BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044243
(425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 234 bits (596), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 156/425 (36%), Positives = 224/425 (52%), Gaps = 34/425 (8%)
Query: 1 MKISVETISREMIKPSTPTPNHLRHYHFSYLDQTAPPLYVSLLYFYHLDDHKLVSNNNHL 60
M +E +S E+I PS+PTP L+ Y S+LDQ ++ + FY + L SN +
Sbjct: 1 MAPQMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFY---PNPLDSNLDPA 57
Query: 61 FINS-LKSSLSNVLTKYYPLAGRVK-NNYVDCNDEGVVFSEAKVSCLLSEIINELPSEFN 118
+ LK SLS VLT +YPLAGR+ N+ VDCND GV F EA+V LS+ I + E
Sbjct: 58 QTSQHLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNV-VELE 116
Query: 119 KLRPFDQEKDVVSING--------LPIAIQVNMFNCGSVAIAVMISHKIADASSLITFTK 170
KL DQ + G +P+A++++ F CG AI V +SHKIAD SL TF
Sbjct: 117 KL---DQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLN 173
Query: 171 NWAAAARGGSENVFPEF-AAARLFPPKDAGGSSGVSVDPRPKKIVLKKFLFEGPKITALR 229
W A RG +E V P F AAR FPP D S + D + +V+K+F+F+ KI ALR
Sbjct: 174 AWTATCRGETEIVLPNFDLAARHFPPVDNTPSPELVPD---ENVVMKRFVFDKEKIGALR 230
Query: 230 DKY-GLDNGIYPTRVEALSAFIWSRLAASTRIKISPERPYMLVHLVNLRKRMEPPLPDDS 288
+ +RV+ + A+IW + TR K + +++V VNLR RM PPLP +
Sbjct: 231 AQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYA 290
Query: 289 FGNIIGAAVTVLEENDDDD--RMVNKFRDAICKVDKDYLKVMKLEHSELTDLVITNGEIV 346
GNI ++ D D ++ R ++ K + D+ + EL + E+
Sbjct: 291 MGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDH-------NHELLKGMTCLYELE 343
Query: 347 DRGELGYCFFSSLCKFPVYEADFGLGKPMWVAWGRLPYKNIIHLIDTKSGDGIEAWVHLE 406
+ L F+S C+ Y+ DFG GKP+ P +N L+DT+SGDG+EAW+ +
Sbjct: 344 PQELLS---FTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMA 400
Query: 407 EEVMA 411
E+ MA
Sbjct: 401 EDEMA 405
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 119/443 (26%), Positives = 203/443 (45%), Gaps = 46/443 (10%)
Query: 1 MKISVETISREMIKPSTPTPNHLRHYHFSYLDQTAPPLYVSLLYFYHLDDHKLVSNNNHL 60
MKI V+ + M++P+ TP R+ S +D P + +YFY + ++N
Sbjct: 6 MKIEVKEST--MVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFY-----RPTGSSNFF 56
Query: 61 FINSLKSSLSNVLTKYYPLAGRVKNNY-----VDCNDEGVVFSEAKVSCLLSEIINELPS 115
LK +LS L +YP+AGR+K + ++CN EGV+F EA+ ++ + + P+
Sbjct: 57 DAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT 116
Query: 116 -EFNKLRPFDQEKDVVSINGLPIAIQVNMFNCGSVAIAVMISHKIADASSLITFTKNWAA 174
E +L P +S L + +QV F CG V++ V + H AD S + F +W+
Sbjct: 117 LELRRLIPAVDYSQGISSYAL-LVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSD 175
Query: 175 AARG---------------GSENVFPEFAAARLFPPKDAGGSSGVSVDPRPKKIVLKKFL 219
ARG + P+F PP S + + + F
Sbjct: 176 MARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFK 235
Query: 220 FEGPKITALRDKYGLD-NGIYPTRVEALSAFIWSRLAASTRIKISPERPYMLVHLVNLRK 278
+I+AL+ K D N I + E L+ +W R A R + ++ L + R
Sbjct: 236 LTREQISALKAKSKEDGNTISYSSYEMLAGHVW-RCACKAR-GLEVDQGTKLYIATDGRA 293
Query: 279 RMEPPLPDDSFGNIIGAAVTVLEENDDDDRMV----NKFRDAICKVDKDYLKVMKLEHSE 334
R+ P LP FGN+I A + D + + V +K DA+ ++D DYL+ L++ E
Sbjct: 294 RLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLR-SALDYLE 352
Query: 335 LT-DL--VITNGEIVDRGELGYCFFSSLCKFPVYEADFGLGKPMWVAWGRLPYKNIIHLI 391
L DL ++ LG +S + P+++ADFG G+P+++ G + Y+ + ++
Sbjct: 353 LQPDLKALVRGAHTFKXPNLG---ITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIL 409
Query: 392 DTKSGDG-IEAWVHLEEEVMAKF 413
+ + DG + + L+ E M F
Sbjct: 410 PSPTNDGSMSVAISLQGEHMKLF 432
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 119/443 (26%), Positives = 203/443 (45%), Gaps = 46/443 (10%)
Query: 1 MKISVETISREMIKPSTPTPNHLRHYHFSYLDQTAPPLYVSLLYFYHLDDHKLVSNNNHL 60
MKI V+ + M++P+ TP R+ S +D P + +YFY + ++N
Sbjct: 3 MKIEVKEST--MVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFY-----RPTGSSNFF 53
Query: 61 FINSLKSSLSNVLTKYYPLAGRVKNNY-----VDCNDEGVVFSEAKVSCLLSEIINELPS 115
LK +LS L +YP+AGR+K + ++CN EGV+F EA+ ++ + + P+
Sbjct: 54 DAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT 113
Query: 116 -EFNKLRPFDQEKDVVSINGLPIAIQVNMFNCGSVAIAVMISHKIADASSLITFTKNWAA 174
E +L P +S L + +QV F CG V++ V + H AD S + F +W+
Sbjct: 114 LELRRLIPAVDYSQGISSYAL-LVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSD 172
Query: 175 AARG---------------GSENVFPEFAAARLFPPKDAGGSSGVSVDPRPKKIVLKKFL 219
ARG + P+F PP S + + + F
Sbjct: 173 MARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFK 232
Query: 220 FEGPKITALRDKYGLD-NGIYPTRVEALSAFIWSRLAASTRIKISPERPYMLVHLVNLRK 278
+I+AL+ K D N I + E L+ +W R A R + ++ L + R
Sbjct: 233 LTREQISALKAKSKEDGNTISYSSYEMLAGHVW-RCACKAR-GLEVDQGTKLYIATDGRA 290
Query: 279 RMEPPLPDDSFGNIIGAAVTVLEENDDDDRMV----NKFRDAICKVDKDYLKVMKLEHSE 334
R+ P LP FGN+I A + D + + V +K DA+ ++D DYL+ L++ E
Sbjct: 291 RLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLR-SALDYLE 349
Query: 335 LT-DL--VITNGEIVDRGELGYCFFSSLCKFPVYEADFGLGKPMWVAWGRLPYKNIIHLI 391
L DL ++ LG +S + P+++ADFG G+P+++ G + Y+ + ++
Sbjct: 350 LQPDLKALVRGAHTFKCPNLG---ITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIL 406
Query: 392 DTKSGDG-IEAWVHLEEEVMAKF 413
+ + DG + + L+ E M F
Sbjct: 407 PSPTNDGSMSVAISLQGEHMKLF 429
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 118/443 (26%), Positives = 202/443 (45%), Gaps = 46/443 (10%)
Query: 1 MKISVETISREMIKPSTPTPNHLRHYHFSYLDQTAPPLYVSLLYFYHLDDHKLVSNNNHL 60
MKI V+ + M++P+ TP R+ S +D P + +YFY + ++N
Sbjct: 6 MKIEVKEST--MVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFY-----RPTGSSNFF 56
Query: 61 FINSLKSSLSNVLTKYYPLAGRVKNNY-----VDCNDEGVVFSEAKVSCLLSEIINELPS 115
LK +LS L +YP+AGR+K + ++CN EGV+F EA+ ++ + + P+
Sbjct: 57 DAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT 116
Query: 116 -EFNKLRPFDQEKDVVSINGLPIAIQVNMFNCGSVAIAVMISHKIADASSLITFTKNWAA 174
E +L P +S L + +QV F G V++ V + H AD S + F +W+
Sbjct: 117 LELRRLIPAVDYSQGISSYAL-LVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSD 175
Query: 175 AARG---------------GSENVFPEFAAARLFPPKDAGGSSGVSVDPRPKKIVLKKFL 219
ARG + P+F PP S + + + F
Sbjct: 176 MARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFK 235
Query: 220 FEGPKITALRDKYGLD-NGIYPTRVEALSAFIWSRLAASTRIKISPERPYMLVHLVNLRK 278
+I+AL+ K D N I + E L+ +W R A R + ++ L + R
Sbjct: 236 LTREQISALKAKSKEDGNTISYSSYEMLAGHVW-RCACKAR-GLEVDQGTKLYIATDGRA 293
Query: 279 RMEPPLPDDSFGNIIGAAVTVLEENDDDDRMV----NKFRDAICKVDKDYLKVMKLEHSE 334
R+ P LP FGN+I A + D + + V +K DA+ ++D DYL+ L++ E
Sbjct: 294 RLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLR-SALDYLE 352
Query: 335 LT-DL--VITNGEIVDRGELGYCFFSSLCKFPVYEADFGLGKPMWVAWGRLPYKNIIHLI 391
L DL ++ LG +S + P+++ADFG G+P+++ G + Y+ + ++
Sbjct: 353 LQPDLKALVRGAHTFKXPNLG---ITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIL 409
Query: 392 DTKSGDG-IEAWVHLEEEVMAKF 413
+ + DG + + L+ E M F
Sbjct: 410 PSPTNDGSMSVAISLQGEHMKLF 432
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 107/457 (23%), Positives = 181/457 (39%), Gaps = 69/457 (15%)
Query: 15 PSTPTPNHLRHYHFSYLDQTAPPLYVSLLYFYHLDDHKLVSNNNHLFINSLKSSLSNVLT 74
P T L+ F + +PP ++ L+FY L + S + ++K SLS L
Sbjct: 19 PDTLGDKSLQLTFFDFFWLRSPP--INNLFFYELPITR--SQFTETVVPNIKHSLSITLK 74
Query: 75 KYYPLAGRV----------KNNYVDCNDEGVVFSEAKVSCLLSEIINELPSEFNKLRPFD 124
+YP G++ + YV+ + V F+E + +NEL N R D
Sbjct: 75 HFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLD------LNELTG--NHPRNCD 126
Query: 125 QEKDVVSING----------LPI-AIQVNMFNCGSVAIAVMISHKIADASSLITFTKNWA 173
+ D+V I G +P+ ++QV +F +AI + H + DAS+ F K W
Sbjct: 127 KFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWT 186
Query: 174 AAARGGSEN-------VFPEFAAARLFPPKDAGGSSGVSVD-----------PRPKKIVL 215
+ AR G+ + P + +P D V+ P +
Sbjct: 187 SIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPSDKLR 246
Query: 216 KKFLFEGPKITALRDKY--GLDNGIYPTRVEALSAFIWSRLAASTRIKISPERPYMLVHL 273
F+ I L+D+ L Y + A+IWS +A S K+ +
Sbjct: 247 ATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQ-----LFGFP 301
Query: 274 VNLRKRMEPPLPDDSFGNIIGAAVTVLEENDDDDRMVNK--FRDAICKVDKDYLKVMK-L 330
++ R RM+PP+P FGN +G + + N ++ K F A + ++ K +
Sbjct: 302 IDRRARMKPPIPTAYFGNCVGGCAAIAKTN----LLIGKEGFITAAKLIGENLHKTLTDY 357
Query: 331 EHSELTDLVITNGEIVDRG-ELGYCFFSSLCKFPVYEADFGLGKPMWVAWGRLPYKNIIH 389
+ L D + + ++V G + S K Y+ DFG GKP + + + I
Sbjct: 358 KDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKPKKLETVSIDHNGAIS 417
Query: 390 LIDTK-SGDGIEAWVHLEEEVMAKFGN--DQELLAYV 423
+ K S + +E V + M F + D L AY+
Sbjct: 418 INSCKESNEDLEIGVCISATQMEDFVHIFDDGLKAYL 454
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/405 (23%), Positives = 159/405 (39%), Gaps = 66/405 (16%)
Query: 15 PSTPTPNHLRHYHFSYLDQTAPPLYVSLLYFYHLDDHKLVSNNNHLFINSLKSSLSNVLT 74
P T L+ F + +PP ++ L+FY L + S + ++K SLS L
Sbjct: 19 PDTLGDKSLQLTFFDFFWLRSPP--INNLFFYELPITR--SQFTETVVPNIKHSLSITLK 74
Query: 75 KYYPLAGRV----------KNNYVDCNDEGVVFSEAKVSCLLSEIINELPSEFNKLRPFD 124
+YP G++ + YV+ + V F+E + +NEL N R D
Sbjct: 75 HFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLD------LNELTG--NHPRNCD 126
Query: 125 QEKDVVSING----------LPI-AIQVNMFNCGSVAIAVMISHKIADASSLITFTKNWA 173
+ D+V I G +P+ ++QV +F +AI + H + DAS+ F K W
Sbjct: 127 KFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWT 186
Query: 174 AAARGGSEN-------VFPEFAAARLFPPKDAGGSSGVSVD-----------PRPKKIVL 215
+ AR G+ + P + +P D V+ P +
Sbjct: 187 SIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAGPSDKLR 246
Query: 216 KKFLFEGPKITALRDKY--GLDNGIYPTRVEALSAFIWSRLAASTRIKISPERPYMLVHL 273
F+ I L+D+ L Y + A+IWS +A S K+ +
Sbjct: 247 ATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQ-----LFGFP 301
Query: 274 VNLRKRMEPPLPDDSFGNIIGAAVTVLEENDDDDRMVNK--FRDAICKVDKDYLKVMK-L 330
++ R R +PP+P FGN +G + + N ++ K F A + ++ K +
Sbjct: 302 IDRRARXKPPIPTAYFGNCVGGCAAIAKTN----LLIGKEGFITAAKLIGENLHKTLTDY 357
Query: 331 EHSELTDLVITNGEIVDRGE-LGYCFFSSLCKFPVYEADFGLGKP 374
+ L D + ++V G + S K Y+ DFG GKP
Sbjct: 358 KDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 131/359 (36%), Gaps = 61/359 (16%)
Query: 62 INSLKSSLSNVLTKYYPLAGRV----------KNNYVDCNDEGVVFSEAKVSCLLSEIIN 111
I +LK SLS L Y PLAG V + YV N V+FSE+ + +I
Sbjct: 57 IPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXD--FNYLIG 114
Query: 112 ELP---SEFNKLRP-FDQEKDVVSINGLPI-AIQVNMFNCGSVAIAVMISHKIADASSLI 166
P +F P + KD + P+ AIQV +F ++I H D ++++
Sbjct: 115 YHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIV 174
Query: 167 TFTKNWAAAARGGSENVFPEFAAARLFP------PKDAGGSSGVSVDPRPKK-------- 212
F + WA + G + +F A P KD G G S+ KK
Sbjct: 175 KFVRAWALLNKFGGDE---QFLANEFIPFYDRSVIKDPNG-VGXSIWNEXKKYKHXXKXS 230
Query: 213 -IVLKKFLFEGPKITALRDKYGLDNGI--------YPTRVEALSAFIWS---RLAASTRI 260
+V G I D L N + + T A++W+ + A+T
Sbjct: 231 DVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGE 290
Query: 261 KISPERPYMLVHLVNLRKRMEPPLPDDSFGNIIGAAVTVLEENDDDDR-----MVNKFRD 315
+I + R + PPLP FGN + V + D + V +
Sbjct: 291 EIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGE 350
Query: 316 AICKVDKDYLKVMKLEHSELTDLVITNGEIVDRGELGYCFFSSLCKFPVYEADFGLGKP 374
AI K KD ++ + D V + G K +Y ADFG G+P
Sbjct: 351 AIRKRXKDEEWILSGSWFKEYDKVDAKRSLSVAGS---------PKLDLYAADFGWGRP 400
>pdb|2K7P|A Chain A, Filamin A Ig-Like Domains 16-17
Length = 188
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 114 PSEFNKLRPFDQEKDVVSINGLPIAIQVNMFNCGSV-AIAVMISHKIADASSLITFTKNW 172
PSE L D D + I G P+ V+ NCG V A ++H + + + TFT N
Sbjct: 66 PSEAG-LHEMDIRYDNMHIPGSPLQFYVDYVNCGHVTAYGPGLTHGVVNKPA--TFTVNT 122
Query: 173 AAAARGG 179
A GG
Sbjct: 123 KDAGEGG 129
>pdb|2XWG|A Chain A, Crystal Structure Of Sortase C-1 From Actinomyces Oris
(Formerly Actinomyces Naeslundii)
pdb|2XWG|B Chain B, Crystal Structure Of Sortase C-1 From Actinomyces Oris
(Formerly Actinomyces Naeslundii)
pdb|2XWG|C Chain C, Crystal Structure Of Sortase C-1 From Actinomyces Oris
(Formerly Actinomyces Naeslundii)
pdb|2XWG|D Chain D, Crystal Structure Of Sortase C-1 From Actinomyces Oris
(Formerly Actinomyces Naeslundii)
pdb|2XWG|E Chain E, Crystal Structure Of Sortase C-1 From Actinomyces Oris
(Formerly Actinomyces Naeslundii)
Length = 235
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 36 PPLYVSLLYFYHLDDHKLVSNNNHLFINSLK---SSLSNVLTKYYPLAGRVKNNYVDCND 92
P ++VSL ++ D L HLF SL S +VLT + L+ + ++
Sbjct: 108 PSIHVSLPIYHGTDSRTLTEGVGHLFGTSLPVGGPSTHSVLTGHTGLSTATMFDNLNQLK 167
Query: 93 EGVVFSEAKVSCLLSEIINEL----PSEFNKLRPFDQEKDVVSINGLPIAI 139
+G VF + + L +N++ P E + LR V I P +
Sbjct: 168 KGDVFYVSSLGQTLKYEVNDITVVKPEETDSLRKVPGRDLVTLITCTPYGV 218
>pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Silicibacter Pomeroyi
Length = 378
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 359 LCKFPVYEADFGLGKPMWVAWGRLPYKNI-IHLIDTKSGDGIEAW 402
+ + VY+ D L P W++ GRL ++ + L+ ++ GI W
Sbjct: 5 ITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGW 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,223,242
Number of Sequences: 62578
Number of extensions: 563338
Number of successful extensions: 1435
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1399
Number of HSP's gapped (non-prelim): 17
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)