BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044245
(694 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 140/303 (46%), Gaps = 43/303 (14%)
Query: 45 DMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGM 102
+ML D R YR ++ ++ + K VLD+G+GTG+L M AA+A K +
Sbjct: 34 EMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR---------KVI 84
Query: 103 VTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELL 162
C S + K++ N + + +I + +E+E+ V+ + DI++SE + L
Sbjct: 85 GIECSS---ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVE---KVDIIISEWMGYCLF 138
Query: 163 GEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFL--WKLH---DLYNNEAKALDD 217
E ++ T+ HA D+ L + L P R T Y +E +K+H ++Y + + D
Sbjct: 139 YESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKD 198
Query: 218 IHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKS 277
+ + +D V +Q + + KE+ + + + F LQ+K
Sbjct: 199 VAIKEPLVDV---VDPKQLVTNA-CLIKEVDIYTVKVEDLTFT--------SPFCLQVKR 246
Query: 278 TDDGRVHAVVSWWVLQLDR-EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGE 336
D VHA+V+++ ++ R +ST+P T HWKQ V+++ +++ GE
Sbjct: 247 ND--YVHALVAYFNIEFTRCHKRTGFSTSPESPYT-----HWKQTVFYMEDY-LTVKTGE 298
Query: 337 ELL 339
E+
Sbjct: 299 EIF 301
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 140/303 (46%), Gaps = 43/303 (14%)
Query: 45 DMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGM 102
+ML D R YR ++ ++ + K VLD+G+GTG+L M AA+A K +
Sbjct: 37 EMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR---------KVI 87
Query: 103 VTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELL 162
C S + K++ N + + +I + +E+E+ V+ + DI++SE + L
Sbjct: 88 GIECSS---ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVE---KVDIIISEWMGYCLF 141
Query: 163 GEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFL--WKLH---DLYNNEAKALDD 217
E ++ T+ HA D+ L + L P R T Y +E +K+H ++Y + + D
Sbjct: 142 YESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKD 201
Query: 218 IHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKS 277
+ + +D V +Q + + KE+ + + + F LQ+K
Sbjct: 202 VAIKEPLVDV---VDPKQLVTNA-CLIKEVDIYTVKVEDLTFT--------SPFCLQVKR 249
Query: 278 TDDGRVHAVVSWWVLQLDR-EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGE 336
D VHA+V+++ ++ R +ST+P T HWKQ V+++ +++ GE
Sbjct: 250 ND--YVHALVAYFNIEFTRCHKRTGFSTSPESPYT-----HWKQTVFYMEDY-LTVKTGE 301
Query: 337 ELL 339
E+
Sbjct: 302 EIF 304
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 140/303 (46%), Gaps = 43/303 (14%)
Query: 45 DMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGM 102
+ML D R YR ++ ++ + K VLD+G+GTG+L M AA+A K +
Sbjct: 47 EMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR---------KVI 97
Query: 103 VTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELL 162
C S + K++ N + + +I + +E+E+ V+ + DI++SE + L
Sbjct: 98 GIECSS---ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVE---KVDIIISEWMGYCLF 151
Query: 163 GEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFL--WKLH---DLYNNEAKALDD 217
+ ++ T+ HA D+ L + L P R T Y +E +K+H ++Y + + D
Sbjct: 152 YQSMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKD 211
Query: 218 IHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKS 277
+ + +D V +Q + + KE+ + + + F LQ+K
Sbjct: 212 VAIKEPLVDV---VDPKQLVTNA-CLIKEVDIYTVKVEDLTFT--------SPFCLQVKR 259
Query: 278 TDDGRVHAVVSWWVLQLDR-EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGE 336
D VHA+V+++ ++ R +ST+P T HWKQ V+++ +++ GE
Sbjct: 260 ND--YVHALVAYFNIEFTRCHKRTGFSTSPESPYT-----HWKQTVFYMEDY-LTVKTGE 311
Query: 337 ELL 339
E+
Sbjct: 312 EIF 314
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 140/303 (46%), Gaps = 43/303 (14%)
Query: 45 DMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGM 102
++L D R YR ++ ++ + K VLD+G+GTG+L M AA+A K +
Sbjct: 43 ELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR---------KVI 93
Query: 103 VTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELL 162
C S + K++ N + + +I + +E+E+ V+ + DI++SE + L
Sbjct: 94 GIECSS---ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVE---KVDIIISEWMGYCLF 147
Query: 163 GEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFL--WKLH---DLYNNEAKALDD 217
E ++ T+ HA D+ L + L P R T Y +E +K+H ++Y + + D
Sbjct: 148 YESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKD 207
Query: 218 IHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKS 277
+ + +D V +Q + + KE+ + + + F LQ+K
Sbjct: 208 VAIKEPLVDV---VDPKQLVTNA-CLIKEVDIYTVKVEDLTFT--------SPFCLQVKR 255
Query: 278 TDDGRVHAVVSWWVLQLDR-EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGE 336
D VHA+V+++ ++ R +ST+P T HWKQ V+++ +++ GE
Sbjct: 256 ND--YVHALVAYFNIEFTRCHKRTGFSTSPESPYT-----HWKQTVFYMEDY-LTVKTGE 307
Query: 337 ELL 339
E+
Sbjct: 308 EIF 310
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 127/287 (44%), Gaps = 34/287 (11%)
Query: 45 DMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGM 102
+ML D+ R +YR AI +K + K VLD+G GTG+LSM AA+ +++
Sbjct: 15 EMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS--- 71
Query: 103 VTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELL 162
++++ K+++ +NG I ++ + +++ + + DI++SE + LL
Sbjct: 72 ---------IIEMAKELVELNGFSDKITLLRGKLEDVHLPF---PKVDIIISEWMGYFLL 119
Query: 163 GEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVP 222
E ++ T+ +A D LVE L P + + + +E + Y + D VP
Sbjct: 120 YESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVP 179
Query: 223 AGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGR 282
+LH + T KL+ F+ + K D ++ ++ +
Sbjct: 180 L----VLHEPIVDTVERNNVNTTSDKLIE-----FDLNTVKISDLAFKSNFKLTAKRQDM 230
Query: 283 VHAVVSWWVLQL---DREGTIFYSTAPRWISTGNWCDHWKQCVWFIP 326
++ +V+W+ + + + +ST P T HWKQ +++ P
Sbjct: 231 INGIVTWFDIVFPAPKGKRPVEFSTGPHAPYT-----HWKQTIFYFP 272
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 131/307 (42%), Gaps = 52/307 (16%)
Query: 45 DMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGM 102
+ML D R +YR I + + K VLD+G GTG+LSM AA+A K +
Sbjct: 41 EMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA----------GAKKV 90
Query: 103 VTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELL 162
+ +S + + ++ +N + I +I + +E+ + V+ + D+++SE + LL
Sbjct: 91 LGVDQSEILYQAM--DIIRLNKLEDTITLIKGKIEEVHLPVE---KVDVIISEWMGYFLL 145
Query: 163 GEGLIPTLQHAHDRLLVENPLTVP-------CRVTTYGQLVESTFLWKLHDLYNNEAKAL 215
E ++ ++ +A ++ L + P V+ + + W D+Y + +
Sbjct: 146 FESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWD--DVYGFKMSCM 203
Query: 216 DDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGE--AEL 273
++P + +L K+ L+SEP I D S E ++
Sbjct: 204 KKA-VIPEAVVEVLDPKT---------------LISEPCGIKHIDCHTTSISDLEFSSDF 247
Query: 274 QIKSTDDGRVHAVVSWWVLQLDR--EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMS 331
+K T A+ ++ + ++ + +ST P+ T HWKQ V F+ K S
Sbjct: 248 TLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKT-----HWKQTV-FLLEKPFS 301
Query: 332 ICKGEEL 338
+ GE L
Sbjct: 302 VKAGEAL 308
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 611 VEFTEPGLCHGFALWIDWVLDS--ENSIVISTGPD--KRYWKQGVKLMAKPVAVGFEES 665
++ T +C A + D + N +V STGP K +WKQ V L+ KP +V E+
Sbjct: 249 LKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEA 307
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 128/307 (41%), Gaps = 52/307 (16%)
Query: 45 DMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGM 102
+ML D R +YR I + + K VLD+G GTG+LSM AA+A
Sbjct: 22 EMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK----------- 70
Query: 103 VTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELL 162
V A + + + M ++ +N + I +I + +E+ + V+ + D+++SE + LL
Sbjct: 71 VIAVDQSEILYQAM-DIIRLNKLEDTIVLIKGKIEEVSLPVE---KVDVIISEWMGYFLL 126
Query: 163 GEGLIPTLQHAHDRLLVENPLTVP-------CRVTTYGQLVESTFLWKLHDLYNNEAKAL 215
E ++ ++ +A + L + P V+ + + W D+Y +
Sbjct: 127 FESMLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADRIAFWD--DVYGFNMSCM 184
Query: 216 DDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGE--AEL 273
++P + ++ K+ L+S+P I D S E ++
Sbjct: 185 KKA-VIPEAVVEVVDHKT---------------LISDPCDIKHIDCHTTSISDLEFSSDF 228
Query: 274 QIKSTDDGRVHAVVSWWVLQLDR--EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMS 331
+++T AV ++ + ++ + +ST P+ T HWKQ + F+ K
Sbjct: 229 TLRTTKTAMCTAVAGYFDIYFEKNCHNRVVFSTGPQSTKT-----HWKQTI-FLLEKPFP 282
Query: 332 ICKGEEL 338
+ GE L
Sbjct: 283 VKAGEAL 289
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 614 TEPGLCHGFALWIDWVLDS--ENSIVISTGPD--KRYWKQGVKLMAKPVAVGFEES 665
T+ +C A + D + N +V STGP K +WKQ + L+ KP V E+
Sbjct: 233 TKTAMCTAVAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTIFLLEKPFPVKAGEA 288
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 45 DMLNDSYRNRAYRLAIDK--MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGM 102
+M+ D R AYRL I + + VLD+GAGTG+LS+ A+A
Sbjct: 60 EMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARR----------- 108
Query: 103 VTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELL 162
V A E+ + + ++V+ NG+ + V+ + +E+ +D+ +VSE + LL
Sbjct: 109 VYAVEAS-AIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDA----IVSEWMGYGLL 163
Query: 163 GEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFL-WKL 204
E ++ ++ HA + L E L +P + + L W+L
Sbjct: 164 HESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQMLEWRL 206
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 26 NEDVPESSQEPLLATTSYL----DMLNDSYRNRAYRLAIDKMVT--KSCHVLDIGAGTGL 79
+E ESS YL +M+ D R Y+ AI + T K VLD+G G+G+
Sbjct: 112 SERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGI 171
Query: 80 LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDEL 139
LS AA+A +T M + + ++ N + I VI + +E
Sbjct: 172 LSFFAAQAGARKIYAVEAST------------MAQHAEVLVKSNNLTDRIVVIPGKVEE- 218
Query: 140 EVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRL 177
V + + DI++SE + L E ++ + HA L
Sbjct: 219 ---VSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYL 253
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 26 NEDVPESSQEPLLATTSYL----DMLNDSYRNRAYRLAIDKMVT--KSCHVLDIGAGTGL 79
+E ESS YL +M+ D R Y+ AI + T K VLD+G G+G+
Sbjct: 4 SERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGI 63
Query: 80 LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDEL 139
LS AA+A +T M + + ++ N + I VI + +E
Sbjct: 64 LSFFAAQAGARKIYAVEAST------------MAQHAEVLVKSNNLTDRIVVIPGKVEE- 110
Query: 140 EVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRL 177
V + + DI++SE + L E ++ + HA L
Sbjct: 111 ---VSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYL 145
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 27 EDVPESSQEPLLATTSYL----DMLNDSYRNRAYRLAIDKMVT--KSCHVLDIGAGTGLL 80
E ESS YL +M+ D R Y+ AI + T K VLD+G G+G+L
Sbjct: 1 ERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGIL 60
Query: 81 SMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELE 140
S AA+A +T M + + ++ N + I VI + +E
Sbjct: 61 SFFAAQAGARKIYAVEAST------------MAQHAEVLVKSNNLTDRIVVIPGKVEE-- 106
Query: 141 VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRL 177
V + + DI++SE + L E ++ + HA L
Sbjct: 107 --VSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYL 141
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 45 DMLNDSYRNRAYRLAIDKMVT--KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGM 102
+M+ D R Y+ AI + T K VLD+G G+G+LS AA+A +T
Sbjct: 18 NMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST--- 74
Query: 103 VTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELL 162
M + + ++ N + I VI + +E V + + DI++SE + L
Sbjct: 75 ---------MAQHAEVLVKSNNLTDRIVVIPGKVEE----VSLPEQVDIIISEPMGYMLF 121
Query: 163 GEGLIPTLQHAHDRL 177
E ++ + HA L
Sbjct: 122 NERMLESYLHAKKYL 136
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 31 ESSQEPLLATTSYL----DMLNDSYRNRAYRLAIDKMVT--KSCHVLDIGAGTGLLSMMA 84
ESS YL +M+ D R Y+ AI + T K VLD+G G+G+LS A
Sbjct: 4 ESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFA 63
Query: 85 ARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144
A+A +T M + + ++ N + I VI + +E V
Sbjct: 64 AQAGARKIYAVEAST------------MAQHAEVLVKSNNLTDRIVVIPGKVEE----VS 107
Query: 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRL 177
+ + DI++SE + L E ++ + HA L
Sbjct: 108 LPEQVDIIISEPMGYMLFNERMLESYLHAKKYL 140
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 45 DMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGM 102
DML+D R AY A+ +K + VLD+G G+G+L++ +A+A
Sbjct: 40 DMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARK----------- 88
Query: 103 VTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELL 162
V A E+ M + ++ N + ++VI ++ + + + D+++SE + LL
Sbjct: 89 VYAVEA-TKMADHARALVKANNLDHIVEVIEGSVED----ISLPEKVDVIISEWMGYFLL 143
Query: 163 GEGLIPTLQHAHDRLLVENPLTVPCRV 189
E + ++ A DR L + P
Sbjct: 144 RESMFDSVISARDRWLKPTGVMYPSHA 170
>pdb|4GWH|A Chain A, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|B Chain B, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|C Chain C, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|D Chain D, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|E Chain E, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|F Chain F, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|G Chain G, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|H Chain H, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
Length = 288
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 395 MAMRNALQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQY-LRTVADPN 453
+ +R G+V + A T+ R + H L PG K Y + T+ D N
Sbjct: 29 LGLRQVFGGQVVGQAIYAAKQ---TVPAERTVHSFHSYFLRPGDSSKPIIYDVETLRDGN 85
Query: 454 CFSIDRVEILQKGKKCLTMDDTQQKK 479
FS RV +Q GK M + Q +
Sbjct: 86 SFSARRVSAIQNGKPIFYMTASFQSQ 111
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 19/113 (16%)
Query: 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMK 117
L I++ + K V D+G G+G+L++ A + S T ++ + M A E+
Sbjct: 52 LGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEEN--------- 102
Query: 118 KVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTL 170
+NG+ + +++ L D+D + D++V+ IL LL LIP L
Sbjct: 103 --AALNGI---YDIALQKTSLL---ADVDGKFDLIVANILAEILL--DLIPQL 145
>pdb|1O66|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O66|B Chain B, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O66|C Chain C, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O66|D Chain D, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O66|E Chain E, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O68|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O68|B Chain B, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O68|C Chain C, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O68|D Chain D, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O68|E Chain E, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
Length = 275
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 396 AMRNALQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLP 436
++ A+QGR L V D + T CVAR +K A ++S LP
Sbjct: 46 SLGXAVQGRKSTLPVSLRDXCYHTECVARGAKNAXIVSDLP 86
>pdb|3VAV|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|B Chain B, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|C Chain C, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|D Chain D, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|E Chain E, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|F Chain F, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|G Chain G, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|H Chain H, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|I Chain I, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|J Chain J, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
Length = 275
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 396 AMRNALQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLP 436
++ N LQG+ L V DD + T CVAR A +++ LP
Sbjct: 58 SLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLP 98
>pdb|3EZ4|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|B Chain B, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|C Chain C, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|D Chain D, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|E Chain E, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|F Chain F, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|G Chain G, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|H Chain H, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|I Chain I, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|J Chain J, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
Length = 269
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 396 AMRNALQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLP 436
++ N LQG+ L V DD + T CVAR V++ LP
Sbjct: 52 SLGNVLQGQATTLPVTLDDIAYHTACVARAQPRGLVVADLP 92
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 70 VLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNI 129
VLD+G G G+LS+ AR + K +T C+ P V+ + L NG+ +
Sbjct: 200 VLDVGCGAGVLSVAFARH----------SPKIRLTLCDVSAPAVEASRATLAANGVEGEV 249
Query: 130 KVINKRSDELEVGVDIDSRADILVS 154
N V ++ R D ++S
Sbjct: 250 FASN-------VFSEVKGRFDXIIS 267
>pdb|3BKX|A Chain A, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
Length = 275
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 52 RNRAYRLAIDK--MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLN 98
R A+RLAI + V +L+IG G G LS + A +GSS T ++
Sbjct: 27 RQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|B Chain B, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|C Chain C, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|D Chain D, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
Length = 435
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN---- 123
C ++G G A +AMGS T ++ + AC +VKL + + V+
Sbjct: 226 CGYGEVGKG----CCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVIT 281
Query: 124 GMGRNIKVINKRSDELEVGVDI----DSRADILVSEILDSELLGEGLIPTLQH------- 172
G V + D ++ + S +I V+ + EL E + + H
Sbjct: 282 CTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGK 341
Query: 173 -----AHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNN-EAKALDDIHLVPAGMD 226
A RLL + TVP V + + +T L +LYN E + D++L+P MD
Sbjct: 342 RIVLLAEGRLLNLSCSTVPTFVLS---ITATTQALALIELYNAPEGRYKQDVYLLPKKMD 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,382,966
Number of Sequences: 62578
Number of extensions: 909622
Number of successful extensions: 1862
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1828
Number of HSP's gapped (non-prelim): 32
length of query: 694
length of database: 14,973,337
effective HSP length: 106
effective length of query: 588
effective length of database: 8,340,069
effective search space: 4903960572
effective search space used: 4903960572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)