Query 044243
Match_columns 425
No_of_seqs 148 out of 1191
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 22:31:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044243.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044243hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5aa1 c.43.1.2 (A:1-174) Vib 97.4 6E-05 4.3E-09 63.1 5.4 122 38-177 19-146 (174)
2 d1q9ja1 c.43.1.2 (A:1-175) Pol 97.4 0.00042 3E-08 57.7 9.7 130 27-177 9-144 (175)
3 d1q9ja2 c.43.1.2 (A:181-418) P 97.3 0.0013 9.7E-08 57.2 12.9 101 214-320 32-134 (238)
4 d1l5aa2 c.43.1.2 (A:175-424) V 83.7 10 0.00075 31.2 16.9 98 212-321 33-132 (250)
5 d1q23a_ c.43.1.1 (A:) Chloramp 72.1 1 7.4E-05 37.7 2.9 28 149-176 181-208 (214)
6 d3claa_ c.43.1.1 (A:) Chloramp 71.1 1.1 8.1E-05 37.4 2.9 29 149-177 181-209 (213)
7 d1b5sa_ c.43.1.1 (A:) Dihydrol 56.7 2.8 0.0002 35.5 2.8 29 149-177 207-235 (242)
8 d1dpba_ c.43.1.1 (A:) Dihydrol 56.4 3 0.00022 35.4 2.9 27 151-177 210-236 (243)
9 d1scza_ c.43.1.1 (A:) Dihydrol 54.9 3.3 0.00024 34.9 2.9 29 149-177 196-224 (233)
10 d1x93a1 a.43.1.3 (A:31-73) Unc 17.1 79 0.0057 17.4 3.4 20 216-235 4-23 (43)
No 1
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=97.45 E-value=6e-05 Score=63.11 Aligned_cols=122 Identities=10% Similarity=-0.002 Sum_probs=74.1
Q ss_pred ccceEEEEEcCCCccccCCCchhhHHHHHHHHHHhcccccCCCeeeccceeeeCCCCceEEEEEeccccccccC-CChh-
Q 044243 38 LYVSLLYFYHLDDHKLVSNNNHLFINSLKSSLSNVLTKYYPLAGRVKNNYVDCNDEGVVFSEAKVSCLLSEIIN-ELPS- 115 (425)
Q Consensus 38 ~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~~~i~~~~~Gv~f~~a~~~~~l~~l~~-p~~~- 115 (425)
.+....+.++..+.. .. ++|++++.+++..+|.|--++.. ++++. .........+.++.. .+..
T Consensus 19 ~~yni~~~~~i~g~l-------d~-~~l~~A~~~l~~rh~~LRt~f~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (174)
T d1l5aa1 19 NLDTVAHSLRLTGPL-------DT-TLLLRALHLTVSEIDLFRARFSA-----QGELY-WHPFSPPIDYQDLSIHLEAEP 84 (174)
T ss_dssp CCSEEEEEEEEESSC-------CH-HHHHHHHHHHHHTCGGGGEEECT-----TCCEE-ECSSCCCCEEEECTTCTTHHH
T ss_pred CeeeccEEEEEcCCC-------CH-HHHHHHHHHHHHhCchheEEEec-----cCcEE-EEEEeeceeeEecccccchHH
Confidence 344455555554432 36 99999999999999999777752 11110 000000111222211 1110
Q ss_pred ----hhcccCCCCCcCCCccCCCCcEEEEEEEEccCeEEEEEccceeecchhhHHHHHHHHHHHhc
Q 044243 116 ----EFNKLRPFDQEKDVVSINGLPIAIQVNMFNCGSVAIAVMISHKIADASSLITFTKNWAAAAR 177 (425)
Q Consensus 116 ----~~~~l~p~~~~~~~~~~~~P~l~vQvt~~~cgG~~l~~~~~H~v~Dg~g~~~fl~~wa~~~r 177 (425)
...... .. ..+....|++.+.+-....|...+.+.+||.++||.|+..|++.++++++
T Consensus 85 ~~~~~~~~~~-~~---~~dl~~~pl~r~~l~~~~~~~~~l~~~~hHii~Dg~S~~~l~~el~~~Y~ 146 (174)
T d1l5aa1 85 LAWRQIEQDL-QR---SSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQ 146 (174)
T ss_dssp HHHHHHHHHH-TS---CCCCBTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hC---CccccCCCcEEEEEEEeCCCceEEeeecccEEEcHhHHHHHHHHHHHHHH
Confidence 011100 00 12234568888888888778889999999999999999999999998875
No 2
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.36 E-value=0.00042 Score=57.66 Aligned_cols=130 Identities=10% Similarity=0.049 Sum_probs=74.1
Q ss_pred cCCcccccCC--CccceEEEEEcCCCccccCCCchhhHHHHHHHHHHhcccccCCCeeeccceeeeCCCCceEEEEEecc
Q 044243 27 HFSYLDQTAP--PLYVSLLYFYHLDDHKLVSNNNHLFINSLKSSLSNVLTKYYPLAGRVKNNYVDCNDEGVVFSEAKVSC 104 (425)
Q Consensus 27 ~Ls~lD~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~~~i~~~~~Gv~f~~a~~~~ 104 (425)
+|+..++... ..++...+-.+.+- .. ++|++++..+++.+|.|-.+++. .+.|..........
T Consensus 9 ~l~~~e~~~~~~~~~~~~~~~l~g~l---------d~-~~l~~A~~~lv~rh~~LRt~f~~-----~~~~~~~~~~~~~~ 73 (175)
T d1q9ja1 9 KLSHSEEVFAQYEVFTSMTIQLRGVI---------DV-DALSDAFDALLETHPVLASHLEQ-----SSDGGWNLVADDLL 73 (175)
T ss_dssp ECCHHHHHHHHTTCEEEEEEEEESCC---------CH-HHHHHHHHHHHHHCGGGSEEEEE-----CTTSSEEEEECCSS
T ss_pred HhCHHhhhcccCceEEEEEEEEcCCC---------CH-HHHHHHHHHHHHhchhheEEEEE-----eCCeeEEEEECCCC
Confidence 4777777653 34444444343332 37 99999999999999999999861 11222111111110
Q ss_pred ----ccccccCCChhhhcccCCCCCcCCCccCCCCcEEEEEEEEccCeEEEEEccceeecchhhHHHHHHHHHHHhc
Q 044243 105 ----LLSEIINELPSEFNKLRPFDQEKDVVSINGLPIAIQVNMFNCGSVAIAVMISHKIADASSLITFTKNWAAAAR 177 (425)
Q Consensus 105 ----~l~~l~~p~~~~~~~l~p~~~~~~~~~~~~P~l~vQvt~~~cgG~~l~~~~~H~v~Dg~g~~~fl~~wa~~~r 177 (425)
...+...........-.+. ....+.|+..+.+..-. ++..|.+.+||.++||.|+..|++.+.+.+.
T Consensus 74 ~~~~~~~d~~~~~~~~~~~~~~~-----~l~~~~~l~~~~i~~~~-~~~~l~l~~HH~i~Dg~S~~~ll~el~~~Y~ 144 (175)
T d1q9ja1 74 HSGICVIDGTAATNGSPSGNAEL-----RLDQSVSLLHLQLILRE-GGAELTLYLHHCMADGHHGAVLVDELFSRYT 144 (175)
T ss_dssp SCCCEEEC------------CCC-----CCCTTTCSEEEEEECCS-SSCEEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEcccchhHHHHhhccc-----CccCCCCeEEEEEEecC-CeEEEEEEccccccCHhHHHHHHHHHHHHHH
Confidence 0111111000000000111 11234566666655444 8888999999999999999999999987764
No 3
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.30 E-value=0.0013 Score=57.24 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=80.3
Q ss_pred EEEEEEechHhHHHHHHHhCCCCCCCCChhhhHHHHHHHHHHhhhcCCCCCCCceEEEEEeecccccCCCCCCCCcccce
Q 044243 214 VLKKFLFEGPKITALRDKYGLDNGIYPTRVEALSAFIWSRLAASTRIKISPERPYMLVHLVNLRKRMEPPLPDDSFGNII 293 (425)
Q Consensus 214 ~~~~f~~s~~~l~~Lk~~~~~~~~~~~St~d~l~A~lW~~~~rAr~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~ 293 (425)
....+.+|++.-++|++.|.+ ..+|.++++.|.+-..+.+-.+. .+....+.++++.|+++.|+...+.+||.+
T Consensus 32 ~~~~~~ls~~~t~~l~~~~~~---~~~T~~~~l~aa~~~~l~~~~~~---~~~~~~~~~~~~~r~~~~~~~~~~~~G~~~ 105 (238)
T d1q9ja2 32 PVTRLWLSKQQTSDLMAFGRE---HRLSLNAVVAAAILLTEWQLRNT---PHVPIPYVYPVDLRFVLAPPVAPTEATNLL 105 (238)
T ss_dssp CEEEECCCHHHHHHHHHHHTT---TTCCHHHHHHHHHHHHHHHHHTC---SSCCEEEEEEEETTTTSSSCCCTTTBSCCE
T ss_pred ceEEEEeCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHhCC---CCccccccccccccccccCccccceeEeee
Confidence 355678999999999999986 45899999998765555544332 135678899999999998888888999999
Q ss_pred eec-eecccCcC-cHHHHHHHHHHHHHhh
Q 044243 294 GAA-VTVLEEND-DDDRMVNKFRDAICKV 320 (425)
Q Consensus 294 ~~~-~~~~~~~~-~l~~~A~~iR~ai~~~ 320 (425)
... ..+.++.+ ++.++++.+++.+.+.
T Consensus 106 ~~~~~r~~~~~~~~~~~l~~~v~~~l~~~ 134 (238)
T d1q9ja2 106 GAASYLAEIGPNTDIVDLASDIVATLRAD 134 (238)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 988 77776554 8999999998888654
No 4
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Probab=83.71 E-value=10 Score=31.15 Aligned_cols=98 Identities=11% Similarity=-0.014 Sum_probs=69.1
Q ss_pred ceEEEEEEechHhHHHHHHHhCCCCCCCCChhhhHHHHHHHHHHhhhcCCCCCCCceEEEEEeecccccCCCCCCCCccc
Q 044243 212 KIVLKKFLFEGPKITALRDKYGLDNGIYPTRVEALSAFIWSRLAASTRIKISPERPYMLVHLVNLRKRMEPPLPDDSFGN 291 (425)
Q Consensus 212 ~~~~~~f~~s~~~l~~Lk~~~~~~~~~~~St~d~l~A~lW~~~~rAr~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN 291 (425)
......+.++.+..++|++.|.+ ..+|.+.++.|. |..+. ++.. .+...+..++..|.. + --.+.+|.
T Consensus 33 ~~~~~~~~l~~~~~~~l~~~a~~---~~~s~~~~l~aa-~~~~l-~~~~----~~~~vig~~~~~R~~--~-~~~~~~G~ 100 (250)
T d1l5aa2 33 HAVSLSYTLNSQLNHLLLKLANA---NQIGWPDALVAL-CALYL-ESAE----PDAPWLWLPFMNRWG--S-VAANVPGL 100 (250)
T ss_dssp CEEEEEEECCHHHHHHHHHHHHH---TTCCHHHHHHHH-HHHHH-HHHS----TTCCEEEEEECCCTT--S-GGGGSCSC
T ss_pred CceEEEEEECHHHHHHHHHHHHh---cCCCHHHHHHHH-HHHHh-hhhc----cceeeccceecCCCC--h-hhhhCeEe
Confidence 45567788999999999998875 458888888886 55554 3321 134568999999963 2 23467787
Q ss_pred ceeec-eecccCcC-cHHHHHHHHHHHHHhhh
Q 044243 292 IIGAA-VTVLEEND-DDDRMVNKFRDAICKVD 321 (425)
Q Consensus 292 ~~~~~-~~~~~~~~-~l~~~A~~iR~ai~~~~ 321 (425)
++... +.+..+.+ ++.++...+++.+.+.-
T Consensus 101 ~~n~lP~r~~~~~~~t~~~ll~~v~~~~~~~~ 132 (250)
T d1l5aa2 101 MVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLY 132 (250)
T ss_dssp CCEEEEEECCCCTTCBHHHHHHHHHHHHHHHH
T ss_pred EEeeeeEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence 77666 66665555 88888888888876643
No 5
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=72.09 E-value=1 Score=37.66 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=25.3
Q ss_pred EEEEEccceeecchhhHHHHHHHHHHHh
Q 044243 149 VAIAVMISHKIADASSLITFTKNWAAAA 176 (425)
Q Consensus 149 ~~l~~~~~H~v~Dg~g~~~fl~~wa~~~ 176 (425)
+-|++++||.++||.-..+|++.+.+..
T Consensus 181 mplsls~dHrvvDG~~~a~Fl~~lq~~l 208 (214)
T d1q23a_ 181 MPLAIQVHHAVCDGFHVGRMLNELQQYC 208 (214)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHH
Confidence 3589999999999999999999998875
No 6
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=71.09 E-value=1.1 Score=37.36 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=26.3
Q ss_pred EEEEEccceeecchhhHHHHHHHHHHHhc
Q 044243 149 VAIAVMISHKIADASSLITFTKNWAAAAR 177 (425)
Q Consensus 149 ~~l~~~~~H~v~Dg~g~~~fl~~wa~~~r 177 (425)
+-|++++||.++||.-...|++.+.+.+.
T Consensus 181 m~lsls~dHrviDG~~aa~Fl~~lk~~le 209 (213)
T d3claa_ 181 LPLSVQVHHAVCDGFHVARFINRLQELCN 209 (213)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEecccccccHHHHHHHHHHHHHHh
Confidence 55899999999999999999999988764
No 7
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=56.65 E-value=2.8 Score=35.51 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=26.2
Q ss_pred EEEEEccceeecchhhHHHHHHHHHHHhc
Q 044243 149 VAIAVMISHKIADASSLITFTKNWAAAAR 177 (425)
Q Consensus 149 ~~l~~~~~H~v~Dg~g~~~fl~~wa~~~r 177 (425)
+-|++++.|.+.||.-...|++.|.+...
T Consensus 207 m~lslt~DHRviDGa~aa~Fl~~l~~~lE 235 (242)
T d1b5sa_ 207 LALSLSFDHRMIDGATAQKALNHIKRLLS 235 (242)
T ss_dssp EEEEEEECTTTSCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcchhChHHHHHHHHHHHHHHh
Confidence 45899999999999999999999998754
No 8
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=56.38 E-value=3 Score=35.39 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=25.3
Q ss_pred EEEccceeecchhhHHHHHHHHHHHhc
Q 044243 151 IAVMISHKIADASSLITFTKNWAAAAR 177 (425)
Q Consensus 151 l~~~~~H~v~Dg~g~~~fl~~wa~~~r 177 (425)
|++++.|.+.||.....|++.|.+...
T Consensus 210 ltls~DHRvidGa~aa~FL~~l~~~lE 236 (243)
T d1dpba_ 210 LSLSYDCRVINGAAAARFTKRLGDLLA 236 (243)
T ss_dssp EEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEeecccccHHHHHHHHHHHHHHHh
Confidence 899999999999999999999998764
No 9
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=54.90 E-value=3.3 Score=34.86 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=26.5
Q ss_pred EEEEEccceeecchhhHHHHHHHHHHHhc
Q 044243 149 VAIAVMISHKIADASSLITFTKNWAAAAR 177 (425)
Q Consensus 149 ~~l~~~~~H~v~Dg~g~~~fl~~wa~~~r 177 (425)
+.|++++.|.+.||.-...|++.|.+...
T Consensus 196 ~~lsls~DHRviDGa~aa~Fl~~l~~~lE 224 (233)
T d1scza_ 196 MYLALSYDHRLIDGRESVGFLVTIKELLE 224 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEhhcchhccHHHHHHHHHHHHHHh
Confidence 56999999999999999999999998764
No 10
>d1x93a1 a.43.1.3 (A:31-73) Uncharacterized protein HP0222 {Helicobacter pylori [TaxId: 210]}
Probab=17.10 E-value=79 Score=17.42 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=17.3
Q ss_pred EEEEechHhHHHHHHHhCCC
Q 044243 216 KKFLFEGPKITALRDKYGLD 235 (425)
Q Consensus 216 ~~f~~s~~~l~~Lk~~~~~~ 235 (425)
..++||.++.++|.+.++++
T Consensus 4 vslyfsdeqyqklekmanee 23 (43)
T d1x93a1 4 VSLYFSDEQYQKLEKMANEE 23 (43)
T ss_dssp EEEEECHHHHHHHHHHHHHT
T ss_pred eeeEecHHHHHHHHHHhhhh
Confidence 46789999999999999865
Done!