8 4.4 45 125-174 75-119 (182)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-54 Score=376.03 Aligned_cols=235 Identities=36% Similarity=0.561 Sum_probs=200.2
Q ss_pred CeeeccCCCCCcEEEEEEeCCCCCCCEEEEeccCCCCce-EEEEEEEEeEe----cccccceEEEEEeCCCCCCCEEEEE
Q 044242 1 VHITQGDLVGKAVIVSWVTVDEPGTNTVVYWSENSKQKE-QAEGKIYTYKY----YNYTSGYIHHCTIRHLEFNTKYYYV 75 (247)
Q Consensus 1 vhl~~~~~~~~~~~V~W~T~~~~~~~~V~y~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~h~v~l~gL~p~t~Y~Yr 75 (247)
|||+++++. ++|.|+|.|.... .+.|+||...+.... .+.+.+..+.+ .++..+++|+|+|++|+|+|+|+||
T Consensus 48 vhlS~~~~~-~~m~VswvT~~~~-~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~~t~YyY~ 125 (452)
T KOG1378|consen 48 VHLSFTDNL-NEMRVSWVTGDGE-ENVVRYGEVKDKLDNSAARGMTEAWTDGYANGWRDSGYIHDAVMKNLEPNTRYYYQ 125 (452)
T ss_pred EEEeccCCC-CcEEEEEeCCCCC-CceEEEeecCCCccccccccceEEEecccccccceeeeEeeeeecCCCCCceEEEE
Confidence 799999975 4999999999864 499999987654221 12343333333 2357899999999999999999999
Q ss_pred eCcC-CcceeEEEeCCCCCCCCCCeEEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHH
Q 044242 76 VGIG-HTERQFWFVTPPEVGPDVPYSFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWG 154 (247)
Q Consensus 76 v~~~-~~s~~~~F~T~p~~~~~~~~~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~ 154 (247)
||++ .||+.++|+|+| ++..+.+|+++||+|.......++..+.+. .++|+|||+||++|+++..+ .+||+|+
T Consensus 126 ~Gs~~~wS~~f~F~t~p--~~~~~~~~~i~GDlG~~~~~~s~~~~~~~~-~k~d~vlhiGDlsYa~~~~n---~~wD~f~ 199 (452)
T KOG1378|consen 126 VGSDLKWSEIFSFKTPP--GQDSPTRAAIFGDMGCTEPYTSTLRNQEEN-LKPDAVLHIGDLSYAMGYSN---WQWDEFG 199 (452)
T ss_pred eCCCCCcccceEeECCC--CccCceeEEEEccccccccccchHhHHhcc-cCCcEEEEecchhhcCCCCc---cchHHHH
Confidence 9998 799999999998 345799999999999987766677766666 47999999999999987542 6999999
Q ss_pred HHHHHhhhcCceEEcCCCCccccCCCCCCcccCcccceeecCCCCCCCCCCCcEEEEEeCcEEEEEEccccCCC--CCCh
Q 044242 155 RFVERSAAYQPWIWTAGNHEIDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWYSIKRASAYIIVLSSYSAYG--KDVL 232 (247)
Q Consensus 155 ~~~~~~~~~~P~~~~~GNHE~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds~~~~~--~~~~ 232 (247)
++++|+++.+|+|++.||||+++.+.. +|.+|.+||.||.+++++..++|||||+|+||||+|+||.+++ +..+
T Consensus 200 r~vEp~As~vPymv~~GNHE~d~~~~~----~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~ 275 (452)
T KOG1378|consen 200 RQVEPIASYVPYMVCSGNHEIDWPPQP----CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTA 275 (452)
T ss_pred hhhhhhhccCceEEecccccccCCCcc----cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccch
Confidence 999999999999999999999876543 5899999999999988888889999999999999999998865 4799
Q ss_pred hHHHHHhhhhhccCC
Q 044242 233 LPTVINKNFKLHNCA 247 (247)
Q Consensus 233 Q~~WL~~dL~~~~r~ 247 (247)
|++||++||+++||+
T Consensus 276 QY~WL~~dL~~v~r~ 290 (452)
T KOG1378|consen 276 QYQWLERDLASVDRK 290 (452)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999999984
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=1.6e-52 Score=375.66 Aligned_cols=233 Identities=34% Similarity=0.582 Sum_probs=200.7
Q ss_pred CeeeccCCCCCcEEEEEEeCCCCCCCEEEEeccCCCCceEEEEEEEEeEe-cccccceEEEEEeCCCCCCCEEEEEeCcC
Q 044242 1 VHITQGDLVGKAVIVSWVTVDEPGTNTVVYWSENSKQKEQAEGKIYTYKY-YNYTSGYIHHCTIRHLEFNTKYYYVVGIG 79 (247)
Q Consensus 1 vhl~~~~~~~~~~~V~W~T~~~~~~~~V~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~v~l~gL~p~t~Y~Yrv~~~ 79 (247)
|||++++ +++|+|+|.|... ..+.|+||++++.++.++.|.+.+|.. ....++++|+|+|+||+|+|+|+|||+.+
T Consensus 47 vhls~~~--~~~m~V~W~T~~~-~~~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T~Y~Yrvg~~ 123 (427)
T PLN02533 47 VHISLVG--PDKMRISWITQDS-IPPSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNTVYYYKCGGP 123 (427)
T ss_pred EEEEEcC--CCeEEEEEECCCC-CCCEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCCEEEEEECCC
Confidence 7999997 4799999999985 479999999998888888888877764 22457899999999999999999999987
Q ss_pred CcceeEEEeCCCCCCCCCCeEEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHH
Q 044242 80 HTERQFWFVTPPEVGPDVPYSFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVER 159 (247)
Q Consensus 80 ~~s~~~~F~T~p~~~~~~~~~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~ 159 (247)
.+|++++|+|+|. ..++||+++||+|.......+++++.+. ++|||||+||++|++. .+.+|++|++.+++
T Consensus 124 ~~s~~~~F~T~p~---~~~~~f~v~GDlG~~~~~~~tl~~i~~~--~pD~vl~~GDl~y~~~----~~~~wd~f~~~i~~ 194 (427)
T PLN02533 124 SSTQEFSFRTPPS---KFPIKFAVSGDLGTSEWTKSTLEHVSKW--DYDVFILPGDLSYANF----YQPLWDTFGRLVQP 194 (427)
T ss_pred CCccceEEECCCC---CCCeEEEEEEeCCCCcccHHHHHHHHhc--CCCEEEEcCccccccc----hHHHHHHHHHHhhh
Confidence 7799999999885 3689999999999766556778888665 8999999999999865 34789999999999
Q ss_pred hhhcCceEEcCCCCccccCCCCCCcccCcccceeecCCCCCCCCCCCcEEEEEeCcEEEEEEccccCCCCCChhHHHHHh
Q 044242 160 SAAYQPWIWTAGNHEIDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWYSIKRASAYIIVLSSYSAYGKDVLLPTVINK 239 (247)
Q Consensus 160 ~~~~~P~~~~~GNHE~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds~~~~~~~~~Q~~WL~~ 239 (247)
+++.+|+|+++||||....+.. ...+|..|.++|.||.++++...+.||||++|++|||+||++.++....+|++||++
T Consensus 195 l~s~~P~m~~~GNHE~~~~~~~-~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~ 273 (427)
T PLN02533 195 LASQRPWMVTHGNHELEKIPIL-HPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLEN 273 (427)
T ss_pred HhhcCceEEeCccccccccccc-cCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHH
Confidence 9999999999999999754311 123577899999999876666678999999999999999999988888999999999
Q ss_pred hhhhccC
Q 044242 240 NFKLHNC 246 (247)
Q Consensus 240 dL~~~~r 246 (247)
+|++++|
T Consensus 274 dL~~~~r 280 (427)
T PLN02533 274 NLKKIDR 280 (427)
T ss_pred HHHhhcc
Confidence 9999876
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.94 E-value=4.4e-26 Score=196.25 Aligned_cols=146 Identities=34% Similarity=0.599 Sum_probs=111.3
Q ss_pred CCCeEEEEEeccCCC-CCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCc
Q 044242 96 DVPYSFGLIGDLGQS-YDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHE 174 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~-~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE 174 (247)
..++||+++||+|.. ..+..++++|.+...+|||||++||++|+.+.. +..+|+.|++.++++.+.+|+++++||||
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~--~~~~~~~~~~~~~~~~~~~P~~~~~GNHD 79 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYN--NGSRWDTFMRQIEPLASYVPYMVTPGNHE 79 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCc--cchhHHHHHHHHHHHHhcCCcEEcCcccc
Confidence 357999999999973 346788898888545899999999999987632 23689999999999999999999999999
Q ss_pred cccCCCCCCcccCcccceeecCCCCCCCCCCCcEEEEEeCcEEEEEEccccCC---CCCChhHHHHHhhhhhccC
Q 044242 175 IDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWYSIKRASAYIIVLSSYSAY---GKDVLLPTVINKNFKLHNC 246 (247)
Q Consensus 175 ~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds~~~~---~~~~~Q~~WL~~dL~~~~r 246 (247)
........ ....+..++.++.......++.||||++|++|||+|||+... ....+|++||+++|+++++
T Consensus 80 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~ 151 (294)
T cd00839 80 ADYNFSFY---KIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDR 151 (294)
T ss_pred cccCCCCc---ccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcc
Confidence 97542110 001111123334333344578899999999999999998654 4579999999999998765
No 4
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.90 E-value=9.9e-23 Score=185.43 Aligned_cols=235 Identities=17% Similarity=0.213 Sum_probs=113.5
Q ss_pred eccCCCCCcEEEEEEeCCC--------CCCCEEEEeccCCC-Cc-eEEEEEEEEeEecccccceEEEEEeCCCCCCCEEE
Q 044242 4 TQGDLVGKAVIVSWVTVDE--------PGTNTVVYWSENSK-QK-EQAEGKIYTYKYYNYTSGYIHHCTIRHLEFNTKYY 73 (247)
Q Consensus 4 ~~~~~~~~~~~V~W~T~~~--------~~~~~V~y~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~h~v~l~gL~p~t~Y~ 73 (247)
+-|+ |...-+|.|.--.+ .....|+|....+. +. ....+...+ .....+.++|.|+||+|+|+|+
T Consensus 4 asGd-p~~~svilWtR~~~~~~~~~~~~~~~~V~~~va~d~~~~~~~~~~~~~~----~~~~d~t~~v~v~gL~p~t~Y~ 78 (453)
T PF09423_consen 4 ASGD-PTPDSVILWTRVTPPAAAGGMPKAPVPVRWEVATDPEFSNVVRSGTVTT----TAERDFTVKVDVTGLQPGTRYY 78 (453)
T ss_dssp EEE----SS-EEEEEE--SBGGTB---SS-EEEEEEEESSTTSSSEEEEEEEEE-----GGGTTEEEEEE-S--TT-EEE
T ss_pred cccC-CCCCEEEEEEEecCcccCCCCCCCcEEEEEEEECCCCccceEEecceec----ccCCCeEeecccCCCCCCceEE
Confidence 4454 55566678988765 12345555554332 22 222333221 1346789999999999999999
Q ss_pred EEeCcC---CcceeEEEeCCCCCCCCCCeEEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCC-C-----
Q 044242 74 YVVGIG---HTERQFWFVTPPEVGPDVPYSFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYP-C----- 144 (247)
Q Consensus 74 Yrv~~~---~~s~~~~F~T~p~~~~~~~~~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~-~----- 144 (247)
||+..+ ..|+.+.|+|+|... ..++||+++++.+........+++|++. .++||+||+||++|++... .
T Consensus 79 Y~~~~~~~~~~s~~g~~rT~p~~~-~~~~r~a~~SC~~~~~~~~~~~~~~a~~-~~~D~~l~lGD~IY~d~~~~~~~~~~ 156 (453)
T PF09423_consen 79 YRFVVDGGGQTSPVGRFRTAPDGD-PDPFRFAFGSCQNYEDGYFPAYRRIAER-DDPDFVLHLGDQIYEDGGGGYGNLSR 156 (453)
T ss_dssp EEEEE--TTEE---EEEE--TT------EEEEEE----CCC---HHHHHHTT--S--SEEEE-S-SS----TTSS--TT-
T ss_pred EEEEEecCCCCCCceEEEcCCCCC-CCceEEEEECCCCcccChHHHHHhhhcc-CCCcEEEEeCCeeeccCCcccccccc
Confidence 999873 467899999997542 3569999999987644346778888885 4899999999999998520 0
Q ss_pred ----------CCCcchhhHH---------HHHHHhhhcCceEEcCCCCccccCCCCCCcc-------cC-----ccccee
Q 044242 145 ----------HDNNRWDTWG---------RFVERSAAYQPWIWTAGNHEIDFYPEIGETV-------PF-----KPYSHR 193 (247)
Q Consensus 145 ----------~~~~~w~~~~---------~~~~~~~~~~P~~~~~GNHE~~~~~~~~~~~-------~~-----~~y~~~ 193 (247)
......+.|. ..++.+.+.+|++.++.+||+.+|....+.. .+ .+++..
T Consensus 157 ~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay 236 (453)
T PF09423_consen 157 RPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAY 236 (453)
T ss_dssp --S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHH
Confidence 0011122222 2356778899999999999997653211110 00 111111
Q ss_pred e-cCCCCC---CCCCCCcEEEEEeCc-EEEEEEcccc--C---C-----------C-----CCChhHHHHHhhhhhcc
Q 044242 194 Y-HVPYRA---SGSTAPFWYSIKRAS-AYIIVLSSYS--A---Y-----------G-----KDVLLPTVINKNFKLHN 245 (247)
Q Consensus 194 f-~~p~~~---~~~~~~~~Ysf~~G~-v~fi~lds~~--~---~-----------~-----~~~~Q~~WL~~dL~~~~ 245 (247)
| .+|... .+.....|++|.+|+ +.|++||+.. + . . .+.+|++||++.|+++.
T Consensus 237 ~e~~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~s~ 314 (453)
T PF09423_consen 237 FEYQPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLASSQ 314 (453)
T ss_dssp HHHS---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH--
T ss_pred HhhcCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhcCC
Confidence 1 133321 122356899999999 9999999931 1 1 1 37999999999998754
No 5
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1e-21 Score=171.94 Aligned_cols=231 Identities=16% Similarity=0.175 Sum_probs=155.5
Q ss_pred CCCCCcEEEEEEeCCC-------CCCCEEEEeccCCCCceEEEEEEEEeEecccccceEEEEEeCCCCCCCEEEEEeCcC
Q 044242 7 DLVGKAVIVSWVTVDE-------PGTNTVVYWSENSKQKEQAEGKIYTYKYYNYTSGYIHHCTIRHLEFNTKYYYVVGIG 79 (247)
Q Consensus 7 ~~~~~~~~V~W~T~~~-------~~~~~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~v~l~gL~p~t~Y~Yrv~~~ 79 (247)
+|+...-.|.|.--.+ +....+|++++++.-+.+-.++... .....+.++|.+.||+|++.|+||+..+
T Consensus 46 GDp~~~svviWTRl~P~p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a----~p~~dhtv~v~~~gL~P~~~yfYRf~~~ 121 (522)
T COG3540 46 GDPTATSVVIWTRLDPEPLNGGRPVPVIWEVSTDENFSNIVRKGTVIA----SPELDHTVHVDLRGLSPDQDYFYRFKAG 121 (522)
T ss_pred CCCCCCeEEEEEccCCccccCCCCcceEEEecCCccHHHHHhcCCccC----CcccCceEEEeccCCCCCceEEEEEeeC
Confidence 4567777889987652 1244666777665322222222211 1245678899999999999999999876
Q ss_pred -CcceeEEEeCCCCCCCCCCeEEEEEeccCCCCC---chHHHHHHHhCCCCCCeEEEeccccccCCCCCC----------
Q 044242 80 -HTERQFWFVTPPEVGPDVPYSFGLIGDLGQSYD---SNVTLTHYERNPRKGQTLLFVGDLSYADIYPCH---------- 145 (247)
Q Consensus 80 -~~s~~~~F~T~p~~~~~~~~~f~~~gD~~~~~~---~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~---------- 145 (247)
..|.++.|+|+|.. ...++|+.+||..+... -..+.++|.+. ++||+||.||.+|+++....
T Consensus 122 ~~~spvGrtrTapa~--~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~--~~D~viH~GDyIYeyg~~~~~~~~~~~~~~ 197 (522)
T COG3540 122 DERSPVGRTRTAPAP--GRAIRFVWFADASCQGWEIGYMTAYKTMAKE--EPDFVIHLGDYIYEYGPIPDEVSLNSWKNV 197 (522)
T ss_pred CccccccccccCCCC--CCcchhhhhhhccccccccchhHHHHHHHhc--CCCEEEEcCCeeeccCCccccccccccccc
Confidence 56899999999986 45789999999866442 34567888887 79999999999999875310
Q ss_pred --------CCcchhhHH---------HHHHHhhhcCceEEcCCCCccccCCCCCCcc--c------C-----cccceee-
Q 044242 146 --------DNNRWDTWG---------RFVERSAAYQPWIWTAGNHEIDFYPEIGETV--P------F-----KPYSHRY- 194 (247)
Q Consensus 146 --------~~~~w~~~~---------~~~~~~~~~~P~~~~~GNHE~~~~~~~~~~~--~------~-----~~y~~~f- 194 (247)
.-.-.++|. ..++...+..|+++.+.+||+.+|...+... + + .++++++
T Consensus 198 ~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE 277 (522)
T COG3540 198 VVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYE 277 (522)
T ss_pred ccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHHHHHHHH
Confidence 001122232 2356677789999999999998764321111 0 0 1222222
Q ss_pred cCCCCCCC--CCCCcEEEEEeCc-EEEEEEccc--c------C-C--------C-----CCChhHHHHHhhhhhcc
Q 044242 195 HVPYRASG--STAPFWYSIKRAS-AYIIVLSSY--S------A-Y--------G-----KDVLLPTVINKNFKLHN 245 (247)
Q Consensus 195 ~~p~~~~~--~~~~~~Ysf~~G~-v~fi~lds~--~------~-~--------~-----~~~~Q~~WL~~dL~~~~ 245 (247)
.||-..+. .....|.+|.||+ +.|.+||+. . + . + .+++|.+||+..|.++.
T Consensus 278 ~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~Sk 353 (522)
T COG3540 278 HMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGASK 353 (522)
T ss_pred hCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhcc
Confidence 36655422 1367999999999 699999983 2 1 0 0 37999999999998754
No 6
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.81 E-value=1.1e-19 Score=155.26 Aligned_cols=137 Identities=17% Similarity=0.280 Sum_probs=90.5
Q ss_pred eEEEEEeccCCCC-Cc----hHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcch-hhHHHHHHHhhhcCceEEcCCC
Q 044242 99 YSFGLIGDLGQSY-DS----NVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRW-DTWGRFVERSAAYQPWIWTAGN 172 (247)
Q Consensus 99 ~~f~~~gD~~~~~-~~----~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w-~~~~~~~~~~~~~~P~~~~~GN 172 (247)
++|+++||+|... .. ...+.++++. .++||||++||++|+++........| +.|.+.+..+...+|+++++||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~-~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GN 79 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAE-LGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGN 79 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHh-cCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCC
Confidence 4899999999852 22 2233444444 58999999999999877432222344 3455555545457999999999
Q ss_pred CccccCCCCCCcccCcc--cceeecCCCCCCCCCCCcEEEEEeC------cEEEEEEccccC---C------------CC
Q 044242 173 HEIDFYPEIGETVPFKP--YSHRYHVPYRASGSTAPFWYSIKRA------SAYIIVLSSYSA---Y------------GK 229 (247)
Q Consensus 173 HE~~~~~~~~~~~~~~~--y~~~f~~p~~~~~~~~~~~Ysf~~G------~v~fi~lds~~~---~------------~~ 229 (247)
||...+.. ....+.. +..+|.+| ..||+|++| +++||+|||... + ..
T Consensus 80 HD~~~~~~--~~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~ 149 (277)
T cd07378 80 HDYSGNVS--AQIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKL 149 (277)
T ss_pred cccCCCch--heeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhh
Confidence 99974311 0000111 12333333 579999998 799999999531 1 13
Q ss_pred CChhHHHHHhhhhhccC
Q 044242 230 DVLLPTVINKNFKLHNC 246 (247)
Q Consensus 230 ~~~Q~~WL~~dL~~~~r 246 (247)
..+|++||+++|+++.+
T Consensus 150 ~~~Q~~wL~~~L~~~~~ 166 (277)
T cd07378 150 AEEQLAWLEKTLAASTA 166 (277)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 68999999999998753
No 7
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.77 E-value=1.3e-18 Score=147.52 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=90.4
Q ss_pred CCeEEEEEeccCCCCC--c--------h---HHHHH----HHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHH
Q 044242 97 VPYSFGLIGDLGQSYD--S--------N---VTLTH----YERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVER 159 (247)
Q Consensus 97 ~~~~f~~~gD~~~~~~--~--------~---~~~~~----~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~ 159 (247)
.+|+|++++|+|.... . . ..+++ +.+...+|||||++||+++..........+|+.+.+.++.
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL 82 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh
Confidence 5799999999998631 1 1 12333 3333348999999999998754211001345566666666
Q ss_pred hhhcCceEEcCCCCccccCCCCCCcccCcccceeecCCCCCCCCCCCcEEEEEeCcEEEEEEccccCC------CCCChh
Q 044242 160 SAAYQPWIWTAGNHEIDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWYSIKRASAYIIVLSSYSAY------GKDVLL 233 (247)
Q Consensus 160 ~~~~~P~~~~~GNHE~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds~~~~------~~~~~Q 233 (247)
+...+|+++++||||....+.. ..+..|...| ++.||+|++|+++||+|||.... ....+|
T Consensus 83 ~~~~vp~~~i~GNHD~~~~~~~---~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~q 149 (262)
T cd07395 83 LDPDIPLVCVCGNHDVGNTPTE---ESIKDYRDVF----------GDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQ 149 (262)
T ss_pred ccCCCcEEEeCCCCCCCCCCCh---hHHHHHHHHh----------CCcceEEEECCEEEEEeccccccCccccccchHHH
Confidence 6567999999999998532110 0112232222 34689999999999999995321 135799
Q ss_pred HHHHHhhhhhcc
Q 044242 234 PTVINKNFKLHN 245 (247)
Q Consensus 234 ~~WL~~dL~~~~ 245 (247)
++||+++|+++.
T Consensus 150 l~WL~~~L~~~~ 161 (262)
T cd07395 150 DVWLEEQLEIAK 161 (262)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 8
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.70 E-value=1.1e-16 Score=136.09 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=82.1
Q ss_pred eEEEEEeccCCCCC----------chHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCce
Q 044242 99 YSFGLIGDLGQSYD----------SNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPW 166 (247)
Q Consensus 99 ~~f~~~gD~~~~~~----------~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~ 166 (247)
|||++++|+|.... +...++++++.+ .++||||++||+++..... ..+.|+.+.+.+..+ .+|+
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~--~~~~~~~~~~~l~~l--~~p~ 76 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNAR--AEEALDAVLAILDRL--KGPV 76 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCch--HHHHHHHHHHHHHhc--CCCE
Confidence 79999999995431 122333333221 3699999999999764310 112344444444433 5899
Q ss_pred EEcCCCCccccCCCCCCcccCcccceeecCCCCCCCCCCCcEEEEEeCcEEEEEEccccC--------------------
Q 044242 167 IWTAGNHEIDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWYSIKRASAYIIVLSSYSA-------------------- 226 (247)
Q Consensus 167 ~~~~GNHE~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds~~~-------------------- 226 (247)
++++||||..... ..+.. +... ...+..||+|++|+++||+||+..-
T Consensus 77 ~~v~GNHD~~~~~--------~~~~~-~~~~----~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~ 143 (267)
T cd07396 77 HHVLGNHDLYNPS--------REYLL-LYTL----LGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSN 143 (267)
T ss_pred EEecCcccccccc--------Hhhhh-cccc----cCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhch
Confidence 9999999996421 11110 0001 1235679999999999999999521
Q ss_pred ------------C--CCCChhHHHHHhhhhhcc
Q 044242 227 ------------Y--GKDVLLPTVINKNFKLHN 245 (247)
Q Consensus 227 ------------~--~~~~~Q~~WL~~dL~~~~ 245 (247)
+ ...++|++||+++|+++.
T Consensus 144 ~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~ 176 (267)
T cd07396 144 LGLYLSEPRFVDWNGGIGEEQLQWLRNELQEAD 176 (267)
T ss_pred hhhhccCccceeccCcCCHHHHHHHHHHHHHHH
Confidence 0 125799999999998753
No 9
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.64 E-value=1e-15 Score=127.91 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=85.2
Q ss_pred EEEEEeccCCCCCc---------hHHHHHHHh----CCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCce
Q 044242 100 SFGLIGDLGQSYDS---------NVTLTHYER----NPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPW 166 (247)
Q Consensus 100 ~f~~~gD~~~~~~~---------~~~~~~~~~----~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~ 166 (247)
||++++|+|..... ...++++++ ...++||||++||+++... ...|..+.+.++.+ .+|+
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~-----~~~~~~~~~~l~~~--~~p~ 73 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS-----PESYERLRELLAAL--PIPV 73 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC-----HHHHHHHHHHHhhc--CCCE
Confidence 69999999976421 233444433 2248999999999998643 23455565666555 7999
Q ss_pred EEcCCCCccccCCCCCCcccCcccceeecCCCCCCCCCCCcEEEEEeCcEEEEEEccccCC---C-CCChhHHHHHhhhh
Q 044242 167 IWTAGNHEIDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWYSIKRASAYIIVLSSYSAY---G-KDVLLPTVINKNFK 242 (247)
Q Consensus 167 ~~~~GNHE~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds~~~~---~-~~~~Q~~WL~~dL~ 242 (247)
+.++||||.... +...|..... ..+..+|+|+.|+++||+||+.... + ..++|++||++.|+
T Consensus 74 ~~v~GNHD~~~~-----------~~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~ 139 (240)
T cd07402 74 YLLPGNHDDRAA-----------MRAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALA 139 (240)
T ss_pred EEeCCCCCCHHH-----------HHHhhccccc---cccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHH
Confidence 999999998521 1122211100 1245789999999999999996421 2 35789999999998
Q ss_pred hcc
Q 044242 243 LHN 245 (247)
Q Consensus 243 ~~~ 245 (247)
++.
T Consensus 140 ~~~ 142 (240)
T cd07402 140 EAP 142 (240)
T ss_pred hCC
Confidence 864
No 10
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.56 E-value=2.4e-14 Score=122.33 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=84.3
Q ss_pred EeCCCCCCCCCCeEEEEEeccCCCCC---------chHHH----HHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhH
Q 044242 87 FVTPPEVGPDVPYSFGLIGDLGQSYD---------SNVTL----THYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTW 153 (247)
Q Consensus 87 F~T~p~~~~~~~~~f~~~gD~~~~~~---------~~~~~----~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~ 153 (247)
.+|++.. ..++||+.++|+|.... ..+.+ +++.+...++||||++||+++... .+.+..+
T Consensus 5 ~~~~~~~--~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~-----~~~~~~~ 77 (275)
T PRK11148 5 LTLPLAG--EARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS-----SEAYQHF 77 (275)
T ss_pred cccccCC--CCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC-----HHHHHHH
Confidence 4565543 46799999999996321 12333 334343347999999999998532 1344445
Q ss_pred HHHHHHhhhcCceEEcCCCCccccCCCCCCcccCcccceeecCCCCCCCCCCCcEEEEEeCcEEEEEEccccC---CC-C
Q 044242 154 GRFVERSAAYQPWIWTAGNHEIDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWYSIKRASAYIIVLSSYSA---YG-K 229 (247)
Q Consensus 154 ~~~~~~~~~~~P~~~~~GNHE~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds~~~---~~-~ 229 (247)
.+.++.+ .+|+++++||||.... +...|. .. ...+.++.+..++++||+|||... .+ .
T Consensus 78 ~~~l~~l--~~Pv~~v~GNHD~~~~-----------~~~~~~--~~---~~~~~~~~~~~~~~~~i~Lds~~~g~~~G~l 139 (275)
T PRK11148 78 AEGIAPL--RKPCVWLPGNHDFQPA-----------MYSALQ--DA---GISPAKHVLIGEHWQILLLDSQVFGVPHGEL 139 (275)
T ss_pred HHHHhhc--CCcEEEeCCCCCChHH-----------HHHHHh--hc---CCCccceEEecCCEEEEEecCCCCCCcCCEe
Confidence 5555544 5899999999998531 111111 00 011233444455699999999531 22 3
Q ss_pred CChhHHHHHhhhhhcc
Q 044242 230 DVLLPTVINKNFKLHN 245 (247)
Q Consensus 230 ~~~Q~~WL~~dL~~~~ 245 (247)
+.+|++||++.|+++.
T Consensus 140 ~~~ql~wL~~~L~~~~ 155 (275)
T PRK11148 140 SEYQLEWLERKLADAP 155 (275)
T ss_pred CHHHHHHHHHHHhhCC
Confidence 6899999999998764
No 11
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.53 E-value=4.7e-14 Score=124.16 Aligned_cols=139 Identities=14% Similarity=0.230 Sum_probs=89.9
Q ss_pred CCCeEEEEEeccCCCCCch----HHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHH-HHHHhh--hcCceEE
Q 044242 96 DVPYSFGLIGDLGQSYDSN----VTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGR-FVERSA--AYQPWIW 168 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~~----~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~-~~~~~~--~~~P~~~ 168 (247)
...++|+++||+|.....+ +.+.++.++ .++||||.+||+. .+|..+.++.+|.+-|+ ...... -.+||++
T Consensus 24 ~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~-~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~ 101 (394)
T PTZ00422 24 KAQLRFASLGNWGTGSKQQKLVASYLKQYAKN-ERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSEESGDMQIPFFT 101 (394)
T ss_pred CCeEEEEEEecCCCCchhHHHHHHHHHHHHHh-CCCCEEEECCccc-cCCCCCccchhHHhhHhhhccCcchhhCCCeEE
Confidence 4579999999999754333 233444455 5899999999998 45654445677876444 333332 4789999
Q ss_pred cCCCCccccCCCCCCcccCc------------------ccceeecCCCCCCCCCCCcEEEE----Ee-------------
Q 044242 169 TAGNHEIDFYPEIGETVPFK------------------PYSHRYHVPYRASGSTAPFWYSI----KR------------- 213 (247)
Q Consensus 169 ~~GNHE~~~~~~~~~~~~~~------------------~y~~~f~~p~~~~~~~~~~~Ysf----~~------------- 213 (247)
++||||+..+... +...+. .-..||.|| +.||.| ..
T Consensus 102 vLGNHDy~Gn~~A-Qi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP--------~~yY~~~~~f~~~~~~~~~~~~~~~ 172 (394)
T PTZ00422 102 VLGQADWDGNYNA-ELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMP--------NYWYHYFTHFTDTSGPSLLKSGHKD 172 (394)
T ss_pred eCCcccccCCchh-hhccccccccccccccccccccccccCCCccCC--------chhheeeeeeecccccccccccCCC
Confidence 9999999755321 000010 112577787 367754 22
Q ss_pred CcEEEEEEcccc-----CCC-CCChhHHHHHhhhhhcc
Q 044242 214 ASAYIIVLSSYS-----AYG-KDVLLPTVINKNFKLHN 245 (247)
Q Consensus 214 G~v~fi~lds~~-----~~~-~~~~Q~~WL~~dL~~~~ 245 (247)
..|.||+|||.. .+. ....|++||+++|+.+.
T Consensus 173 ~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~ 210 (394)
T PTZ00422 173 MSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAP 210 (394)
T ss_pred CEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhhc
Confidence 238999999952 122 24689999999997543
No 12
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.50 E-value=3.5e-14 Score=122.49 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=87.9
Q ss_pred EEEeccCCCCC---chHHHHHHHhCCCCCCeEEEeccccccCCCCCCCC--c--chhhHHHHHHHhhhcCceEEcCCCCc
Q 044242 102 GLIGDLGQSYD---SNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDN--N--RWDTWGRFVERSAAYQPWIWTAGNHE 174 (247)
Q Consensus 102 ~~~gD~~~~~~---~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~--~--~w~~~~~~~~~~~~~~P~~~~~GNHE 174 (247)
.-+|+.++... ...+++.+.+...++||||++||++..+....... . .+..+++.++.....+|+++++||||
T Consensus 41 ~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD 120 (296)
T cd00842 41 GPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHD 120 (296)
T ss_pred CCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCC
Confidence 34777776432 12445556665568999999999998765321111 1 24455566776677899999999999
Q ss_pred cccCCCCC----CcccCcccceeec--CCCCCC-CCCCCcEEEEE-eCcEEEEEEccccCC-----------CCCChhHH
Q 044242 175 IDFYPEIG----ETVPFKPYSHRYH--VPYRAS-GSTAPFWYSIK-RASAYIIVLSSYSAY-----------GKDVLLPT 235 (247)
Q Consensus 175 ~~~~~~~~----~~~~~~~y~~~f~--~p~~~~-~~~~~~~Ysf~-~G~v~fi~lds~~~~-----------~~~~~Q~~ 235 (247)
........ ....+..+...|. +|.+.. ....+.||++. .++++||+|||...+ .....|++
T Consensus 121 ~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~ 200 (296)
T cd00842 121 SYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQ 200 (296)
T ss_pred CCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHH
Confidence 96421110 0000111112221 232211 11245789999 889999999995311 12478999
Q ss_pred HHHhhhhhcc
Q 044242 236 VINKNFKLHN 245 (247)
Q Consensus 236 WL~~dL~~~~ 245 (247)
||+++|+++.
T Consensus 201 WL~~~L~~a~ 210 (296)
T cd00842 201 WLEDELQEAE 210 (296)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 13
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.50 E-value=2.1e-13 Score=115.37 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=82.0
Q ss_pred EEEEeccCCCCCch-H------HHHHHHhCCCCCCeEEEeccccccCCCC----CCCCcchhhHHHHHHHhhh--cCceE
Q 044242 101 FGLIGDLGQSYDSN-V------TLTHYERNPRKGQTLLFVGDLSYADIYP----CHDNNRWDTWGRFVERSAA--YQPWI 167 (247)
Q Consensus 101 f~~~gD~~~~~~~~-~------~~~~~~~~~~~~dfvl~~GD~~y~~~~~----~~~~~~w~~~~~~~~~~~~--~~P~~ 167 (247)
|+.++|.|.+.... . .+...++. .+|||+|++||+++..... ...+..|+.|++.+..... ..|++
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~-~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDV-IKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWF 80 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHh-hCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEE
Confidence 78899998754311 1 11222233 4899999999999764311 0124568888887765433 58999
Q ss_pred EcCCCCccccCCCCCCcccCcccceeecCCCCCCCCCCCcEEEEEeCcEEEEEEccccC------C---C-CCChhHHHH
Q 044242 168 WTAGNHEIDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWYSIKRASAYIIVLSSYSA------Y---G-KDVLLPTVI 237 (247)
Q Consensus 168 ~~~GNHE~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds~~~------~---~-~~~~Q~~WL 237 (247)
.++||||......... ....|........ ......++++..|+++||+|||... + + ..++|++||
T Consensus 81 ~v~GNHD~~~~~~~~~--~~~~~~~y~~~~~---~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL 155 (256)
T cd07401 81 DIRGNHDLFNIPSLDS--ENNYYRKYSATGR---DGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRL 155 (256)
T ss_pred EeCCCCCcCCCCCccc--hhhHHHHhheecC---CCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHH
Confidence 9999999953221110 1111211111110 0011222233459999999999531 1 1 358999999
Q ss_pred Hhhhhhcc
Q 044242 238 NKNFKLHN 245 (247)
Q Consensus 238 ~~dL~~~~ 245 (247)
+++|+++.
T Consensus 156 ~~~L~~~~ 163 (256)
T cd07401 156 EKELEKST 163 (256)
T ss_pred HHHHHhcc
Confidence 99998764
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.42 E-value=4.7e-13 Score=110.23 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=54.3
Q ss_pred eEEEEEeccCCCCC-c----hHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhh-hcCceEEcC
Q 044242 99 YSFGLIGDLGQSYD-S----NVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSA-AYQPWIWTA 170 (247)
Q Consensus 99 ~~f~~~gD~~~~~~-~----~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~-~~~P~~~~~ 170 (247)
|||++++|+|.... . .+.++++++.. .++|||+++||+++... ....|+.+.+.++.+. ..+|+++++
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~----~~~~~~~~~~~~~~l~~~~~p~~~~~ 76 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGD----NDAEWEAADKAFARLDKAGIPYSVLA 76 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCC----CHHHHHHHHHHHHHHHHcCCcEEEEC
Confidence 68999999997432 1 12334444432 47999999999998643 1357888888888886 579999999
Q ss_pred CCCc
Q 044242 171 GNHE 174 (247)
Q Consensus 171 GNHE 174 (247)
||||
T Consensus 77 GNHD 80 (214)
T cd07399 77 GNHD 80 (214)
T ss_pred CCCc
Confidence 9999
No 15
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.41 E-value=7.9e-13 Score=111.63 Aligned_cols=116 Identities=14% Similarity=0.098 Sum_probs=73.6
Q ss_pred HHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhh----hcCceEEcCCCCccccCCCCCCcccCccc
Q 044242 115 VTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSA----AYQPWIWTAGNHEIDFYPEIGETVPFKPY 190 (247)
Q Consensus 115 ~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~----~~~P~~~~~GNHE~~~~~~~~~~~~~~~y 190 (247)
+.++.+++. .+||+||++||+++.+... ...+|.+..+.+..+. ..+|++.++||||+...... .......|
T Consensus 35 ~~~~~~~~~-l~PD~vv~lGDL~d~G~~~--~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~-~~~~~~rf 110 (257)
T cd08163 35 RNWRYMQKQ-LKPDSTIFLGDLFDGGRDW--ADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGV-VLPVRQRF 110 (257)
T ss_pred HHHHHHHHh-cCCCEEEEecccccCCeeC--cHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCC-CHHHHHHH
Confidence 344555554 4899999999999864321 2345544333333332 24789999999998643110 00112345
Q ss_pred ceeecCCCCCCCCCCCcEEEEEeCcEEEEEEcccc-----CCCCCChhHHHHHhhhhhc
Q 044242 191 SHRYHVPYRASGSTAPFWYSIKRASAYIIVLSSYS-----AYGKDVLLPTVINKNFKLH 244 (247)
Q Consensus 191 ~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds~~-----~~~~~~~Q~~WL~~dL~~~ 244 (247)
.+.| ++.+|+|++|+++||+|||-. +.....+|.+||++.|+..
T Consensus 111 ~~~F----------g~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~ 159 (257)
T cd08163 111 EKYF----------GPTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMK 159 (257)
T ss_pred HHHh----------CCCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhcc
Confidence 5555 234689999999999999952 1123568999999998764
No 16
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.05 E-value=7.3e-10 Score=90.14 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=50.2
Q ss_pred CeEEEEEeccCCCCCc------------hHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-cC
Q 044242 98 PYSFGLIGDLGQSYDS------------NVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-YQ 164 (247)
Q Consensus 98 ~~~f~~~gD~~~~~~~------------~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~~ 164 (247)
.|||++++|+|..... .+.+.++++. .+|||||++||+++..... ...+..+.+.++++.. .+
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vv~~GDl~~~~~~~---~~~~~~~~~~~~~l~~~~~ 77 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDA-EKPDLVVLTGDLITGENTN---DNSTSALDKAVSPMIDRKI 77 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhh-cCCCEEEECCccccCCCCc---hHHHHHHHHHHHHHHHcCC
Confidence 5899999999975421 1223334444 5899999999999875421 1124455555666544 69
Q ss_pred ceEEcCCCCc
Q 044242 165 PWIWTAGNHE 174 (247)
Q Consensus 165 P~~~~~GNHE 174 (247)
|+++++||||
T Consensus 78 p~~~~~GNHD 87 (199)
T cd07383 78 PWAATFGNHD 87 (199)
T ss_pred CEEEECccCC
Confidence 9999999999
No 17
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.3e-10 Score=92.44 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=58.2
Q ss_pred EEeCCCCCCCCCCeEEEEEeccCCCCCch-----HHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHH-HHH-H
Q 044242 86 WFVTPPEVGPDVPYSFGLIGDLGQSYDSN-----VTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWG-RFV-E 158 (247)
Q Consensus 86 ~F~T~p~~~~~~~~~f~~~gD~~~~~~~~-----~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~-~~~-~ 158 (247)
.|.-++. +++.++|+++||.|...... .....|.+. -++||||.+||..|+.|..+.++.+.++=| +.. .
T Consensus 33 ~l~~p~~--~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~-l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~ 109 (336)
T KOG2679|consen 33 RLYDPAK--SDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEK-LDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTA 109 (336)
T ss_pred hhcCCCC--CCCceEEEEEcccccCCchhHHHHHHHHHhHHHh-ccceEEEecCCcccccCCCCCCChhHHhhhhhcccC
Confidence 3444443 46789999999998644211 122334444 489999999999999986544443433222 222 2
Q ss_pred HhhhcCceEEcCCCCccccC
Q 044242 159 RSAAYQPWIWTAGNHEIDFY 178 (247)
Q Consensus 159 ~~~~~~P~~~~~GNHE~~~~ 178 (247)
|.+ ..||+.+.||||+..|
T Consensus 110 pSL-QkpWy~vlGNHDyrGn 128 (336)
T KOG2679|consen 110 PSL-QKPWYSVLGNHDYRGN 128 (336)
T ss_pred ccc-ccchhhhccCccccCc
Confidence 333 4699999999999876
No 18
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.01 E-value=2.2e-09 Score=91.88 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=78.7
Q ss_pred eEEEEEeccCCC--C-CchHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCC
Q 044242 99 YSFGLIGDLGQS--Y-DSNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNH 173 (247)
Q Consensus 99 ~~f~~~gD~~~~--~-~~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNH 173 (247)
++|+.++|.|.. . .+...+..+++.. .+||++|++||+++... . .......+.++......|++++||||
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~-~----~~~~~~~~~l~~~~~~~~~~~vpGNH 75 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGE-P----EEYRRLKELLARLELPAPVIVVPGNH 75 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCC-H----HHHHHHHHHHhhccCCCceEeeCCCC
Confidence 479999999987 2 2333444443322 47899999999999832 1 22333334444334467899999999
Q ss_pred ccccCCCCCCcccCcccceeecCCCCCCCCCCCcEEEEEe-CcEEEEEEccccC---CC-CCChhHHHHHhhhhhcc
Q 044242 174 EIDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWYSIKR-ASAYIIVLSSYSA---YG-KDVLLPTVINKNFKLHN 245 (247)
Q Consensus 174 E~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Ysf~~-G~v~fi~lds~~~---~~-~~~~Q~~WL~~dL~~~~ 245 (247)
|..... ...+...+..+ ...+-.... +.+++|.+|+... .+ ....|++||++.|+++.
T Consensus 76 D~~~~~-------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~ 138 (301)
T COG1409 76 DARVVN-------GEAFSDQFFNR-------YAVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAP 138 (301)
T ss_pred cCCchH-------HHHhhhhhccc-------CcceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCc
Confidence 986421 12222222111 011112222 6789999999643 22 47899999999999754
No 19
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=98.90 E-value=6.2e-09 Score=93.64 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=34.0
Q ss_pred CCcEEEEE-eCcEEEEEEccccCC----C-CCChhHHHHHhhhhhcc
Q 044242 205 APFWYSIK-RASAYIIVLSSYSAY----G-KDVLLPTVINKNFKLHN 245 (247)
Q Consensus 205 ~~~~Ysf~-~G~v~fi~lds~~~~----~-~~~~Q~~WL~~dL~~~~ 245 (247)
+..||||+ .+++|||+|||.... + ..++|++||+++|+++.
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a~ 336 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRASS 336 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcCC
Confidence 56799999 999999999996421 2 36899999999999753
No 20
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.88 E-value=4.3e-09 Score=81.43 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=47.7
Q ss_pred eEEEEEeccCCCCCch----HHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHH-HHHHHhhhcCceEEcCCCC
Q 044242 99 YSFGLIGDLGQSYDSN----VTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWG-RFVERSAAYQPWIWTAGNH 173 (247)
Q Consensus 99 ~~f~~~gD~~~~~~~~----~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~-~~~~~~~~~~P~~~~~GNH 173 (247)
+||+++||+|...... ..+...... .++||||++||+++..... ..+.... .........+|+++++|||
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~-~~~d~ii~~GD~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAE-NKPDFIIFLGDLVDGGNPS----EEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHH-TTTSEEEEESTSSSSSSHH----HHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhcc-CCCCEEEeecccccccccc----ccchhhhccchhhhhcccccccccccc
Confidence 6999999999865322 222223333 5899999999999975411 1111111 1234456689999999999
Q ss_pred cccc
Q 044242 174 EIDF 177 (247)
Q Consensus 174 E~~~ 177 (247)
|...
T Consensus 76 D~~~ 79 (200)
T PF00149_consen 76 DYYS 79 (200)
T ss_dssp SSHH
T ss_pred ccce
Confidence 9974
No 21
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=98.86 E-value=1.9e-08 Score=83.42 Aligned_cols=142 Identities=13% Similarity=0.042 Sum_probs=81.4
Q ss_pred EEEEEeccCCCCCchHHHHHHH---hCCCCCCeEEEeccccccCCCCCC--------------CCcchhhHH--------
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYE---RNPRKGQTLLFVGDLSYADIYPCH--------------DNNRWDTWG-------- 154 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~---~~~~~~dfvl~~GD~~y~~~~~~~--------------~~~~w~~~~-------- 154 (247)
||++.+-.+...........+. .. .++||+||+||.+|++..... ....-+.|.
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~-~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~ 79 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSE-EDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRS 79 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccc-cCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcC
Confidence 3555554443322223334443 12 589999999999999863110 011112222
Q ss_pred -HHHHHhhhcCceEEcCCCCccccCCCCCC-----c--------ccCcccceeecCCCCCCC--CCCCcEEEEEeCcE-E
Q 044242 155 -RFVERSAAYQPWIWTAGNHEIDFYPEIGE-----T--------VPFKPYSHRYHVPYRASG--STAPFWYSIKRASA-Y 217 (247)
Q Consensus 155 -~~~~~~~~~~P~~~~~GNHE~~~~~~~~~-----~--------~~~~~y~~~f~~p~~~~~--~~~~~~Ysf~~G~v-~ 217 (247)
..++.+.+.+|++.++++||+..+..... . .....|....+.+..... .....|++|.+|.. .
T Consensus 80 ~p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~ 159 (228)
T cd07389 80 DPDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVD 159 (228)
T ss_pred CHHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcce
Confidence 12566778999999999999986532210 0 011233333333322211 34679999999996 9
Q ss_pred EEEEcccc---CCCCCChhHHHHHhhhh
Q 044242 218 IIVLSSYS---AYGKDVLLPTVINKNFK 242 (247)
Q Consensus 218 fi~lds~~---~~~~~~~Q~~WL~~dL~ 242 (247)
||+||+.. .+.....+.++|.+.|+
T Consensus 160 ~~~lD~R~~Rd~W~~~~~er~~l~~~~~ 187 (228)
T cd07389 160 LILLDTRTYRDSWDGYPAERERLLDLLA 187 (228)
T ss_pred EEEEecccccccccccHHHHHHHHHHHH
Confidence 99999942 24445566666666553
No 22
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=98.73 E-value=5.6e-08 Score=81.34 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=44.2
Q ss_pred EEEEEeccCCCCCc---hHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCc
Q 044242 100 SFGLIGDLGQSYDS---NVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHE 174 (247)
Q Consensus 100 ~f~~~gD~~~~~~~---~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE 174 (247)
||++++|.|..... ...++.+++.. .++|+||++||++.... ....+++.+..+ ..+|++.++||||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~-------~~~~~~~~l~~~-~~~pv~~v~GNHD 72 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQ-------RSLPFIEKLQEL-KGIKVTFNAGNHD 72 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchh-------hHHHHHHHHHHh-cCCcEEEECCCCC
Confidence 58999999964211 22233333311 37999999999997421 223344444432 3589999999999
Q ss_pred cc
Q 044242 175 ID 176 (247)
Q Consensus 175 ~~ 176 (247)
..
T Consensus 73 ~~ 74 (239)
T TIGR03729 73 ML 74 (239)
T ss_pred CC
Confidence 85
No 23
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=98.64 E-value=1.5e-07 Score=75.17 Aligned_cols=107 Identities=7% Similarity=-0.007 Sum_probs=62.1
Q ss_pred EEEEeccCCCCCchHHHHH-HHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccccCC
Q 044242 101 FGLIGDLGQSYDSNVTLTH-YERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEIDFYP 179 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~~~~-~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~~~~ 179 (247)
++++||+|... ..+.. .++. .++|+||++||+++.... .. ...++.+.. ..+|++.++||||.....
T Consensus 1 i~~~sD~H~~~---~~~~~~~~~~-~~~D~vv~~GDl~~~~~~-----~~-~~~~~~l~~--~~~p~~~v~GNHD~~~~~ 68 (188)
T cd07392 1 ILAISDIHGDV---EKLEAIILKA-EEADAVIVAGDITNFGGK-----EA-AVEINLLLA--IGVPVLAVPGNCDTPEIL 68 (188)
T ss_pred CEEEEecCCCH---HHHHHHHhhc-cCCCEEEECCCccCcCCH-----HH-HHHHHHHHh--cCCCEEEEcCCCCCHHHH
Confidence 47899999753 22221 2222 489999999999976431 11 111122222 268999999999975310
Q ss_pred CCCCcccCcccce-eecCCCCCCCCCCCcEEEEEeCcEEEEEEccccC--C----CCCChhHHHH
Q 044242 180 EIGETVPFKPYSH-RYHVPYRASGSTAPFWYSIKRASAYIIVLSSYSA--Y----GKDVLLPTVI 237 (247)
Q Consensus 180 ~~~~~~~~~~y~~-~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds~~~--~----~~~~~Q~~WL 237 (247)
..... .+.+ .+ ..+.+++++|+.+++... + ...++|++||
T Consensus 69 --------~~~~~~~~~~--------~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 115 (188)
T cd07392 69 --------GLLTSAGLNL--------HG--KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD 115 (188)
T ss_pred --------HhhhcCcEec--------CC--CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh
Confidence 11000 0100 11 345688999999997421 1 2356899998
No 24
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=98.63 E-value=1.7e-07 Score=83.76 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=32.0
Q ss_pred CCcEEEEE-eCcE--EEEEEcccc---C------C-C-CCChhHHHHHhhhhhcc
Q 044242 205 APFWYSIK-RASA--YIIVLSSYS---A------Y-G-KDVLLPTVINKNFKLHN 245 (247)
Q Consensus 205 ~~~~Ysf~-~G~v--~fi~lds~~---~------~-~-~~~~Q~~WL~~dL~~~~ 245 (247)
+..||+|+ .|++ |||+||+.. + + + ..++|++||+++|+++.
T Consensus 291 G~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~ 345 (492)
T TIGR03768 291 DFACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQ 345 (492)
T ss_pred CcceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCc
Confidence 45699999 6845 999999853 1 1 1 36899999999999865
No 25
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.63 E-value=1.1e-07 Score=81.03 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=53.1
Q ss_pred CCeEEEEEeccCCCCC-chHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCC
Q 044242 97 VPYSFGLIGDLGQSYD-SNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNH 173 (247)
Q Consensus 97 ~~~~f~~~gD~~~~~~-~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNH 173 (247)
.++|+++++|+|.... ....++++++.. .+||+|+++||+++... ...++.+.+.++.+.+..|++.++|||
T Consensus 48 ~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~-----~~~~~~~~~~L~~L~~~~pv~~V~GNH 122 (271)
T PRK11340 48 APFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDM-----PLNFSAFSDVLSPLAECAPTFACFGNH 122 (271)
T ss_pred CCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCc-----cccHHHHHHHHHHHhhcCCEEEecCCC
Confidence 5799999999997532 122334333221 48999999999997322 123456667777777778999999999
Q ss_pred ccc
Q 044242 174 EID 176 (247)
Q Consensus 174 E~~ 176 (247)
|+.
T Consensus 123 D~~ 125 (271)
T PRK11340 123 DRP 125 (271)
T ss_pred Ccc
Confidence 985
No 26
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.61 E-value=2e-07 Score=82.25 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=76.0
Q ss_pred CCCeEEEEEeccCCCCCc--------------hHHHHH---HHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHH
Q 044242 96 DVPYSFGLIGDLGQSYDS--------------NVTLTH---YERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVE 158 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~--------------~~~~~~---~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~ 158 (247)
+..+|+++++|.|.-+.. ..-+++ +++..-+||.++++||+.+++... .+++|.+..+-+.
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~--~~eEf~~~~~Rfk 123 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWA--GDEEFKKRYERFK 123 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccC--ChHHHHHHHHHHH
Confidence 467999999999986521 111221 222236999999999999976543 3456665444454
Q ss_pred Hhh---hcCceEEcCCCCccccCCCCCCcccCcccceeecCCCCCCCCCCCcEEEEEeCcEEEEEEcccc
Q 044242 159 RSA---AYQPWIWTAGNHEIDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWYSIKRASAYIIVLSSYS 225 (247)
Q Consensus 159 ~~~---~~~P~~~~~GNHE~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds~~ 225 (247)
.+. ..+|.+.++||||++.... .-.....||.- ..++...+|+.|++-|+++|++.
T Consensus 124 kIf~~k~~~~~~~i~GNhDIGf~~~-----~~~~~i~Rfe~------~fg~~~r~f~v~~~tf~~~d~~~ 182 (410)
T KOG3662|consen 124 KIFGRKGNIKVIYIAGNHDIGFGNE-----LIPEWIDRFES------VFGPTERRFDVGNLTFVMFDSNA 182 (410)
T ss_pred HhhCCCCCCeeEEeCCccccccccc-----cchhHHHHHHH------hhcchhhhhccCCceeEEeeehh
Confidence 443 3799999999999975321 11122234421 12446788999999999999963
No 27
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.56 E-value=1.9e-07 Score=77.04 Aligned_cols=74 Identities=16% Similarity=0.078 Sum_probs=51.3
Q ss_pred CeEEEEEeccCCCCC-chHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCc
Q 044242 98 PYSFGLIGDLGQSYD-SNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHE 174 (247)
Q Consensus 98 ~~~f~~~gD~~~~~~-~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE 174 (247)
++||++++|+|.... ..+.++++++.. .++|+||++||+++.... .. +.+.+.+..+....|++.++||||
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~-----~~-~~~~~~l~~l~~~~~v~~v~GNHD 74 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVD-----VL-ELLLELLKKLKAPLGVYAVLGNHD 74 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcch-----hh-HHHHHHHhccCCCCCEEEECCCcc
Confidence 479999999998643 122334333321 479999999999986431 11 345556666666789999999999
Q ss_pred ccc
Q 044242 175 IDF 177 (247)
Q Consensus 175 ~~~ 177 (247)
...
T Consensus 75 ~~~ 77 (223)
T cd07385 75 YYS 77 (223)
T ss_pred ccc
Confidence 864
No 28
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.52 E-value=1.8e-07 Score=71.90 Aligned_cols=69 Identities=17% Similarity=0.305 Sum_probs=46.7
Q ss_pred EEEEeccCCCCCchH----H---HHHH---HhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhc-CceEEc
Q 044242 101 FGLIGDLGQSYDSNV----T---LTHY---ERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAY-QPWIWT 169 (247)
Q Consensus 101 f~~~gD~~~~~~~~~----~---~~~~---~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~-~P~~~~ 169 (247)
|+.++|.|....... . ++++ ++. .++|+|+++||+++... ...|..+.+.++.+... +|++.+
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~-~~~d~vi~~GDl~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~v 74 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKA-LDPDLVVITGDLTQRGL-----PEEFEEAREFLDALPAPLEPVLVV 74 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhc-cCCCEEEECCCCCCCCC-----HHHHHHHHHHHHHccccCCcEEEe
Confidence 467899987653211 1 1112 222 48999999999998743 24566666667776543 699999
Q ss_pred CCCCcc
Q 044242 170 AGNHEI 175 (247)
Q Consensus 170 ~GNHE~ 175 (247)
+||||.
T Consensus 75 ~GNHD~ 80 (144)
T cd07400 75 PGNHDV 80 (144)
T ss_pred CCCCeE
Confidence 999995
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.47 E-value=4.1e-07 Score=74.78 Aligned_cols=75 Identities=19% Similarity=0.078 Sum_probs=51.3
Q ss_pred EEEEEeccCCCCCc------------hHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhh-hcC
Q 044242 100 SFGLIGDLGQSYDS------------NVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSA-AYQ 164 (247)
Q Consensus 100 ~f~~~gD~~~~~~~------------~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~-~~~ 164 (247)
||++++|+|..... ..+++++.+.. .++|+||++||+++.... ....+..+.+.+..+. ..+
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 77 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNP---SPEALELLIEALRRLKEAGI 77 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCC---CHHHHHHHHHHHHHHHHCCC
Confidence 68999999976421 12344444321 489999999999886431 1234556666666664 478
Q ss_pred ceEEcCCCCcccc
Q 044242 165 PWIWTAGNHEIDF 177 (247)
Q Consensus 165 P~~~~~GNHE~~~ 177 (247)
|+++++||||...
T Consensus 78 ~v~~~~GNHD~~~ 90 (223)
T cd00840 78 PVFIIAGNHDSPS 90 (223)
T ss_pred CEEEecCCCCCcc
Confidence 9999999999864
No 30
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=98.47 E-value=2.1e-07 Score=77.56 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=56.7
Q ss_pred CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-cCceEEcCCCCccccCCCCCCcccCcccceeecCCCCCCCC
Q 044242 125 RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-YQPWIWTAGNHEIDFYPEIGETVPFKPYSHRYHVPYRASGS 203 (247)
Q Consensus 125 ~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~~P~~~~~GNHE~~~~~~~~~~~~~~~y~~~f~~p~~~~~~ 203 (247)
.++|+||++||+++... ..++...++.+.+ ..|++.++||||.... . ...+.+.+ +..+ -
T Consensus 40 ~~~D~viiaGDl~~~~~--------~~~~~~~l~~l~~l~~~v~~V~GNHD~~~~-~------~~~~~~~l--~~~~--~ 100 (232)
T cd07393 40 APEDIVLIPGDISWAMK--------LEEAKLDLAWIDALPGTKVLLKGNHDYWWG-S------ASKLRKAL--EESR--L 100 (232)
T ss_pred CCCCEEEEcCCCccCCC--------hHHHHHHHHHHHhCCCCeEEEeCCccccCC-C------HHHHHHHH--HhcC--e
Confidence 48999999999985321 1223233332222 3578999999998321 0 11222111 1100 0
Q ss_pred CCCcEEEEEeCcEEEEEEcccc----CC---------C----CCChhHHHHHhhhhhcc
Q 044242 204 TAPFWYSIKRASAYIIVLSSYS----AY---------G----KDVLLPTVINKNFKLHN 245 (247)
Q Consensus 204 ~~~~~Ysf~~G~v~fi~lds~~----~~---------~----~~~~Q~~WL~~dL~~~~ 245 (247)
.-....++.++++.|+.++... +. . ....|++||++.|+++.
T Consensus 101 ~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~ 159 (232)
T cd07393 101 ALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAK 159 (232)
T ss_pred EEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 0001345677889999987311 11 0 13569999999998753
No 31
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=75.23 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=57.0
Q ss_pred CCCeEEEEEeccCCCCC--------------------chHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHH
Q 044242 96 DVPYSFGLIGDLGQSYD--------------------SNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGR 155 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~--------------------~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~ 155 (247)
+++||++-++|+|.... +...++++++. .+||||+++||+++.... +..-..++.
T Consensus 51 ~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~s-E~PDlVVfTGD~i~g~~t----~Da~~sl~k 125 (379)
T KOG1432|consen 51 DGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLAS-EKPDLVVFTGDNIFGHST----QDAATSLMK 125 (379)
T ss_pred CCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhc-cCCCEEEEeCCccccccc----HhHHHHHHH
Confidence 46799999999987542 12345666665 699999999999997432 122345677
Q ss_pred HHHHhh-hcCceEEcCCCCccccC
Q 044242 156 FVERSA-AYQPWIWTAGNHEIDFY 178 (247)
Q Consensus 156 ~~~~~~-~~~P~~~~~GNHE~~~~ 178 (247)
+++|.. +.|||.++.||||-...
T Consensus 126 AvaP~I~~~IPwA~~lGNHDdes~ 149 (379)
T KOG1432|consen 126 AVAPAIDRKIPWAAVLGNHDDESD 149 (379)
T ss_pred HhhhHhhcCCCeEEEecccccccc
Confidence 888864 57999999999998754
No 32
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.34 E-value=1.3e-06 Score=64.77 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=44.5
Q ss_pred EEEeccCCCCCchHHHH--HHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccc
Q 044242 102 GLIGDLGQSYDSNVTLT--HYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 102 ~~~gD~~~~~~~~~~~~--~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
+++||+|.......... ...+. .++++||++||+++.... ..+..+...........|++.++||||+.
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~-~~~~~vi~~GD~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~GNHDi~ 71 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAA-EKPDFVLVLGDLVGDGPD-----PEEVLAAALALLLLLGIPVYVVPGNHDIL 71 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcc-cCCCEEEECCcccCCCCC-----chHHHHHHHHHhhcCCCCEEEeCCCceEE
Confidence 36899988653322221 12222 589999999999997542 23333332333445689999999999964
No 33
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.30 E-value=2.1e-06 Score=78.61 Aligned_cols=132 Identities=15% Similarity=0.180 Sum_probs=75.6
Q ss_pred HHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchh---hHHHHHHHhhhcCceEEcCCCCccccCCCC--CCcccC--
Q 044242 115 VTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWD---TWGRFVERSAAYQPWIWTAGNHEIDFYPEI--GETVPF-- 187 (247)
Q Consensus 115 ~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~---~~~~~~~~~~~~~P~~~~~GNHE~~~~~~~--~~~~~~-- 187 (247)
.+|++|.+..+++|||+..||++--+...-..+...+ ...+.+......+|+++++||||....... +.....
T Consensus 199 s~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~ 278 (577)
T KOG3770|consen 199 SALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHS 278 (577)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchhh
Confidence 4567777776679999999999975532211111111 122345556679999999999998632111 000000
Q ss_pred --ccccee---e--cCCCCCC-CCCCCcEEEEE-eCcEEEEEEcccc----CC------CCCChhHHHHHhhhhhccC
Q 044242 188 --KPYSHR---Y--HVPYRAS-GSTAPFWYSIK-RASAYIIVLSSYS----AY------GKDVLLPTVINKNFKLHNC 246 (247)
Q Consensus 188 --~~y~~~---f--~~p~~~~-~~~~~~~Ysf~-~G~v~fi~lds~~----~~------~~~~~Q~~WL~~dL~~~~r 246 (247)
..|.+. + .+|...- ....+.+|.-. +++.++|+||+.. ++ ....+|++|+..+|.++..
T Consensus 279 ~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~ 356 (577)
T KOG3770|consen 279 QLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAES 356 (577)
T ss_pred hhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHh
Confidence 011111 1 1343211 11234556544 6789999999942 11 1246889999999987643
No 34
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.29 E-value=1.1e-06 Score=68.10 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=37.5
Q ss_pred eEEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccc
Q 044242 99 YSFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
.|++++||.|... ..++++.+...++|+|+++||++.. .++.+.++.+ |++.+.||||..
T Consensus 1 Mki~~~sD~H~~~---~~~~~~~~~~~~~d~vi~~GDi~~~-----------~~~~~~~~~~----~~~~v~GNHD~~ 60 (156)
T PF12850_consen 1 MKIAVISDLHGNL---DALEAVLEYINEPDFVIILGDIFDP-----------EEVLELLRDI----PVYVVRGNHDNW 60 (156)
T ss_dssp EEEEEEE--TTTH---HHHHHHHHHHTTESEEEEES-SCSH-----------HHHHHHHHHH----EEEEE--CCHST
T ss_pred CEEEEEeCCCCCh---hHHHHHHHHhcCCCEEEECCCchhH-----------HHHHHHHhcC----CEEEEeCCcccc
Confidence 4899999999853 2344444433479999999998762 3344444443 999999999964
No 35
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.29 E-value=2.1e-06 Score=70.98 Aligned_cols=70 Identities=9% Similarity=0.105 Sum_probs=48.6
Q ss_pred CCeEEEEEeccCCCCCchHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-cCceEEcCCCC
Q 044242 97 VPYSFGLIGDLGQSYDSNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-YQPWIWTAGNH 173 (247)
Q Consensus 97 ~~~~f~~~gD~~~~~~~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~~P~~~~~GNH 173 (247)
++-|+++++|+|.. ...++++.+.. .++|+|+++||+++... ..+++...++.+.. .+|++.++|||
T Consensus 3 ~~~kIl~iSDiHgn---~~~le~l~~~~~~~~~D~vv~~GDl~~~g~-------~~~~~~~~l~~l~~l~~pv~~V~GNh 72 (224)
T cd07388 3 TVRYVLATSNPKGD---LEALEKLVGLAPETGADAIVLIGNLLPKAA-------KSEDYAAFFRILGEAHLPTFYVPGPQ 72 (224)
T ss_pred ceeEEEEEEecCCC---HHHHHHHHHHHhhcCCCEEEECCCCCCCCC-------CHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 35689999999964 34455544422 48999999999998631 12344444555533 47999999999
Q ss_pred ccc
Q 044242 174 EID 176 (247)
Q Consensus 174 E~~ 176 (247)
|..
T Consensus 73 D~~ 75 (224)
T cd07388 73 DAP 75 (224)
T ss_pred ChH
Confidence 974
No 36
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=2.3e-06 Score=72.23 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=49.1
Q ss_pred eEEEEEeccCCCCCc---------hHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-c-Cc
Q 044242 99 YSFGLIGDLGQSYDS---------NVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-Y-QP 165 (247)
Q Consensus 99 ~~f~~~gD~~~~~~~---------~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~-~P 165 (247)
+||++++|+|..... ...++++.+.. .++|+||++||+.+..... ......+.+.++.+.. . +|
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~---~~~~~~~~~~l~~l~~~~~i~ 77 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPP---AEAQELFNAFFRNLSDANPIP 77 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCC---HHHHHHHHHHHHHHHhcCCce
Confidence 489999999975421 12344443321 4799999999999864321 1122334455556544 3 89
Q ss_pred eEEcCCCCcccc
Q 044242 166 WIWTAGNHEIDF 177 (247)
Q Consensus 166 ~~~~~GNHE~~~ 177 (247)
++.++||||...
T Consensus 78 v~~i~GNHD~~~ 89 (253)
T TIGR00619 78 IVVISGNHDSAQ 89 (253)
T ss_pred EEEEccCCCChh
Confidence 999999999853
No 37
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.19 E-value=5.5e-06 Score=69.43 Aligned_cols=77 Identities=19% Similarity=0.139 Sum_probs=47.3
Q ss_pred EEEEEeccCCCCCchH----HHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhc-CceEEcCCCCc
Q 044242 100 SFGLIGDLGQSYDSNV----TLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAY-QPWIWTAGNHE 174 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~----~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~-~P~~~~~GNHE 174 (247)
|+++++|+|....... .++.+.....++|+|+++||+++................+.++.+... +|++.++||||
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD 81 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRD 81 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 7899999997643222 222232222479999999999974210000011123344555666554 89999999999
Q ss_pred cc
Q 044242 175 ID 176 (247)
Q Consensus 175 ~~ 176 (247)
..
T Consensus 82 ~~ 83 (241)
T PRK05340 82 FL 83 (241)
T ss_pred hh
Confidence 74
No 38
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.18 E-value=5e-06 Score=74.54 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=31.7
Q ss_pred CeEEEEEeccCCCCC---------chHHHHHHHhCC--CCCCeEEEeccccccCC
Q 044242 98 PYSFGLIGDLGQSYD---------SNVTLTHYERNP--RKGQTLLFVGDLSYADI 141 (247)
Q Consensus 98 ~~~f~~~gD~~~~~~---------~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~ 141 (247)
.+||++++|+|.+.. ...+++++++.. .++|+||++||+.+...
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~ 57 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENK 57 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCC
Confidence 589999999998631 123445544322 48999999999998754
No 39
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.16 E-value=2.3e-06 Score=67.39 Aligned_cols=67 Identities=21% Similarity=0.451 Sum_probs=41.6
Q ss_pred EEEEeccCCCCCchHH-HHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccc
Q 044242 101 FGLIGDLGQSYDSNVT-LTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~-~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
|++++|+|........ +...... .++|+++++||+++... ...+...........|++.++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~-~~~d~li~~GDi~~~~~--------~~~~~~~~~~~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIA-PDADILVLAGDIGYLTD--------APRFAPLLLALKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCC-CCCCEEEECCCCCCCcc--------hHHHHHHHHhhcCCccEEEeCCCcceE
Confidence 5789999975422111 1111122 58999999999997532 122222233344568999999999974
No 40
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.16 E-value=4.1e-06 Score=75.14 Aligned_cols=77 Identities=17% Similarity=0.087 Sum_probs=50.4
Q ss_pred eEEEEEeccCCCCC----------chHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhh-hcCc
Q 044242 99 YSFGLIGDLGQSYD----------SNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSA-AYQP 165 (247)
Q Consensus 99 ~~f~~~gD~~~~~~----------~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~-~~~P 165 (247)
+||++++|+|.+.. ....+..+++.. .++||||++||+.+..... ...-..+.+.+..+. ..+|
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps---~~a~~~~~~~l~~l~~~~Ip 77 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPS---PRALKLFLEALRRLKDAGIP 77 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCC---HHHHHHHHHHHHHhccCCCc
Confidence 48999999998721 112232222211 4889999999999875422 122344555566554 3799
Q ss_pred eEEcCCCCccccC
Q 044242 166 WIWTAGNHEIDFY 178 (247)
Q Consensus 166 ~~~~~GNHE~~~~ 178 (247)
++.+.||||....
T Consensus 78 v~~I~GNHD~~~~ 90 (390)
T COG0420 78 VVVIAGNHDSPSR 90 (390)
T ss_pred EEEecCCCCchhc
Confidence 9999999998643
No 41
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.13 E-value=8.4e-06 Score=63.71 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=42.2
Q ss_pred eEEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccc
Q 044242 99 YSFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
.|+++++|+|......+.+.++.+...++|.|+|+||++.. +..+.+..+ ..|++.+.||||..
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~------------~~~~~l~~~--~~~~~~V~GN~D~~ 64 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTSP------------FVLKEFEDL--AAKVIAVRGNNDGE 64 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCCH------------HHHHHHHHh--CCceEEEccCCCch
Confidence 37999999997543223344444443489999999999821 122223222 45899999999974
No 42
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.08 E-value=7.9e-06 Score=65.90 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhh---hcCceEEcCCCCcccc
Q 044242 125 RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSA---AYQPWIWTAGNHEIDF 177 (247)
Q Consensus 125 ~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~---~~~P~~~~~GNHE~~~ 177 (247)
-+||+|+++||+++.+... ....|.++.+.+..+. ..+|++.++||||+..
T Consensus 41 l~PD~Vi~lGDL~D~G~~~--~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~ 94 (195)
T cd08166 41 VQPDIVIFLGDLMDEGSIA--NDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGG 94 (195)
T ss_pred cCCCEEEEeccccCCCCCC--CHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCC
Confidence 4899999999999986532 2233444444444432 3689999999999974
No 43
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.08 E-value=6.3e-06 Score=65.48 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=40.0
Q ss_pred HHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-------cCceEEcCCCCccccC
Q 044242 116 TLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-------YQPWIWTAGNHEIDFY 178 (247)
Q Consensus 116 ~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-------~~P~~~~~GNHE~~~~ 178 (247)
.+..+++. .+||+|+++||+++..... ....|.+..+.+..+.. .+|++.++||||+...
T Consensus 36 ~~~~~i~~-~~pd~vi~lGDl~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~~ 102 (171)
T cd07384 36 AFKTALQR-LKPDVVLFLGDLFDGGRIA--DSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGYG 102 (171)
T ss_pred HHHHHHHh-cCCCEEEEeccccCCcEeC--CHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCCC
Confidence 34445554 5899999999999864321 11345555544444432 6899999999999754
No 44
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.07 E-value=8.9e-06 Score=67.67 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=42.3
Q ss_pred eEEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccccC
Q 044242 99 YSFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEIDFY 178 (247)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~~~ 178 (247)
+|++++||+|.... ....+ .++. .+||+|+++||++... .+..+.+..+ ..|++.++||||....
T Consensus 1 ~rIa~isDiHg~~~-~~~~~-~l~~-~~pD~Vl~~GDi~~~~----------~~~~~~l~~l--~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 1 LRIAIVGDVHGQWD-LEDIK-ALHL-LQPDLVLFVGDFGNES----------VQLVRAISSL--PLPKAVILGNHDAWYD 65 (238)
T ss_pred CEEEEEecCCCCch-HHHHH-HHhc-cCCCEEEECCCCCcCh----------HHHHHHHHhC--CCCeEEEcCCCccccc
Confidence 58999999996532 22223 3333 3799999999997531 1222333222 4789999999998653
No 45
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.07 E-value=6.6e-06 Score=62.58 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=40.1
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc-eEEcCCCCcccc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP-WIWTAGNHEIDF 177 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P-~~~~~GNHE~~~ 177 (247)
||+++||+|.... ... ..++|+++++||+++... ....+.+.+.+..+ ..| ++.++||||...
T Consensus 1 ~i~~isD~H~~~~-------~~~-~~~~D~vi~~GD~~~~~~-----~~~~~~~~~~l~~~--~~~~~~~v~GNHD~~~ 64 (135)
T cd07379 1 RFVCISDTHSRHR-------TIS-IPDGDVLIHAGDLTERGT-----LEELQKFLDWLKSL--PHPHKIVIAGNHDLTL 64 (135)
T ss_pred CEEEEeCCCCCCC-------cCc-CCCCCEEEECCCCCCCCC-----HHHHHHHHHHHHhC--CCCeEEEEECCCCCcC
Confidence 5899999997542 122 258999999999987532 12223333334333 233 568999999854
No 46
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.07 E-value=7.5e-06 Score=64.05 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=37.6
Q ss_pred HHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh---cCceEEcCCCCcccc
Q 044242 119 HYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA---YQPWIWTAGNHEIDF 177 (247)
Q Consensus 119 ~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~---~~P~~~~~GNHE~~~ 177 (247)
.+++. .+||+|+++||+++..... ....|.++...+..+.+ .+|++.++||||...
T Consensus 32 ~~i~~-~~pd~vv~~GDl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 32 TSLWL-LQPDVVFVLGDLFDEGKWS--TDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred HHHHh-cCCCEEEECCCCCCCCccC--CHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 34444 4899999999999864311 12345555544444432 589999999999964
No 47
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.06 E-value=8e-06 Score=63.47 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=43.3
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
|+++++|+|... ..++++.+...++|.|+++||+++.... .. +....|++.++||||..
T Consensus 1 ~i~~isD~H~~~---~~~~~~~~~~~~~d~ii~~GD~~~~~~~-----~~----------~~~~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSL---ELLEKALELFGDVDLIIHAGDVLYPGPL-----NE----------LELKAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCH---HHHHHHHHHhcCCCEEEECCcccccccc-----ch----------hhcCCcEEEEeCCCCCc
Confidence 588999999742 4566666655459999999999976431 11 33467899999999985
No 48
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.05 E-value=1.5e-05 Score=66.34 Aligned_cols=75 Identities=21% Similarity=0.206 Sum_probs=46.3
Q ss_pred EEEeccCCCCCc----hHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-cCceEEcCCCCccc
Q 044242 102 GLIGDLGQSYDS----NVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-YQPWIWTAGNHEID 176 (247)
Q Consensus 102 ~~~gD~~~~~~~----~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~~P~~~~~GNHE~~ 176 (247)
++++|+|..... ...++.+.+...++|+|+++||+++................+.++.+.. .+|++.++||||..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence 578999976432 1234444443247999999999997421000001112344455666655 48999999999985
No 49
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.00 E-value=1e-05 Score=72.82 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=46.6
Q ss_pred eEEEEEeccCCCCC----ch-----HHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-cCce
Q 044242 99 YSFGLIGDLGQSYD----SN-----VTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-YQPW 166 (247)
Q Consensus 99 ~~f~~~gD~~~~~~----~~-----~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~~P~ 166 (247)
+||++++|+|.+.. .. ..++.+++.. .++|+||++||+.+..... ......+.+.+..+.. .+|+
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~---~~a~~~~~~~l~~L~~~~~~v 77 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPP---SYARELYNRFVVNLQQTGCQL 77 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCc---HHHHHHHHHHHHHHHhcCCcE
Confidence 48999999998531 11 1233333211 4899999999999764311 1111223334444433 5899
Q ss_pred EEcCCCCcccc
Q 044242 167 IWTAGNHEIDF 177 (247)
Q Consensus 167 ~~~~GNHE~~~ 177 (247)
+.++||||...
T Consensus 78 ~~I~GNHD~~~ 88 (407)
T PRK10966 78 VVLAGNHDSVA 88 (407)
T ss_pred EEEcCCCCChh
Confidence 99999999853
No 50
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.95 E-value=1.9e-05 Score=69.53 Aligned_cols=75 Identities=17% Similarity=0.046 Sum_probs=46.5
Q ss_pred eEEEEEeccCCCCCc---------hHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHH--HHHhh-hcC
Q 044242 99 YSFGLIGDLGQSYDS---------NVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRF--VERSA-AYQ 164 (247)
Q Consensus 99 ~~f~~~gD~~~~~~~---------~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~--~~~~~-~~~ 164 (247)
+||++++|+|.+... ...++++++.. .++|+||++||+.+..... ..... .+... ++.+. ..+
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~--~~~~~-~~~~~~l~~~L~~~gi 77 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAI--TQNTM-NFVREKIFDLLKEAGI 77 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCC--CHHHH-HHHHHHHHHHHHHCCC
Confidence 489999999976321 12344443221 4899999999999764211 11111 23322 33443 269
Q ss_pred ceEEcCCCCccc
Q 044242 165 PWIWTAGNHEID 176 (247)
Q Consensus 165 P~~~~~GNHE~~ 176 (247)
|++.++||||..
T Consensus 78 ~v~~I~GNHD~~ 89 (340)
T PHA02546 78 TLHVLVGNHDMY 89 (340)
T ss_pred eEEEEccCCCcc
Confidence 999999999974
No 51
>PRK09453 phosphodiesterase; Provisional
Probab=97.92 E-value=3.1e-05 Score=62.01 Aligned_cols=73 Identities=15% Similarity=0.011 Sum_probs=42.4
Q ss_pred eEEEEEeccCCCCCchHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-cCceEEcCCCCcc
Q 044242 99 YSFGLIGDLGQSYDSNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-YQPWIWTAGNHEI 175 (247)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~~P~~~~~GNHE~ 175 (247)
.|+++++|+|... ..++++.+.. .++|.++|+||+++..... .. ..+....+.++.+.. ..|++.+.||||.
T Consensus 1 mri~viSD~Hg~~---~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~v~~V~GNhD~ 75 (182)
T PRK09453 1 MKLMFASDTHGSL---PATEKALELFAQSGADWLVHLGDVLYHGPRN-PL-PEGYAPKKVAELLNAYADKIIAVRGNCDS 75 (182)
T ss_pred CeEEEEEeccCCH---HHHHHHHHHHHhcCCCEEEEcccccccCcCC-CC-ccccCHHHHHHHHHhcCCceEEEccCCcc
Confidence 3799999999642 2333333322 4899999999999743210 00 000011122333322 3589999999996
Q ss_pred c
Q 044242 176 D 176 (247)
Q Consensus 176 ~ 176 (247)
.
T Consensus 76 ~ 76 (182)
T PRK09453 76 E 76 (182)
T ss_pred h
Confidence 4
No 52
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=97.88 E-value=7.7e-05 Score=63.97 Aligned_cols=75 Identities=15% Similarity=0.070 Sum_probs=56.9
Q ss_pred CCCeEEEEEeccCCCCCch---HHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCC
Q 044242 96 DVPYSFGLIGDLGQSYDSN---VTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGN 172 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~~---~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GN 172 (247)
..+++++.++|.|...... +.+.++... .+|+|+..||+++... ......+.+.++++.+..|++.+.||
T Consensus 42 ~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~--~~DlivltGD~~~~~~-----~~~~~~~~~~L~~L~~~~gv~av~GN 114 (284)
T COG1408 42 LQGLKIVQLSDLHSLPFREEKLALLIAIANE--LPDLIVLTGDYVDGDR-----PPGVAALALFLAKLKAPLGVFAVLGN 114 (284)
T ss_pred cCCeEEEEeehhhhchhhHHHHHHHHHHHhc--CCCEEEEEeeeecCCC-----CCCHHHHHHHHHhhhccCCEEEEecc
Confidence 4679999999999865331 223334343 5699999999999522 24567788889999999999999999
Q ss_pred Ccccc
Q 044242 173 HEIDF 177 (247)
Q Consensus 173 HE~~~ 177 (247)
||+..
T Consensus 115 Hd~~~ 119 (284)
T COG1408 115 HDYGV 119 (284)
T ss_pred ccccc
Confidence 99964
No 53
>PHA02239 putative protein phosphatase
Probab=97.76 E-value=6.8e-05 Score=62.61 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=41.8
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC----CCCCeEEEeccccccCCCCCCCCcchhhHHHH-HHHhhhcCceEEcCCCCc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP----RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRF-VERSAAYQPWIWTAGNHE 174 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~----~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~-~~~~~~~~P~~~~~GNHE 174 (247)
+++++||+|... ..++++.+.+ ...|.++++||+++.+.. ..+-... ++.+....+++.++||||
T Consensus 2 ~~~~IsDIHG~~---~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~-------s~~v~~~l~~~~~~~~~~~~l~GNHE 71 (235)
T PHA02239 2 AIYVVPDIHGEY---QKLLTIMDKINNERKPEETIVFLGDYVDRGKR-------SKDVVNYIFDLMSNDDNVVTLLGNHD 71 (235)
T ss_pred eEEEEECCCCCH---HHHHHHHHHHhhcCCCCCEEEEecCcCCCCCC-------hHHHHHHHHHHhhcCCCeEEEECCcH
Confidence 689999999642 3344444432 235999999999986431 1222222 222223457889999999
Q ss_pred cc
Q 044242 175 ID 176 (247)
Q Consensus 175 ~~ 176 (247)
..
T Consensus 72 ~~ 73 (235)
T PHA02239 72 DE 73 (235)
T ss_pred HH
Confidence 74
No 54
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.76 E-value=7.9e-05 Score=62.15 Aligned_cols=66 Identities=26% Similarity=0.314 Sum_probs=43.4
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC----C--------CCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceE
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP----R--------KGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWI 167 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~----~--------~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~ 167 (247)
|++++||+|.. ...|+++++.+ . +.|.++++||+++.+. ...+-.+.+..+...-.+.
T Consensus 2 ~i~vigDIHG~---~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~-------~s~evl~~l~~l~~~~~~~ 71 (234)
T cd07423 2 PFDIIGDVHGC---YDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGP-------DSPEVLRLVMSMVAAGAAL 71 (234)
T ss_pred CeEEEEECCCC---HHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCC-------CHHHHHHHHHHHhhCCcEE
Confidence 68999999974 34566666543 1 2589999999998643 1122233333333334577
Q ss_pred EcCCCCcc
Q 044242 168 WTAGNHEI 175 (247)
Q Consensus 168 ~~~GNHE~ 175 (247)
.+.||||.
T Consensus 72 ~v~GNHE~ 79 (234)
T cd07423 72 CVPGNHDN 79 (234)
T ss_pred EEECCcHH
Confidence 89999997
No 55
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.72 E-value=5.3e-05 Score=60.14 Aligned_cols=48 Identities=21% Similarity=0.177 Sum_probs=32.2
Q ss_pred CCCCeEEEeccccccCCCCCCCCcchhhHHH--HHHHhhhcCceEEcCCCCcccc
Q 044242 125 RKGQTLLFVGDLSYADIYPCHDNNRWDTWGR--FVERSAAYQPWIWTAGNHEIDF 177 (247)
Q Consensus 125 ~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~--~~~~~~~~~P~~~~~GNHE~~~ 177 (247)
.++|.++++||+++.... ..+..+.. ........+|++.++||||...
T Consensus 40 ~~~d~lii~GDl~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 40 YGPERLIILGDLKHSFGG-----LSRQEFEEVAFLRLLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred cCCCEEEEeCcccccccc-----cCHHHHHHHHHHHhccCCCeEEEEcccCccch
Confidence 489999999999976431 12222221 2233345789999999999864
No 56
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.69 E-value=0.0001 Score=62.91 Aligned_cols=65 Identities=25% Similarity=0.190 Sum_probs=43.4
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC---CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP---RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~---~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
+++++||+|.. ...++++++.. .+.|.++++||+++.+.. -.+-.+.+..+ ..++..+.||||..
T Consensus 2 ~~~vIGDIHG~---~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~-------s~~vl~~l~~l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 2 ATYAIGDIQGC---YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPD-------SLEVLRFVKSL--GDSAVTVLGNHDLH 69 (275)
T ss_pred cEEEEEccCCC---HHHHHHHHHhcCCCCCCCEEEEeCCccCCCcC-------HHHHHHHHHhc--CCCeEEEecChhHH
Confidence 57899999974 34566666643 367999999999986431 12222333322 24678899999973
No 57
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.66 E-value=8.8e-05 Score=60.68 Aligned_cols=63 Identities=21% Similarity=0.072 Sum_probs=42.6
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC---CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP---RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~---~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
|++++||+|.. ...++++.+.. .++|.++++||+++.+.. . . +.++.+.. .+++.+.||||..
T Consensus 2 ri~~isDiHg~---~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~-----~--~---~~~~~l~~-~~~~~v~GNhe~~ 67 (207)
T cd07424 2 RDFVVGDIHGH---YSLLQKALDAVGFDPARDRLISVGDLIDRGPE-----S--L---ACLELLLE-PWFHAVRGNHEQM 67 (207)
T ss_pred CEEEEECCCCC---HHHHHHHHHHcCCCCCCCEEEEeCCcccCCCC-----H--H---HHHHHHhc-CCEEEeECCChHH
Confidence 68999999964 34566665543 358999999999986431 1 1 23333332 4688899999974
No 58
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.56 E-value=0.00023 Score=59.80 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=42.7
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC-----------CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEE
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP-----------RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIW 168 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~-----------~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~ 168 (247)
|+.++||+|.. ...+.++++.. ++-|-++++||+++.+.. + .+-.+.+..+...-++++
T Consensus 2 ~~~vIGDIHG~---~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~-----S--~~vl~~~~~~~~~~~~~~ 71 (245)
T PRK13625 2 KYDIIGDIHGC---YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPH-----S--LRMIEIVWELVEKKAAYY 71 (245)
T ss_pred ceEEEEECccC---HHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcC-----h--HHHHHHHHHHhhCCCEEE
Confidence 68899999974 34566666542 124789999999987431 1 122233333333447889
Q ss_pred cCCCCcc
Q 044242 169 TAGNHEI 175 (247)
Q Consensus 169 ~~GNHE~ 175 (247)
+.||||.
T Consensus 72 l~GNHE~ 78 (245)
T PRK13625 72 VPGNHCN 78 (245)
T ss_pred EeCccHH
Confidence 9999996
No 59
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.55 E-value=0.00018 Score=59.02 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=42.8
Q ss_pred EEEeccCCCCCchHHHHHHHhCC----------CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhh-----hcCce
Q 044242 102 GLIGDLGQSYDSNVTLTHYERNP----------RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSA-----AYQPW 166 (247)
Q Consensus 102 ~~~gD~~~~~~~~~~~~~~~~~~----------~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~-----~~~P~ 166 (247)
+++||+|.. ...++++++.. .+.|.++++||+++.+... .+..+.+..+. ...++
T Consensus 1 ~vi~DIHG~---~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~-------~~vl~~l~~l~~~~~~~~~~v 70 (208)
T cd07425 1 VAIGDLHGD---LDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDV-------IEILWLLYKLEQEAAKAGGKV 70 (208)
T ss_pred CEEeCccCC---HHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCH-------HHHHHHHHHHHHHHHhcCCeE
Confidence 379999974 45666666543 2579999999999864311 22233332221 24679
Q ss_pred EEcCCCCccc
Q 044242 167 IWTAGNHEID 176 (247)
Q Consensus 167 ~~~~GNHE~~ 176 (247)
+++.||||..
T Consensus 71 ~~l~GNHE~~ 80 (208)
T cd07425 71 HFLLGNHELM 80 (208)
T ss_pred EEeeCCCcHH
Confidence 9999999985
No 60
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.52 E-value=0.00022 Score=58.82 Aligned_cols=62 Identities=19% Similarity=0.122 Sum_probs=41.8
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC---CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCcc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP---RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEI 175 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~---~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~ 175 (247)
|++++||+|.. ...++++.+.. .+.|.++++||+++.+... . +.++-+. .-.++.+.||||.
T Consensus 16 ri~visDiHg~---~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~-------~---~~l~~l~-~~~~~~v~GNHE~ 80 (218)
T PRK09968 16 HIWVVGDIHGE---YQLLQSRLHQLSFCPETDLLISVGDNIDRGPES-------L---NVLRLLN-QPWFISVKGNHEA 80 (218)
T ss_pred eEEEEEeccCC---HHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCH-------H---HHHHHHh-hCCcEEEECchHH
Confidence 89999999874 34556555543 3679999999999864311 1 2233222 2346789999997
No 61
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.51 E-value=0.00022 Score=58.84 Aligned_cols=62 Identities=24% Similarity=0.120 Sum_probs=42.3
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC---CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCcc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP---RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEI 175 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~---~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~ 175 (247)
|++++||+|.. ...++++++.+ .+.|-++++||+++.+..+ . +.++-+. ...+..+.||||.
T Consensus 18 ri~vigDIHG~---~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s-------~---~vl~~l~-~~~~~~v~GNHE~ 82 (218)
T PRK11439 18 HIWLVGDIHGC---FEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQS-------L---RCLQLLE-EHWVRAVRGNHEQ 82 (218)
T ss_pred eEEEEEcccCC---HHHHHHHHHhcCCCcccCEEEEcCcccCCCcCH-------H---HHHHHHH-cCCceEeeCchHH
Confidence 89999999974 45666666654 2578999999999874311 1 2333332 2346689999995
No 62
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.50 E-value=0.00028 Score=58.37 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=41.7
Q ss_pred EEEEeccCCCCCchHHHHHHHhCC----------CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcC
Q 044242 101 FGLIGDLGQSYDSNVTLTHYERNP----------RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTA 170 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~~~~~~~~~----------~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~ 170 (247)
+.++||+|.. ...++++++.+ ...|.++++||+++.+..+ .+-.+.+..+...-..+.+.
T Consensus 1 ~~vIGDIHG~---~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S-------~~vl~~l~~l~~~~~~~~l~ 70 (222)
T cd07413 1 YDFIGDIHGH---AEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEI-------RELLEIVKSMVDAGHALAVM 70 (222)
T ss_pred CEEEEeccCC---HHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCH-------HHHHHHHHHhhcCCCEEEEE
Confidence 3689999974 34566665543 1357999999999874311 22233333333233578899
Q ss_pred CCCccc
Q 044242 171 GNHEID 176 (247)
Q Consensus 171 GNHE~~ 176 (247)
||||..
T Consensus 71 GNHE~~ 76 (222)
T cd07413 71 GNHEFN 76 (222)
T ss_pred ccCcHH
Confidence 999974
No 63
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=97.49 E-value=0.00026 Score=56.58 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=40.4
Q ss_pred EEEEEeccCCCCCc---hHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccc
Q 044242 100 SFGLIGDLGQSYDS---NVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 100 ~f~~~gD~~~~~~~---~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
++++++|+|..... ...+.++.+. .++|.|+|+||++.. ..+ +.++.+ ..|++.+.||||..
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~-~~~d~iih~GDi~~~--------~~~----~~l~~~--~~~~~~V~GN~D~~ 65 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP-GKIQHVLCTGNLCSK--------ETY----DYLKTI--APDVHIVRGDFDEN 65 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc-CCCCEEEECCCCCCH--------HHH----HHHHhh--CCceEEEECCCCcc
Confidence 47899999954322 1234455554 479999999999762 122 222222 24789999999964
No 64
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.47 E-value=0.00033 Score=58.70 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=45.0
Q ss_pred EEEeccCCCCCc--hHHHHHHHh---CC----CCCCeEEEeccccccCCCCCCCC---------cchhhHHHHHHHhhhc
Q 044242 102 GLIGDLGQSYDS--NVTLTHYER---NP----RKGQTLLFVGDLSYADIYPCHDN---------NRWDTWGRFVERSAAY 163 (247)
Q Consensus 102 ~~~gD~~~~~~~--~~~~~~~~~---~~----~~~dfvl~~GD~~y~~~~~~~~~---------~~w~~~~~~~~~~~~~ 163 (247)
++++|.|..... ...++.+.+ .. .++|.++++||+++......... +.+..+.+.++.+.+.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 578999875421 222233332 21 25799999999998632100000 1123344556666667
Q ss_pred CceEEcCCCCccc
Q 044242 164 QPWIWTAGNHEID 176 (247)
Q Consensus 164 ~P~~~~~GNHE~~ 176 (247)
+|++.++||||..
T Consensus 82 ~~v~~ipGNHD~~ 94 (243)
T cd07386 82 IKIIIIPGNHDAV 94 (243)
T ss_pred CeEEEeCCCCCcc
Confidence 9999999999985
No 65
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.37 E-value=0.00045 Score=57.30 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=47.0
Q ss_pred eEEEEEeccCCCCCc--------------hHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh
Q 044242 99 YSFGLIGDLGQSYDS--------------NVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA 162 (247)
Q Consensus 99 ~~f~~~gD~~~~~~~--------------~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~ 162 (247)
-+.++++|.|....+ .++++++.+.. .++|.+|++||+....... ..+..+.+.++.+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~----~~~~~~~~~l~~~-- 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKG----LEWRFIREFIEVT-- 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh----HHHHHHHHHHHhc--
Confidence 467899999986421 13455554422 4799999999999764411 2344444444443
Q ss_pred cCceEEcCCCCccc
Q 044242 163 YQPWIWTAGNHEID 176 (247)
Q Consensus 163 ~~P~~~~~GNHE~~ 176 (247)
..|++.++||||..
T Consensus 89 ~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 89 FRDLILIRGNHDAL 102 (225)
T ss_pred CCcEEEECCCCCCc
Confidence 35899999999974
No 66
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.36 E-value=0.0008 Score=62.37 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=50.0
Q ss_pred CCCeEEEEEeccCCCCCc--hHHHHHHHh----C-------CCCCCeEEEeccccccCCCCCC-CC--------cchhhH
Q 044242 96 DVPYSFGLIGDLGQSYDS--NVTLTHYER----N-------PRKGQTLLFVGDLSYADIYPCH-DN--------NRWDTW 153 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~--~~~~~~~~~----~-------~~~~dfvl~~GD~~y~~~~~~~-~~--------~~w~~~ 153 (247)
..++++++++|.|.+... ...+..+++ . ..+++.++++||++...+.... .. .+.+.+
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l 320 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAA 320 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHH
Confidence 356899999999976431 122232221 1 1368999999999975321100 00 011233
Q ss_pred HHHHHHhhhcCceEEcCCCCccc
Q 044242 154 GRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 154 ~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
.+.+..+...+|++.++||||..
T Consensus 321 ~~~L~~L~~~i~V~~ipGNHD~~ 343 (504)
T PRK04036 321 AEYLKQIPEDIKIIISPGNHDAV 343 (504)
T ss_pred HHHHHhhhcCCeEEEecCCCcch
Confidence 44556666678999999999975
No 67
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.33 E-value=0.00059 Score=53.91 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=32.6
Q ss_pred HHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCcccc
Q 044242 117 LTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEIDF 177 (247)
Q Consensus 117 ~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~~ 177 (247)
++.+.+...++|.|+++||++..... ..+.+.++.+ ..|++.++||||...
T Consensus 33 i~~~~~~~~~~d~vi~~GDl~~~~~~--------~~~~~~l~~~--~~~~~~v~GNHD~~~ 83 (168)
T cd07390 33 IRNWNETVGPDDTVYHLGDFSFGGKA--------GTELELLSRL--NGRKHLIKGNHDSSL 83 (168)
T ss_pred HHHHhhhcCCCCEEEEeCCCCCCCCh--------HHHHHHHHhC--CCCeEEEeCCCCchh
Confidence 33444444578999999999986431 1112233332 368999999999753
No 68
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.27 E-value=0.00028 Score=53.29 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=37.4
Q ss_pred EEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccc
Q 044242 102 GLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 102 ~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
++++|+|.. ...++++.....++|+++++||+... .. ..+..+ ...|++.+.||||..
T Consensus 1 ~viSDtH~~---~~~~~~~~~~~~~~d~ii~~GD~~~~---------~~----~~~~~~-~~~~~~~V~GN~D~~ 58 (129)
T cd07403 1 LVISDTESP---ALYSPEIKVRLEGVDLILSAGDLPKE---------YL----EYLVTM-LNVPVYYVHGNHDVD 58 (129)
T ss_pred CeeccccCc---cccchHHHhhCCCCCEEEECCCCChH---------HH----HHHHHH-cCCCEEEEeCCCccC
Confidence 478999843 23444455444689999999997421 11 222222 356889999999953
No 69
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.27 E-value=0.00082 Score=56.84 Aligned_cols=63 Identities=24% Similarity=0.179 Sum_probs=41.5
Q ss_pred EEEeccCCCCCchHHHHHHHhCC---CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccc
Q 044242 102 GLIGDLGQSYDSNVTLTHYERNP---RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 102 ~~~gD~~~~~~~~~~~~~~~~~~---~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
.++||+|.. ...++++++.+ .+.|.++++||+++.+.. -.+-.+.+..+. ..+..+.||||..
T Consensus 2 yvIGDIHG~---~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~-------s~evl~~l~~l~--~~v~~VlGNHD~~ 67 (257)
T cd07422 2 YAIGDIQGC---YDELQRLLEKINFDPAKDRLWLVGDLVNRGPD-------SLETLRFVKSLG--DSAKTVLGNHDLH 67 (257)
T ss_pred EEEECCCCC---HHHHHHHHHhcCCCCCCCEEEEecCcCCCCcC-------HHHHHHHHHhcC--CCeEEEcCCchHH
Confidence 579999974 35666666654 257999999999987431 122223333321 3577899999974
No 70
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.23 E-value=0.00074 Score=54.47 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=37.5
Q ss_pred HHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhh--------------------hcCceEEcCCCCcc
Q 044242 116 TLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSA--------------------AYQPWIWTAGNHEI 175 (247)
Q Consensus 116 ~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~--------------------~~~P~~~~~GNHE~ 175 (247)
.++.+... -+||.|+++||+... +.. .++.|.+..+-+..+. ..+|++.++||||+
T Consensus 35 ~~~~~~~~-l~Pd~V~fLGDLfd~-~w~--~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDI 110 (193)
T cd08164 35 IVSMMQFW-LKPDAVVVLGDLFSS-QWI--DDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDV 110 (193)
T ss_pred HHHHHHHh-cCCCEEEEeccccCC-Ccc--cHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccC
Confidence 34444444 599999999999965 332 2345544332222211 14899999999999
Q ss_pred ccC
Q 044242 176 DFY 178 (247)
Q Consensus 176 ~~~ 178 (247)
...
T Consensus 111 G~~ 113 (193)
T cd08164 111 GYG 113 (193)
T ss_pred CCC
Confidence 763
No 71
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=97.14 E-value=0.0013 Score=53.86 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=44.1
Q ss_pred EEEeccCCCCCch---HHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhH----HHHHHHhhhcCceEEcCCC
Q 044242 102 GLIGDLGQSYDSN---VTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTW----GRFVERSAAYQPWIWTAGN 172 (247)
Q Consensus 102 ~~~gD~~~~~~~~---~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~----~~~~~~~~~~~P~~~~~GN 172 (247)
++++|.|...... ..+..+.+.. .+++.++++||+.+..... ....+..+ ...++.+...+|++.++||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GN 78 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGD--DEVVPPAAHEVLAALLRLADRGTRVYYVPGN 78 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecC--CCCCChHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 3689999765422 2223333221 3899999999999753211 11111111 2334444567899999999
Q ss_pred Ccccc
Q 044242 173 HEIDF 177 (247)
Q Consensus 173 HE~~~ 177 (247)
||...
T Consensus 79 HD~~~ 83 (217)
T cd07398 79 HDFLL 83 (217)
T ss_pred chHHH
Confidence 99863
No 72
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.12 E-value=0.0015 Score=56.04 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=39.9
Q ss_pred EEEEEeccCCCCCchHHHHHHHh----CC----CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcC---ceEE
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYER----NP----RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQ---PWIW 168 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~----~~----~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~---P~~~ 168 (247)
+++++||+|... ..++++.+ .. ...+.+|++||+++.+.. -.+-.+.+..+...- .++.
T Consensus 3 ~iyaIGDIHG~~---d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPd-------S~eVld~L~~l~~~~~~~~vv~ 72 (304)
T cd07421 3 VVICVGDIHGYI---SKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPE-------TRKVIDFLISLPEKHPKQRHVF 72 (304)
T ss_pred eEEEEEeccCCH---HHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCC-------HHHHHHHHHHhhhcccccceEE
Confidence 688999998753 33444332 21 135689999999987431 122233333332222 4678
Q ss_pred cCCCCccc
Q 044242 169 TAGNHEID 176 (247)
Q Consensus 169 ~~GNHE~~ 176 (247)
+.||||..
T Consensus 73 LrGNHE~~ 80 (304)
T cd07421 73 LCGNHDFA 80 (304)
T ss_pred EecCChHH
Confidence 89999953
No 73
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=97.12 E-value=0.00026 Score=57.92 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=36.3
Q ss_pred CeEEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchh--------------------------
Q 044242 98 PYSFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWD-------------------------- 151 (247)
Q Consensus 98 ~~~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~-------------------------- 151 (247)
+=++++++|....-+-...+..++++ ..+|+|+++||+.-.... ...|.
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e-~~~D~~v~~G~~~~~~a~----~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPE-KGPDAVVFVGDLLKAEAR----SDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHH-HT-SEEEEES-SS-TCHH----HHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccc-cCCCEEEEeccccccchh----hhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 34788899987542222334444444 489999999999865321 12333
Q ss_pred hHHHHHHHhhhcCceEEcCCCCcc
Q 044242 152 TWGRFVERSAAYQPWIWTAGNHEI 175 (247)
Q Consensus 152 ~~~~~~~~~~~~~P~~~~~GNHE~ 175 (247)
.|++.+..+ .+|.+.+|||||-
T Consensus 80 ~ff~~L~~~--~~p~~~vPG~~Da 101 (255)
T PF14582_consen 80 KFFRILGEL--GVPVFVVPGNMDA 101 (255)
T ss_dssp HHHHHHHCC---SEEEEE--TTS-
T ss_pred HHHHHHHhc--CCcEEEecCCCCc
Confidence 333333333 7999999999997
No 74
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.10 E-value=0.0013 Score=54.04 Aligned_cols=64 Identities=20% Similarity=0.107 Sum_probs=40.7
Q ss_pred EEeccCCCCCchHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-cCceEEcCCCCccc
Q 044242 103 LIGDLGQSYDSNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-YQPWIWTAGNHEID 176 (247)
Q Consensus 103 ~~gD~~~~~~~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~~P~~~~~GNHE~~ 176 (247)
++||+|.. ...+.++++.. .+.|.+|++||+++.+.. ..+-...+..+.. ..+++.+.||||..
T Consensus 2 ~igDiHg~---~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~-------~~~~l~~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 2 VIGDIHGC---LDDLLRLLEKIGFPPNDKLIFLGDYVDRGPD-------SVEVIDLLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred EEeCCCCC---HHHHHHHHHHhCCCCCCEEEEECCEeCCCCC-------cHHHHHHHHHhcCCCCcEEEEccCchhh
Confidence 68999964 34555555543 367999999999986431 1222222222211 23788999999985
No 75
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.03 E-value=0.0018 Score=51.34 Aligned_cols=65 Identities=14% Similarity=0.023 Sum_probs=41.9
Q ss_pred eEEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCcccc
Q 044242 99 YSFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEIDF 177 (247)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~~ 177 (247)
.++++++|+|...........+... .++|+|+|+||.+..... ..+... -..+++.+.||.|...
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~-~~~d~vih~GD~~~~~~~--------~~l~~~-----~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNL-EKVDAVIHAGDSTSPFTL--------DALEGG-----LAAKLIAVRGNCDGEV 66 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhh-cCCCEEEECCCcCCccch--------HHhhcc-----cccceEEEEccCCCcc
Confidence 5899999999864211112222222 589999999999986431 111110 1468899999999963
No 76
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.99 E-value=0.001 Score=56.41 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=42.1
Q ss_pred EEEEeccCCCCCchHH---HHHHHhC-CCCCCeEEEeccccccCCCCCC-------CCcchhhHHHHHHHhh-hcCceEE
Q 044242 101 FGLIGDLGQSYDSNVT---LTHYERN-PRKGQTLLFVGDLSYADIYPCH-------DNNRWDTWGRFVERSA-AYQPWIW 168 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~---~~~~~~~-~~~~dfvl~~GD~~y~~~~~~~-------~~~~w~~~~~~~~~~~-~~~P~~~ 168 (247)
|++.||.|..- ... +..+.+. ..++|++|++||+......... ....+.+|.+.+.... ..+|.++
T Consensus 1 i~v~Gd~HG~~--~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~f 78 (262)
T cd00844 1 IAVEGCCHGEL--DKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIF 78 (262)
T ss_pred CEEEecCCccH--HHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEE
Confidence 57899998732 222 2233222 2479999999999643221100 0012344444444432 3567799
Q ss_pred cCCCCccc
Q 044242 169 TAGNHEID 176 (247)
Q Consensus 169 ~~GNHE~~ 176 (247)
+.||||..
T Consensus 79 i~GNHE~~ 86 (262)
T cd00844 79 IGGNHEAS 86 (262)
T ss_pred ECCCCCCH
Confidence 99999963
No 77
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=96.83 E-value=0.004 Score=42.41 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=41.6
Q ss_pred eeccCCCCCcEEEEEEeCCCC----CCCEEEEeccCCCCceEEEEEEEEeEecccccceEEEEEeCCCCCCCEEEEEeCc
Q 044242 3 ITQGDLVGKAVIVSWVTVDEP----GTNTVVYWSENSKQKEQAEGKIYTYKYYNYTSGYIHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 3 l~~~~~~~~~~~V~W~T~~~~----~~~~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
|.+.....+++.|+|...... ..-.|+|....+.. ....... ..-.+.+.|.||+|+|.|.+||..
T Consensus 6 l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~------~~~~~~~----~~~~~~~~i~~L~p~t~Y~~~v~a 75 (85)
T PF00041_consen 6 LSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTS------DWQEVTV----PGNETSYTITGLQPGTTYEFRVRA 75 (85)
T ss_dssp EEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSS------EEEEEEE----ETTSSEEEEESCCTTSEEEEEEEE
T ss_pred eEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccce------eeeeeee----eeeeeeeeeccCCCCCEEEEEEEE
Confidence 444454578999999999522 23467776655432 0111111 111237788999999999999974
No 78
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.79 E-value=0.0031 Score=53.73 Aligned_cols=64 Identities=25% Similarity=0.208 Sum_probs=40.7
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC---CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCcc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP---RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEI 175 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~---~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~ 175 (247)
+..++||+|.. ...++++++.+ ...|-++++||+++.+..+ .+-.+.+..+. -....+.||||.
T Consensus 2 ~~YvIGDIHGc---~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~s-------levL~~l~~l~--~~~~~VlGNHD~ 68 (279)
T TIGR00668 2 ATYLIGDLHGC---YDELQALLERVEFDPGQDTLWLTGDLVARGPGS-------LEVLRYVKSLG--DAVRLVLGNHDL 68 (279)
T ss_pred cEEEEEcccCC---HHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCH-------HHHHHHHHhcC--CCeEEEEChhHH
Confidence 35789999975 34566666654 2568999999999874311 12222332221 124579999997
No 79
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=96.71 E-value=0.003 Score=53.00 Aligned_cols=73 Identities=19% Similarity=0.083 Sum_probs=41.0
Q ss_pred eEEEEEeccCCCC------CchH----HHHHHHhCCCCCC-eEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceE
Q 044242 99 YSFGLIGDLGQSY------DSNV----TLTHYERNPRKGQ-TLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWI 167 (247)
Q Consensus 99 ~~f~~~gD~~~~~------~~~~----~~~~~~~~~~~~d-fvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~ 167 (247)
++++.++|+|... .... .++++.++ .+| +++..||++...... .+......++.+..--+-+
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~--~~~~l~v~~GD~~~~~~~~-----~~~~~~~~~~~l~~~g~d~ 73 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAE--NENTLLLDAGDNFDGSPPS-----TATKGEANIELMNALGYDA 73 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhc--CCCeEEEeCCccCCCccch-----hccCCcHHHHHHHhcCCCE
Confidence 5799999998542 1222 33444443 566 789999998764321 1111122222232222345
Q ss_pred EcCCCCccccC
Q 044242 168 WTAGNHEIDFY 178 (247)
Q Consensus 168 ~~~GNHE~~~~ 178 (247)
.++||||+...
T Consensus 74 ~~~GNHe~d~g 84 (252)
T cd00845 74 VTIGNHEFDYG 84 (252)
T ss_pred Eeecccccccc
Confidence 67899998653
No 80
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=96.60 E-value=0.0073 Score=52.68 Aligned_cols=67 Identities=18% Similarity=0.035 Sum_probs=41.2
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCCC---CCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNPR---KGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHE 174 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~~---~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE 174 (247)
++.++||+|.. ...+.++.+... .-+-+|++||+++.+.. . -+-...+-.+....| ++.+.||||
T Consensus 52 ~~~vvGDiHG~---~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~------s-~Evl~ll~~lk~~~p~~v~llRGNHE 121 (321)
T cd07420 52 QVTICGDLHGK---LDDLFLIFYKNGLPSPENPYVFNGDFVDRGKR------S-IEILIILFAFFLVYPNEVHLNRGNHE 121 (321)
T ss_pred CeEEEEeCCCC---HHHHHHHHHHcCCCCccceEEEeccccCCCCC------c-HHHHHHHHHHhhcCCCcEEEecCchh
Confidence 57899999874 345555665432 23679999999998542 1 111222222222234 677999999
Q ss_pred cc
Q 044242 175 ID 176 (247)
Q Consensus 175 ~~ 176 (247)
..
T Consensus 122 ~~ 123 (321)
T cd07420 122 DH 123 (321)
T ss_pred hh
Confidence 85
No 81
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=96.56 E-value=0.0088 Score=48.98 Aligned_cols=73 Identities=22% Similarity=0.215 Sum_probs=45.8
Q ss_pred CeEEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhh-hcCceEEcCCCCcc
Q 044242 98 PYSFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSA-AYQPWIWTAGNHEI 175 (247)
Q Consensus 98 ~~~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~-~~~P~~~~~GNHE~ 175 (247)
.+|++++.|.|....+...+..++.. .++|+++.+||++|..-.. ...-.+-. .++.+. ..+|+++++||=|-
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~-~~~D~lviaGDlt~~~~~~---~~~~~~~~-~~e~l~~~~~~v~avpGNcD~ 76 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAAD-IRADLLVIAGDLTYFHFGP---KEVAEELN-KLEALKELGIPVLAVPGNCDP 76 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhh-ccCCEEEEecceehhhcCc---hHHHHhhh-HHHHHHhcCCeEEEEcCCCCh
Confidence 58999999999865433334444444 3899999999999432211 01111100 145554 47999999999665
No 82
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.23 E-value=0.016 Score=49.38 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=41.0
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCcc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEI 175 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~ 175 (247)
+++++||+|.. ...+.++.+.. ...+-++++||+++.+... -+-...+..+.-..| ++.+.||||.
T Consensus 29 ~i~vvGDiHG~---~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s-------~e~l~~l~~lk~~~p~~v~llrGNHE~ 98 (271)
T smart00156 29 PVTVCGDIHGQ---FDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFS-------IEVILLLFALKILYPNRVVLLRGNHES 98 (271)
T ss_pred CEEEEEeCcCC---HHHHHHHHHHcCCCCCceEEEeCCccCCCCCh-------HHHHHHHHHHHhcCCCCEEEEeccccH
Confidence 58889999864 34555555432 3457899999999864311 122222222222233 6789999998
Q ss_pred c
Q 044242 176 D 176 (247)
Q Consensus 176 ~ 176 (247)
.
T Consensus 99 ~ 99 (271)
T smart00156 99 R 99 (271)
T ss_pred H
Confidence 5
No 83
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.20 E-value=0.018 Score=50.03 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=41.2
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCCC--CCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCcc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNPR--KGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEI 175 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~~--~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~ 175 (247)
+++++||+|.. ...+.++.+... ..+-++++||+++.+.. .-+-...+..+.-..| ++.+.||||.
T Consensus 44 ~i~ViGDIHG~---~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~-------s~Evi~lL~~lki~~p~~v~lLRGNHE~ 113 (305)
T cd07416 44 PVTVCGDIHGQ---FYDLLKLFEVGGSPANTRYLFLGDYVDRGYF-------SIECVLYLWALKILYPKTLFLLRGNHEC 113 (305)
T ss_pred CEEEEEeCCCC---HHHHHHHHHhcCCCCCceEEEECCccCCCCC-------hHHHHHHHHHHHhhcCCCEEEEeCCCcH
Confidence 57889999864 234555555432 34789999999987431 1122222223333344 6789999998
Q ss_pred c
Q 044242 176 D 176 (247)
Q Consensus 176 ~ 176 (247)
.
T Consensus 114 ~ 114 (305)
T cd07416 114 R 114 (305)
T ss_pred H
Confidence 5
No 84
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.05 E-value=0.022 Score=47.24 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=47.1
Q ss_pred eEEEEEeccCCCCCc--------------hH---HHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhh
Q 044242 99 YSFGLIGDLGQSYDS--------------NV---TLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSA 161 (247)
Q Consensus 99 ~~f~~~gD~~~~~~~--------------~~---~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~ 161 (247)
-+.++++|.|..... .+ .+.++++. .+|+-++.+||+-.+-+.. ....|+.....++. .
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~-~~p~~lIilGD~KH~~~~~--~~~e~~~~~~f~~~-~ 95 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIER-YGPKRLIILGDLKHEFGKS--LRQEKEEVREFLEL-L 95 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHh-cCCCEEEEcCccccccCcc--ccccHHHHHHHHHH-h
Confidence 478899999986531 11 22334444 5899999999999876532 12334433333333 3
Q ss_pred hcCceEEcCCCCcccc
Q 044242 162 AYQPWIWTAGNHEIDF 177 (247)
Q Consensus 162 ~~~P~~~~~GNHE~~~ 177 (247)
...-++.+.||||-.-
T Consensus 96 ~~~evi~i~GNHD~~i 111 (235)
T COG1407 96 DEREVIIIRGNHDNGI 111 (235)
T ss_pred ccCcEEEEeccCCCcc
Confidence 3335999999999853
No 85
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=96.02 E-value=0.019 Score=51.07 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=40.9
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCCC--CC-CeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNPR--KG-QTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHE 174 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~~--~~-dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE 174 (247)
++.++||+|.. ...+..+.+... .. +.+|++||+++.+... -+-...+..+.-..| ++.+.||||
T Consensus 67 ~i~VvGDIHG~---~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~S-------lEvl~lL~~lki~~p~~v~lLRGNHE 136 (377)
T cd07418 67 EVVVVGDVHGQ---LHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWG-------LETFLLLLSWKVLLPDRVYLLRGNHE 136 (377)
T ss_pred CEEEEEecCCC---HHHHHHHHHHhCCCCCCceEEEeccccCCCCCh-------HHHHHHHHHHhhccCCeEEEEeeecc
Confidence 58899999874 345555665432 22 4599999999864311 122222223322334 678999999
Q ss_pred cc
Q 044242 175 ID 176 (247)
Q Consensus 175 ~~ 176 (247)
..
T Consensus 137 ~~ 138 (377)
T cd07418 137 SK 138 (377)
T ss_pred cc
Confidence 85
No 86
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.93 E-value=0.025 Score=48.57 Aligned_cols=67 Identities=21% Similarity=0.181 Sum_probs=40.3
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCcc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEI 175 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~ 175 (247)
.+.++||+|.. ...+.++.+.. ...+-+|++||+++.+.. . -+-...+..+.-..| ++.+.||||.
T Consensus 43 ~i~vvGDIHG~---~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~-----s--~evl~ll~~lk~~~p~~v~llrGNHE~ 112 (285)
T cd07415 43 PVTVCGDIHGQ---FYDLLELFRVGGDPPDTNYLFLGDYVDRGYY-----S--VETFLLLLALKVRYPDRITLLRGNHES 112 (285)
T ss_pred CEEEEEeCCCC---HHHHHHHHHHcCCCCCCeEEEEeEECCCCcC-----H--HHHHHHHHHHhhcCCCcEEEEecccch
Confidence 37889999864 33444444432 244679999999986431 1 122222223322334 7889999997
Q ss_pred c
Q 044242 176 D 176 (247)
Q Consensus 176 ~ 176 (247)
.
T Consensus 113 ~ 113 (285)
T cd07415 113 R 113 (285)
T ss_pred H
Confidence 4
No 87
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=95.89 E-value=0.019 Score=52.51 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=33.8
Q ss_pred CCeEEEEEeccCCCCC---------chHHHHHH---HhCCCCCCeEEEeccccccCC
Q 044242 97 VPYSFGLIGDLGQSYD---------SNVTLTHY---ERNPRKGQTLLFVGDLSYADI 141 (247)
Q Consensus 97 ~~~~f~~~gD~~~~~~---------~~~~~~~~---~~~~~~~dfvl~~GD~~y~~~ 141 (247)
..+|+++..|.|.++. +..++..| +++ .++|+||..||+..++.
T Consensus 12 ntirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e-~~VDmiLlGGDLFHeNk 67 (646)
T KOG2310|consen 12 NTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQE-NDVDMILLGGDLFHENK 67 (646)
T ss_pred cceEEEEeecCccccccCCcccccchHHHHHHHHHHHHh-cCCcEEEecCcccccCC
Confidence 5799999999998752 34455544 344 69999999999998865
No 88
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.02 Score=47.33 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=45.3
Q ss_pred EEeccCCCCCch---HHHHHHHhC-CCCCCeEEEeccccccCCCCCCCCcchhhHHHH----HHHhhh-cCceEEcCCCC
Q 044242 103 LIGDLGQSYDSN---VTLTHYERN-PRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRF----VERSAA-YQPWIWTAGNH 173 (247)
Q Consensus 103 ~~gD~~~~~~~~---~~~~~~~~~-~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~----~~~~~~-~~P~~~~~GNH 173 (247)
+++|.|.+.... ..+-++++. ....|.++++||+++.--. +..|.+..+. +..+++ .+|++.++|||
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g----~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~ 77 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIG----DDEPPQLHRQVAQKLLRLARKGTRVYYIHGNH 77 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhc----CCcccHHHHHHHHHHHHHHhcCCeEEEecCch
Confidence 578999874322 334444444 2356999999999986431 2356655543 334444 59999999999
Q ss_pred ccc
Q 044242 174 EID 176 (247)
Q Consensus 174 E~~ 176 (247)
|.-
T Consensus 78 Dfl 80 (237)
T COG2908 78 DFL 80 (237)
T ss_pred HHH
Confidence 974
No 89
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.86 E-value=0.029 Score=48.42 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=40.4
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCcc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEI 175 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~ 175 (247)
.++++||+|.. ...+.++.+.. ...+-+|++||+++.+... -+-...+..+.-..| ++.+.||||.
T Consensus 51 ~i~viGDIHG~---~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s-------~e~i~ll~~lk~~~p~~i~llrGNHE~ 120 (293)
T cd07414 51 PLKICGDIHGQ---YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQS-------LETICLLLAYKIKYPENFFLLRGNHEC 120 (293)
T ss_pred ceEEEEecCCC---HHHHHHHHHhcCCCCcceEEEEeeEecCCCCc-------HHHHHHHHHhhhhCCCcEEEEecccch
Confidence 47889999864 33455455432 3446789999999874311 122222222222334 6789999998
Q ss_pred c
Q 044242 176 D 176 (247)
Q Consensus 176 ~ 176 (247)
.
T Consensus 121 ~ 121 (293)
T cd07414 121 A 121 (293)
T ss_pred h
Confidence 5
No 90
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=95.74 E-value=0.035 Score=48.31 Aligned_cols=66 Identities=18% Similarity=0.069 Sum_probs=38.6
Q ss_pred EEEEeccCCCCCchHHHHHHHhCCCCC----------CeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEE
Q 044242 101 FGLIGDLGQSYDSNVTLTHYERNPRKG----------QTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIW 168 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~~~~~~~~~~~~----------dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~ 168 (247)
+.++||+|.. ...+.++.+...-+ .-+|++||+++.+.. --+-...+..+....| ++.
T Consensus 50 ~~viGDIHG~---~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~-------s~evl~ll~~lk~~~p~~v~l 119 (311)
T cd07419 50 IKIFGDIHGQ---FGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSN-------SLETICLLLALKVKYPNQIHL 119 (311)
T ss_pred EEEEEeccCC---HHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCC-------hHHHHHHHHHhhhcCCCcEEE
Confidence 6779999864 34555555433211 237899999976431 1222233333332334 678
Q ss_pred cCCCCccc
Q 044242 169 TAGNHEID 176 (247)
Q Consensus 169 ~~GNHE~~ 176 (247)
+.||||..
T Consensus 120 LRGNHE~~ 127 (311)
T cd07419 120 IRGNHEDR 127 (311)
T ss_pred eccccchH
Confidence 99999974
No 91
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=95.68 E-value=0.021 Score=48.28 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=37.5
Q ss_pred eEEEEEeccCCCCC-------chHHH----HHHHhCCCCCC-eEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCce
Q 044242 99 YSFGLIGDLGQSYD-------SNVTL----THYERNPRKGQ-TLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPW 166 (247)
Q Consensus 99 ~~f~~~gD~~~~~~-------~~~~~----~~~~~~~~~~d-fvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~ 166 (247)
++++.+.|.+.-.. ....+ +++.++ +++ ++|.+||+....... .-.+.....+.+..+ .. -
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~--~~~~l~l~~GD~~~g~~~~--~~~~g~~~~~~l~~l--~~-d 73 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKE--NPNTLVLFSGDVLSPSLLS--TATKGKQMVPVLNAL--GV-D 73 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhc--CCCEEEEECCCccCCccch--hhcCCccHHHHHHhc--CC-c
Confidence 46777777762110 12233 333333 466 999999998653211 011112222333222 12 2
Q ss_pred EEcCCCCccccC
Q 044242 167 IWTAGNHEIDFY 178 (247)
Q Consensus 167 ~~~~GNHE~~~~ 178 (247)
+.++||||+..+
T Consensus 74 ~~~~GNHefd~g 85 (257)
T cd07406 74 LACFGNHEFDFG 85 (257)
T ss_pred EEeecccccccC
Confidence 558999999653
No 92
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=95.66 E-value=0.036 Score=48.37 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=39.6
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCCC---CCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNPR---KGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHE 174 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~~---~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE 174 (247)
++.++||+|.. ...+.++.+... .-+-++++||+++.+... -+-...+-.+.-..| ++.+.||||
T Consensus 61 ~~~VvGDIHG~---~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S-------~Evl~ll~~lki~~p~~v~lLRGNHE 130 (316)
T cd07417 61 KITVCGDTHGQ---FYDLLNIFELNGLPSETNPYLFNGDFVDRGSFS-------VEVILTLFAFKLLYPNHFHLNRGNHE 130 (316)
T ss_pred eeEEeecccCC---HHHHHHHHHhcCCCCccCeEEEEeeEecCCCCh-------HHHHHHHHHhhhccCCceEEEeeccc
Confidence 68899999864 345555655431 225799999999874311 111222222211223 567999999
Q ss_pred cc
Q 044242 175 ID 176 (247)
Q Consensus 175 ~~ 176 (247)
..
T Consensus 131 ~~ 132 (316)
T cd07417 131 TD 132 (316)
T ss_pred hH
Confidence 74
No 93
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=95.65 E-value=0.03 Score=47.31 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=39.1
Q ss_pred eEEEEEeccCCCCC-------chHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEc
Q 044242 99 YSFGLIGDLGQSYD-------SNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWT 169 (247)
Q Consensus 99 ~~f~~~gD~~~~~~-------~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~ 169 (247)
++++.++|+|..-. ....+..++++. .+.++++.+||+....... .........+.+..+ ...+ .+
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~--~~~~g~~~~~~ln~~--g~d~-~~ 75 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPIS--DLDKGETIIKIMNAV--GYDA-VT 75 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhh--hhcCCcHHHHHHHhc--CCcE-Ec
Confidence 47889999985311 122233333221 1568999999998653211 111112222222221 3344 47
Q ss_pred CCCCccccC
Q 044242 170 AGNHEIDFY 178 (247)
Q Consensus 170 ~GNHE~~~~ 178 (247)
+||||+...
T Consensus 76 ~GNHefd~G 84 (257)
T cd07408 76 PGNHEFDYG 84 (257)
T ss_pred cccccccCC
Confidence 899999754
No 94
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.60 E-value=0.041 Score=47.72 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=39.9
Q ss_pred EEEEeccCCCCCchHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCccc
Q 044242 101 FGLIGDLGQSYDSNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEID 176 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~~ 176 (247)
+.++||+|.. ...+.++.+.. ...+-++++||+++.+... -+-...+-.+.-..| ++.+.||||..
T Consensus 45 i~vvGDIHG~---~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s-------~evl~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 45 VNVCGDIHGQ---FYDLQALFKEGGDIPNANYIFIGDFVDRGYNS-------VETMEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred EEEEEeCCCC---HHHHHHHHHhcCCCCCceEEEeeeEcCCCCCH-------HHHHHHHHHhhhcCCCcEEEEecccchH
Confidence 7889999864 34455555532 2346799999999874311 122222222222334 67899999975
No 95
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.50 E-value=0.042 Score=47.97 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=40.1
Q ss_pred EEEEEeccCCCCCchHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCcc
Q 044242 100 SFGLIGDLGQSYDSNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEI 175 (247)
Q Consensus 100 ~f~~~gD~~~~~~~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~ 175 (247)
.++++||+|.. ...+.++.+.. ...+-+|++||+++.+... -+-...+..+.-..| ++.+.||||.
T Consensus 60 ~i~vvGDIHG~---~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s-------~evl~ll~~lki~~p~~v~llRGNHE~ 129 (320)
T PTZ00480 60 PLKICGDVHGQ---YFDLLRLFEYGGYPPESNYLFLGDYVDRGKQS-------LETICLLLAYKIKYPENFFLLRGNHEC 129 (320)
T ss_pred CeEEEeecccC---HHHHHHHHHhcCCCCcceEEEeceecCCCCCc-------HHHHHHHHHhcccCCCceEEEecccch
Confidence 48889999863 23444455432 3446788999999874311 111222222222333 6889999998
Q ss_pred c
Q 044242 176 D 176 (247)
Q Consensus 176 ~ 176 (247)
.
T Consensus 130 ~ 130 (320)
T PTZ00480 130 A 130 (320)
T ss_pred h
Confidence 5
No 96
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=95.49 E-value=0.077 Score=45.11 Aligned_cols=111 Identities=14% Similarity=0.030 Sum_probs=57.0
Q ss_pred eEEEEEeccCCC-CC--chHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-cCceEEcCCCCc
Q 044242 99 YSFGLIGDLGQS-YD--SNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-YQPWIWTAGNHE 174 (247)
Q Consensus 99 ~~f~~~gD~~~~-~~--~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~~P~~~~~GNHE 174 (247)
.|++++||.=.. +. -...++.+.++ .++||++..||.+-.+ ... . . ...+.|.. .+-++ +.|||+
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~-~~~D~vIaNgEn~~gG-~Gi-~----~---~~~~~L~~~GvDvi-T~GNH~ 69 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSK-YQADLVIANGENTTHG-KGL-T----L---KIYEFLKQSGVNYI-TMGNHT 69 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHh-CCCCEEEEcCcccCCC-CCC-C----H---HHHHHHHhcCCCEE-Eccchh
Confidence 378999999322 11 12344555555 4789999999999543 111 0 1 22233322 45666 559999
Q ss_pred cccCCCCCCcccCcccceeecCCCCCCCCCCCcEEEEEeCcEEEEEEcc
Q 044242 175 IDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWYSIKRASAYIIVLSS 223 (247)
Q Consensus 175 ~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds 223 (247)
++..................+.|.. ..+..|..++.++.++-+++-
T Consensus 70 ~Dkge~~~~i~~~~~~lrpanyp~~---~pG~g~~i~~~nG~kiaVinl 115 (266)
T TIGR00282 70 WFQKLILDVVINQKDLVRPLNFDTS---FAGKGSLVFEFNGAKIAVTNL 115 (266)
T ss_pred ccCcHHHHHHhccccccccCCCCCC---CCCCCcEEEEECCEEEEEEEC
Confidence 9754210000000111111123321 223456777888877666664
No 97
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.21 E-value=0.042 Score=56.16 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=41.5
Q ss_pred CCCeEEEEEeccCCCCCchH----HHHHHHhCCCCCCeE-EEeccccccCCCCCCCCcchhhHHHHHHHhhhcCce-EEc
Q 044242 96 DVPYSFGLIGDLGQSYDSNV----TLTHYERNPRKGQTL-LFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPW-IWT 169 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~~~----~~~~~~~~~~~~dfv-l~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~-~~~ 169 (247)
...+++++++|+|..-.... .++++.+. +++.+ +.+||+....... ....+. ..++.+ ..+.+ +.+
T Consensus 658 ~~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~--~~~~l~ld~GD~~~gs~~~--~~~~g~---~~~~~l-n~lg~d~~~ 729 (1163)
T PRK09419 658 NWELTILHTNDFHGHLDGAAKRVTKIKEVKEE--NPNTILVDAGDVYQGSLYS--NLLKGL---PVLKMM-KEMGYDAST 729 (1163)
T ss_pred ceEEEEEEEeecccCCCCHHHHHHHHHHHHhh--CCCeEEEecCCCCCCcchh--hhcCCh---HHHHHH-hCcCCCEEE
Confidence 35699999999995432222 23444443 56666 5599998643211 111122 222222 22333 559
Q ss_pred CCCCccccC
Q 044242 170 AGNHEIDFY 178 (247)
Q Consensus 170 ~GNHE~~~~ 178 (247)
+||||+..+
T Consensus 730 ~GNHEfd~g 738 (1163)
T PRK09419 730 FGNHEFDWG 738 (1163)
T ss_pred ecccccccC
Confidence 999999754
No 98
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=95.19 E-value=0.34 Score=40.95 Aligned_cols=112 Identities=10% Similarity=0.069 Sum_probs=61.8
Q ss_pred CCCeEEEeccccccCCCCCC---------------CCcchhhHHHHHHHhhhcCceEEcCCCCccccCCCCCCcccCccc
Q 044242 126 KGQTLLFVGDLSYADIYPCH---------------DNNRWDTWGRFVERSAAYQPWIWTAGNHEIDFYPEIGETVPFKPY 190 (247)
Q Consensus 126 ~~dfvl~~GD~~y~~~~~~~---------------~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~~~~~~~~~~~~~~y 190 (247)
++.-+|.+||.+...+.... .....+++-..+..+.+.+|+...|||||-... ... ++++.
T Consensus 42 ~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~-~lP-Qqplh-- 117 (257)
T cd07387 42 SIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANH-SLP-QQPLH-- 117 (257)
T ss_pred ceEEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCcccc-cCC-CCCCC--
Confidence 34569999999986432110 012233444556777889999999999998642 111 11110
Q ss_pred ceeecCCC--CCCCCCCCcEEEEEeCcEEEEEEcccc-----CCCCCChhHHHHHhhhh
Q 044242 191 SHRYHVPY--RASGSTAPFWYSIKRASAYIIVLSSYS-----AYGKDVLLPTVINKNFK 242 (247)
Q Consensus 191 ~~~f~~p~--~~~~~~~~~~Ysf~~G~v~fi~lds~~-----~~~~~~~Q~~WL~~dL~ 242 (247)
...|.... ..-....+ =|.|+.++++|++..... .|...+.=++.|++.|+
T Consensus 118 ~~lfp~s~~~~~~~~vtN-P~~~~i~g~~vLgtsGqni~Di~ky~~~~~~l~~me~~L~ 175 (257)
T cd07387 118 RCLFPKSSNYSTLNLVTN-PYEFSIDGVRVLGTSGQNVDDILKYSSLESRLDILERTLK 175 (257)
T ss_pred HHHhhcccccCCcEEeCC-CeEEEECCEEEEEECCCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 01111000 00000111 256999999999998742 23344455677777765
No 99
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.12 E-value=0.13 Score=43.49 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=55.1
Q ss_pred EEEEEeccCC-CCC--chHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-cCceEEcCCCCcc
Q 044242 100 SFGLIGDLGQ-SYD--SNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-YQPWIWTAGNHEI 175 (247)
Q Consensus 100 ~f~~~gD~~~-~~~--~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~~P~~~~~GNHE~ 175 (247)
|++++||+=. .+. -...++++.++ .++||++..||.+-... ... . ...+.+.. .+-++ +.||||+
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~-~~~D~vi~NgEn~~gg~-gl~-----~---~~~~~L~~~G~D~i-TlGNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKE-YKIDFVIANGENAAGGK-GIT-----P---KIAKELLSAGVDVI-TMGNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHH-CCCCEEEECCccccCCC-CCC-----H---HHHHHHHhcCCCEE-Eeccccc
Confidence 5789999932 221 12344555554 47899999999987531 110 1 22222222 34444 6699999
Q ss_pred ccCCCCCCcccC-ccc---ceeecCCCCCCCCCCCcEEEEEeCcEEEEEEcc
Q 044242 176 DFYPEIGETVPF-KPY---SHRYHVPYRASGSTAPFWYSIKRASAYIIVLSS 223 (247)
Q Consensus 176 ~~~~~~~~~~~~-~~y---~~~f~~p~~~~~~~~~~~Ysf~~G~v~fi~lds 223 (247)
... .. ..+ ... ...-++|.. ..+.-|.-++.+++++-+|+-
T Consensus 70 D~g-el---~~~l~~~~~~l~~aN~~~~---~pg~~~~i~~~~G~kIaVigl 114 (255)
T cd07382 70 DKK-EI---LDFIDEEPRLLRPANYPPG---TPGRGYGVVEVNGKKIAVINL 114 (255)
T ss_pred Ccc-hH---HHHHhcCcCceEeeecCCC---CCCCCeEEEEECCEEEEEEEE
Confidence 754 11 000 000 001122221 123457888888877666553
No 100
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.06 E-value=0.061 Score=46.43 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=38.4
Q ss_pred EEEEeccCCCCCchHHHHHHHhCC--CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhh--hcCceEEcCCCCccc
Q 044242 101 FGLIGDLGQSYDSNVTLTHYERNP--RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSA--AYQPWIWTAGNHEID 176 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~~~~~~~~~--~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~--~~~P~~~~~GNHE~~ 176 (247)
+.++||+|.. ...+.++.+.. +..+-++++||+++.+... -+-...+-.+. ....++.+.||||..
T Consensus 54 ~~ViGDIHG~---~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s-------~evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 54 VRVCGDTHGQ---YYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHS-------VETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred ceeeccCCCC---HHHHHHHHHHcCCCCcccEEEeeeEecCCCCH-------HHHHHHHHHHhhccCCeEEEEecccchH
Confidence 6789999864 34455555532 2345688999999874311 11111111111 122478899999974
No 101
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=95.05 E-value=0.16 Score=33.98 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=37.0
Q ss_pred ccCCCCCcEEEEEEeCCCC----CCCEEEEeccCCCCceEEEEEEEEeEecccccceEEEEEeCCCCCCCEEEEEeCc
Q 044242 5 QGDLVGKAVIVSWVTVDEP----GTNTVVYWSENSKQKEQAEGKIYTYKYYNYTSGYIHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 5 ~~~~~~~~~~V~W~T~~~~----~~~~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
+......++.|.|...... ..-.|.|.......... +. ....-...+.|.+|.|++.|.+||..
T Consensus 9 ~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~-------~~---~~~~~~~~~~i~~l~p~~~Y~~~v~a 76 (93)
T cd00063 9 VTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKE-------VE---VTPGSETSYTLTGLKPGTEYEFRVRA 76 (93)
T ss_pred EEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEE-------ee---ccCCcccEEEEccccCCCEEEEEEEE
Confidence 3333458999999887542 12344444432111111 11 01123457788999999999999954
No 102
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=94.99 E-value=0.049 Score=45.92 Aligned_cols=66 Identities=23% Similarity=0.212 Sum_probs=43.7
Q ss_pred CCeEEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCce---EEcCCCC
Q 044242 97 VPYSFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPW---IWTAGNH 173 (247)
Q Consensus 97 ~~~~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~---~~~~GNH 173 (247)
.-.||+.++|.|.-. ..+. +..+-|+++|+||...-+. .+ +..-......+.|+ +++.|||
T Consensus 60 ~~~r~VcisdtH~~~------~~i~-~~p~gDvlihagdfT~~g~------~~---ev~~fn~~~gslph~yKIVIaGNH 123 (305)
T KOG3947|consen 60 GYARFVCISDTHELT------FDIN-DIPDGDVLIHAGDFTNLGL------PE---EVIKFNEWLGSLPHEYKIVIAGNH 123 (305)
T ss_pred CceEEEEecCccccc------Cccc-cCCCCceEEeccCCccccC------HH---HHHhhhHHhccCcceeeEEEeecc
Confidence 468999999998631 1122 4467799999999997532 11 11222234556775 6899999
Q ss_pred ccccC
Q 044242 174 EIDFY 178 (247)
Q Consensus 174 E~~~~ 178 (247)
|...+
T Consensus 124 ELtFd 128 (305)
T KOG3947|consen 124 ELTFD 128 (305)
T ss_pred ceeec
Confidence 99754
No 103
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.97 E-value=0.04 Score=42.72 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=40.4
Q ss_pred EEEeccCCCCC-chHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHH-hhhcCceEEcCCCCc
Q 044242 102 GLIGDLGQSYD-SNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVER-SAAYQPWIWTAGNHE 174 (247)
Q Consensus 102 ~~~gD~~~~~~-~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~-~~~~~P~~~~~GNHE 174 (247)
+++||.+..-. -.+.++.+.+...+.|++|++||+.-... +. ++|...+.. ....+|.+++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~----~~---~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDE----DD---EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCcc----ch---hhHHHHhcCCccCCCCEEEECCCCC
Confidence 36788865321 11233343434367899999999986543 11 344444433 234789999999998
No 104
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=94.96 E-value=0.073 Score=51.19 Aligned_cols=77 Identities=23% Similarity=0.339 Sum_probs=49.4
Q ss_pred ccCCCCCcEEEEEEeCCCCCC----CEEEEeccCCCCceEEEEEEEEeEecccccceEEEEEeCCCCCCCEEEEEeCc--
Q 044242 5 QGDLVGKAVIVSWVTVDEPGT----NTVVYWSENSKQKEQAEGKIYTYKYYNYTSGYIHHCTIRHLEFNTKYYYVVGI-- 78 (247)
Q Consensus 5 ~~~~~~~~~~V~W~T~~~~~~----~~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~v~l~gL~p~t~Y~Yrv~~-- 78 (247)
...-..++++++|.-++.+.- -.|+|-.+... ..+|.. ...-..+|+|+||+|+|.|.+||..
T Consensus 451 ~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~--------e~~~~~---~~t~~~~~ti~gL~p~t~YvfqVRarT 519 (996)
T KOG0196|consen 451 QVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDED--------ERSYST---LKTKTTTATITGLKPGTVYVFQVRART 519 (996)
T ss_pred EeeeccCceEEecCCCCCCCCcceeEEEEEeecccc--------ccceeE---EecccceEEeeccCCCcEEEEEEEEec
Confidence 334456889999988876543 34555443210 011111 1122347899999999999999964
Q ss_pred ----CCcceeEEEeCCCC
Q 044242 79 ----GHTERQFWFVTPPE 92 (247)
Q Consensus 79 ----~~~s~~~~F~T~p~ 92 (247)
|..|....|.|.+.
T Consensus 520 ~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 520 AAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred ccCCCCCCCceeeeecCc
Confidence 25688999999875
No 105
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=94.94 E-value=0.044 Score=46.75 Aligned_cols=50 Identities=20% Similarity=0.068 Sum_probs=25.0
Q ss_pred CCCeEEE-eccccccCCCCCCC----CcchhhHHHHHHHhhhcCceEEcCCCCccccC
Q 044242 126 KGQTLLF-VGDLSYADIYPCHD----NNRWDTWGRFVERSAAYQPWIWTAGNHEIDFY 178 (247)
Q Consensus 126 ~~dfvl~-~GD~~y~~~~~~~~----~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~~~ 178 (247)
+++.++. +||+.......... ........+.+..+ ... +.++||||+...
T Consensus 43 ~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln~~--g~d-~~~lGNHe~d~g 97 (277)
T cd07410 43 NPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMNAL--GYD-AGTLGNHEFNYG 97 (277)
T ss_pred CCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHHhc--CCC-EEeecccCcccC
Confidence 5666554 99998753211000 00112223333333 233 457899998753
No 106
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=94.54 E-value=0.062 Score=45.54 Aligned_cols=47 Identities=15% Similarity=-0.037 Sum_probs=25.8
Q ss_pred CCCeE-EEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccccC
Q 044242 126 KGQTL-LFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEIDFY 178 (247)
Q Consensus 126 ~~dfv-l~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~~~ 178 (247)
.++.+ +.+||+....... .+... ..+-.++..+++.++.||||+...
T Consensus 50 ~~~~l~l~~GD~~~gs~~~-----~~~~g-~~~~~~l~~~g~da~~GNHefd~g 97 (264)
T cd07411 50 NPNTLLLDGGDTWQGSGEA-----LYTRG-QAMVDALNALGVDAMVGHWEFTYG 97 (264)
T ss_pred CCCeEEEeCCCccCCChHH-----hhcCC-hhHHHHHHhhCCeEEecccccccC
Confidence 57766 6799999654311 11111 122223334665555599998754
No 107
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=94.37 E-value=0.1 Score=44.85 Aligned_cols=74 Identities=16% Similarity=0.062 Sum_probs=37.8
Q ss_pred eEEEEEeccCCCCC-----------chHHHH----HHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhc
Q 044242 99 YSFGLIGDLGQSYD-----------SNVTLT----HYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAY 163 (247)
Q Consensus 99 ~~f~~~gD~~~~~~-----------~~~~~~----~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~ 163 (247)
++++.++|+|..-. ....+. ++.+. ....++|.+||+.......+ .-.......+.+ ..
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~-~~~~l~ld~GD~~~gs~~~s-~~~~g~~~~~~~----n~ 74 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQ-NPNSLFVSAGDLIGASPFES-ALLQDEPTIEAL----NA 74 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhc-CCCeEEEeCCcccccccchh-hcccCCcHHHHH----Hh
Confidence 47888888874311 122233 33333 23358999999986432111 001111122222 22
Q ss_pred Cce-EEcCCCCccccC
Q 044242 164 QPW-IWTAGNHEIDFY 178 (247)
Q Consensus 164 ~P~-~~~~GNHE~~~~ 178 (247)
+.+ +.++||||+...
T Consensus 75 ~g~Da~t~GNHefd~G 90 (288)
T cd07412 75 MGVDASAVGNHEFDEG 90 (288)
T ss_pred hCCeeeeecccccccC
Confidence 332 468899999754
No 108
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=94.29 E-value=0.18 Score=39.02 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=30.2
Q ss_pred HHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccc
Q 044242 119 HYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEID 176 (247)
Q Consensus 119 ~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~ 176 (247)
.+.+....=|.+.|+||++-... .-..+...++.|-..+ ..++||||-.
T Consensus 38 N~nntv~p~D~lwhLGDl~~~~n-------~~~~a~~IlerLnGrk--hlv~GNhDk~ 86 (186)
T COG4186 38 NWNNTVGPDDVLWHLGDLSSGAN-------RERAAGLILERLNGRK--HLVPGNHDKC 86 (186)
T ss_pred hHHhcCCccceEEEecccccccc-------hhhHHHHHHHHcCCcE--EEeeCCCCCC
Confidence 33343344589999999986532 1133444455543333 6799999984
No 109
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=93.98 E-value=0.63 Score=38.80 Aligned_cols=111 Identities=20% Similarity=0.165 Sum_probs=61.3
Q ss_pred eEEEEEeccCCC-CC--chHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCcc
Q 044242 99 YSFGLIGDLGQS-YD--SNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEI 175 (247)
Q Consensus 99 ~~f~~~gD~~~~-~~--~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~ 175 (247)
.|++++||+=.. ++ -..-|..+..+ -++||+|..|-.+-.+- .-.|+-|...++ ..+-++ +.|||=.
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~k-yk~dfvI~N~ENaa~G~-----Git~k~y~~l~~---~G~dvi-T~GNH~w 70 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSK-YKIDFVIVNGENAAGGF-----GITEKIYKELLE---AGADVI-TLGNHTW 70 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHh-hcCcEEEEcCccccCCc-----CCCHHHHHHHHH---hCCCEE-ecccccc
Confidence 489999999332 21 11234455554 48999999999986532 123444443332 245554 8999987
Q ss_pred ccCCCCCCcccCcccceeecCCCCCC-CCCCCcEEEEEeCcEEEEEEcc
Q 044242 176 DFYPEIGETVPFKPYSHRYHVPYRAS-GSTAPFWYSIKRASAYIIVLSS 223 (247)
Q Consensus 176 ~~~~~~~~~~~~~~y~~~f~~p~~~~-~~~~~~~Ysf~~G~v~fi~lds 223 (247)
... +. ..|..=..++--|.|-+ +..+.-|+-|+..+..+-++|-
T Consensus 71 d~~-ei---~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl 115 (266)
T COG1692 71 DQK-EI---LDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINL 115 (266)
T ss_pred cch-HH---HHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEe
Confidence 532 11 01111111222344422 2345667788887777666664
No 110
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=93.90 E-value=0.23 Score=42.61 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=42.7
Q ss_pred CCeEEEEEeccCCCCC----------c----hHHHHHHHhC--CCCCC-eEEEeccccccCCCCCCCCcchhhHHHHHHH
Q 044242 97 VPYSFGLIGDLGQSYD----------S----NVTLTHYERN--PRKGQ-TLLFVGDLSYADIYPCHDNNRWDTWGRFVER 159 (247)
Q Consensus 97 ~~~~f~~~gD~~~~~~----------~----~~~~~~~~~~--~~~~d-fvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~ 159 (247)
.+++++..+|+|..-. . .+.++++.+. ...++ ++|.+||..............+ +.+-.
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g----~~~~~ 79 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPG----SYSNP 79 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCC----hHHHH
Confidence 4689999999986311 0 1222333321 12343 7789999997543211000122 23344
Q ss_pred hhhcCce-EEcCCCCcccc
Q 044242 160 SAAYQPW-IWTAGNHEIDF 177 (247)
Q Consensus 160 ~~~~~P~-~~~~GNHE~~~ 177 (247)
++..+++ ..++||||+..
T Consensus 80 ~mN~mgyDa~tlGNHEFd~ 98 (282)
T cd07407 80 IFRMMPYDLLTIGNHELYN 98 (282)
T ss_pred HHHhcCCcEEeecccccCc
Confidence 4455665 46899999964
No 111
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=93.69 E-value=0.2 Score=45.52 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=47.7
Q ss_pred CCCeEEEEEeccCCCCCchHH----HHHHHhCC-------CCCCeEEEeccccccCCCCC-CC--------CcchhhHHH
Q 044242 96 DVPYSFGLIGDLGQSYDSNVT----LTHYERNP-------RKGQTLLFVGDLSYADIYPC-HD--------NNRWDTWGR 155 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~~~~----~~~~~~~~-------~~~dfvl~~GD~~y~~~~~~-~~--------~~~w~~~~~ 155 (247)
...+++++++|.|.+. ... +..+++-+ .+...++.+||+++.-+... .. ..+++++-+
T Consensus 223 ~e~v~v~~isDih~GS--k~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~ 300 (481)
T COG1311 223 DERVYVALISDIHRGS--KEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAE 300 (481)
T ss_pred CcceEEEEEeeeeccc--HHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHH
Confidence 3578999999999853 222 22233222 23468999999998544221 10 123333333
Q ss_pred HHHHhhhcCceEEcCCCCcccc
Q 044242 156 FVERSAAYQPWIWTAGNHEIDF 177 (247)
Q Consensus 156 ~~~~~~~~~P~~~~~GNHE~~~ 177 (247)
.+..+-.++-++..|||||...
T Consensus 301 ~L~~vp~~I~v~i~PGnhDa~r 322 (481)
T COG1311 301 FLDQVPEHIKVFIMPGNHDAVR 322 (481)
T ss_pred HHhhCCCCceEEEecCCCCccc
Confidence 4444445666899999999853
No 112
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=93.19 E-value=0.25 Score=46.10 Aligned_cols=78 Identities=19% Similarity=0.149 Sum_probs=45.7
Q ss_pred CCCCeEEEEEeccCCCCC------------ch----HHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHH
Q 044242 95 PDVPYSFGLIGDLGQSYD------------SN----VTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVE 158 (247)
Q Consensus 95 ~~~~~~f~~~gD~~~~~~------------~~----~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~ 158 (247)
....++|+...|+|..-. .. ..++++.++ .+..++|.+||+......... ...+..-.+.
T Consensus 23 ~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~-~~~~llld~GD~~~G~~l~~~-~~~g~~~~~~-- 98 (517)
T COG0737 23 ETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAE-NKNVLLLDAGDLIQGSPLSDY-LTKGEPTVDL-- 98 (517)
T ss_pred CceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhh-cCCeEEEeCCcccCCcccccc-ccCCChHHHH--
Confidence 356899999999987532 11 123344444 345789999999986443211 1222222222
Q ss_pred HhhhcCce-EEcCCCCccccC
Q 044242 159 RSAAYQPW-IWTAGNHEIDFY 178 (247)
Q Consensus 159 ~~~~~~P~-~~~~GNHE~~~~ 178 (247)
+..+++ ..++||||+...
T Consensus 99 --mN~m~yDa~tiGNHEFd~g 117 (517)
T COG0737 99 --LNALGYDAMTLGNHEFDYG 117 (517)
T ss_pred --HhhcCCcEEeecccccccC
Confidence 233343 469999999764
No 113
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=92.88 E-value=0.53 Score=30.28 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=34.5
Q ss_pred CCcEEEEEEeCCCCC--CCEEEEeccCCCCceEEEEEEEEeEecccccceEEEEEeCCCCCCCEEEEEeCc
Q 044242 10 GKAVIVSWVTVDEPG--TNTVVYWSENSKQKEQAEGKIYTYKYYNYTSGYIHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 10 ~~~~~V~W~T~~~~~--~~~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
++++.|+|....... ...++|........ +....... ....+.+.|.+|+|++.|.++|..
T Consensus 14 ~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~i~~L~~~~~Y~v~v~a 76 (83)
T smart00060 14 STSVTLSWEPPPDDGITGYIVGYRVEYREEG----SSWKEVNV----TPSSTSYTLTGLKPGTEYEFRVRA 76 (83)
T ss_pred CCEEEEEECCCCCCCCCccEEEEEEEEecCC----CccEEEEe----cCCccEEEEeCcCCCCEEEEEEEE
Confidence 348999998554321 24566654432111 00000100 111468889999999999999854
No 114
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=91.55 E-value=0.29 Score=46.12 Aligned_cols=77 Identities=16% Similarity=0.057 Sum_probs=40.9
Q ss_pred CCCeEEEEEeccCCCCC-------chH----HHHHHHhC---CCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhh
Q 044242 96 DVPYSFGLIGDLGQSYD-------SNV----TLTHYERN---PRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSA 161 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~-------~~~----~~~~~~~~---~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~ 161 (247)
...++|+.+.|+|..-. ... .++++.+. ....-++|.+||+....... .-.... .+-.++
T Consensus 32 ~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s--~~~~g~----~~i~~m 105 (551)
T PRK09558 32 TYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPES--DLQDAE----PDFRGM 105 (551)
T ss_pred ceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhh--hhcCCc----hhHHHH
Confidence 45799999999987421 111 23333322 12346899999987642110 001111 112222
Q ss_pred hcCce-EEcCCCCccccC
Q 044242 162 AYQPW-IWTAGNHEIDFY 178 (247)
Q Consensus 162 ~~~P~-~~~~GNHE~~~~ 178 (247)
..+.+ ..++||||+..+
T Consensus 106 N~~g~Da~tlGNHEFD~G 123 (551)
T PRK09558 106 NLIGYDAMAVGNHEFDNP 123 (551)
T ss_pred hcCCCCEEcccccccCcC
Confidence 33332 457899999865
No 115
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=91.33 E-value=0.6 Score=45.87 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=45.2
Q ss_pred CCCCCCCCCeEEEEEeccCCCCC-------------ch----HHHHHHHhCCCCCCeEEEeccccccCCCCCCCC-----
Q 044242 90 PPEVGPDVPYSFGLIGDLGQSYD-------------SN----VTLTHYERNPRKGQTLLFVGDLSYADIYPCHDN----- 147 (247)
Q Consensus 90 ~p~~~~~~~~~f~~~gD~~~~~~-------------~~----~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~----- 147 (247)
.|..+....++++...|+|..-. .. ..++++.++ ..--++|.+||+....-......
T Consensus 107 ~~~~~~~~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae-~~NtLllD~GD~iQGSpl~~~~a~~~~~ 185 (814)
T PRK11907 107 KPVEGQTVDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKE-NPNVVLVDNGDTIQGTPLGTYKAIVDPV 185 (814)
T ss_pred CCccCCceEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHh-CCCEEEEecCCCCCCCcccchhhhcccc
Confidence 34444445799999999987410 11 123444433 23358999999997532210000
Q ss_pred cchhhHHHHHHHhhhcCce-EEcCCCCccccC
Q 044242 148 NRWDTWGRFVERSAAYQPW-IWTAGNHEIDFY 178 (247)
Q Consensus 148 ~~w~~~~~~~~~~~~~~P~-~~~~GNHE~~~~ 178 (247)
...+. ..+-.++..+.| ..++||||+.++
T Consensus 186 ~~g~~--~P~i~amN~LGyDA~tLGNHEFDyG 215 (814)
T PRK11907 186 EEGEQ--HPMYAALEALGFDAGTLGNHEFNYG 215 (814)
T ss_pred ccCcc--hHHHHHHhccCCCEEEechhhcccC
Confidence 00000 112222333333 458999999865
No 116
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=91.29 E-value=0.48 Score=40.56 Aligned_cols=48 Identities=21% Similarity=0.120 Sum_probs=25.1
Q ss_pred CCC-eEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCccccC
Q 044242 126 KGQ-TLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEIDFY 178 (247)
Q Consensus 126 ~~d-fvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~~~ 178 (247)
.++ +++.+||+....... .........+.+..+ ...+ .++||||+...
T Consensus 48 ~~~~l~ld~GD~~~gs~~~--~~~~g~~~~~~ln~~--g~D~-~~lGNHefd~G 96 (281)
T cd07409 48 NPNVLFLNAGDAFQGTLWY--TLYKGNADAEFMNLL--GYDA-MTLGNHEFDDG 96 (281)
T ss_pred CCCEEEEeCCCCCCCcchh--hhcCChHHHHHHHhc--CCCE-EEeccccccCC
Confidence 344 677799998753321 111122222222222 3444 47799999764
No 117
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=91.21 E-value=0.37 Score=48.42 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=23.6
Q ss_pred eCCCCCCCEEEEEeCc------CCcceeEEEeCCC
Q 044242 63 IRHLEFNTKYYYVVGI------GHTERQFWFVTPP 91 (247)
Q Consensus 63 l~gL~p~t~Y~Yrv~~------~~~s~~~~F~T~p 91 (247)
+.+|+|+|.|..||.. +..|++..|.|+-
T Consensus 678 ~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~ 712 (1381)
T KOG4221|consen 678 FNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPE 712 (1381)
T ss_pred hhcCCCCceEEEEEEEeccCCCCCcccceeccCcc
Confidence 5789999999999954 2468899999963
No 118
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=90.97 E-value=0.52 Score=41.10 Aligned_cols=79 Identities=15% Similarity=-0.012 Sum_probs=39.0
Q ss_pred eEEEEEeccCCCCC---ch----HHHHHHHhCC---CCCCeEEEeccccccCCCCCCCC---cchhhHHHHHHHhhhcCc
Q 044242 99 YSFGLIGDLGQSYD---SN----VTLTHYERNP---RKGQTLLFVGDLSYADIYPCHDN---NRWDTWGRFVERSAAYQP 165 (247)
Q Consensus 99 ~~f~~~gD~~~~~~---~~----~~~~~~~~~~---~~~dfvl~~GD~~y~~~~~~~~~---~~w~~~~~~~~~~~~~~P 165 (247)
++++.+.|+|..-. .. ..++++.+.. .+..++|.+||+.......+... ..+.. .+.+-.++..+-
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~-G~~~i~~mN~~g 79 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDP-GRADILILNALG 79 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccC-ChHHHHHHhccC
Confidence 47888999986421 11 1234443321 23458999999986432110000 00000 112222333333
Q ss_pred e-EEcCCCCccccC
Q 044242 166 W-IWTAGNHEIDFY 178 (247)
Q Consensus 166 ~-~~~~GNHE~~~~ 178 (247)
+ ..++||||+.+.
T Consensus 80 ~Da~tlGNHEFD~G 93 (313)
T cd08162 80 VQAIALGNHEFDLG 93 (313)
T ss_pred CcEEeccccccccC
Confidence 2 348999999765
No 119
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=90.63 E-value=0.61 Score=41.00 Aligned_cols=110 Identities=20% Similarity=0.216 Sum_probs=58.3
Q ss_pred eEEEEEeccCCCCC-chHHHHHHHhCC-CCCCeEEEeccccccCCCCC----CCC---cchhhHHHHH-HHhhhcCceEE
Q 044242 99 YSFGLIGDLGQSYD-SNVTLTHYERNP-RKGQTLLFVGDLSYADIYPC----HDN---NRWDTWGRFV-ERSAAYQPWIW 168 (247)
Q Consensus 99 ~~f~~~gD~~~~~~-~~~~~~~~~~~~-~~~dfvl~~GD~~y~~~~~~----~~~---~~w~~~~~~~-~~~~~~~P~~~ 168 (247)
.|++|-|-+|..-+ -..++..+-+.. .++|++|++||+---..... .-. .+...|.+.. ..+.+-+|-++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 36888887765321 123334333331 37899999999975322110 001 1112233322 23345677889
Q ss_pred cCCCCccccCCCCCCcccCcccceeecCCCCCCCCCCCcEE-----EEEeCcEEEEEEcc
Q 044242 169 TAGNHEIDFYPEIGETVPFKPYSHRYHVPYRASGSTAPFWY-----SIKRASAYIIVLSS 223 (247)
Q Consensus 169 ~~GNHE~~~~~~~~~~~~~~~y~~~f~~p~~~~~~~~~~~Y-----sf~~G~v~fi~lds 223 (247)
+-||||..+- .. .+|.-|= -..+.|| ..++|+||+=.|+.
T Consensus 81 IGGNHEAsny------------L~--eLpyGGw-VApNIyYlG~agVv~~~gvRIggiSG 125 (456)
T KOG2863|consen 81 IGGNHEASNY------------LQ--ELPYGGW-VAPNIYYLGYAGVVNFGGVRIGGISG 125 (456)
T ss_pred ecCchHHHHH------------HH--hcccCce-eccceEEeeecceEEECCEEEeeccc
Confidence 9999998532 10 1121100 0123344 57899999999987
No 120
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=90.15 E-value=0.64 Score=39.91 Aligned_cols=75 Identities=17% Similarity=-0.000 Sum_probs=36.9
Q ss_pred eEEEEEeccCCCCC-------c----hHHHHHHHhCC---CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcC
Q 044242 99 YSFGLIGDLGQSYD-------S----NVTLTHYERNP---RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQ 164 (247)
Q Consensus 99 ~~f~~~gD~~~~~~-------~----~~~~~~~~~~~---~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~ 164 (247)
++++..+|+|..-. . ...++++.++. ...-++|.+||+....... .-.....-.+.|..+ ..
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~--~~~~g~~~~~~~n~~--g~ 76 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPES--DLQDAEPDFRGMNLV--GY 76 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhH--HhcCcchHHHHHHhh--CC
Confidence 46888888876411 1 12233443321 2345899999988532210 001111111222221 22
Q ss_pred ceEEcCCCCccccC
Q 044242 165 PWIWTAGNHEIDFY 178 (247)
Q Consensus 165 P~~~~~GNHE~~~~ 178 (247)
- ..++||||+...
T Consensus 77 D-a~~~GNHEfD~G 89 (285)
T cd07405 77 D-AMAVGNHEFDNP 89 (285)
T ss_pred c-EEeecccccccC
Confidence 3 347799999864
No 121
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=90.05 E-value=0.87 Score=42.90 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=28.6
Q ss_pred HHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCce-EEcCCCCccccC
Q 044242 117 LTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPW-IWTAGNHEIDFY 178 (247)
Q Consensus 117 ~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~-~~~~GNHE~~~~ 178 (247)
++++.+. .+.-++|.+||+....... .-..+.. .++ ++..+.+ ..++||||+...
T Consensus 41 i~~~r~~-~~n~l~ldaGD~~~gs~~~--~~~~g~~---~i~-~~N~~g~Da~~lGNHEFd~G 96 (550)
T TIGR01530 41 INKLRAE-SKNALVLHAGDAIIGTLYF--TLFGGRA---DAA-LMNAAGFDFFTLGNHEFDAG 96 (550)
T ss_pred HHHHHhh-CCCeEEEECCCCCCCccch--hhcCCHH---HHH-HHhccCCCEEEeccccccCC
Confidence 3444443 2346899999998653211 0011111 122 2233332 458999999764
No 122
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=89.16 E-value=1.3 Score=37.24 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=51.3
Q ss_pred EEEeccCCC-CC--chHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHh-hhcCceEEcCCCCcccc
Q 044242 102 GLIGDLGQS-YD--SNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERS-AAYQPWIWTAGNHEIDF 177 (247)
Q Consensus 102 ~~~gD~~~~-~~--~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~-~~~~P~~~~~GNHE~~~ 177 (247)
+++||+=.. +. -...|+.|.++ .++||||..|..+-.+. .. -. +..+.| ...+-++ +.|||=...
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~-~~~DfVIaNgENaa~G~-Gi----t~----~~~~~L~~~GvDvi-T~GNH~wdk 69 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEE-YGIDFVIANGENAAGGF-GI----TP----KIAEELFKAGVDVI-TMGNHIWDK 69 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG---G-SEEEEE-TTTTTTS-S------H----HHHHHHHHHT-SEE-E--TTTTSS
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhh-cCCCEEEECCcccCCCC-CC----CH----HHHHHHHhcCCCEE-ecCcccccC
Confidence 467887221 11 12345566666 58999999999996532 11 11 122222 2356665 899998864
Q ss_pred CCCCCCcccCcccceeecCCCCCC-CCCCCcEEEEEeCcEEEEEEcc
Q 044242 178 YPEIGETVPFKPYSHRYHVPYRAS-GSTAPFWYSIKRASAYIIVLSS 223 (247)
Q Consensus 178 ~~~~~~~~~~~~y~~~f~~p~~~~-~~~~~~~Ysf~~G~v~fi~lds 223 (247)
.. ...+-.-..+.--|.|-+ +..+.-|..|+.++.++-++|-
T Consensus 70 ke----i~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl 112 (253)
T PF13277_consen 70 KE----IFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINL 112 (253)
T ss_dssp TT----HHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEE
T ss_pred cH----HHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEEC
Confidence 31 000000001111233322 2346779999999988888886
No 123
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=88.09 E-value=0.92 Score=43.44 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=39.4
Q ss_pred CeEEEEEeccCCCCC-------------c----hHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcch---hhHHHHH
Q 044242 98 PYSFGLIGDLGQSYD-------------S----NVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRW---DTWGRFV 157 (247)
Q Consensus 98 ~~~f~~~gD~~~~~~-------------~----~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w---~~~~~~~ 157 (247)
.++++...|+|..-. . ...++++.++ ...-++|.+||+.............. ... ..+
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e-~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~-~p~ 79 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAE-VKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQM-HPV 79 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhh-CCCeEEEECCCcCCCccchhhhhhccccCCCc-ChH
Confidence 478888888876421 0 1123334333 23358999999997532210000000 000 111
Q ss_pred HHhhhcCce-EEcCCCCccccC
Q 044242 158 ERSAAYQPW-IWTAGNHEIDFY 178 (247)
Q Consensus 158 ~~~~~~~P~-~~~~GNHE~~~~ 178 (247)
-.++..+.| ..++||||+...
T Consensus 80 ~~~mN~lgyDa~tlGNHEFd~G 101 (626)
T TIGR01390 80 YKAMNLLKYDVGNLGNHEFNYG 101 (626)
T ss_pred HHHHhhcCccEEeccccccccc
Confidence 122233333 468999999764
No 124
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=86.35 E-value=2.7 Score=41.25 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=27.1
Q ss_pred CCCeEEEEEeccCCCCC-------------ch----HHHHHHHhCCCCCCeEEEecccccc
Q 044242 96 DVPYSFGLIGDLGQSYD-------------SN----VTLTHYERNPRKGQTLLFVGDLSYA 139 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~-------------~~----~~~~~~~~~~~~~dfvl~~GD~~y~ 139 (247)
...++|+...|+|..-. .. ..++++.++ ..--++|..||+...
T Consensus 37 ~~~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e-~~ntlllD~GD~iqG 96 (780)
T PRK09418 37 TVNLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREE-AKNSVLFDDGDALQG 96 (780)
T ss_pred ceEEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHh-CCCeEEEECCCCCCC
Confidence 35799999999987420 11 123334333 233589999999875
No 125
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=86.01 E-value=1.5 Score=36.65 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=36.3
Q ss_pred EEEEeccCCCCCchHHHHHHHhCCC--CCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCccc
Q 044242 101 FGLIGDLGQSYDSNVTLTHYERNPR--KGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEID 176 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~~~~~~~~~~--~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~~ 176 (247)
+.+.||+|..- .-+-.|.+--. .-.=.|++||+|+.+-. .-+.+. .+-.+....| +..+.||||.+
T Consensus 45 vtvcGDIHGQf---~Dllelf~igG~~~~t~YLFLGDyVDRG~~------SvEt~l-LLl~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 45 VTVCGDIHGQF---YDLLELFRIGGDVPETNYLFLGDYVDRGYY------SVETFL-LLLALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred cEEeecccchH---HHHHHHHHhCCCCCCCceEeecchhccccc------hHHHHH-HHHHHhhcCcceeEEeeccchhh
Confidence 45689998631 12222333211 11347889999987531 223333 2223333455 66789999986
No 126
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=85.78 E-value=1.3 Score=35.22 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=37.1
Q ss_pred EEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCccccC
Q 044242 101 FGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEIDFY 178 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~~~~ 178 (247)
+-+||+.-... ....-++.......=|.|+..||+.-+.... + . .+=++.+ ..+| -+.+.||||+.+.
T Consensus 19 M~vFGe~W~gh-~ekI~k~W~~~v~~eDiVllpGDiSWaM~l~--e-a--~~Dl~~i----~~LPG~K~m~rGNHDYWw~ 88 (230)
T COG1768 19 MEVFGEPWSGH-HEKIKKHWRSKVSPEDIVLLPGDISWAMRLE--E-A--EEDLRFI----GDLPGTKYMIRGNHDYWWS 88 (230)
T ss_pred eeecCCcccCc-hHHHHHHHHhcCChhhEEEecccchhheech--h-h--hhhhhhh----hcCCCcEEEEecCCccccc
Confidence 45577764432 1222233333333458999999999875432 1 1 1112333 3344 2459999999753
No 127
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=85.71 E-value=0.57 Score=39.92 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=62.3
Q ss_pred CCeEEEeccccccCCCCCCCCcchhhHHH-------HHHHhhhcCceEEcCCCCccccC-CCC------CCcccCc-ccc
Q 044242 127 GQTLLFVGDLSYADIYPCHDNNRWDTWGR-------FVERSAAYQPWIWTAGNHEIDFY-PEI------GETVPFK-PYS 191 (247)
Q Consensus 127 ~dfvl~~GD~~y~~~~~~~~~~~w~~~~~-------~~~~~~~~~P~~~~~GNHE~~~~-~~~------~~~~~~~-~y~ 191 (247)
|--++..||++++.+....+.....++.. .+.++.-++|+++-.||||..-+ +.. .|.+.+. .|.
T Consensus 127 plGlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~H 206 (392)
T COG5555 127 PLGLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYH 206 (392)
T ss_pred ceeEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhc
Confidence 34477889999987755433222222221 12234447999999999999643 110 0111110 110
Q ss_pred --eeecCCCCC--CCCCCCcEEEEEeCcEEEEEEcccc-CCCC-CChhHHHHHhhhhh
Q 044242 192 --HRYHVPYRA--SGSTAPFWYSIKRASAYIIVLSSYS-AYGK-DVLLPTVINKNFKL 243 (247)
Q Consensus 192 --~~f~~p~~~--~~~~~~~~Ysf~~G~v~fi~lds~~-~~~~-~~~Q~~WL~~dL~~ 243 (247)
..|.-|... +-..-.--||+|+|.+|.+-+-... +-++ ...-+-||+.+|..
T Consensus 207 r~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~ 264 (392)
T COG5555 207 RSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIY 264 (392)
T ss_pred CcCcccCCCCCcccccccchheeccccceeEEEEeeeccccCCCccccCcceecccee
Confidence 011111111 1123345689999999999887742 1112 23446788888864
No 128
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=85.37 E-value=1.9 Score=41.59 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=27.5
Q ss_pred CCCeEEEEEeccCCCCC-------------c----hHHHHHHHhCCCCCCeEEEeccccccC
Q 044242 96 DVPYSFGLIGDLGQSYD-------------S----NVTLTHYERNPRKGQTLLFVGDLSYAD 140 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~-------------~----~~~~~~~~~~~~~~dfvl~~GD~~y~~ 140 (247)
...++++...|+|..-. . ...++++.++ ..--++|.+||+....
T Consensus 23 ~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e-~~n~llvD~GD~~qGs 83 (649)
T PRK09420 23 TVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAE-AKNSVLVDNGDLIQGS 83 (649)
T ss_pred CceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHh-CCCEEEEECCCcCCCc
Confidence 45799999999986410 0 1123344333 2335899999998753
No 129
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=84.24 E-value=0.89 Score=36.85 Aligned_cols=78 Identities=12% Similarity=0.050 Sum_probs=41.4
Q ss_pred EEEEeccCCCCC--chHHHHHHHhCC---CCCCeEEEeccccccCCCCC--CC---Ccch-hhHH----HHHHHhhhcCc
Q 044242 101 FGLIGDLGQSYD--SNVTLTHYERNP---RKGQTLLFVGDLSYADIYPC--HD---NNRW-DTWG----RFVERSAAYQP 165 (247)
Q Consensus 101 f~~~gD~~~~~~--~~~~~~~~~~~~---~~~dfvl~~GD~~y~~~~~~--~~---~~~w-~~~~----~~~~~~~~~~P 165 (247)
+++++|...... ..+.++++.+.. .+|+.+|++|+++....... .. .... ..+. ..+..+...++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 577888877632 234556666532 47899999999998633110 00 0011 1111 12334455788
Q ss_pred eEEcCCCCccccC
Q 044242 166 WIWTAGNHEIDFY 178 (247)
Q Consensus 166 ~~~~~GNHE~~~~ 178 (247)
++.+||+||....
T Consensus 81 vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 81 VVLVPGPNDPTSS 93 (209)
T ss_dssp EEEE--TTCTT-S
T ss_pred EEEeCCCcccccc
Confidence 9999999998654
No 130
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=81.02 E-value=5.9 Score=32.67 Aligned_cols=66 Identities=24% Similarity=0.359 Sum_probs=36.6
Q ss_pred EEEEeccCCCCCchHHHHHHHhCC-CCCCe-EEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCccc
Q 044242 101 FGLIGDLGQSYDSNVTLTHYERNP-RKGQT-LLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEID 176 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~~~~~~~~~-~~~df-vl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~~ 176 (247)
+.+.||+|..- --+-++.+.- .-||- .|+.||+++.+-+ ..+.| ..+--+.+..| +-...||||.+
T Consensus 48 VTvCGDIHGQF---yDL~eLFrtgG~vP~tnYiFmGDfVDRGyy------SLEtf-T~l~~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 48 VTVCGDIHGQF---YDLLELFRTGGQVPDTNYIFMGDFVDRGYY------SLETF-TLLLLLKARYPAKITLLRGNHESR 117 (306)
T ss_pred eeEeeccchhH---HHHHHHHHhcCCCCCcceEEeccccccccc------cHHHH-HHHHHHhhcCCceeEEeeccchhh
Confidence 44689998631 1223333331 12333 6789999987542 22332 33334445556 44678999986
No 131
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=80.65 E-value=3.9 Score=42.18 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=25.9
Q ss_pred CCeEEEEEeccCCCCC-------------chHH----HHHHHhCCCCCCeEEEeccccccC
Q 044242 97 VPYSFGLIGDLGQSYD-------------SNVT----LTHYERNPRKGQTLLFVGDLSYAD 140 (247)
Q Consensus 97 ~~~~f~~~gD~~~~~~-------------~~~~----~~~~~~~~~~~dfvl~~GD~~y~~ 140 (247)
..++++..+|+|..-. .... ++++.++ ..--++|.+||+....
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~-~~n~llld~GD~~qGs 99 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKE-NPNTLLVDNGDLIQGN 99 (1163)
T ss_pred eEEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHh-CCCeEEEeCCCccCCC
Confidence 4699999999986410 1122 3333333 2224667799999854
No 132
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=79.71 E-value=5.3 Score=39.14 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=64.8
Q ss_pred eeeccCCCCCcEEEEEEeCCCCC-----CCEEEEeccCCCC-----ceEEEEEE-EEeEe----ccccc-ceEEEEEeCC
Q 044242 2 HITQGDLVGKAVIVSWVTVDEPG-----TNTVVYWSENSKQ-----KEQAEGKI-YTYKY----YNYTS-GYIHHCTIRH 65 (247)
Q Consensus 2 hl~~~~~~~~~~~V~W~T~~~~~-----~~~V~y~~~~~~~-----~~~~~~~~-~~~~~----~~~~~-~~~h~v~l~g 65 (247)
+++......+++.++|..-..++ .-.|.|...|... ...+-|.. ....+ .+... +......|.|
T Consensus 493 ~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~ 572 (1025)
T KOG4258|consen 493 QFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDG 572 (1025)
T ss_pred eeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhc
Confidence 45555556789999999987652 2456666666321 11222211 11111 01111 2333778999
Q ss_pred CCCCCEEEEEeCcC----------CcceeEEEeCCCCCCCCCCeEEEEEeccC
Q 044242 66 LEFNTKYYYVVGIG----------HTERQFWFVTPPEVGPDVPYSFGLIGDLG 108 (247)
Q Consensus 66 L~p~t~Y~Yrv~~~----------~~s~~~~F~T~p~~~~~~~~~f~~~gD~~ 108 (247)
|+|.|.|-|=|..- +.|++..++|.|.. ++.|+..+..++..
T Consensus 573 LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~-PspPl~~ls~snsS 624 (1025)
T KOG4258|consen 573 LKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDI-PSPPLDVLSKSNSS 624 (1025)
T ss_pred CCccceeEEEEeeeehhhhccccccccceEEEEecCCC-CCCcchhhhccCcc
Confidence 99999999988642 46899999998754 45677777666654
No 133
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=78.51 E-value=4.3 Score=35.70 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=37.3
Q ss_pred EEEEeccCCCCCchHHHHHHHhCCC--CC-CeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCcc
Q 044242 101 FGLIGDLGQSYDSNVTLTHYERNPR--KG-QTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEI 175 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~~~~~~~~~~--~~-dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~ 175 (247)
+.++||+|.... ..+ ++..... ++ .=.+++||+++.+... .+.. -.+-.+....| ++...||||.
T Consensus 61 V~i~GDiHGq~~--DLl-rlf~~~g~~pp~~~ylFLGDYVDRG~~s------lE~i-~LL~a~Ki~yp~~~~lLRGNHE~ 130 (331)
T KOG0374|consen 61 VKIVGDIHGQFG--DLL-RLFDLLGSFPPDQNYVFLGDYVDRGKQS------LETI-CLLFALKIKYPENVFLLRGNHEC 130 (331)
T ss_pred EEEEccCcCCHH--HHH-HHHHhcCCCCCcccEEEecccccCCccc------eEEe-ehhhhhhhhCCceEEEecccccc
Confidence 666999987532 223 3333222 24 4489999999985421 1111 11111122344 7889999999
Q ss_pred cc
Q 044242 176 DF 177 (247)
Q Consensus 176 ~~ 177 (247)
..
T Consensus 131 ~~ 132 (331)
T KOG0374|consen 131 AS 132 (331)
T ss_pred cc
Confidence 63
No 134
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=78.14 E-value=8.4 Score=39.31 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=43.4
Q ss_pred CCCCcEEEEEEeCCCCCCCEEEE----eccCCCCceEEEEEEEEeEecccccceEEEEEeCCCCCCCEEEEEeCcC----
Q 044242 8 LVGKAVIVSWVTVDEPGTNTVVY----WSENSKQKEQAEGKIYTYKYYNYTSGYIHHCTIRHLEFNTKYYYVVGIG---- 79 (247)
Q Consensus 8 ~~~~~~~V~W~T~~~~~~~~V~y----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~v~l~gL~p~t~Y~Yrv~~~---- 79 (247)
..+.++.|.|..+.-...+...| ..+.. ++-..+ ..--++.+|.||+|.|.|.|||...
T Consensus 532 ts~~ti~v~WepP~~~n~~I~~yk~~ys~~~~-------~~~~~~------~~n~~e~ti~gL~k~TeY~~~vvA~N~~G 598 (1381)
T KOG4221|consen 532 TSPTTILVTWEPPPFGNGPITGYKLFYSEDDT-------GKELRV------ENNATEYTINGLEKYTEYSIRVVAYNSAG 598 (1381)
T ss_pred cCcceEEEEecCCCCCCCCceEEEEEEEcCCC-------CceEEE------ecCccEEEeecCCCccceEEEEEEecCCC
Confidence 34678999999987444444334 33311 110111 2223467788999999999999642
Q ss_pred --CcceeEEEeCC
Q 044242 80 --HTERQFWFVTP 90 (247)
Q Consensus 80 --~~s~~~~F~T~ 90 (247)
.-|....|+|+
T Consensus 599 ~g~sS~~i~V~Tl 611 (1381)
T KOG4221|consen 599 SGVSSADITVRTL 611 (1381)
T ss_pred CCCCCCceEEEec
Confidence 34667788886
No 135
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=75.47 E-value=5.1 Score=33.84 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=33.9
Q ss_pred EEEEeccCCCCCchHHHHHHHhCC-CCCCe-EEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCccc
Q 044242 101 FGLIGDLGQSYDSNVTLTHYERNP-RKGQT-LLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEID 176 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~~~~~~~~~-~~~df-vl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~~ 176 (247)
..+.||.|... .-+-.+.+-- ..+|- .|+.||.++.+-.. .+--..+-.+.-..| +-.++||||.+
T Consensus 62 vtvcGDvHGqf---~dl~ELfkiGG~~pdtnylfmGDyvdrGy~S-------vetVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 62 VTVCGDVHGQF---HDLIELFKIGGLAPDTNYLFMGDYVDRGYYS-------VETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred eEEecCcchhH---HHHHHHHHccCCCCCcceeeeeeecccccch-------HHHHHHHHHhhccccceeEEecCchHHH
Confidence 55689998632 1222233211 23443 68899999874321 221222222221233 44689999985
No 136
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=74.74 E-value=19 Score=31.06 Aligned_cols=81 Identities=10% Similarity=-0.051 Sum_probs=48.0
Q ss_pred CCCeEEEEEeccCCCCC-chHHHHHHHhCC-------CCCCeEEEeccccccCCCCC-CCCcchhhHHHHHHH-------
Q 044242 96 DVPYSFGLIGDLGQSYD-SNVTLTHYERNP-------RKGQTLLFVGDLSYADIYPC-HDNNRWDTWGRFVER------- 159 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~-~~~~~~~~~~~~-------~~~dfvl~~GD~~y~~~~~~-~~~~~w~~~~~~~~~------- 159 (247)
+...+|+++||.+.+.. ..+.|+++.+.. ..|-.+|+.|+++...-... +......+.|+.+..
T Consensus 25 ~~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp 104 (291)
T PTZ00235 25 DKRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFK 104 (291)
T ss_pred CCceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhCh
Confidence 45689999999998753 223344444432 12788999999997631110 111223334443332
Q ss_pred -hhhcCceEEcCCCCccc
Q 044242 160 -SAAYQPWIWTAGNHEID 176 (247)
Q Consensus 160 -~~~~~P~~~~~GNHE~~ 176 (247)
+..+.-++.+||-.|-.
T Consensus 105 ~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 105 LILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHhcCeEEEECCCCCCC
Confidence 34456688999999973
No 137
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=69.89 E-value=10 Score=38.17 Aligned_cols=61 Identities=28% Similarity=0.363 Sum_probs=38.8
Q ss_pred CCCcEEEEEEeCCC----CCCCEEEEeccCCCCceEEEEEEEEeEecccccceEEEEEeCCCCCCCEEEEEeCc
Q 044242 9 VGKAVIVSWVTVDE----PGTNTVVYWSENSKQKEQAEGKIYTYKYYNYTSGYIHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 9 ~~~~~~V~W~T~~~----~~~~~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
..++|.|+|....- .....|+|....+.. +...... ...-.-.++|+||+|+|.|+..|..
T Consensus 832 s~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~-----~~~~~~~----i~~~~~~~~ltgL~~~T~Y~~~vrA 896 (1051)
T KOG3513|consen 832 SSSEVNLSWKPPLWDNGKLTGYEVKYWKINEKE-----GSLSRVQ----IAGNRTSWRLTGLEPNTKYRFYVRA 896 (1051)
T ss_pred cCceEEEEecCcCccCCccceeEEEEEEcCCCc-----cccccee----ecCCcceEeeeCCCCCceEEEEEEE
Confidence 36799999955432 235678998876532 1111111 1233447789999999999998854
No 138
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.67 E-value=4.9 Score=36.60 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=39.9
Q ss_pred CeEEEEEeccCCCCCchHHHHHH---HhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCC
Q 044242 98 PYSFGLIGDLGQSYDSNVTLTHY---ERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNH 173 (247)
Q Consensus 98 ~~~f~~~gD~~~~~~~~~~~~~~---~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNH 173 (247)
+.|++++||.... ..+.++++ .+.....|++|++|++.-.+. ....|..|.+-...+ -+|.+..-+|-
T Consensus 5 ~~kILv~Gd~~Gr--~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~----~~~e~~~ykng~~~v--PiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGR--FDELIKRIQKVNKKSGPFDLLICVGNFFGHDT----QNAEVEKYKNGTKKV--PIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCcccc--HHHHHHHHHHHhhcCCCceEEEEecccCCCcc----chhHHHHHhcCCccC--ceeEEEecCCC
Confidence 3699999999542 33444444 444456899999999987532 123444444322221 46666555544
No 139
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=66.17 E-value=8.6 Score=28.12 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCCCCEEEEEeCc
Q 044242 56 GYIHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 56 ~~~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
+-++++.|.++.+|+.|.|||..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 46888999999999999999974
No 140
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=65.20 E-value=9.6 Score=27.13 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.8
Q ss_pred cceEEEEEeCCCCCCCEEEEEeCc
Q 044242 55 SGYIHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 55 ~~~~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
.+-+.++.+.++.+|+.|.|||..
T Consensus 43 ~~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 43 YGGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred cCCEEEEEECCCCCCCEEEEEECC
Confidence 456789999999999999999965
No 141
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=62.38 E-value=8.7 Score=27.16 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=14.9
Q ss_pred EEEeCCCCCCCEEEEEeCc
Q 044242 60 HCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 60 ~v~l~gL~p~t~Y~Yrv~~ 78 (247)
.+.|.+|+|++.|+-+|..
T Consensus 68 ~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 68 SVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEES--TTSEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEE
Confidence 5679999999999999975
No 142
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=61.42 E-value=12 Score=25.61 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=19.5
Q ss_pred cceEEEEEeCCCCCCCEEEEEeCc
Q 044242 55 SGYIHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 55 ~~~~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
..-++++.+.++ +|..|.|+|..
T Consensus 38 ~~G~W~~~v~~~-~g~~Y~y~v~~ 60 (85)
T cd02853 38 GDGWFEAEVPGA-AGTRYRYRLDD 60 (85)
T ss_pred CCcEEEEEeCCC-CCCeEEEEECC
Confidence 345778999999 99999999974
No 143
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=61.41 E-value=11 Score=26.50 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=20.8
Q ss_pred cceEEEEEeCCCCCCCEEEEEeCc
Q 044242 55 SGYIHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 55 ~~~~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
.+-++++.+.++.+|+.|.|||..
T Consensus 45 ~~gvw~~~v~~~~~g~~Y~y~i~~ 68 (100)
T cd02860 45 ENGVWSVTLDGDLEGYYYLYEVKV 68 (100)
T ss_pred CCCEEEEEeCCccCCcEEEEEEEE
Confidence 456788999999999999999964
No 144
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=60.50 E-value=10 Score=29.50 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=20.9
Q ss_pred EEEeCCCCCCCEEE--EEeCcCC---cceeEEEeCCCC
Q 044242 60 HCTIRHLEFNTKYY--YVVGIGH---TERQFWFVTPPE 92 (247)
Q Consensus 60 ~v~l~gL~p~t~Y~--Yrv~~~~---~s~~~~F~T~p~ 92 (247)
.-.+++|.|||+|+ |+|..+. -|....-.|.|.
T Consensus 103 aYqVtNL~pGTkY~isY~VtkgtstESS~~i~msT~n~ 140 (184)
T PF07353_consen 103 AYQVTNLQPGTKYYISYLVTKGTSTESSNEIPMSTLNR 140 (184)
T ss_pred eEEeeccCCCcEEEEEEEEecCccceecceeccccccc
Confidence 33579999999997 6676552 123344555554
No 145
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=53.72 E-value=18 Score=32.11 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=35.5
Q ss_pred EEEEeccCCCCCchHHHHHHHhCCCCC--CeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCccc
Q 044242 101 FGLIGDLGQSYDSNVTLTHYERNPRKG--QTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEID 176 (247)
Q Consensus 101 f~~~gD~~~~~~~~~~~~~~~~~~~~~--dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~~ 176 (247)
+-+.||+|... --+-++.+--.+| -=.|++||.|+.+.... +.. -.+-.+.-..| ++...||||.+
T Consensus 90 iTVCGDIHGQf---~DLmKLFEVGG~PA~t~YLFLGDYVDRGyFSi--ECv-----lYLwsLKi~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 90 ITVCGDIHGQF---FDLMKLFEVGGSPANTRYLFLGDYVDRGYFSI--ECV-----LYLWSLKINYPKTLFLLRGNHECR 159 (517)
T ss_pred eeEecccchHH---HHHHHHHHccCCcccceeEeeccccccceeee--ehH-----HHHHHHhcCCCCeEEEecCCcchh
Confidence 56799998631 1233344432233 34688999998754221 000 01112221223 67799999986
Q ss_pred c
Q 044242 177 F 177 (247)
Q Consensus 177 ~ 177 (247)
.
T Consensus 160 H 160 (517)
T KOG0375|consen 160 H 160 (517)
T ss_pred h
Confidence 3
No 146
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=44.73 E-value=66 Score=27.32 Aligned_cols=78 Identities=15% Similarity=0.082 Sum_probs=51.6
Q ss_pred CCCeEEEEEeccCCCCCchHHHHHHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCcc
Q 044242 96 DVPYSFGLIGDLGQSYDSNVTLTHYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEI 175 (247)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~~~~~~~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~ 175 (247)
++..+|++.+|.+... ....++.+.+. +|+.+|..|=.+|-.++.-. ....+.=.+.++.+....+--.++.-|=.
T Consensus 174 dg~~~i~faSDvqGp~-~~~~l~~i~e~--~P~v~ii~GPpty~lg~r~~-~~~~E~~irNl~~ii~~~~~~lViDHHll 249 (304)
T COG2248 174 DGKSSIVFASDVQGPI-NDEALEFILEK--RPDVLIIGGPPTYLLGYRVG-PKSLEKGIRNLERIIEETNATLVIDHHLL 249 (304)
T ss_pred cCCeEEEEcccccCCC-ccHHHHHHHhc--CCCEEEecCCchhHhhhhcC-hHHHHHHHHHHHHHHHhCcceEEEeehhh
Confidence 3578999999998644 34677878886 89999999999987664210 11112223445666666665567777766
Q ss_pred cc
Q 044242 176 DF 177 (247)
Q Consensus 176 ~~ 177 (247)
+.
T Consensus 250 RD 251 (304)
T COG2248 250 RD 251 (304)
T ss_pred cC
Confidence 54
No 147
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=43.61 E-value=52 Score=27.46 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=27.3
Q ss_pred eEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCccc
Q 044242 129 TLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEID 176 (247)
Q Consensus 129 fvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~~ 176 (247)
-++++||.....+........-.+|++.++.+.+ +| .++.+| |++.
T Consensus 120 ~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~-l~~~~~i~pG-H~~~ 167 (248)
T TIGR03413 120 PALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAA-LPDDTLVYCA-HEYT 167 (248)
T ss_pred CEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHc-CCCCeEEECC-CCch
Confidence 3799999987654211111233566666776553 44 356788 9874
No 148
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=42.71 E-value=24 Score=30.62 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.4
Q ss_pred EEEeCCCCCCCEEEEEeC
Q 044242 60 HCTIRHLEFNTKYYYVVG 77 (247)
Q Consensus 60 ~v~l~gL~p~t~Y~Yrv~ 77 (247)
..+|.+|+|+|+||+-|-
T Consensus 16 ~~t~~~L~p~t~YyfdVF 33 (300)
T PF10179_consen 16 NQTLSGLKPDTTYYFDVF 33 (300)
T ss_pred eEEeccCCCCCeEEEEEE
Confidence 456899999999999884
No 149
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=42.68 E-value=31 Score=23.16 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=19.3
Q ss_pred cceEEEEEeC-CCCCCC-EEEEEeCcC
Q 044242 55 SGYIHHCTIR-HLEFNT-KYYYVVGIG 79 (247)
Q Consensus 55 ~~~~h~v~l~-gL~p~t-~Y~Yrv~~~ 79 (247)
..=+++++|. +|++|+ .|.|||...
T Consensus 47 ~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 47 DDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 3446678888 889885 999999765
No 150
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=37.72 E-value=46 Score=31.99 Aligned_cols=36 Identities=11% Similarity=-0.063 Sum_probs=27.4
Q ss_pred eEEEEEeCCCCCCCEEEEEeCcCC-----cceeEEEeCCCC
Q 044242 57 YIHHCTIRHLEFNTKYYYVVGIGH-----TERQFWFVTPPE 92 (247)
Q Consensus 57 ~~h~v~l~gL~p~t~Y~Yrv~~~~-----~s~~~~F~T~p~ 92 (247)
=++.+.|.++.||++|.|++.... .++.+.+.+.+.
T Consensus 73 G~we~~vp~~~~G~~Yky~l~~~~g~~~~~~DP~a~~~~~~ 113 (628)
T COG0296 73 GIWELFVPGAPPGTRYKYELIDPSGQLRLKADPYARRQEVG 113 (628)
T ss_pred ceEEEeccCCCCCCeEEEEEeCCCCceeeccCchhhccCCC
Confidence 477999999999999999997652 355666665543
No 151
>KOG4720 consensus Ethanolamine kinase [Lipid transport and metabolism]
Probab=36.98 E-value=11 Score=32.89 Aligned_cols=40 Identities=3% Similarity=-0.094 Sum_probs=28.2
Q ss_pred CCcEEEEEeCc--EEEEEEccccCCC---CCChhHHHHHhhhhhcc
Q 044242 205 APFWYSIKRAS--AYIIVLSSYSAYG---KDVLLPTVINKNFKLHN 245 (247)
Q Consensus 205 ~~~~Ysf~~G~--v~fi~lds~~~~~---~~~~Q~~WL~~dL~~~~ 245 (247)
+..|-.||+|| ..|-..+ +.||. .-++|++||+.=|...+
T Consensus 278 ~yNY~afDIgNHFnE~aGv~-evDYSlyp~rE~Q~qwl~~YLq~~k 322 (391)
T KOG4720|consen 278 GYNYQAFDIGNHFNEYAGVE-EVDYSLYPTREEQLQWLRDYLQAYK 322 (391)
T ss_pred ccchhheehhhhHHhhcCCC-ccchhcCCCHHHHHHHHHHHHhhcc
Confidence 34677888887 4555555 45565 35899999999887654
No 152
>PF10333 Pga1: GPI-Mannosyltransferase II co-activator; InterPro: IPR019433 Pga1 is found only in yeasts and not in mammals. It localises in the ER as a glycosylated integral membrane protein. It binds to the GPI-mannosyltransferase II subunit of the GPI and it is responsible for the second mannose addition to GPI precursors. The GPI-anchoring complex is a glycolipid that functions as a membrane anchor for many cell-surface proteins [].
Probab=34.04 E-value=67 Score=25.66 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=20.8
Q ss_pred cceEEEEEeCCCCCCCEEEEEeCc
Q 044242 55 SGYIHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 55 ~~~~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
.+....++|.+|++|.+|+-|++.
T Consensus 62 ~~~t~~V~L~nl~~~e~y~vKiCW 85 (180)
T PF10333_consen 62 PGSTTYVELNNLQPGETYQVKICW 85 (180)
T ss_pred CCceEEEEeccCCCCCeEEEEEEE
Confidence 456778899999999999999974
No 153
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=31.72 E-value=40 Score=29.22 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.7
Q ss_pred EEeCCCCCCCEEEEEeCcC
Q 044242 61 CTIRHLEFNTKYYYVVGIG 79 (247)
Q Consensus 61 v~l~gL~p~t~Y~Yrv~~~ 79 (247)
.+|.||+||+.|-..|...
T Consensus 262 etI~~L~PG~~Yl~dV~~~ 280 (300)
T PF10179_consen 262 ETIKGLKPGTTYLFDVYVN 280 (300)
T ss_pred eecccCCCCcEEEEEEEEe
Confidence 3799999999998887653
No 154
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=31.39 E-value=31 Score=32.93 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=29.6
Q ss_pred HHHhCCCCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCcccc
Q 044242 119 HYERNPRKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHEIDF 177 (247)
Q Consensus 119 ~~~~~~~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE~~~ 177 (247)
.++++ --+|=+-.+||+-+.+..+ + ..|..|...--+=.-+||||+-+
T Consensus 178 ~lIqr-L~VDhLHIvGDIyDRGp~p-------d---~ImD~Lm~~hsvDIQWGNHDIlW 225 (640)
T PF06874_consen 178 ELIQR-LAVDHLHIVGDIYDRGPRP-------D---KIMDRLMNYHSVDIQWGNHDILW 225 (640)
T ss_pred HHHHH-HhhhheeecccccCCCCCh-------h---HHHHHHhcCCCccccccchHHHH
Confidence 34444 2567788899998875422 2 33444544333446899999854
No 155
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=30.91 E-value=89 Score=22.30 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=13.4
Q ss_pred eEEEEEeccCCCCCchHHHHHHHhC
Q 044242 99 YSFGLIGDLGQSYDSNVTLTHYERN 123 (247)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~~~~~~~~ 123 (247)
.+|+.+||.|..+ .+...++++.
T Consensus 65 ~kfiLIGDsgq~D--peiY~~ia~~ 87 (100)
T PF09949_consen 65 RKFILIGDSGQHD--PEIYAEIARR 87 (100)
T ss_pred CcEEEEeeCCCcC--HHHHHHHHHH
Confidence 5677777776543 3455555554
No 156
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=30.78 E-value=1e+02 Score=25.74 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=26.9
Q ss_pred EEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCc--eEEcCCCCccc
Q 044242 130 LLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQP--WIWTAGNHEID 176 (247)
Q Consensus 130 vl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P--~~~~~GNHE~~ 176 (247)
++++||.....+..........+|.+.++.+.+ +| .++++| ||+.
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~-l~~~t~i~pg-H~y~ 168 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKINA-LPDDTLICCA-HEYT 168 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHc-CCCCEEEECC-CCCh
Confidence 599999887654221112233566666766653 44 356677 9975
No 157
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=28.96 E-value=92 Score=23.45 Aligned_cols=43 Identities=28% Similarity=0.518 Sum_probs=23.2
Q ss_pred eEEEeccccccCCCCCCC------------CcchhhHHHHHHHhhhcCceEEcCC
Q 044242 129 TLLFVGDLSYADIYPCHD------------NNRWDTWGRFVERSAAYQPWIWTAG 171 (247)
Q Consensus 129 fvl~~GD~~y~~~~~~~~------------~~~w~~~~~~~~~~~~~~P~~~~~G 171 (247)
-++++||+.......... ...|..+.+.+..+...-|-+.++|
T Consensus 139 ~vlftGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~g 193 (194)
T PF00753_consen 139 KVLFTGDLLFSNEHPNPDPDLPLRGADVRYGSNWEESIEALRRLEALDPEVIIPG 193 (194)
T ss_dssp TEEEEETTSCTTTSSSSSTSHTTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEES
T ss_pred cEEEeeeEeccCCccccccccccccccccCcHHHHHHHHHHHHHHCCCCCEEEeC
Confidence 477778887764422111 1344555556666665555555553
No 158
>PF13205 Big_5: Bacterial Ig-like domain
Probab=28.69 E-value=95 Score=21.55 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.5
Q ss_pred CCCCCCCEEEEEeCcC
Q 044242 64 RHLEFNTKYYYVVGIG 79 (247)
Q Consensus 64 ~gL~p~t~Y~Yrv~~~ 79 (247)
..|.+|++|.-.|..+
T Consensus 70 ~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 70 QPLKPGTTYTVTIDSG 85 (107)
T ss_pred CcCCCCCEEEEEECCC
Confidence 4699999999999654
No 159
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=27.93 E-value=1e+02 Score=20.88 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.8
Q ss_pred cceEEEEEeCCCCCCCEEEEEeCc
Q 044242 55 SGYIHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 55 ~~~~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
.+-.++..=.+|++|..|.|+|..
T Consensus 25 ~G~~R~F~T~~L~~G~~y~Y~v~a 48 (75)
T TIGR03000 25 TGTVRTFTTPPLEAGKEYEYTVTA 48 (75)
T ss_pred CccEEEEECCCCCCCCEEEEEEEE
Confidence 455666677899999999999976
No 160
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=26.03 E-value=1e+02 Score=21.40 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=17.7
Q ss_pred EEEEEeCCCCCCCEEEEEeCc
Q 044242 58 IHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 58 ~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
++++.|.++.++..|.|++..
T Consensus 59 ~w~~~v~~~~~~~~Y~~~v~~ 79 (106)
T cd02855 59 VWELFIPGLGEGELYKYEILG 79 (106)
T ss_pred EEEEEECCCCCCCEEEEEEEC
Confidence 466889999999999999964
No 161
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=25.72 E-value=46 Score=27.87 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=12.1
Q ss_pred CceEEcCCCCccccC
Q 044242 164 QPWIWTAGNHEIDFY 178 (247)
Q Consensus 164 ~P~~~~~GNHE~~~~ 178 (247)
.-+.+..||||...+
T Consensus 128 knvvvlagnhein~n 142 (318)
T PF13258_consen 128 KNVVVLAGNHEINFN 142 (318)
T ss_pred cceEEEecCceeccC
Confidence 457889999999765
No 162
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=25.27 E-value=53 Score=31.15 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=29.5
Q ss_pred HHHHHhCCCCCC-eEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCce-EEcCCCCcccc
Q 044242 117 LTHYERNPRKGQ-TLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPW-IWTAGNHEIDF 177 (247)
Q Consensus 117 ~~~~~~~~~~~d-fvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~-~~~~GNHE~~~ 177 (247)
++++++. +++| +++-.||+-...+... ..|.+ ...-..+....|+ +.+.||||..-
T Consensus 78 ~k~~a~~-~~~dvl~~dtGD~hdGtg~sd---~~~~~-g~~t~~l~~~~~yD~l~lGNHEl~~ 135 (602)
T KOG4419|consen 78 MKELADR-KGVDVLLVDTGDLHDGTGLSD---ATDPP-GIYTNFLFKMMPYDILTLGNHELYQ 135 (602)
T ss_pred HHHHHhc-cCCCEEEEecccccCCceeee---ccCCc-hHHHHHHHhcCccchhhhcchhhhh
Confidence 3444444 4555 5688999877655431 11111 0011223344553 56899999964
No 163
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=23.94 E-value=76 Score=25.51 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.2
Q ss_pred CCCCcEEEEEeCcEEEEEEcccc
Q 044242 203 STAPFWYSIKRASAYIIVLSSYS 225 (247)
Q Consensus 203 ~~~~~~Ysf~~G~v~fi~lds~~ 225 (247)
+.+..||+-+.|-+|+|+-|+..
T Consensus 155 gk~~~yy~q~~GAiRYVvad~ge 177 (200)
T PF07305_consen 155 GKGSRYYSQTEGAIRYVVADNGE 177 (200)
T ss_pred CCCCcceeeccCceEEEEecCCC
Confidence 45789999999999999999954
No 164
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=23.92 E-value=2.1e+02 Score=29.33 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=38.9
Q ss_pred CCCcEEEEEEeCCCCCCCEEEEe----ccCCCCceEEEEEEEEeEecccccceEEEEEeCCCCCCCEEEEEeCc
Q 044242 9 VGKAVIVSWVTVDEPGTNTVVYW----SENSKQKEQAEGKIYTYKYYNYTSGYIHHCTIRHLEFNTKYYYVVGI 78 (247)
Q Consensus 9 ~~~~~~V~W~T~~~~~~~~V~y~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~v~l~gL~p~t~Y~Yrv~~ 78 (247)
..+++.|+|.-...-..+...|- +.....|..+. +. ... ..+- +.+++.+|.|-..|.+||..
T Consensus 627 ~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~-~v-p~~----~~~~-~sa~vv~L~Pwv~YeFRV~A 693 (1051)
T KOG3513|consen 627 SDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVT-TV-PGN----ITGD-ESATVVNLSPWVEYEFRVVA 693 (1051)
T ss_pred ccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEee-EC-CCc----ccCc-cceeEEccCCCcceEEEEEE
Confidence 46789999998865434554453 33222344433 21 111 1222 56889999999999999964
No 165
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=23.89 E-value=84 Score=23.34 Aligned_cols=30 Identities=7% Similarity=-0.053 Sum_probs=18.7
Q ss_pred EEEeCCCCCCCEEEEEeCcC-----CcceeEEEeC
Q 044242 60 HCTIRHLEFNTKYYYVVGIG-----HTERQFWFVT 89 (247)
Q Consensus 60 ~v~l~gL~p~t~Y~Yrv~~~-----~~s~~~~F~T 89 (247)
++.++||.|++.|.-+.... .|.....|++
T Consensus 6 ~I~v~GL~p~~~vtl~a~~~~~~g~~w~S~A~f~A 40 (126)
T PF04775_consen 6 DIRVSGLPPGQEVTLRARLTDDNGVQWQSYATFRA 40 (126)
T ss_dssp EEEEES--TT-EEEEEEEEE-TTS-EEEEEEEEE-
T ss_pred EEEEeCCCCCCEEEEEEEEEeCCCCEEEEEEEEEc
Confidence 57899999999999887542 3555556665
No 166
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.73 E-value=1.3e+02 Score=24.55 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=27.3
Q ss_pred CCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-cCceEEcCCCC
Q 044242 126 KGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-YQPWIWTAGNH 173 (247)
Q Consensus 126 ~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~~P~~~~~GNH 173 (247)
.++-++++=|+++.... +.-..|++.++..++ .+|.| .+||-
T Consensus 84 gA~gi~LvyDitne~Sf-----eni~~W~~~I~e~a~~~v~~~-LvGNK 126 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSF-----ENIRNWIKNIDEHASDDVVKI-LVGNK 126 (207)
T ss_pred hcCeeEEEEEccchHHH-----HHHHHHHHHHHhhCCCCCcEE-Eeecc
Confidence 56677777788776442 223447788877776 56665 78884
No 167
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=23.06 E-value=1e+02 Score=20.70 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=13.5
Q ss_pred EEEEEeCCCCCCCEEEEEeCcC
Q 044242 58 IHHCTIRHLEFNTKYYYVVGIG 79 (247)
Q Consensus 58 ~h~v~l~gL~p~t~Y~Yrv~~~ 79 (247)
.+++++. |.||+ |.||...+
T Consensus 37 ~w~~~~~-l~~G~-y~Ykf~vd 56 (82)
T cd02861 37 LWVVTVE-LRPGR-YEYKFVVD 56 (82)
T ss_pred cEEEEEe-CCCCc-EEEEEEEC
Confidence 4677774 99998 66665443
No 168
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.71 E-value=2e+02 Score=23.39 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=32.6
Q ss_pred HHHHHHHhCC-CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhh-cCceEEcCCCCcc
Q 044242 115 VTLTHYERNP-RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAA-YQPWIWTAGNHEI 175 (247)
Q Consensus 115 ~~~~~~~~~~-~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~-~~P~~~~~GNHE~ 175 (247)
+.++.+.+.. .+..-||++=|++..... ..-..|+.-+...+. .+|.+ .+||--.
T Consensus 69 ERFrtit~syYR~ahGii~vyDiT~~~SF-----~~v~~Wi~Ei~~~~~~~v~~l-LVGNK~D 125 (205)
T KOG0084|consen 69 ERFRTITSSYYRGAHGIIFVYDITKQESF-----NNVKRWIQEIDRYASENVPKL-LVGNKCD 125 (205)
T ss_pred HHHhhhhHhhccCCCeEEEEEEcccHHHh-----hhHHHHHHHhhhhccCCCCeE-EEeeccc
Confidence 3455555433 577888888888875332 233456666655544 45665 6788644
No 169
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=21.56 E-value=1.8e+02 Score=22.79 Aligned_cols=45 Identities=11% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCCCeEEEeccccccCCCCCCCCcchhhHHHHHHHhhhcCceEEcCCCCc
Q 044242 125 RKGQTLLFVGDLSYADIYPCHDNNRWDTWGRFVERSAAYQPWIWTAGNHE 174 (247)
Q Consensus 125 ~~~dfvl~~GD~~y~~~~~~~~~~~w~~~~~~~~~~~~~~P~~~~~GNHE 174 (247)
.+.|.+|++=|+...... +.....|.+.+......+|++ +.||+=
T Consensus 75 ~~ad~~ilvyDit~~~Sf----~~~~~~w~~~i~~~~~~~pii-lVgNK~ 119 (182)
T cd04172 75 PDSDAVLICFDISRPETL----DSVLKKWKGEIQEFCPNTKML-LVGCKS 119 (182)
T ss_pred CCCCEEEEEEECCCHHHH----HHHHHHHHHHHHHHCCCCCEE-EEeECh
Confidence 467888887787654321 111244555555544567765 688883
Done!