Query 044245
Match_columns 694
No_of_seqs 417 out of 3195
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 12:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1501 Arginine N-methyltrans 100.0 8.7E-80 1.9E-84 630.4 26.7 600 4-692 1-631 (636)
2 KOG1499 Protein arginine N-met 100.0 6.6E-59 1.4E-63 475.6 20.3 274 382-683 37-332 (346)
3 KOG1500 Protein arginine N-met 100.0 2.4E-48 5.2E-53 387.5 15.5 279 378-689 150-445 (517)
4 KOG1499 Protein arginine N-met 100.0 5.8E-43 1.3E-47 358.4 24.3 278 34-343 26-310 (346)
5 PF05185 PRMT5: PRMT5 arginine 100.0 1.5E-42 3.3E-47 379.7 21.4 293 27-356 137-447 (448)
6 PF05185 PRMT5: PRMT5 arginine 100.0 2.3E-37 5.1E-42 338.9 20.0 262 375-684 147-437 (448)
7 KOG1500 Protein arginine N-met 100.0 2.7E-35 6E-40 294.2 17.1 267 44-343 153-432 (517)
8 KOG0822 Protein kinase inhibit 100.0 3.5E-30 7.7E-35 271.9 20.0 292 27-356 319-624 (649)
9 KOG1501 Arginine N-methyltrans 100.0 4.2E-30 9.1E-35 264.9 11.3 265 370-655 24-319 (636)
10 PTZ00357 methyltransferase; Pr 99.9 5.5E-25 1.2E-29 237.8 26.8 313 27-356 626-1037(1072)
11 COG4076 Predicted RNA methylas 99.7 1.8E-16 3.9E-21 147.8 12.9 143 36-199 4-146 (252)
12 COG4076 Predicted RNA methylas 99.7 3.8E-16 8.2E-21 145.7 13.3 142 372-534 3-145 (252)
13 KOG0822 Protein kinase inhibit 99.6 2.1E-14 4.6E-19 153.1 13.3 243 385-666 340-604 (649)
14 COG2230 Cfa Cyclopropane fatty 99.5 1.2E-13 2.6E-18 141.1 11.8 159 15-192 12-180 (283)
15 PF12847 Methyltransf_18: Meth 99.5 1.5E-13 3.2E-18 123.2 10.9 109 66-187 1-110 (112)
16 PF06325 PrmA: Ribosomal prote 99.5 1.8E-13 3.9E-18 142.4 9.7 111 53-187 148-258 (295)
17 COG2264 PrmA Ribosomal protein 99.4 1.3E-12 2.7E-17 134.7 11.9 115 53-188 149-263 (300)
18 PLN02336 phosphoethanolamine N 99.4 5.8E-11 1.3E-15 134.0 26.5 104 66-186 37-140 (475)
19 PF02353 CMAS: Mycolic acid cy 99.4 8.6E-13 1.9E-17 136.8 9.7 153 20-191 7-169 (273)
20 COG2226 UbiE Methylase involve 99.4 8.1E-12 1.7E-16 125.6 13.5 115 54-185 37-153 (238)
21 PRK00107 gidB 16S rRNA methylt 99.3 9.5E-12 2.1E-16 121.8 13.3 103 63-187 42-144 (187)
22 TIGR00138 gidB 16S rRNA methyl 99.3 1.1E-11 2.5E-16 121.0 13.8 100 66-187 42-141 (181)
23 PF05175 MTS: Methyltransferas 99.3 9.2E-12 2E-16 120.6 13.1 105 66-185 31-137 (170)
24 PRK11783 rlmL 23S rRNA m(2)G24 99.3 6.1E-10 1.3E-14 130.6 29.7 89 394-490 530-620 (702)
25 COG4123 Predicted O-methyltran 99.3 1.1E-11 2.3E-16 124.6 10.7 109 66-185 44-167 (248)
26 PF13847 Methyltransf_31: Meth 99.3 2.3E-11 4.9E-16 115.6 11.7 111 65-190 2-112 (152)
27 PTZ00357 methyltransferase; Pr 99.3 1.3E-10 2.7E-15 127.6 18.5 280 385-683 647-1022(1072)
28 PF01209 Ubie_methyltran: ubiE 99.3 1.3E-11 2.9E-16 125.2 9.9 105 64-185 45-150 (233)
29 COG2227 UbiG 2-polyprenyl-3-me 99.3 1.2E-11 2.7E-16 122.0 8.5 105 65-190 58-163 (243)
30 TIGR00406 prmA ribosomal prote 99.3 5E-11 1.1E-15 125.3 13.7 113 53-187 146-258 (288)
31 PLN02396 hexaprenyldihydroxybe 99.2 7.2E-11 1.6E-15 125.1 13.3 121 49-187 105-234 (322)
32 COG2242 CobL Precorrin-6B meth 99.2 1.1E-10 2.4E-15 111.4 13.1 108 64-192 32-139 (187)
33 PRK11036 putative S-adenosyl-L 99.2 6.5E-11 1.4E-15 122.4 12.6 123 46-185 20-146 (255)
34 PLN02233 ubiquinone biosynthes 99.2 1.9E-10 4.1E-15 119.2 15.6 107 64-185 71-179 (261)
35 PF13659 Methyltransf_26: Meth 99.2 3.8E-11 8.1E-16 108.5 8.9 107 67-185 1-112 (117)
36 PRK11207 tellurite resistance 99.2 8.1E-11 1.8E-15 116.8 11.9 102 65-184 29-130 (197)
37 PLN02244 tocopherol O-methyltr 99.2 2E-10 4.4E-15 123.6 15.6 105 65-186 117-221 (340)
38 PRK15451 tRNA cmo(5)U34 methyl 99.2 1E-10 2.2E-15 120.3 12.6 113 61-187 51-163 (247)
39 PRK00517 prmA ribosomal protei 99.2 1.4E-10 3E-15 119.5 12.6 107 53-187 106-212 (250)
40 TIGR02752 MenG_heptapren 2-hep 99.2 3.4E-10 7.3E-15 115.3 14.8 106 64-185 43-148 (231)
41 PRK00377 cbiT cobalt-precorrin 99.2 3.8E-10 8.2E-15 112.2 14.7 106 64-186 38-143 (198)
42 TIGR02469 CbiT precorrin-6Y C5 99.2 5.7E-10 1.2E-14 101.5 14.7 106 64-188 17-122 (124)
43 TIGR00477 tehB tellurite resis 99.2 1.7E-10 3.7E-15 114.3 11.5 101 66-185 30-130 (195)
44 PRK13944 protein-L-isoaspartat 99.1 6E-10 1.3E-14 111.3 14.1 101 64-185 70-170 (205)
45 PRK13942 protein-L-isoaspartat 99.1 5.3E-10 1.1E-14 112.3 13.7 100 64-185 74-173 (212)
46 PRK15001 SAM-dependent 23S rib 99.1 3.2E-10 6.9E-15 122.3 12.6 105 67-185 229-337 (378)
47 PRK08287 cobalt-precorrin-6Y C 99.1 9.3E-10 2E-14 108.3 14.9 101 64-186 29-129 (187)
48 KOG1270 Methyltransferases [Co 99.1 1.5E-10 3.3E-15 114.9 8.7 99 67-187 90-194 (282)
49 TIGR03533 L3_gln_methyl protei 99.1 8.7E-10 1.9E-14 115.6 14.8 108 66-187 121-250 (284)
50 COG2890 HemK Methylase of poly 99.1 3.8E-10 8.2E-15 117.7 11.9 103 69-187 113-237 (280)
51 TIGR00080 pimt protein-L-isoas 99.1 7.3E-10 1.6E-14 111.6 13.5 100 64-185 75-174 (215)
52 PRK11873 arsM arsenite S-adeno 99.1 6.7E-10 1.5E-14 116.0 13.6 108 64-187 75-182 (272)
53 PRK12335 tellurite resistance 99.1 6.1E-10 1.3E-14 117.2 13.2 101 66-185 120-220 (287)
54 PF13649 Methyltransf_25: Meth 99.1 1.9E-10 4.2E-15 101.2 7.4 101 70-182 1-101 (101)
55 PF03848 TehB: Tellurite resis 99.1 5.5E-10 1.2E-14 108.9 11.1 101 66-185 30-130 (192)
56 PRK14966 unknown domain/N5-glu 99.1 8.6E-10 1.9E-14 119.1 13.6 122 50-185 235-378 (423)
57 PF08241 Methyltransf_11: Meth 99.1 2.5E-10 5.3E-15 98.5 7.7 94 71-185 1-94 (95)
58 TIGR00740 methyltransferase, p 99.1 1.1E-09 2.4E-14 112.2 13.5 112 62-187 49-160 (239)
59 TIGR00537 hemK_rel_arch HemK-r 99.1 1E-09 2.2E-14 107.3 12.3 103 65-186 18-138 (179)
60 PRK00121 trmB tRNA (guanine-N( 99.1 1.1E-09 2.4E-14 109.2 11.7 108 66-185 40-153 (202)
61 PRK11705 cyclopropane fatty ac 99.1 7E-10 1.5E-14 120.9 11.1 145 21-187 114-266 (383)
62 PRK10909 rsmD 16S rRNA m(2)G96 99.1 1.8E-09 4E-14 106.7 13.0 102 66-185 53-156 (199)
63 PF06325 PrmA: Ribosomal prote 99.1 3.9E-10 8.5E-15 117.6 8.6 110 390-523 148-258 (295)
64 PRK11805 N5-glutamine S-adenos 99.0 1.6E-09 3.5E-14 114.7 13.2 106 68-187 135-262 (307)
65 TIGR00536 hemK_fam HemK family 99.0 2.8E-09 6E-14 112.0 14.7 106 68-187 116-243 (284)
66 PRK14967 putative methyltransf 99.0 2.7E-09 5.9E-14 108.1 13.5 105 64-185 34-156 (223)
67 PTZ00098 phosphoethanolamine N 99.0 2.2E-09 4.8E-14 111.4 13.0 114 55-186 40-154 (263)
68 PRK04266 fibrillarin; Provisio 99.0 2.4E-09 5.3E-14 108.1 12.4 105 64-186 70-174 (226)
69 PRK09489 rsmC 16S ribosomal RN 99.0 2.3E-09 5E-14 114.9 12.5 102 67-185 197-300 (342)
70 smart00828 PKS_MT Methyltransf 99.0 2.4E-09 5.2E-14 108.5 12.1 102 68-186 1-102 (224)
71 TIGR00095 RNA methyltransferas 99.0 2.3E-09 5.1E-14 105.4 11.5 106 66-186 49-157 (189)
72 PRK15068 tRNA mo(5)U34 methylt 99.0 3.8E-09 8.3E-14 112.6 14.0 105 65-187 121-225 (322)
73 PRK04457 spermidine synthase; 99.0 2.3E-09 5E-14 111.0 11.8 121 55-187 52-176 (262)
74 TIGR00452 methyltransferase, p 99.0 3.9E-09 8.4E-14 111.5 13.7 112 58-187 112-224 (314)
75 PRK07402 precorrin-6B methylas 99.0 6.7E-09 1.4E-13 103.0 14.6 105 64-188 38-142 (196)
76 COG2813 RsmC 16S RNA G1207 met 99.0 2.6E-09 5.6E-14 109.7 11.7 102 67-184 159-262 (300)
77 PRK15128 23S rRNA m(5)C1962 me 99.0 2.4E-09 5.3E-14 116.8 11.3 116 65-192 219-343 (396)
78 PRK11783 rlmL 23S rRNA m(2)G24 99.0 2.5E-09 5.4E-14 125.6 12.1 117 57-187 530-655 (702)
79 COG2263 Predicted RNA methylas 99.0 4.2E-09 9.1E-14 100.2 11.2 90 66-175 45-135 (198)
80 TIGR00091 tRNA (guanine-N(7)-) 99.0 3.3E-09 7.2E-14 105.0 10.9 110 66-186 16-130 (194)
81 TIGR01177 conserved hypothetic 99.0 4.3E-09 9.3E-14 113.0 12.0 106 64-185 180-291 (329)
82 PRK14103 trans-aconitate 2-met 98.9 4.8E-09 1E-13 108.5 11.8 105 57-186 19-124 (255)
83 PLN02781 Probable caffeoyl-CoA 98.9 6.2E-09 1.4E-13 106.0 12.4 123 56-194 59-184 (234)
84 TIGR03704 PrmC_rel_meth putati 98.9 7E-09 1.5E-13 106.8 12.7 106 67-187 87-215 (251)
85 PF05401 NodS: Nodulation prot 98.9 3.4E-09 7.3E-14 102.2 9.1 116 55-189 30-147 (201)
86 PF08704 GCD14: tRNA methyltra 98.9 4.7E-09 1E-13 106.7 10.4 106 63-185 37-143 (247)
87 KOG2904 Predicted methyltransf 98.9 9.9E-09 2.1E-13 102.3 12.3 83 66-158 148-232 (328)
88 KOG1540 Ubiquinone biosynthesi 98.9 1.1E-08 2.5E-13 101.1 12.5 111 65-185 99-211 (296)
89 PRK06922 hypothetical protein; 98.9 8.4E-09 1.8E-13 116.3 12.9 108 66-186 418-535 (677)
90 PF01135 PCMT: Protein-L-isoas 98.9 4.2E-09 9.1E-14 104.9 9.3 100 64-185 70-169 (209)
91 PRK00312 pcm protein-L-isoaspa 98.9 1.8E-08 3.9E-13 101.2 14.0 97 64-185 76-172 (212)
92 PF08242 Methyltransf_12: Meth 98.9 6.9E-10 1.5E-14 97.2 3.2 99 71-184 1-99 (99)
93 PRK01544 bifunctional N5-gluta 98.9 8.8E-09 1.9E-13 116.3 13.0 106 67-186 139-267 (506)
94 PLN02336 phosphoethanolamine N 98.9 1.1E-08 2.3E-13 115.6 13.5 105 64-187 264-368 (475)
95 COG2519 GCD14 tRNA(1-methylade 98.9 1.2E-08 2.6E-13 101.9 11.9 101 64-185 92-192 (256)
96 TIGR03534 RF_mod_PrmC protein- 98.9 2E-08 4.3E-13 103.4 14.0 106 66-186 87-215 (251)
97 PRK10258 biotin biosynthesis p 98.9 9.9E-09 2.1E-13 105.9 11.3 96 66-185 42-137 (251)
98 COG2518 Pcm Protein-L-isoaspar 98.9 9E-09 1.9E-13 100.6 10.0 99 64-188 70-170 (209)
99 PRK01683 trans-aconitate 2-met 98.9 2E-08 4.3E-13 104.1 13.3 100 64-186 29-128 (258)
100 PRK14968 putative methyltransf 98.9 1.7E-08 3.7E-13 99.0 12.0 106 65-186 22-146 (188)
101 PHA03412 putative methyltransf 98.9 9.9E-09 2.2E-13 102.5 9.9 106 67-189 50-164 (241)
102 PLN03075 nicotianamine synthas 98.9 3.6E-08 7.9E-13 102.3 14.1 107 66-189 123-234 (296)
103 PRK13943 protein-L-isoaspartat 98.8 2.5E-08 5.4E-13 105.8 13.0 100 64-185 78-177 (322)
104 PRK05785 hypothetical protein; 98.8 3.3E-08 7.1E-13 100.3 13.3 100 57-182 42-141 (226)
105 TIGR02021 BchM-ChlM magnesium 98.8 2.5E-08 5.5E-13 100.7 12.5 102 65-185 54-155 (219)
106 PRK00216 ubiE ubiquinone/menaq 98.8 2.8E-08 6.1E-13 101.3 12.9 106 65-185 50-155 (239)
107 PLN02476 O-methyltransferase 98.8 2.8E-08 6E-13 102.6 12.7 114 66-194 118-234 (278)
108 PF02475 Met_10: Met-10+ like- 98.8 8.9E-09 1.9E-13 101.5 8.7 107 57-184 92-198 (200)
109 PHA03411 putative methyltransf 98.8 4.1E-08 8.8E-13 100.4 13.5 116 66-202 64-189 (279)
110 PRK03522 rumB 23S rRNA methylu 98.8 3.1E-08 6.7E-13 105.7 13.3 78 66-158 173-250 (315)
111 PRK08317 hypothetical protein; 98.8 5.8E-08 1.3E-12 98.8 14.8 106 64-186 17-122 (241)
112 TIGR00446 nop2p NOL1/NOP2/sun 98.8 4.5E-08 9.7E-13 101.7 13.4 110 64-186 69-197 (264)
113 PF03602 Cons_hypoth95: Conser 98.8 1.5E-08 3.2E-13 99.1 8.8 106 65-185 41-150 (183)
114 TIGR02072 BioC biotin biosynth 98.8 3.9E-08 8.3E-13 100.2 11.9 100 66-186 34-133 (240)
115 TIGR03840 TMPT_Se_Te thiopurin 98.8 4.9E-08 1.1E-12 97.9 12.3 103 65-185 33-149 (213)
116 TIGR02716 C20_methyl_CrtF C-20 98.8 4E-08 8.7E-13 104.5 12.3 107 65-188 148-254 (306)
117 COG0742 N6-adenine-specific me 98.8 4.7E-08 1E-12 94.1 11.5 111 66-189 43-155 (187)
118 PF10294 Methyltransf_16: Puta 98.8 2.1E-08 4.5E-13 97.4 9.2 107 63-183 42-151 (173)
119 PRK09328 N5-glutamine S-adenos 98.8 7.7E-08 1.7E-12 100.6 14.1 107 65-186 107-236 (275)
120 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 5.7E-08 1.2E-12 97.9 12.7 102 66-185 39-140 (223)
121 KOG1271 Methyltransferases [Ge 98.8 1.8E-08 3.9E-13 94.6 8.1 113 65-190 65-183 (227)
122 PLN02490 MPBQ/MSBQ methyltrans 98.8 3.3E-08 7.1E-13 105.3 11.3 101 65-185 112-212 (340)
123 COG2264 PrmA Ribosomal protein 98.8 1.6E-08 3.5E-13 104.5 8.7 109 394-523 153-262 (300)
124 PF01596 Methyltransf_3: O-met 98.8 3.5E-08 7.6E-13 98.0 10.7 121 54-190 34-157 (205)
125 COG4122 Predicted O-methyltran 98.8 6.5E-08 1.4E-12 96.1 12.5 124 53-193 47-171 (219)
126 TIGR03438 probable methyltrans 98.8 5.4E-08 1.2E-12 103.1 12.8 119 54-186 51-175 (301)
127 PLN02672 methionine S-methyltr 98.8 2.8E-08 6E-13 119.0 11.5 79 67-157 119-212 (1082)
128 PRK11188 rrmJ 23S rRNA methylt 98.8 5.3E-08 1.1E-12 97.5 11.5 101 64-186 49-163 (209)
129 TIGR02085 meth_trns_rumB 23S r 98.8 6.4E-08 1.4E-12 105.6 13.1 119 45-184 211-330 (374)
130 PTZ00146 fibrillarin; Provisio 98.8 7.2E-08 1.6E-12 99.7 12.6 106 64-186 130-235 (293)
131 PRK14121 tRNA (guanine-N(7)-)- 98.7 6.6E-08 1.4E-12 104.0 12.4 109 66-186 122-233 (390)
132 TIGR01983 UbiG ubiquinone bios 98.7 1.1E-07 2.4E-12 96.1 13.5 120 49-186 26-147 (224)
133 PRK14902 16S rRNA methyltransf 98.7 6.7E-08 1.5E-12 108.0 12.6 110 64-185 248-376 (444)
134 PRK00811 spermidine synthase; 98.7 8.5E-08 1.8E-12 100.6 12.5 113 66-190 76-193 (283)
135 PRK13168 rumA 23S rRNA m(5)U19 98.7 1.4E-07 3E-12 105.4 14.4 83 64-159 295-378 (443)
136 PF13489 Methyltransf_23: Meth 98.7 3.3E-08 7.2E-13 94.1 7.7 102 55-185 8-112 (161)
137 PRK14901 16S rRNA methyltransf 98.7 9.9E-08 2.2E-12 106.3 12.5 119 64-192 250-388 (434)
138 smart00650 rADc Ribosomal RNA 98.7 1.3E-07 2.7E-12 91.6 11.6 77 64-158 11-87 (169)
139 PLN02585 magnesium protoporphy 98.7 1.4E-07 3E-12 99.9 12.2 100 66-185 144-247 (315)
140 COG1092 Predicted SAM-dependen 98.7 7.5E-08 1.6E-12 103.9 10.3 126 57-194 209-342 (393)
141 PRK14903 16S rRNA methyltransf 98.7 1.3E-07 2.9E-12 104.8 12.5 116 64-191 235-369 (431)
142 TIGR00138 gidB 16S rRNA methyl 98.7 7.4E-08 1.6E-12 94.2 9.2 99 404-522 41-140 (181)
143 PRK07580 Mg-protoporphyrin IX 98.7 1.4E-07 2.9E-12 95.9 11.5 73 65-155 62-134 (230)
144 TIGR00479 rumA 23S rRNA (uraci 98.7 1.6E-07 3.4E-12 104.8 12.9 101 65-184 291-392 (431)
145 PRK14904 16S rRNA methyltransf 98.7 1.6E-07 3.5E-12 104.9 12.9 115 64-192 248-381 (445)
146 PRK05134 bifunctional 3-demeth 98.7 2.3E-07 5E-12 94.5 13.0 103 65-186 47-149 (233)
147 PRK11088 rrmA 23S rRNA methylt 98.7 1.4E-07 2.9E-12 98.7 11.5 94 66-185 85-178 (272)
148 PRK13255 thiopurine S-methyltr 98.7 1.8E-07 4E-12 94.1 12.0 102 65-184 36-151 (218)
149 PRK10901 16S rRNA methyltransf 98.6 1.5E-07 3.3E-12 104.6 11.9 116 64-192 242-376 (427)
150 PRK01581 speE spermidine synth 98.6 2.1E-07 4.6E-12 98.7 12.0 121 56-188 136-268 (374)
151 PRK11727 23S rRNA mA1618 methy 98.6 1.6E-07 3.4E-12 99.2 11.0 84 66-159 114-200 (321)
152 PF12847 Methyltransf_18: Meth 98.6 8.9E-08 1.9E-12 85.5 7.8 107 405-521 1-108 (112)
153 PF10672 Methyltrans_SAM: S-ad 98.6 1.1E-07 2.3E-12 98.9 9.3 113 65-189 122-239 (286)
154 TIGR03587 Pse_Me-ase pseudamin 98.6 3.2E-07 7E-12 91.4 12.5 74 64-157 41-114 (204)
155 cd02440 AdoMet_MTases S-adenos 98.6 2.4E-07 5.2E-12 80.0 10.2 103 69-187 1-103 (107)
156 KOG4300 Predicted methyltransf 98.6 2.1E-07 4.5E-12 89.4 10.1 101 68-185 78-179 (252)
157 TIGR00563 rsmB ribosomal RNA s 98.6 2.4E-07 5.3E-12 102.9 12.4 118 64-192 236-372 (426)
158 smart00138 MeTrc Methyltransfe 98.6 2.1E-07 4.6E-12 96.5 11.2 113 66-187 99-241 (264)
159 COG2520 Predicted methyltransf 98.6 1.8E-07 3.8E-12 98.9 10.5 107 58-185 180-286 (341)
160 PLN02589 caffeoyl-CoA O-methyl 98.6 2.9E-07 6.3E-12 93.9 11.2 114 66-194 79-196 (247)
161 PTZ00338 dimethyladenosine tra 98.6 2.4E-07 5.3E-12 97.2 10.9 79 64-159 34-112 (294)
162 COG4123 Predicted O-methyltran 98.6 1.9E-07 4.2E-12 94.1 9.4 83 405-491 44-128 (248)
163 PLN02366 spermidine synthase 98.6 6.3E-07 1.4E-11 94.6 13.4 128 55-194 76-212 (308)
164 COG4106 Tam Trans-aconitate me 98.6 1.7E-07 3.7E-12 90.7 8.0 111 51-184 14-125 (257)
165 PF08003 Methyltransf_9: Prote 98.6 8.1E-07 1.7E-11 91.4 13.3 103 66-187 115-218 (315)
166 PF05175 MTS: Methyltransferas 98.6 1.4E-07 3E-12 91.4 7.2 75 405-487 31-106 (170)
167 PRK05031 tRNA (uracil-5-)-meth 98.5 6.5E-07 1.4E-11 97.2 12.7 98 48-159 188-299 (362)
168 PRK03612 spermidine synthase; 98.5 3.8E-07 8.2E-12 103.7 11.3 114 65-190 296-417 (521)
169 PRK04338 N(2),N(2)-dimethylgua 98.5 4.9E-07 1.1E-11 98.4 11.7 100 67-187 58-157 (382)
170 PRK00107 gidB 16S rRNA methylt 98.5 4.6E-07 9.9E-12 88.9 10.4 98 405-522 45-143 (187)
171 KOG3191 Predicted N6-DNA-methy 98.5 9.4E-07 2E-11 83.3 11.8 76 67-157 44-119 (209)
172 TIGR00438 rrmJ cell division p 98.5 6.9E-07 1.5E-11 88.0 11.4 102 64-186 30-144 (188)
173 PRK14896 ksgA 16S ribosomal RN 98.5 4.6E-07 1E-11 93.8 10.6 76 64-159 27-102 (258)
174 PF13659 Methyltransf_26: Meth 98.5 2.1E-07 4.5E-12 83.9 6.8 107 406-520 1-111 (117)
175 PRK06202 hypothetical protein; 98.5 7.9E-07 1.7E-11 90.6 11.8 100 66-179 60-159 (232)
176 TIGR00406 prmA ribosomal prote 98.5 3.7E-07 8.1E-12 96.1 9.6 106 394-521 150-256 (288)
177 TIGR02143 trmA_only tRNA (urac 98.5 1.2E-06 2.6E-11 94.8 13.6 90 67-174 198-300 (353)
178 PF01170 UPF0020: Putative RNA 98.5 1.1E-06 2.3E-11 85.8 11.8 113 64-180 26-143 (179)
179 TIGR00417 speE spermidine synt 98.5 1.5E-06 3.3E-11 90.7 12.9 113 66-190 72-188 (270)
180 TIGR00095 RNA methyltransferas 98.4 1.3E-06 2.7E-11 86.1 10.5 105 405-521 49-156 (189)
181 COG2521 Predicted archaeal met 98.4 1.5E-07 3.3E-12 91.9 3.7 126 48-185 112-242 (287)
182 COG2265 TrmA SAM-dependent met 98.4 1.9E-06 4.1E-11 94.9 12.6 110 48-175 274-384 (432)
183 TIGR02081 metW methionine bios 98.4 1.5E-06 3.2E-11 86.1 10.6 77 59-156 6-83 (194)
184 PRK00274 ksgA 16S ribosomal RN 98.4 1.1E-06 2.3E-11 91.8 9.5 76 64-158 40-115 (272)
185 PRK00517 prmA ribosomal protei 98.3 1.4E-06 2.9E-11 90.0 8.9 91 405-521 119-210 (250)
186 COG2227 UbiG 2-polyprenyl-3-me 98.3 1.4E-06 2.9E-11 86.7 8.4 104 404-526 58-163 (243)
187 COG2230 Cfa Cyclopropane fatty 98.3 2.1E-06 4.5E-11 88.3 9.8 112 396-523 63-175 (283)
188 PRK10909 rsmD 16S rRNA m(2)G96 98.3 2.8E-06 6.1E-11 84.1 10.2 76 405-487 53-129 (199)
189 PRK00377 cbiT cobalt-precorrin 98.3 2.5E-06 5.4E-11 84.8 9.5 105 401-521 36-142 (198)
190 PRK13256 thiopurine S-methyltr 98.3 3E-06 6.6E-11 85.1 10.0 108 65-185 42-160 (226)
191 PF07021 MetW: Methionine bios 98.3 2.3E-06 5E-11 82.6 8.7 77 58-154 5-81 (193)
192 PF02353 CMAS: Mycolic acid cy 98.3 2.3E-06 4.9E-11 89.1 9.3 103 403-522 60-164 (273)
193 PLN02823 spermine synthase 98.3 5.2E-06 1.1E-10 88.6 12.1 121 55-187 88-219 (336)
194 TIGR00477 tehB tellurite resis 98.3 2.4E-06 5.1E-11 84.7 8.8 111 394-521 19-130 (195)
195 PF09445 Methyltransf_15: RNA 98.3 1.7E-06 3.6E-11 82.2 7.3 77 68-156 1-77 (163)
196 TIGR00308 TRM1 tRNA(guanine-26 98.3 4.7E-06 1E-10 90.3 11.7 100 68-186 46-145 (374)
197 PF02527 GidB: rRNA small subu 98.3 4.4E-06 9.5E-11 81.5 9.7 102 69-192 51-152 (184)
198 PRK11207 tellurite resistance 98.2 6.2E-06 1.3E-10 81.9 10.4 108 397-520 22-130 (197)
199 PLN02396 hexaprenyldihydroxybe 98.2 5.1E-06 1.1E-10 88.3 10.4 101 404-521 130-232 (322)
200 KOG3010 Methyltransferase [Gen 98.2 1.9E-06 4.1E-11 85.1 6.3 98 68-184 35-133 (261)
201 PF13847 Methyltransf_31: Meth 98.2 4.6E-06 1E-10 79.1 8.8 108 405-526 3-112 (152)
202 COG3897 Predicted methyltransf 98.2 3.2E-06 7E-11 80.9 7.2 97 66-185 79-176 (218)
203 KOG0820 Ribosomal RNA adenine 98.2 4.6E-06 9.9E-11 83.6 8.5 79 63-158 55-133 (315)
204 PF05958 tRNA_U5-meth_tr: tRNA 98.2 3.4E-06 7.3E-11 91.3 8.3 104 45-161 175-291 (352)
205 COG2263 Predicted RNA methylas 98.2 7.5E-06 1.6E-10 78.3 9.5 84 392-487 32-116 (198)
206 TIGR02469 CbiT precorrin-6Y C5 98.2 1.1E-05 2.5E-10 73.0 10.5 103 404-523 18-121 (124)
207 PRK08287 cobalt-precorrin-6Y C 98.2 7.5E-06 1.6E-10 80.5 9.8 75 404-487 30-105 (187)
208 KOG1663 O-methyltransferase [S 98.2 1.5E-05 3.2E-10 78.6 11.5 118 66-199 73-193 (237)
209 PRK13944 protein-L-isoaspartat 98.2 1.4E-05 3E-10 79.9 11.5 83 399-487 66-150 (205)
210 TIGR02752 MenG_heptapren 2-hep 98.2 1.1E-05 2.4E-10 82.1 11.1 117 390-521 30-148 (231)
211 PF02390 Methyltransf_4: Putat 98.2 7E-06 1.5E-10 81.2 9.1 106 68-184 19-129 (195)
212 COG0030 KsgA Dimethyladenosine 98.2 9.4E-06 2E-10 82.7 9.9 79 64-159 28-106 (259)
213 TIGR00755 ksgA dimethyladenosi 98.2 8.2E-06 1.8E-10 84.3 9.8 75 64-158 27-104 (253)
214 KOG2899 Predicted methyltransf 98.1 7.4E-06 1.6E-10 80.8 8.6 55 57-121 49-103 (288)
215 PF02475 Met_10: Met-10+ like- 98.1 7.1E-06 1.5E-10 81.0 8.5 75 405-486 101-176 (200)
216 COG4976 Predicted methyltransf 98.1 1.1E-06 2.4E-11 85.7 2.6 98 68-187 127-224 (287)
217 PRK11036 putative S-adenosyl-L 98.1 1.3E-05 2.8E-10 83.0 10.4 102 405-521 44-146 (255)
218 TIGR00080 pimt protein-L-isoas 98.1 1.4E-05 3.1E-10 80.4 10.4 80 401-487 73-154 (215)
219 PRK15001 SAM-dependent 23S rib 98.1 1.8E-05 3.9E-10 85.8 11.7 105 406-520 229-336 (378)
220 TIGR00452 methyltransferase, p 98.1 1.6E-05 3.5E-10 84.2 10.9 117 386-521 101-222 (314)
221 COG2242 CobL Precorrin-6B meth 98.1 1.6E-05 3.4E-10 76.4 9.8 110 396-524 25-135 (187)
222 PF05724 TPMT: Thiopurine S-me 98.1 5.4E-06 1.2E-10 83.3 6.8 107 64-185 35-152 (218)
223 COG2813 RsmC 16S RNA G1207 met 98.1 2.1E-05 4.7E-10 81.1 11.1 114 395-520 148-262 (300)
224 PF03291 Pox_MCEL: mRNA cappin 98.1 9.6E-06 2.1E-10 86.5 8.9 131 43-185 37-183 (331)
225 PRK15128 23S rRNA m(5)C1962 me 98.1 9.8E-06 2.1E-10 88.7 9.1 114 405-524 220-339 (396)
226 KOG3420 Predicted RNA methylas 98.1 3.1E-06 6.7E-11 76.8 4.2 75 66-156 48-122 (185)
227 PRK13942 protein-L-isoaspartat 98.1 2.4E-05 5.2E-10 78.6 11.0 79 402-487 73-153 (212)
228 COG2519 GCD14 tRNA(1-methylade 98.1 1.2E-05 2.6E-10 80.6 8.5 104 397-520 86-191 (256)
229 TIGR00478 tly hemolysin TlyA f 98.1 1.3E-05 2.8E-10 80.9 8.7 50 55-115 62-113 (228)
230 PRK15068 tRNA mo(5)U34 methylt 98.1 1.8E-05 3.8E-10 84.6 10.3 109 397-521 114-223 (322)
231 PF10294 Methyltransf_16: Puta 98.1 8.6E-06 1.9E-10 79.1 6.9 106 401-519 41-151 (173)
232 PRK11873 arsM arsenite S-adeno 98.0 1.6E-05 3.5E-10 83.1 9.2 104 404-522 76-181 (272)
233 COG0357 GidB Predicted S-adeno 98.0 2.5E-05 5.5E-10 77.5 9.7 97 67-185 68-165 (215)
234 TIGR00536 hemK_fam HemK family 98.0 4.2E-05 9.1E-10 80.4 11.9 74 407-487 116-190 (284)
235 PRK12335 tellurite resistance 98.0 2.3E-05 5.1E-10 82.5 9.9 99 405-520 120-219 (287)
236 PRK07402 precorrin-6B methylas 98.0 3E-05 6.4E-10 76.9 9.9 70 396-469 31-101 (196)
237 COG1041 Predicted DNA modifica 98.0 3.1E-05 6.7E-10 81.5 10.3 106 64-185 195-307 (347)
238 TIGR03533 L3_gln_methyl protei 98.0 4.3E-05 9.3E-10 80.3 11.4 76 405-487 121-197 (284)
239 COG0116 Predicted N6-adenine-s 98.0 7.6E-05 1.7E-09 79.6 13.2 126 54-183 177-339 (381)
240 KOG2915 tRNA(1-methyladenosine 98.0 5.6E-05 1.2E-09 75.9 11.4 102 64-183 103-204 (314)
241 TIGR00537 hemK_rel_arch HemK-r 98.0 3.2E-05 7E-10 75.5 9.6 75 403-489 17-92 (179)
242 PRK14967 putative methyltransf 98.0 4E-05 8.6E-10 77.7 10.4 76 405-490 36-113 (223)
243 PF03848 TehB: Tellurite resis 98.0 2.3E-05 5E-10 76.7 8.0 110 393-519 18-128 (192)
244 PRK11933 yebU rRNA (cytosine-C 98.0 5E-05 1.1E-09 84.7 11.7 117 64-192 111-246 (470)
245 KOG1541 Predicted protein carb 98.0 3.9E-05 8.5E-10 74.7 9.4 111 56-187 37-159 (270)
246 PF05971 Methyltransf_10: Prot 97.9 6E-05 1.3E-09 78.4 11.2 83 67-160 103-189 (299)
247 KOG2187 tRNA uracil-5-methyltr 97.9 3.6E-05 7.7E-10 83.9 9.8 106 53-177 368-479 (534)
248 PF01564 Spermine_synth: Sperm 97.9 2.7E-05 5.9E-10 79.9 8.6 122 55-188 61-191 (246)
249 PRK11805 N5-glutamine S-adenos 97.9 5.3E-05 1.1E-09 80.4 10.9 74 407-487 135-209 (307)
250 PLN02244 tocopherol O-methyltr 97.9 7E-05 1.5E-09 80.8 11.7 102 405-521 118-220 (340)
251 COG0220 Predicted S-adenosylme 97.9 6.4E-05 1.4E-09 75.7 10.5 106 68-185 50-161 (227)
252 PLN02781 Probable caffeoyl-CoA 97.9 4.5E-05 9.8E-10 77.8 9.1 113 393-524 59-178 (234)
253 KOG1661 Protein-L-isoaspartate 97.9 0.00011 2.5E-09 71.1 11.2 87 57-154 73-168 (237)
254 PLN02233 ubiquinone biosynthes 97.9 0.00013 2.8E-09 75.7 12.4 89 392-486 60-152 (261)
255 PF08123 DOT1: Histone methyla 97.9 7.1E-05 1.5E-09 74.4 9.8 108 64-185 40-155 (205)
256 COG0421 SpeE Spermidine syntha 97.9 5.4E-05 1.2E-09 78.8 9.0 116 68-195 78-197 (282)
257 KOG1975 mRNA cap methyltransfe 97.8 4.3E-05 9.3E-10 78.5 7.9 113 62-185 113-234 (389)
258 PRK04148 hypothetical protein; 97.8 0.00013 2.8E-09 66.9 10.2 83 66-175 16-99 (134)
259 COG2518 Pcm Protein-L-isoaspar 97.8 0.00011 2.3E-09 72.4 10.2 104 398-524 65-170 (209)
260 PF00891 Methyltransf_2: O-met 97.8 0.00013 2.9E-09 74.7 11.6 96 66-186 100-197 (241)
261 PRK00050 16S rRNA m(4)C1402 me 97.8 5.2E-05 1.1E-09 79.3 8.6 78 64-155 17-97 (296)
262 PRK04266 fibrillarin; Provisio 97.8 8.8E-05 1.9E-09 75.1 10.0 104 401-521 68-173 (226)
263 PRK04457 spermidine synthase; 97.8 0.00011 2.4E-09 76.1 10.8 120 392-521 52-174 (262)
264 PF08704 GCD14: tRNA methyltra 97.8 0.00011 2.4E-09 75.0 10.5 107 397-520 32-142 (247)
265 PRK01544 bifunctional N5-gluta 97.8 0.00012 2.6E-09 83.0 11.7 75 406-487 139-214 (506)
266 KOG2361 Predicted methyltransf 97.8 3.5E-05 7.6E-10 76.3 6.3 114 69-193 74-188 (264)
267 TIGR01444 fkbM_fam methyltrans 97.8 6.5E-05 1.4E-09 70.2 7.6 59 69-138 1-59 (143)
268 PF08003 Methyltransf_9: Prote 97.8 0.00013 2.8E-09 75.4 10.0 130 385-531 94-232 (315)
269 TIGR00479 rumA 23S rRNA (uraci 97.8 0.00011 2.5E-09 81.9 10.4 91 394-490 281-373 (431)
270 PRK09489 rsmC 16S ribosomal RN 97.8 0.00015 3.3E-09 78.0 10.9 71 407-487 198-269 (342)
271 PRK14966 unknown domain/N5-glu 97.8 0.00018 3.8E-09 78.4 11.4 89 390-487 238-327 (423)
272 PF01209 Ubie_methyltran: ubiE 97.7 7.1E-05 1.5E-09 76.2 7.5 113 393-520 35-149 (233)
273 PRK11727 23S rRNA mA1618 methy 97.7 7.9E-05 1.7E-09 79.0 8.0 82 406-491 115-202 (321)
274 smart00828 PKS_MT Methyltransf 97.7 0.00011 2.4E-09 74.3 8.8 100 407-521 1-101 (224)
275 PRK00216 ubiE ubiquinone/menaq 97.7 0.00027 5.8E-09 71.9 11.4 78 403-486 49-128 (239)
276 PRK00312 pcm protein-L-isoaspa 97.7 0.00025 5.5E-09 71.1 11.0 78 401-487 74-152 (212)
277 PF04816 DUF633: Family of unk 97.7 0.00023 5.1E-09 70.7 10.5 104 70-199 1-105 (205)
278 TIGR02085 meth_trns_rumB 23S r 97.7 0.00016 3.5E-09 79.0 10.2 108 374-490 203-311 (374)
279 PF05219 DREV: DREV methyltran 97.7 0.00018 3.9E-09 72.7 9.6 104 67-199 95-199 (265)
280 KOG1270 Methyltransferases [Co 97.7 6.6E-05 1.4E-09 75.4 6.4 99 375-485 61-164 (282)
281 PHA03412 putative methyltransf 97.7 0.00015 3.2E-09 72.9 8.9 105 406-524 50-163 (241)
282 PF03602 Cons_hypoth95: Conser 97.7 5.7E-05 1.2E-09 73.9 5.9 118 391-521 26-150 (183)
283 TIGR03534 RF_mod_PrmC protein- 97.7 0.00031 6.6E-09 72.2 11.6 75 405-487 87-162 (251)
284 PRK00121 trmB tRNA (guanine-N( 97.7 0.00013 2.8E-09 72.7 8.5 76 406-486 41-118 (202)
285 PF12147 Methyltransf_20: Puta 97.7 0.00062 1.3E-08 69.7 13.3 109 67-185 136-246 (311)
286 TIGR01177 conserved hypothetic 97.7 0.00028 6.2E-09 75.8 11.5 85 396-489 173-258 (329)
287 PF00398 RrnaAD: Ribosomal RNA 97.7 0.00022 4.8E-09 74.0 10.2 80 64-158 28-107 (262)
288 COG3963 Phospholipid N-methylt 97.7 0.00025 5.4E-09 66.4 9.2 104 66-185 48-153 (194)
289 PRK09328 N5-glutamine S-adenos 97.7 0.00024 5.1E-09 74.3 10.4 89 391-487 94-183 (275)
290 PRK10742 putative methyltransf 97.7 0.00034 7.4E-09 70.7 10.9 83 65-161 85-177 (250)
291 PRK15451 tRNA cmo(5)U34 methyl 97.6 0.00018 3.9E-09 74.0 9.1 74 405-486 56-132 (247)
292 PHA03411 putative methyltransf 97.6 0.00033 7.1E-09 72.1 10.5 115 406-538 65-189 (279)
293 smart00650 rADc Ribosomal RNA 97.6 0.00037 8.1E-09 67.3 10.5 79 398-487 6-85 (169)
294 KOG2904 Predicted methyltransf 97.6 0.00026 5.6E-09 71.3 9.4 80 404-487 147-230 (328)
295 PRK03522 rumB 23S rRNA methylu 97.6 0.0002 4.3E-09 76.5 9.0 77 404-488 172-249 (315)
296 PF06080 DUF938: Protein of un 97.6 0.00042 9.2E-09 68.1 10.4 120 55-185 13-138 (204)
297 PF01135 PCMT: Protein-L-isoas 97.6 0.00029 6.2E-09 70.4 9.5 84 397-487 64-149 (209)
298 PRK14902 16S rRNA methyltransf 97.6 0.00041 8.9E-09 77.7 11.8 90 400-496 245-336 (444)
299 PRK13943 protein-L-isoaspartat 97.6 0.00051 1.1E-08 73.2 11.7 79 401-486 76-156 (322)
300 PRK14968 putative methyltransf 97.6 0.00024 5.2E-09 69.5 8.7 74 405-487 23-98 (188)
301 TIGR03704 PrmC_rel_meth putati 97.6 0.00036 7.8E-09 71.9 10.2 75 407-489 88-164 (251)
302 PRK00536 speE spermidine synth 97.6 0.00051 1.1E-08 70.7 11.1 116 54-195 56-178 (262)
303 COG2226 UbiE Methylase involve 97.6 0.00056 1.2E-08 69.2 11.2 88 391-485 37-125 (238)
304 PRK13168 rumA 23S rRNA m(5)U19 97.6 0.00018 3.9E-09 80.6 8.5 95 390-490 282-378 (443)
305 COG1092 Predicted SAM-dependen 97.6 0.00021 4.6E-09 77.4 8.5 126 394-526 209-338 (393)
306 PF08241 Methyltransf_11: Meth 97.6 0.00017 3.7E-09 61.6 6.3 93 410-521 1-94 (95)
307 PF05401 NodS: Nodulation prot 97.6 0.0002 4.4E-09 69.5 7.2 114 393-525 31-147 (201)
308 PLN02476 O-methyltransferase 97.6 0.00044 9.5E-09 71.7 10.3 115 393-525 109-229 (278)
309 KOG3201 Uncharacterized conser 97.5 3E-05 6.5E-10 71.8 1.4 111 66-190 29-145 (201)
310 PTZ00098 phosphoethanolamine N 97.5 0.00049 1.1E-08 71.5 10.4 113 392-521 40-153 (263)
311 PLN02232 ubiquinone biosynthes 97.5 0.00027 5.8E-09 67.7 7.7 76 104-185 1-78 (160)
312 PF13679 Methyltransf_32: Meth 97.5 0.00067 1.5E-08 63.5 10.2 80 65-154 24-105 (141)
313 COG2384 Predicted SAM-dependen 97.5 0.00043 9.4E-09 68.0 9.0 117 58-199 8-124 (226)
314 PF01269 Fibrillarin: Fibrilla 97.5 0.0012 2.7E-08 65.2 12.1 105 64-185 71-175 (229)
315 COG0742 N6-adenine-specific me 97.5 0.00091 2E-08 64.8 11.0 127 390-526 26-156 (187)
316 COG2521 Predicted archaeal met 97.5 9.8E-05 2.1E-09 72.6 4.2 122 387-522 114-243 (287)
317 PRK04338 N(2),N(2)-dimethylgua 97.5 0.00036 7.8E-09 76.1 9.0 76 406-488 58-134 (382)
318 PTZ00338 dimethyladenosine tra 97.5 0.00042 9.2E-09 72.9 9.1 85 396-490 27-113 (294)
319 TIGR01934 MenG_MenH_UbiE ubiqu 97.5 0.00096 2.1E-08 67.0 11.5 113 392-521 26-140 (223)
320 COG2890 HemK Methylase of poly 97.5 0.00051 1.1E-08 71.9 9.5 74 408-490 113-187 (280)
321 PRK00811 spermidine synthase; 97.5 0.0006 1.3E-08 71.6 10.1 106 405-521 76-188 (283)
322 TIGR00091 tRNA (guanine-N(7)-) 97.5 0.00039 8.6E-09 68.8 8.2 77 406-486 17-94 (194)
323 PRK01683 trans-aconitate 2-met 97.5 0.00073 1.6E-08 69.9 10.6 104 397-521 23-127 (258)
324 PTZ00146 fibrillarin; Provisio 97.4 0.00044 9.5E-09 71.9 8.5 114 391-521 115-234 (293)
325 TIGR00446 nop2p NOL1/NOP2/sun 97.4 0.00085 1.9E-08 69.8 10.6 86 403-496 69-156 (264)
326 PF05891 Methyltransf_PK: AdoM 97.4 0.00016 3.4E-09 71.5 4.5 103 67-185 56-158 (218)
327 PRK11705 cyclopropane fatty ac 97.4 0.00099 2.1E-08 73.0 11.3 103 399-521 161-264 (383)
328 PRK14896 ksgA 16S ribosomal RN 97.4 0.00073 1.6E-08 70.0 9.7 84 394-490 18-103 (258)
329 PRK11188 rrmJ 23S rRNA methylt 97.4 0.00085 1.8E-08 67.2 9.7 69 404-487 50-125 (209)
330 PRK08317 hypothetical protein; 97.4 0.0015 3.2E-08 66.3 11.7 116 390-521 4-121 (241)
331 TIGR00740 methyltransferase, p 97.4 0.00086 1.9E-08 68.6 9.6 105 405-523 53-160 (239)
332 COG1189 Predicted rRNA methyla 97.3 0.0011 2.4E-08 66.0 9.7 106 56-185 67-175 (245)
333 TIGR02021 BchM-ChlM magnesium 97.3 0.0011 2.3E-08 66.9 10.0 73 403-486 53-126 (219)
334 PRK14103 trans-aconitate 2-met 97.3 0.0011 2.3E-08 68.6 10.0 102 397-521 21-123 (255)
335 COG3897 Predicted methyltransf 97.3 0.00026 5.5E-09 68.1 4.7 82 397-490 71-154 (218)
336 TIGR01983 UbiG ubiquinone bios 97.3 0.0015 3.2E-08 66.0 10.4 93 386-486 26-119 (224)
337 PRK14901 16S rRNA methyltransf 97.3 0.0011 2.4E-08 74.0 10.2 89 403-496 250-341 (434)
338 PRK10901 16S rRNA methyltransf 97.3 0.0016 3.4E-08 72.7 11.3 81 404-490 243-324 (427)
339 TIGR00563 rsmB ribosomal RNA s 97.3 0.0014 3E-08 73.1 10.6 119 403-527 236-371 (426)
340 PRK11760 putative 23S rRNA C24 97.3 0.0016 3.5E-08 68.7 10.3 88 64-181 209-296 (357)
341 KOG1271 Methyltransferases [Ge 97.3 0.00077 1.7E-08 64.0 7.1 108 408-523 70-180 (227)
342 PRK10611 chemotaxis methyltran 97.3 0.0011 2.4E-08 69.3 9.1 112 68-188 117-262 (287)
343 TIGR02716 C20_methyl_CrtF C-20 97.2 0.0025 5.5E-08 67.7 11.8 83 394-485 138-221 (306)
344 KOG1227 Putative methyltransfe 97.2 0.00042 9.2E-09 70.6 5.4 121 9-154 147-268 (351)
345 PRK01581 speE spermidine synth 97.2 0.002 4.3E-08 69.0 10.5 119 393-521 136-265 (374)
346 PF01596 Methyltransf_3: O-met 97.2 0.00057 1.2E-08 68.0 6.1 90 390-486 33-128 (205)
347 PLN02672 methionine S-methyltr 97.2 0.0011 2.4E-08 80.3 9.6 80 404-487 117-211 (1082)
348 cd02440 AdoMet_MTases S-adenos 97.2 0.0013 2.8E-08 56.2 7.6 102 408-523 1-103 (107)
349 PRK05134 bifunctional 3-demeth 97.2 0.0023 4.9E-08 65.1 10.5 109 396-521 39-148 (233)
350 PLN02490 MPBQ/MSBQ methyltrans 97.2 0.0016 3.4E-08 69.8 9.4 99 405-521 113-212 (340)
351 PLN03075 nicotianamine synthas 97.2 0.0026 5.7E-08 66.4 10.8 105 405-522 123-231 (296)
352 PRK14904 16S rRNA methyltransf 97.2 0.0023 5E-08 71.7 11.2 81 403-491 248-330 (445)
353 PRK00274 ksgA 16S ribosomal RN 97.2 0.0014 3E-08 68.5 8.7 81 398-490 35-117 (272)
354 PF13578 Methyltransf_24: Meth 97.2 8.6E-05 1.9E-09 65.7 -0.3 103 71-187 1-104 (106)
355 PRK05031 tRNA (uracil-5-)-meth 97.2 0.00098 2.1E-08 72.5 7.8 101 381-490 184-299 (362)
356 COG4262 Predicted spermidine s 97.1 0.0018 4E-08 67.7 8.9 119 66-196 289-415 (508)
357 PF01728 FtsJ: FtsJ-like methy 97.1 0.0002 4.3E-09 70.0 1.9 69 67-156 24-99 (181)
358 PRK13255 thiopurine S-methyltr 97.1 0.0023 5.1E-08 64.4 9.6 100 405-519 37-150 (218)
359 PRK06922 hypothetical protein; 97.1 0.0024 5.1E-08 73.0 10.6 76 405-487 418-495 (677)
360 TIGR00438 rrmJ cell division p 97.1 0.0015 3.2E-08 64.3 7.8 69 404-487 31-106 (188)
361 PHA01634 hypothetical protein 97.1 0.0031 6.8E-08 56.3 8.8 73 65-155 27-99 (156)
362 PF05971 Methyltransf_10: Prot 97.1 0.0011 2.4E-08 69.1 7.1 85 407-495 104-194 (299)
363 TIGR02987 met_A_Alw26 type II 97.1 0.0027 5.9E-08 72.7 10.9 92 66-160 31-124 (524)
364 COG0293 FtsJ 23S rRNA methylas 97.1 0.0016 3.4E-08 64.1 7.6 102 63-185 42-156 (205)
365 COG1189 Predicted rRNA methyla 97.1 0.0015 3.3E-08 65.1 7.5 88 392-491 66-156 (245)
366 PF03059 NAS: Nicotianamine sy 97.1 0.0042 9E-08 64.3 10.9 104 68-187 122-229 (276)
367 COG0144 Sun tRNA and rRNA cyto 97.1 0.0086 1.9E-07 64.9 14.0 126 63-199 153-297 (355)
368 PLN02366 spermidine synthase 97.0 0.0038 8.2E-08 66.2 10.6 127 392-528 76-210 (308)
369 PF07942 N2227: N2227-like pro 97.0 0.0067 1.5E-07 62.6 12.0 124 47-185 28-199 (270)
370 PF01739 CheR: CheR methyltran 97.0 0.0015 3.3E-08 64.5 6.9 114 67-189 32-176 (196)
371 PRK03612 spermidine synthase; 97.0 0.0029 6.4E-08 72.2 10.2 110 405-524 297-415 (521)
372 PRK10258 biotin biosynthesis p 97.0 0.0035 7.7E-08 64.5 9.7 94 405-521 42-137 (251)
373 TIGR00478 tly hemolysin TlyA f 97.0 0.0022 4.7E-08 64.9 7.7 45 392-437 62-107 (228)
374 COG2520 Predicted methyltransf 96.9 0.0028 6.1E-08 67.4 8.6 75 405-486 188-263 (341)
375 PF02005 TRM: N2,N2-dimethylgu 96.9 0.0029 6.3E-08 68.9 8.9 102 66-185 49-151 (377)
376 TIGR02072 BioC biotin biosynth 96.9 0.0057 1.2E-07 62.0 10.5 98 405-521 34-132 (240)
377 KOG2730 Methylase [General fun 96.9 0.00093 2E-08 65.3 4.3 63 66-140 94-156 (263)
378 PRK14903 16S rRNA methyltransf 96.9 0.005 1.1E-07 68.6 10.5 116 403-526 235-368 (431)
379 KOG1709 Guanidinoacetate methy 96.9 0.0056 1.2E-07 59.8 9.1 103 65-186 100-204 (271)
380 PF13489 Methyltransf_23: Meth 96.9 0.0031 6.7E-08 59.7 7.4 50 389-442 5-56 (161)
381 COG1352 CheR Methylase of chem 96.8 0.0095 2.1E-07 61.6 11.1 111 67-188 97-241 (268)
382 PF02384 N6_Mtase: N-6 DNA Met 96.8 0.004 8.6E-08 66.4 8.6 91 65-159 45-136 (311)
383 PRK14121 tRNA (guanine-N(7)-)- 96.8 0.0068 1.5E-07 65.8 10.3 76 405-485 122-198 (390)
384 TIGR03840 TMPT_Se_Te thiopurin 96.8 0.0059 1.3E-07 61.3 9.3 100 405-519 34-147 (213)
385 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.8 0.0095 2.1E-07 62.5 11.1 119 63-192 82-223 (283)
386 PLN02823 spermine synthase 96.8 0.0081 1.8E-07 64.4 10.5 121 393-521 89-217 (336)
387 TIGR01444 fkbM_fam methyltrans 96.8 0.003 6.5E-08 58.8 6.5 55 408-466 1-56 (143)
388 PF10672 Methyltrans_SAM: S-ad 96.8 0.0025 5.5E-08 66.5 6.5 86 395-487 116-203 (286)
389 COG2265 TrmA SAM-dependent met 96.8 0.0048 1E-07 68.3 9.0 92 390-487 278-370 (432)
390 PRK07580 Mg-protoporphyrin IX 96.8 0.0071 1.5E-07 61.2 9.6 72 404-486 62-134 (230)
391 PF06962 rRNA_methylase: Putat 96.7 0.0054 1.2E-07 56.7 7.7 79 102-185 1-89 (140)
392 KOG4058 Uncharacterized conser 96.7 0.0036 7.8E-08 57.3 6.2 99 67-187 73-171 (199)
393 TIGR00417 speE spermidine synt 96.7 0.01 2.2E-07 61.9 10.6 121 392-523 57-185 (270)
394 PLN02589 caffeoyl-CoA O-methyl 96.7 0.0077 1.7E-07 61.7 9.0 104 405-523 79-189 (247)
395 COG4122 Predicted O-methyltran 96.7 0.0095 2.1E-07 59.5 9.3 121 390-528 47-170 (219)
396 TIGR02143 trmA_only tRNA (urac 96.6 0.005 1.1E-07 66.7 8.0 82 407-497 199-294 (353)
397 KOG2940 Predicted methyltransf 96.6 0.0018 4E-08 63.5 4.0 99 67-185 73-171 (325)
398 COG1889 NOP1 Fibrillarin-like 96.6 0.02 4.4E-07 55.6 10.7 104 64-185 74-177 (231)
399 PF05958 tRNA_U5-meth_tr: tRNA 96.6 0.0049 1.1E-07 66.8 7.4 97 383-487 176-286 (352)
400 PF09243 Rsm22: Mitochondrial 96.6 0.012 2.7E-07 61.4 9.9 49 66-123 33-81 (274)
401 PF02527 GidB: rRNA small subu 96.5 0.0081 1.8E-07 58.7 7.7 99 408-526 51-150 (184)
402 TIGR03439 methyl_EasF probable 96.5 0.03 6.4E-07 59.6 12.5 124 54-186 64-195 (319)
403 KOG3191 Predicted N6-DNA-methy 96.5 0.023 4.9E-07 54.3 10.1 120 406-534 44-171 (209)
404 KOG2793 Putative N2,N2-dimethy 96.5 0.017 3.7E-07 58.7 9.9 117 67-204 87-209 (248)
405 PRK11088 rrmA 23S rRNA methylt 96.5 0.013 2.8E-07 61.2 9.4 90 405-521 85-178 (272)
406 TIGR00308 TRM1 tRNA(guanine-26 96.4 0.0083 1.8E-07 65.3 7.9 77 407-489 46-124 (374)
407 PF01861 DUF43: Protein of unk 96.4 0.029 6.3E-07 56.4 11.0 99 66-182 44-142 (243)
408 PF13649 Methyltransf_25: Meth 96.4 0.0052 1.1E-07 53.7 5.1 69 409-485 1-73 (101)
409 COG0030 KsgA Dimethyladenosine 96.4 0.016 3.4E-07 59.4 9.0 88 394-491 19-108 (259)
410 PF05148 Methyltransf_8: Hypot 96.3 0.01 2.2E-07 58.4 7.1 83 67-185 73-155 (219)
411 PHA01634 hypothetical protein 96.3 0.0072 1.6E-07 54.1 5.4 57 404-464 27-84 (156)
412 KOG4589 Cell division protein 96.3 0.0075 1.6E-07 57.7 5.8 75 63-158 66-146 (232)
413 KOG4300 Predicted methyltransf 96.3 0.011 2.4E-07 57.5 7.0 116 390-521 57-179 (252)
414 PRK10742 putative methyltransf 96.2 0.015 3.2E-07 59.1 7.7 88 396-490 77-175 (250)
415 KOG1663 O-methyltransferase [S 96.2 0.0077 1.7E-07 59.8 5.6 117 403-535 71-193 (237)
416 PRK06202 hypothetical protein; 96.2 0.017 3.7E-07 58.7 8.3 86 392-487 47-137 (232)
417 TIGR03587 Pse_Me-ase pseudamin 96.2 0.023 5E-07 56.6 8.9 70 405-487 43-113 (204)
418 PF04816 DUF633: Family of unk 96.2 0.014 2.9E-07 58.2 7.1 72 409-487 1-74 (205)
419 TIGR00755 ksgA dimethyladenosi 96.1 0.024 5.3E-07 58.5 9.3 82 396-487 20-102 (253)
420 PLN02585 magnesium protoporphy 96.1 0.024 5.2E-07 60.3 9.3 72 405-486 144-219 (315)
421 COG0500 SmtA SAM-dependent met 96.1 0.072 1.6E-06 48.7 11.4 102 70-188 52-155 (257)
422 COG1867 TRM1 N2,N2-dimethylgua 96.0 0.033 7.2E-07 59.1 9.5 99 67-185 53-151 (380)
423 KOG2187 tRNA uracil-5-methyltr 96.0 0.015 3.2E-07 64.1 7.0 92 390-487 368-463 (534)
424 TIGR00006 S-adenosyl-methyltra 95.9 0.049 1.1E-06 57.3 10.0 80 64-155 18-99 (305)
425 PF07021 MetW: Methionine bios 95.8 0.02 4.3E-07 55.8 6.4 75 395-485 5-81 (193)
426 PF08242 Methyltransf_12: Meth 95.8 0.003 6.6E-08 54.8 0.7 97 410-520 1-99 (99)
427 KOG0820 Ribosomal RNA adenine 95.7 0.053 1.1E-06 55.1 8.8 83 396-488 49-133 (315)
428 PF04989 CmcI: Cephalosporin h 95.7 0.06 1.3E-06 53.2 9.1 126 46-185 14-144 (206)
429 PRK05785 hypothetical protein; 95.6 0.081 1.7E-06 53.7 10.4 65 406-486 52-117 (226)
430 PF04445 SAM_MT: Putative SAM- 95.6 0.021 4.6E-07 57.5 5.9 79 68-160 77-163 (234)
431 PF00398 RrnaAD: Ribosomal RNA 95.6 0.056 1.2E-06 56.1 9.3 91 392-490 17-109 (262)
432 PF13679 Methyltransf_32: Meth 95.6 0.043 9.3E-07 51.3 7.4 74 404-485 24-105 (141)
433 KOG1540 Ubiquinone biosynthesi 95.5 0.17 3.7E-06 51.1 11.4 108 401-521 96-211 (296)
434 KOG3045 Predicted RNA methylas 95.4 0.06 1.3E-06 54.2 8.2 88 67-199 181-268 (325)
435 PF05724 TPMT: Thiopurine S-me 95.3 0.066 1.4E-06 53.9 8.1 101 404-519 36-150 (218)
436 KOG2920 Predicted methyltransf 95.2 0.028 6E-07 57.8 5.2 42 61-113 111-152 (282)
437 PF01170 UPF0020: Putative RNA 95.2 0.098 2.1E-06 51.0 9.0 92 392-489 15-117 (179)
438 PF07091 FmrO: Ribosomal RNA m 95.1 0.063 1.4E-06 54.4 7.4 82 57-154 96-177 (251)
439 PF03141 Methyltransf_29: Puta 95.1 0.022 4.8E-07 62.8 4.3 116 53-192 98-223 (506)
440 COG1041 Predicted DNA modifica 95.0 0.11 2.5E-06 55.0 9.4 88 393-490 185-275 (347)
441 COG0357 GidB Predicted S-adeno 95.0 0.091 2E-06 52.5 8.1 72 406-487 68-143 (215)
442 PF01564 Spermine_synth: Sperm 95.0 0.087 1.9E-06 54.1 8.3 121 392-522 61-189 (246)
443 KOG1122 tRNA and rRNA cytosine 95.0 0.22 4.8E-06 53.7 11.3 123 64-199 239-380 (460)
444 PRK13256 thiopurine S-methyltr 94.9 0.13 2.8E-06 51.9 9.1 103 405-520 43-159 (226)
445 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.7 0.039 8.5E-07 56.6 4.8 108 66-186 56-197 (256)
446 PRK11933 yebU rRNA (cytosine-C 94.7 0.14 3.1E-06 57.4 9.5 116 404-527 112-245 (470)
447 TIGR02081 metW methionine bios 94.6 0.12 2.6E-06 50.9 8.0 70 405-487 13-83 (194)
448 smart00138 MeTrc Methyltransfe 94.6 0.14 3.1E-06 53.1 8.7 41 406-448 100-150 (264)
449 KOG3178 Hydroxyindole-O-methyl 94.5 0.11 2.4E-06 54.9 7.8 94 68-185 179-272 (342)
450 COG1063 Tdh Threonine dehydrog 94.4 0.32 6.9E-06 52.8 11.3 118 41-185 143-266 (350)
451 KOG1269 SAM-dependent methyltr 94.3 0.13 2.8E-06 55.6 7.8 107 62-185 106-212 (364)
452 KOG3987 Uncharacterized conser 94.1 0.013 2.8E-07 56.8 -0.3 102 67-197 113-216 (288)
453 PF01861 DUF43: Protein of unk 94.0 0.3 6.5E-06 49.3 9.2 99 387-491 26-124 (243)
454 KOG1253 tRNA methyltransferase 94.0 0.038 8.3E-07 60.5 3.0 105 67-187 110-215 (525)
455 KOG3420 Predicted RNA methylas 93.9 0.08 1.7E-06 48.7 4.5 82 397-487 40-122 (185)
456 PF09445 Methyltransf_15: RNA 93.9 0.13 2.9E-06 49.0 6.2 74 408-487 2-77 (163)
457 cd00315 Cyt_C5_DNA_methylase C 93.9 0.1 2.2E-06 54.5 6.0 69 69-156 2-70 (275)
458 COG3129 Predicted SAM-dependen 93.9 0.14 3E-06 50.9 6.3 83 66-159 78-164 (292)
459 PF04672 Methyltransf_19: S-ad 93.9 0.57 1.2E-05 48.2 11.1 122 58-190 58-192 (267)
460 TIGR03438 probable methyltrans 93.9 0.47 1E-05 50.3 11.0 72 392-469 52-126 (301)
461 COG1064 AdhP Zn-dependent alco 93.7 0.32 7E-06 51.9 9.3 92 63-185 163-256 (339)
462 COG4106 Tam Trans-aconitate me 93.7 0.12 2.6E-06 50.9 5.5 110 388-520 14-125 (257)
463 PF01555 N6_N4_Mtase: DNA meth 93.7 0.16 3.5E-06 50.8 6.8 52 55-118 180-231 (231)
464 KOG3115 Methyltransferase-like 93.6 0.3 6.5E-06 47.6 8.0 62 66-137 60-127 (249)
465 KOG2798 Putative trehalase [Ca 93.6 0.63 1.4E-05 48.4 10.7 61 48-120 123-192 (369)
466 KOG1596 Fibrillarin and relate 93.5 0.2 4.4E-06 50.0 6.7 107 63-186 153-259 (317)
467 KOG2078 tRNA modification enzy 93.3 0.055 1.2E-06 58.1 2.8 68 60-139 243-311 (495)
468 PRK11524 putative methyltransf 93.3 0.24 5.2E-06 52.1 7.6 54 57-122 199-252 (284)
469 PRK13699 putative methylase; P 93.2 0.28 6.1E-06 49.7 7.7 58 54-123 151-208 (227)
470 KOG0024 Sorbitol dehydrogenase 92.9 0.16 3.5E-06 53.1 5.2 42 405-448 169-212 (354)
471 PF12147 Methyltransf_20: Puta 92.9 0.92 2E-05 47.0 10.6 117 393-521 123-246 (311)
472 PF08123 DOT1: Histone methyla 92.8 0.55 1.2E-05 46.8 8.9 86 399-487 36-130 (205)
473 COG0275 Predicted S-adenosylme 92.8 0.72 1.6E-05 48.0 9.8 81 64-155 21-103 (314)
474 COG2384 Predicted SAM-dependen 92.8 0.36 7.8E-06 47.9 7.3 113 397-535 10-124 (226)
475 PF11968 DUF3321: Putative met 92.7 0.15 3.4E-06 50.5 4.8 87 68-183 53-139 (219)
476 PF05219 DREV: DREV methyltran 92.6 0.76 1.7E-05 46.9 9.6 90 405-521 94-185 (265)
477 PRK11760 putative 23S rRNA C24 92.6 0.23 5E-06 52.8 6.1 68 404-487 210-278 (357)
478 KOG3010 Methyltransferase [Gen 92.4 0.19 4.2E-06 50.3 4.9 35 408-446 36-71 (261)
479 COG1063 Tdh Threonine dehydrog 92.0 0.34 7.4E-06 52.6 6.9 57 378-436 143-201 (350)
480 KOG2671 Putative RNA methylase 91.9 0.16 3.5E-06 53.2 3.9 83 62-158 204-294 (421)
481 PRK04148 hypothetical protein; 91.5 0.55 1.2E-05 43.3 6.5 77 393-485 4-83 (134)
482 COG0286 HsdM Type I restrictio 91.3 0.88 1.9E-05 51.6 9.4 88 66-159 186-275 (489)
483 PF01795 Methyltransf_5: MraW 91.3 0.38 8.2E-06 50.7 6.0 80 64-155 18-100 (310)
484 KOG2899 Predicted methyltransf 91.1 0.97 2.1E-05 45.5 8.2 35 402-436 55-90 (288)
485 KOG2915 tRNA(1-methyladenosine 91.1 1.9 4.1E-05 44.2 10.4 98 397-505 97-196 (314)
486 KOG0024 Sorbitol dehydrogenase 91.0 0.4 8.7E-06 50.2 5.6 45 64-118 167-212 (354)
487 PRK00050 16S rRNA m(4)C1402 me 91.0 0.87 1.9E-05 48.0 8.3 77 404-487 18-98 (296)
488 KOG2352 Predicted spermine/spe 90.8 2 4.3E-05 47.6 11.1 109 61-185 42-158 (482)
489 COG1568 Predicted methyltransf 90.7 0.59 1.3E-05 47.7 6.3 79 67-158 153-231 (354)
490 KOG1227 Putative methyltransfe 90.7 0.1 2.3E-06 53.7 1.1 92 407-518 196-289 (351)
491 PF13578 Methyltransf_24: Meth 90.6 0.077 1.7E-06 46.7 -0.0 55 428-487 23-77 (106)
492 KOG1709 Guanidinoacetate methy 90.3 1.2 2.5E-05 44.1 7.8 111 393-520 90-202 (271)
493 PRK09880 L-idonate 5-dehydroge 90.1 1.5 3.2E-05 47.3 9.5 96 64-185 167-263 (343)
494 PF03141 Methyltransf_29: Puta 90.0 0.39 8.4E-06 53.3 4.8 113 54-187 351-466 (506)
495 PF00145 DNA_methylase: C-5 cy 89.9 0.42 9.2E-06 50.9 5.0 68 69-156 2-69 (335)
496 PRK00536 speE spermidine synth 89.5 1.3 2.9E-05 45.7 8.1 117 392-531 57-178 (262)
497 COG4798 Predicted methyltransf 89.3 1.7 3.6E-05 42.4 7.8 128 43-185 26-163 (238)
498 COG0116 Predicted N6-adenine-s 88.7 2.2 4.8E-05 46.2 9.2 91 390-487 176-307 (381)
499 KOG1562 Spermidine synthase [A 88.5 1.1 2.4E-05 46.4 6.5 113 67-191 122-239 (337)
500 KOG3201 Uncharacterized conser 88.5 0.24 5.2E-06 46.5 1.6 103 404-519 28-135 (201)
No 1
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=100.00 E-value=8.7e-80 Score=630.38 Aligned_cols=600 Identities=35% Similarity=0.520 Sum_probs=491.9
Q ss_pred ccccccccCCCCCccceeEeccCCCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhccCC--------CEEEEEcC
Q 044245 4 QRMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVTKS--------CHVLDIGA 75 (694)
Q Consensus 4 ~~~~~~~~~~~~g~~~w~~~~~~~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~~~--------~~VLDiG~ 75 (694)
++||++|.||.||+.||..++++|| +++.++++.|.+|++|..||.+|+.+|++.+.+. ..|||||+
T Consensus 1 ~~vF~~r~np~TG~~EWiv~ee~yd-----~~qelArSsy~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigt 75 (636)
T KOG1501|consen 1 QRVFQLRQNPLTGNSEWIVIEENYD-----TDQELARSSYLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGT 75 (636)
T ss_pred CchhhhhcCCCCCceeEEEeecccc-----hHHHHHHhhHHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccC
Confidence 5899999999999999999999999 7999999999999999999999999999877642 46899999
Q ss_pred CCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEc
Q 044245 76 GTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSE 155 (694)
Q Consensus 76 GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse 155 (694)
|||+|||||+++|+ .+|||||.-.+|.++|+++...||++++|++|+++++++..+.. .+.|+++.|
T Consensus 76 GTGLLSmMAvraga-----------D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~--~RadI~v~e 142 (636)
T KOG1501|consen 76 GTGLLSMMAVRAGA-----------DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGS--SRADIAVRE 142 (636)
T ss_pred CccHHHHHHHHhcC-----------CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCc--chhhhhhHh
Confidence 99999999999997 68999999999999999999999999999999999999986431 579999999
Q ss_pred cccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecchhhhhhcccCcccccccCCeeeccCCccceeeecccc
Q 044245 156 ILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQ 235 (694)
Q Consensus 156 ~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 235 (694)
.++..+++|+.++.+.+|.++++.+|.+.+|.++|+|+++|||..||.++++.+.+.+...|+.+.|.+.++..+++..+
T Consensus 143 ~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~ 222 (636)
T KOG1501|consen 143 DFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCNLNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQ 222 (636)
T ss_pred hhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhhhhccccccccccCCcccCCCccccCCCchhHH
Confidence 99999999999999999999999999999999999999999999999999988877788899999988887776666555
Q ss_pred eeeeeccccccceecCCCeEEEEEEcCCCCCCC--ceeeEEEEEccCCceeEEEEEEEEeecCCCcEEecCCCCCCC---
Q 044245 236 YAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSH--GEAELQIKSTDDGRVHAVVSWWVLQLDREGTIFYSTAPRWIS--- 310 (694)
Q Consensus 236 ~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~~~--~~~~~~~~~~~~G~~~g~~~Wf~~~l~~~~~i~lST~P~~~~--- 310 (694)
....++..+.+++.||++-.+|.+||....... ..........++|++....+||++.||..+.+.+..+|.|.+
T Consensus 223 d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~~~~~r~~va~~Sg~~~~~l~wwdi~mD~~g~~f~~m~p~w~~~~~ 302 (636)
T KOG1501|consen 223 DSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSEIEELRPPVAVHSGPLRSNLLWWDISMDQFGFSFLVMQPLWTGVTI 302 (636)
T ss_pred HHHHhhcchhhheeecCcceeEEeecchhhhcchhhhhhcCcccccccchhheeeeeeeeeccCcceEEEecceecCCCh
Confidence 555566777889999999999999998533222 122334566789999999999999999999999999998852
Q ss_pred -CCCccCccceeeeecCC-Ccee-ecCCCEEEEEEEecceEEEEEEeeecCCCcc---ccccccCcCcccccChh--HHh
Q 044245 311 -TGNWCDHWKQCVWFIPG-KGMS-ICKGEELLFHALHTETSVSYELKSQIPITDE---RQHNLNAKDFQLALPPE--RIA 382 (694)
Q Consensus 311 -~~~w~~hW~Q~v~~l~~-~pi~-V~~Gd~l~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~~r~--~i~ 382 (694)
+..|+.||.|+++++++ +..+ ++....+.+-..|+..++|+...-..+-.+. ...+.|.|+.|+.+-+. ++.
T Consensus 303 ~~~~~~~~weq~c~y~~~~~~~~i~~~ss~~~v~~~H~~l~i~~~~h~~~~~~n~r~~~~~~~~~~~~h~a~~~~~s~~g 382 (636)
T KOG1501|consen 303 GNSVFGLLWEQACPYPKEKKGNRIHNVSSLMTVFSYHLWLYIYRTDHYHCHLGNKRFMLPDTLKPLLIHMAFQKIVSNIG 382 (636)
T ss_pred HHHHHHHHHHHhcCCChhhhcCceeeccceEEEeeeeeeeEEeeeeeeccccccccccCcccccchhhhhhhhccchhHh
Confidence 34588999999998863 1233 4444677777889999999887644332222 23466889999988877 788
Q ss_pred hcCChhHHHHHHHHHHHHhcCCCCCcEEEecCCchHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEE
Q 044245 383 IYGDGEWRLSMVMAMRNALQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEI 462 (694)
Q Consensus 383 ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~GgiLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~v 462 (694)
.++++.|+..|..++.+... .+.++|-+. .+++.
T Consensus 383 e~~~q~~~~r~~~~l~e~~r---------------------------------------------~if~~~~~~-~Klsn 416 (636)
T KOG1501|consen 383 EMGRQIWPKRIQARLSERER---------------------------------------------VIFNQRLIQ-LKLSN 416 (636)
T ss_pred hhhhhhhhHHHHHHHHHHHH---------------------------------------------HHHHHHHHH-Hhhcc
Confidence 99999998888877663221 111111111 23333
Q ss_pred eecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChhhhhhcC
Q 044245 463 LQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIWNSRR 542 (694)
Q Consensus 463 i~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~l~~~~~ 542 (694)
++...+-++.+ ...|++++||||.. +|+||.+|+|||.+.+++..+.|+.++.|+.+.|.|.|+++++||+++.
T Consensus 417 ~e~vp~i~t~~----ds~~ivl~epf~~t--am~PW~~L~F~Y~~~~l~~~~G~~~~V~P~~~~L~Ai~~kF~DL~~I~S 490 (636)
T KOG1501|consen 417 NESVPAIMTSP----DSPDIVLAEPFVKT--AMNPWNHLRFLYDVEVLKMMHGDELRVEPHMGVLKAIPEKFEDLQNIAS 490 (636)
T ss_pred cccchhhhcCC----CCCceeecchhhhh--ccCchhheeeeeeHHHHHHhcCCceeeccccchhhhhhHHHHHHHhhcc
Confidence 33322223332 24589999999996 8999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCCCCcceeEEEEecCCeeeeEE
Q 044245 543 SLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPISPCQGKVQVEFTEPGLCHGF 622 (694)
Q Consensus 543 ~~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~~g~ 622 (694)
++++|.|||++-|+++.....++.+-. .+..|+|+|+| ..+++|.+|++|||..+.... +..+.+.+.|.-||+
T Consensus 491 ~~G~~~GFDl~~~Dei~~kA~~~~da~-~~E~~LWEY~~---~~~~d~~eIL~F~~~~~V~~Q--k~~V~i~~~~sS~A~ 564 (636)
T KOG1501|consen 491 DVGTVNGFDLSFFDEISTKARTATDAI-VDEQSLWEYAG---IVKGDAVEILRFPIDGRVSSQ--KCVVNIDNMSSSNAI 564 (636)
T ss_pred cccccccceeeehhHHHHhhchhhhhh-hccchhhhccC---eecCCceeEEEeccCCccccc--eeEEEccCCCccccc
Confidence 999999999999999865443322211 23358999987 689999999999999976432 456889999999999
Q ss_pred EEEEEEEecCCCcEEEecCCC----------CCceeeeEEecCcceeccccCCCCCCcceeEEEEEEEeCCCeeEEEEee
Q 044245 623 ALWIDWVLDSENSIVISTGPD----------KRYWKQGVKLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGELNVQHT 692 (694)
Q Consensus 623 ~~Wfd~~~~~~~~~~lst~P~----------~~hW~Q~v~~l~~p~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (694)
+.||+|.|.+ +.||||.. .+|.||+|||+ +..-.|+ +++++.+.||+++|+|+|+..
T Consensus 565 ~mWME~~~~~---~nLSTGLL~~~~~G~~~WN~~~KQ~VYF~---~t~L~~~-------ksl~~~~~F~~~TGDI~~qF~ 631 (636)
T KOG1501|consen 565 PMWMEWEFGG---INLSTGLLSISSAGVPEWNKGYKQGVYFP---ITALRND-------KSLCLHALFDKSTGDINFQFG 631 (636)
T ss_pred eeeEEeeeCc---eeecccceeecCCCCcccCccccceeEEE---hHHhCCC-------ceEEEEEEEcCCCCceEEEec
Confidence 9999999985 45888875 24669999987 4444555 389999999999999998753
No 2
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-59 Score=475.62 Aligned_cols=274 Identities=18% Similarity=0.216 Sum_probs=239.6
Q ss_pred hhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccE
Q 044245 382 AIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRV 460 (694)
Q Consensus 382 ~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i 460 (694)
+||+|.+|+++||.||.+|...|+||+||||||| ||||||||||| |++|||||+ +.+| +.++++++.||++ ++|
T Consensus 37 eML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~--S~ia-~~a~~iv~~N~~~-~ii 111 (346)
T KOG1499|consen 37 EMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEA--SSIA-DFARKIVKDNGLE-DVI 111 (346)
T ss_pred HHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEec--hHHH-HHHHHHHHhcCcc-ceE
Confidence 7999999999999999999999999999999999 99999999997 999999999 8887 6889999999998 999
Q ss_pred EEeecccccccccccCCccccEEEccc--cccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChhhh
Q 044245 461 EILQKGKKCLTMDDTQQKKVDLLIGEP--YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIW 538 (694)
Q Consensus 461 ~vi~~~~~~~~~~~l~~~~vDvivsE~--~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~l~ 538 (694)
+||+|++|++++ |.+||||||||| ||+++|+||+ ++| ||||+ ||+|||.|+|++|++++++++++.+.
T Consensus 112 ~vi~gkvEdi~L---P~eKVDiIvSEWMGy~Ll~EsMld-sVl---~ARdk---wL~~~G~i~P~~a~l~l~~i~d~~~~ 181 (346)
T KOG1499|consen 112 TVIKGKVEDIEL---PVEKVDIIVSEWMGYFLLYESMLD-SVL---YARDK---WLKEGGLIYPDRATLYLAAIEDDSYK 181 (346)
T ss_pred EEeecceEEEec---CccceeEEeehhhhHHHHHhhhhh-hhh---hhhhh---ccCCCceEccccceEEEEeccCchhh
Confidence 999999999965 469999999996 7899999999 999 99998 79999999999999999999999998
Q ss_pred hhcCC-CCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC---CCcceeEEEEec
Q 044245 539 NSRRS-LSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI---SPCQGKVQVEFT 614 (694)
Q Consensus 539 ~~~~~-~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~---~~~~~~~~~~~~ 614 (694)
..+.. |.+|||||||++....... +....++ +.+++++|+.+.++|+++.. ..+++.++++++
T Consensus 182 ~~~i~fW~~Vygfdms~~~~~~~~e---~lv~vv~----------~~~l~t~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~ 248 (346)
T KOG1499|consen 182 DDKIGFWDDVYGFDMSCIKKIAIKE---PLVDVVD----------PEQLLTEPCLIKEFDLYTVKIEDLSFTSPFKLKVT 248 (346)
T ss_pred hhhcCccccccccchhhhhhhhhcc---cceeccC----------hhHhcccceeeEEeeeeeeeccceeeccceEEEEc
Confidence 87654 8999999999999864211 1100011 24799999999999999974 247888999999
Q ss_pred CCeeeeEEEEEEEEEecCCC---cEEEecCCC--CCceeeeEEecCcceeccccCCCCCC----------cceeEEEEEE
Q 044245 615 EPGLCHGFALWIDWVLDSEN---SIVISTGPD--KRYWKQGVKLMAKPVAVGFEESGRTD----------LCSSTLVEAS 679 (694)
Q Consensus 615 ~~g~~~g~~~Wfd~~~~~~~---~~~lst~P~--~~hW~Q~v~~l~~p~~v~~g~~~~~~----------~~~~~~~~~~ 679 (694)
++|.+|||++|||+.|+... ++.+||||. .|||||+|++|++|+.|+.|+.+.|. .+..+.++..
T Consensus 249 r~~~i~g~v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~~~ 328 (346)
T KOG1499|consen 249 RNGYLHAFVAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLSLN 328 (346)
T ss_pred cCceEEEEEEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEEEe
Confidence 99999999999999998644 589999998 57999999999999999999998883 4444555555
Q ss_pred EeCC
Q 044245 680 FDPS 683 (694)
Q Consensus 680 ~~~~ 683 (694)
|.+.
T Consensus 329 ~~~~ 332 (346)
T KOG1499|consen 329 FKGQ 332 (346)
T ss_pred cCCc
Confidence 5555
No 3
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=2.4e-48 Score=387.53 Aligned_cols=279 Identities=18% Similarity=0.238 Sum_probs=230.5
Q ss_pred hhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc
Q 044245 378 PERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456 (694)
Q Consensus 378 r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~ 456 (694)
-..-.|+.|.+||.+|++||..|...|.|++|||+|+| ||||||||+|| |+||||||+ ++|| ++|+++++.|++.
T Consensus 150 ~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA--S~MA-qyA~~Lv~~N~~~ 225 (517)
T KOG1500|consen 150 SQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA--SEMA-QYARKLVASNNLA 225 (517)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhC-cceEEEEeh--hHHH-HHHHHHHhcCCcc
Confidence 34568999999999999999999999999999999999 99999999997 999999999 8887 5899999999998
Q ss_pred cccEEEeecccccccccccCCccccEEEcccc--ccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccC
Q 044245 457 IDRVEILQKGKKCLTMDDTQQKKVDLLIGEPY--YFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFC 534 (694)
Q Consensus 457 ~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~--~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~ 534 (694)
|||+||.|++|+|++ |||||||||||+ .+..|.||. +-+ .+| +||||.|.|+|..++++++|+++
T Consensus 226 -~rItVI~GKiEdieL----PEk~DviISEPMG~mL~NERMLE-sYl---~Ar----k~l~P~GkMfPT~gdiHlAPFsD 292 (517)
T KOG1500|consen 226 -DRITVIPGKIEDIEL----PEKVDVIISEPMGYMLVNERMLE-SYL---HAR----KWLKPNGKMFPTVGDIHLAPFSD 292 (517)
T ss_pred -ceEEEccCccccccC----chhccEEEeccchhhhhhHHHHH-HHH---HHH----hhcCCCCcccCcccceeecccch
Confidence 999999999999986 699999999984 344467777 322 344 48999999999999999999999
Q ss_pred hhhhhhcCC----C--Ccccccccccchhh-hhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC----C
Q 044245 535 PDIWNSRRS----L--SKIEGFDHAVVNTS-LGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI----S 603 (694)
Q Consensus 535 ~~l~~~~~~----~--~~v~G~d~s~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~----~ 603 (694)
+.|+-+... | +++||.|++++... .+..+..|.....+ -++|-.+...+.+||.... .
T Consensus 293 E~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD-----------~RilmA~sv~h~~dF~~~kEedlh 361 (517)
T KOG1500|consen 293 EQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFD-----------IRILMAKSVFHVIDFLNMKEEDLH 361 (517)
T ss_pred HHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccc-----------cceeeccchHhhhhhhhcccchhe
Confidence 998776532 4 59999999987663 45555555533222 1466677777889998865 2
Q ss_pred CcceeEEEEecCCeeeeEEEEEEEEEecCCC-cEEEecCCCC--CceeeeEEecCcceeccccCCCCCCcceeEEEEEEE
Q 044245 604 PCQGKVQVEFTEPGLCHGFALWIDWVLDSEN-SIVISTGPDK--RYWKQGVKLMAKPVAVGFEESGRTDLCSSTLVEASF 680 (694)
Q Consensus 604 ~~~~~~~~~~~~~g~~~g~~~Wfd~~~~~~~-~~~lst~P~~--~hW~Q~v~~l~~p~~v~~g~~~~~~~~~~~~~~~~~ 680 (694)
.+...+++++...|.|||+++|||+.|+++. +++++|+|.. |||.|..++|..|+-|+.|+.+.| ++.+.+.
T Consensus 362 ~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ltG----r~~LiA~- 436 (517)
T KOG1500|consen 362 EIDIPLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQTLTG----RLLLIAN- 436 (517)
T ss_pred eecccceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCchhhhcCCeeee----eEEEEEc-
Confidence 3566778889999999999999999999877 5899999984 699999999999999999999999 5555443
Q ss_pred eCCCeeEEE
Q 044245 681 DPSNGELNV 689 (694)
Q Consensus 681 ~~~~~~~~~ 689 (694)
.-++.+|++
T Consensus 437 ~~QSY~i~i 445 (517)
T KOG1500|consen 437 SRQSYDITI 445 (517)
T ss_pred cccceeEEE
Confidence 334444433
No 4
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-43 Score=358.40 Aligned_cols=278 Identities=28% Similarity=0.385 Sum_probs=232.4
Q ss_pred cccccccchHHHhhCCHHHHHHHHHHHHh--hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHH
Q 044245 34 QEPLLATTSYLDMLNDSYRNRAYRLAIDK--MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLP 111 (694)
Q Consensus 34 ~~~~l~~~~~~~ml~D~~r~~~y~~ai~~--~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~ 111 (694)
+..+.-...|..||+|..|+.+|+.+|.+ .+.++++|||+|||||+||+++|++|+ .+|+|+|.| .
T Consensus 26 f~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA-----------~~V~aVe~S-~ 93 (346)
T KOG1499|consen 26 FDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGA-----------RKVYAVEAS-S 93 (346)
T ss_pred hhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCc-----------ceEEEEech-H
Confidence 34444556688999999999999999975 578899999999999999999999997 799999985 6
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEE
Q 044245 112 MVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 112 ~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
+++.|++.++.|++++.|+++++.++++.+| .+++|+|||||||++++.|.++..++.|++++|+|||.++|+++++
T Consensus 94 ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l 170 (346)
T KOG1499|consen 94 IADFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATL 170 (346)
T ss_pred HHHHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceE
Confidence 7799999999999999999999999998754 2899999999999999999999999999999999999999999999
Q ss_pred EEEEecchhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCCC--CCc
Q 044245 192 YGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPD--SHG 269 (694)
Q Consensus 192 ~~~~ve~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~--~~~ 269 (694)
|+++++......- .+ + ....++||++++. .+.. .+.++ ++ ...+..++++|+.+.++|+.+... ...
T Consensus 171 ~l~~i~d~~~~~~-~i-~-fW~~Vygfdms~~--~~~~----~~e~l-v~-vv~~~~l~t~~~~i~~~Dl~t~~i~d~~F 239 (346)
T KOG1499|consen 171 YLAAIEDDSYKDD-KI-G-FWDDVYGFDMSCI--KKIA----IKEPL-VD-VVDPEQLLTEPCLIKEFDLYTVKIEDLSF 239 (346)
T ss_pred EEEeccCchhhhh-hc-C-ccccccccchhhh--hhhh----hcccc-ee-ccChhHhcccceeeEEeeeeeeeccceee
Confidence 9999998865431 01 1 1345778998874 1110 01111 12 344678999999999999987543 346
Q ss_pred eeeEEEEEccCCceeEEEEEEEEeecCC---CcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEE
Q 044245 270 EAELQIKSTDDGRVHAVVSWWVLQLDRE---GTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343 (694)
Q Consensus 270 ~~~~~~~~~~~G~~~g~~~Wf~~~l~~~---~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~ 343 (694)
+.++++.++++|.+|||++|||+.|... ..+.+||+|.. +. +||+|+||+++ +|+.|++|+.|.+++.
T Consensus 240 ~s~f~l~v~r~~~i~g~v~yFDv~F~~~~~~~~~~fST~P~~--p~---THWKQtVfyl~-~p~~v~~ge~i~g~it 310 (346)
T KOG1499|consen 240 TSPFKLKVTRNGYLHAFVAYFDVEFTGCHGKKRLGFSTSPSS--PY---THWKQTVFYLE-NPLTVKEGEDITGTIT 310 (346)
T ss_pred ccceEEEEccCceEEEEEEEEEEeeccCCCCCcceeecCCCC--CC---ceeeeEEEEec-CccceecCceEEEEEE
Confidence 6789999999999999999999999753 36899999973 33 49999999995 7999999999999975
No 5
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=1.5e-42 Score=379.70 Aligned_cols=293 Identities=27% Similarity=0.374 Sum_probs=221.3
Q ss_pred CCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhcc----------CCCEEEEEcCCCCHHHHHHHHHcCCCCCCcc
Q 044245 27 EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVT----------KSCHVLDIGAGTGLLSMMAARAMGSSDSTTS 96 (694)
Q Consensus 27 ~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~----------~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~ 96 (694)
...|+||+.+.|.+.+|..+.+|..|++.|.+||.+++. ++.+|||||||+|.|+++++++++...
T Consensus 137 Lq~PLqPl~dnL~s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~---- 212 (448)
T PF05185_consen 137 LQAPLQPLMDNLESQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG---- 212 (448)
T ss_dssp EE----TTTS---HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC----
T ss_pred ccCCCCCchhhhccccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC----
Confidence 457999999999999999999999999999999988653 147899999999999999999873110
Q ss_pred CCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHh
Q 044245 97 LNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDR 176 (694)
Q Consensus 97 ~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~ 176 (694)
.+.+|||||.|+.+...+++.++.|+++++|+++++|++++.. ++++|+||||+||+++.+| +.+..+++++|
T Consensus 213 --~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l----pekvDIIVSElLGsfg~nE-l~pE~Lda~~r 285 (448)
T PF05185_consen 213 --GAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL----PEKVDIIVSELLGSFGDNE-LSPECLDAADR 285 (448)
T ss_dssp --CESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH----SS-EEEEEE---BTTBTTT-SHHHHHHHGGG
T ss_pred --CCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC----CCceeEEEEeccCCccccc-cCHHHHHHHHh
Confidence 1479999999999998888888999999999999999999864 5799999999999999888 55566889999
Q ss_pred ccCCCCeEEcCceEEEEEEecchhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCC-eE
Q 044245 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEP-FK 255 (694)
Q Consensus 177 ~L~p~G~iiP~~~~~~~~~ve~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p-~~ 255 (694)
+|+|||++||+++++|++|++++.+|....... ...+ ++. ++.+. ..+...|+++ ..
T Consensus 286 fLkp~Gi~IP~~~t~ylaPiss~~l~~~~~~~~----~~~~-------~e~---------pyvv~--~~~~~~Ls~~~~~ 343 (448)
T PF05185_consen 286 FLKPDGIMIPSSYTSYLAPISSPKLYQEVRNWW----NPSS-------FET---------PYVVH--LSPFELLSDPPQP 343 (448)
T ss_dssp GEEEEEEEESSEEEEEEEEEE-HHHHHHHHHHH----GHHH-------HTS---------SEEE----GGGGBCSCCEEE
T ss_pred hcCCCCEEeCcchhhEEEEeeCHHHHHHHHhhc----chhh-------cCC---------cEEEE--ccchhhhcCCceE
Confidence 999999999999999999999999987421110 0000 111 11111 1246788888 89
Q ss_pred EEEEEcCCCC-----CCCceeeEEEEEccCCceeEEEEEEEEeecCCCcEEecCCCCCCCCCCccCccceeeeecCCCce
Q 044245 256 IFEFDFWKRP-----DSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGM 330 (694)
Q Consensus 256 ~~~fdf~~~~-----~~~~~~~~~~~~~~~G~~~g~~~Wf~~~l~~~~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi 330 (694)
+++|++.+.. ...+...++|++.++|++|||++||+++|+++ |.|||+|.. ...+.++||+|++|+|+ +|+
T Consensus 344 ~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhGfagwFd~~Ly~~--V~LSt~P~~-~~s~~~tsW~q~~fpL~-~Pl 419 (448)
T PF05185_consen 344 VFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHGFAGWFDAVLYGD--VVLSTSPSS-AHSPPMTSWFQIFFPLE-EPL 419 (448)
T ss_dssp EEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEEEEEEEEEEEECS--EEEESSTTS----TT--TTEEEEEEEE-EEE
T ss_pred EEEeccCCccccchhhhheeeeEEEeeCCCcEEEEEEEEEEEEeeCC--eeeecCCCc-CCCCCCCeEeEEEEEec-CcE
Confidence 9999998654 33566789999999999999999999999986 999999974 12234679999999995 799
Q ss_pred eecCCCEEEEEEE--ecceEEEEEEeee
Q 044245 331 SICKGEELLFHAL--HTETSVSYELKSQ 356 (694)
Q Consensus 331 ~V~~Gd~l~~~~~--~d~~~~~~~~~~~ 356 (694)
.|++||+|.+++. +|+.+|||+|..+
T Consensus 420 ~V~~g~~I~~~i~R~~~~~~vWYEW~v~ 447 (448)
T PF05185_consen 420 YVKAGDEISVHIWRKTDDRKVWYEWSVE 447 (448)
T ss_dssp EE-TT-EEEEEEEEECCSTCEEEEEEEE
T ss_pred EECCCCEEEEEEEEEcCCCcEEEEEEEe
Confidence 9999999999874 6899999999754
No 6
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=2.3e-37 Score=338.87 Aligned_cols=262 Identities=19% Similarity=0.298 Sum_probs=193.3
Q ss_pred ccChhHHh-hcCChhHHHHHHHHHHHHhcCC--------CCCcEEEecCC-chHHHHHHHcC----CCceEEEcCCCcCh
Q 044245 375 ALPPERIA-IYGDGEWRLSMVMAMRNALQGR--------VQPLCVVADDS-VFLTICVARLS----KTAHVLSLLPGLGD 440 (694)
Q Consensus 375 ~~~r~~i~-ml~D~~r~~~y~~Ai~~~~~~~--------~~~~vldig~G-giLsl~aA~~g----~a~~V~ave~~~~~ 440 (694)
.+.-...+ +-+|.+|.+.|++||.+++..+ ++++|+|||+| |+|+++|++|| +|++|||||. ++
T Consensus 147 nL~s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEk--n~ 224 (448)
T PF05185_consen 147 NLESQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEK--NP 224 (448)
T ss_dssp ---HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEES--ST
T ss_pred hhccccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcC--CH
Confidence 34444455 4599999999999999886543 35789999999 99999999985 4799999999 78
Q ss_pred hHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcccc--ccCCccccCcchhhHHHHHhhcccccCCCc
Q 044245 441 KGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPY--YFGNDGMLPWQNLRFWKERSKLDPVLSKEV 518 (694)
Q Consensus 441 ~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~--~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g 518 (694)
.|..++++.++.||++ ++|+||++++++++. ++||||||||++ |..+| ++| +.| .+|++ ||||||
T Consensus 225 ~A~~~l~~~v~~n~w~-~~V~vi~~d~r~v~l----pekvDIIVSElLGsfg~nE-l~p-E~L---da~~r---fLkp~G 291 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWG-DKVTVIHGDMREVEL----PEKVDIIVSELLGSFGDNE-LSP-ECL---DAADR---FLKPDG 291 (448)
T ss_dssp HHHHHHHHHHHHTTTT-TTEEEEES-TTTSCH----SS-EEEEEE---BTTBTTT-SHH-HHH---HHGGG---GEEEEE
T ss_pred hHHHHHHHHHHhcCCC-CeEEEEeCcccCCCC----CCceeEEEEeccCCccccc-cCH-HHH---HHHHh---hcCCCC
Confidence 8877777888999998 999999999998886 589999999974 44444 666 555 66655 899999
Q ss_pred eEEcceEEEEEEEccChhhhhhcCCCCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCc-eeEEEEe
Q 044245 519 IIMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNV-FTVMEFD 597 (694)
Q Consensus 519 ~i~P~~a~l~~~~v~~~~l~~~~~~~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~-~~l~~~d 597 (694)
++||+++++|++||+++.+|.+...+.+..+|+...+-. . .+...|+++ ..+++|+
T Consensus 292 i~IP~~~t~ylaPiss~~l~~~~~~~~~~~~~e~pyvv~----------------------~-~~~~~Ls~~~~~~~~F~ 348 (448)
T PF05185_consen 292 IMIPSSYTSYLAPISSPKLYQEVRNWWNPSSFETPYVVH----------------------L-SPFELLSDPPQPVFTFD 348 (448)
T ss_dssp EEESSEEEEEEEEEE-HHHHHHHHHHHGHHHHTSSEEE-------------------------GGGGBCSCCEEEEEETT
T ss_pred EEeCcchhhEEEEeeCHHHHHHHHhhcchhhcCCcEEEE----------------------c-cchhhhcCCceEEEEec
Confidence 999999999999999999998744322222222211110 0 123568888 8899998
Q ss_pred CCCCC------CCcceeEEEEecCCeeeeEEEEEEEEEecCCCcEEEecCCCC------CceeeeEEecCcceeccccCC
Q 044245 598 FSKPI------SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDK------RYWKQGVKLMAKPVAVGFEES 665 (694)
Q Consensus 598 ~~~~~------~~~~~~~~~~~~~~g~~~g~~~Wfd~~~~~~~~~~lst~P~~------~hW~Q~v~~l~~p~~v~~g~~ 665 (694)
+.+.. ......++++++++|++|||+.|||+.|.++ +.|||+|.. +||+|++|+|++|+.|++|+
T Consensus 349 hp~~~~~~~~~~~r~~~~~F~i~~~g~vhGfagwFd~~Ly~~--V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~- 425 (448)
T PF05185_consen 349 HPNPDLPENSDNSRSSELEFKIKRDGVVHGFAGWFDAVLYGD--VVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGD- 425 (448)
T ss_dssp TCGGG-GGGGGSEEEEEEEEEBSSSEEEEEEEEEEEEEEECS--EEEESSTTS---TT--TTEEEEEEEEEEEEE-TT--
T ss_pred cCCccccchhhhheeeeEEEeeCCCcEEEEEEEEEEEEeeCC--eeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCC-
Confidence 88753 2345678899999999999999999999866 789999975 69999999999999999999
Q ss_pred CCCCcceeEEEEEEEeCCC
Q 044245 666 GRTDLCSSTLVEASFDPSN 684 (694)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~ 684 (694)
.|.+++.-..+.
T Consensus 426 -------~I~~~i~R~~~~ 437 (448)
T PF05185_consen 426 -------EISVHIWRKTDD 437 (448)
T ss_dssp -------EEEEEEEEECCS
T ss_pred -------EEEEEEEEEcCC
Confidence 455555544443
No 7
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=2.7e-35 Score=294.22 Aligned_cols=267 Identities=23% Similarity=0.367 Sum_probs=221.0
Q ss_pred HHhhCCHHHHHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH
Q 044245 44 LDMLNDSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121 (694)
Q Consensus 44 ~~ml~D~~r~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~ 121 (694)
.+|+.|..|+..|.+||... -+.+++|||+|||+|+|++++|++|+ .+|||+|. .+|+++|++.++
T Consensus 153 QNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA-----------~~vYAvEA-S~MAqyA~~Lv~ 220 (517)
T KOG1500|consen 153 QNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGA-----------KKVYAVEA-SEMAQYARKLVA 220 (517)
T ss_pred HHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCc-----------ceEEEEeh-hHHHHHHHHHHh
Confidence 47999999999999999753 45689999999999999999999998 79999998 589999999999
Q ss_pred HcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecchhh
Q 044245 122 VNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFL 201 (694)
Q Consensus 122 ~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~~l 201 (694)
.|++.+||++|.|++++++ +|+++|+||||+||+.+.+|.+++..++++ ++|+|.|.++|..+.++.+|...+.|
T Consensus 221 ~N~~~~rItVI~GKiEdie----LPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE~L 295 (517)
T KOG1500|consen 221 SNNLADRITVIPGKIEDIE----LPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDEQL 295 (517)
T ss_pred cCCccceEEEccCcccccc----CchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchHHH
Confidence 9999999999999999985 578999999999999999999999999997 69999999999999999999999877
Q ss_pred hhhc----ccCcccccccCCeeeccC---CccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCCCCC---cee
Q 044245 202 WKLH----DLYNNEAKALDDIHLVPA---GMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSH---GEA 271 (694)
Q Consensus 202 ~~~~----~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~~~---~~~ 271 (694)
+-.+ ..+. -.+.+|+|++++ +.+++++ .| .+|.+ +.+.|-.+.....+||....+.+ ...
T Consensus 296 y~E~~nkAnFWy--Qq~fyGVdLt~L~g~a~~eYFr-----QP-vVDtF--D~RilmA~sv~h~~dF~~~kEedlh~i~i 365 (517)
T KOG1500|consen 296 YVEQFNKANFWY--QQNFYGVDLTPLYGSAHQEYFR-----QP-VVDTF--DIRILMAKSVFHVIDFLNMKEEDLHEIDI 365 (517)
T ss_pred HHHHHhhhhhhh--hhccccccchhhhhhhhhhhhc-----cc-ccccc--ccceeeccchHhhhhhhhcccchheeecc
Confidence 5421 1111 134678998875 2223321 11 13333 35777778788899998766553 346
Q ss_pred eEEEEEccCCceeEEEEEEEEeecCC-CcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEE
Q 044245 272 ELQIKSTDDGRVHAVVSWWVLQLDRE-GTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343 (694)
Q Consensus 272 ~~~~~~~~~G~~~g~~~Wf~~~l~~~-~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~ 343 (694)
.++|.+...|.+||+++|||+-|++. -.+.++|+|.. +. +||.|....|+ .|+.|++|++|++++.
T Consensus 366 PlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~a--pl---tHwyqvrCll~-~Pi~v~aGq~ltGr~~ 432 (517)
T KOG1500|consen 366 PLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTA--PL---THWYQVRCLLS-QPIFVKAGQTLTGRLL 432 (517)
T ss_pred cceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCC--Cc---ccceeeeeecc-CchhhhcCCeeeeeEE
Confidence 68899999999999999999999874 24688999973 33 49999999886 8999999999999874
No 8
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.5e-30 Score=271.93 Aligned_cols=292 Identities=20% Similarity=0.259 Sum_probs=235.4
Q ss_pred CCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhccC---------CCEEEEEcCCCCHHHHHHHHHcCCCCCCccC
Q 044245 27 EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVTK---------SCHVLDIGAGTGLLSMMAARAMGSSDSTTSL 97 (694)
Q Consensus 27 ~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~~---------~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~ 97 (694)
...|+||..+.+.+.+|..+..|.+++..|.+||.+++.. ..+++-+|+|.|.|.-...|+.....
T Consensus 319 Lq~PLQPLsdNLe~~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~----- 393 (649)
T KOG0822|consen 319 LQAPLQPLSDNLENQTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETD----- 393 (649)
T ss_pred hhCCCchhhhhhhhhhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhc-----
Confidence 5679999999999999999999999999999999987542 24688999999988666655543111
Q ss_pred CCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhc
Q 044245 98 NTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRL 177 (694)
Q Consensus 98 ~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~ 177 (694)
.+.++||+|.||+++...+. .+...+.++|++|.+|++.+..+ .++.|++|||++|++..+|-..+ .++-..++
T Consensus 394 -RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap---~eq~DI~VSELLGSFGDNELSPE-CLDG~q~f 467 (649)
T KOG0822|consen 394 -RKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP---REQADIIVSELLGSFGDNELSPE-CLDGAQKF 467 (649)
T ss_pred -CceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc---hhhccchHHHhhccccCccCCHH-HHHHHHhh
Confidence 25789999999999988875 66678889999999999998743 27899999999999998875544 55666789
Q ss_pred cCCCCeEEcCceEEEEEEecchhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEE
Q 044245 178 LVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIF 257 (694)
Q Consensus 178 L~p~G~iiP~~~~~~~~~ve~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~ 257 (694)
|+|+|+.||...|.|++|+.++.||+.-.-.. .. ..|+..+ .+ ...++..|++|+.+|
T Consensus 468 LkpdgIsIP~sYtSyi~PImS~~l~q~v~a~~----~~-------~~fe~~Y---------VV--~l~~~~~La~~q~vf 525 (649)
T KOG0822|consen 468 LKPDGISIPSSYTSYIAPIMSPKLYQEVKATN----DP-------NAFEAPY---------VV--LLHNYCILAEPQPVF 525 (649)
T ss_pred cCCCceEccchhhhhhcccccHHHHHHHHhcC----Cc-------cccccce---------EE--EecceeecCCCCcee
Confidence 99999999999999999999999997421111 00 1122221 11 123578999999999
Q ss_pred EEEcCCC---CCCCceeeEEEEEccCCceeEEEEEEEEeecCCCcEEecCCCCCCCCCCccCccceeeeecCCCceeecC
Q 044245 258 EFDFWKR---PDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICK 334 (694)
Q Consensus 258 ~fdf~~~---~~~~~~~~~~~~~~~~G~~~g~~~Wf~~~l~~~~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~ 334 (694)
+|..... -++.+...++|++.++|.+|||++|||.+|+.+ |.||+.|... ++ -+.+|.+.+|+++ +|+.|..
T Consensus 526 tF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~~LYkd--I~LSI~P~T~-TP-~MfSWFPi~fPlk-~Pi~v~e 600 (649)
T KOG0822|consen 526 TFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDAVLYKD--IFLSIEPNTH-TP-GMFSWFPIFFPLK-QPITVRE 600 (649)
T ss_pred EEecCCcccccccccceeEEEecCCCceEeecchhhhhhhhhe--eeEeeccCCC-CC-Cceeeeeeeeecc-CceEeCC
Confidence 9988654 234567889999999999999999999999997 9999999753 22 2569999999994 8999999
Q ss_pred CCEEEEEE--EecceEEEEEEeee
Q 044245 335 GEELLFHA--LHTETSVSYELKSQ 356 (694)
Q Consensus 335 Gd~l~~~~--~~d~~~~~~~~~~~ 356 (694)
|++|+++. ++|+..|||+|..+
T Consensus 601 ~~~lsv~~wR~~d~~kVWYEW~v~ 624 (649)
T KOG0822|consen 601 GSTLSVHFWRCVDSTKVWYEWSVE 624 (649)
T ss_pred CCeEEEEEEEEeCCceeEEEEEee
Confidence 99999997 58999999999877
No 9
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.96 E-value=4.2e-30 Score=264.92 Aligned_cols=265 Identities=16% Similarity=0.209 Sum_probs=202.6
Q ss_pred cCcccccChhHH-hhcCChhHHHHHHHHHHHHhcCCCC------CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChh
Q 044245 370 KDFQLALPPERI-AIYGDGEWRLSMVMAMRNALQGRVQ------PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDK 441 (694)
Q Consensus 370 ~~~h~~~~r~~i-~ml~D~~r~~~y~~Ai~~~~~~~~~------~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~ 441 (694)
++.|..+.|++. .||||..||.+|+.+|++.+...+. ..|||+|+| |+|||||+++| |.+|+|+|.. .+|
T Consensus 24 yd~~qelArSsy~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvrag-aD~vtA~Evf-kPM 101 (636)
T KOG1501|consen 24 YDTDQELARSSYLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVF-KPM 101 (636)
T ss_pred cchHHHHHHhhHHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhc-CCeEEeehhh-chH
Confidence 567888888887 5999999999999999999876543 368999999 99999999997 9999999994 777
Q ss_pred HHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEccccccCC--ccccCcchhhHHHHHhhcccccCCCce
Q 044245 442 GAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGN--DGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 442 ~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~--e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
+ .+|++|+..||++ |+|+||.+++++++... ..++||+|.|-|.... ||.|| ...+|++++++||+.
T Consensus 102 ~-d~arkI~~kng~S-dkI~vInkrStev~vg~--~~RadI~v~e~fdtEligeGalp-------s~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 102 V-DLARKIMHKNGMS-DKINVINKRSTEVKVGG--SSRADIAVREDFDTELIGEGALP-------SLQHAHDMLLVDNCK 170 (636)
T ss_pred H-HHHHHHHhcCCCc-cceeeeccccceeeecC--cchhhhhhHhhhhhhhhccccch-------hHHHHHHHhcccCCe
Confidence 6 5889999999999 99999999999998753 4679999999887633 67888 778888999999999
Q ss_pred EEcceEEEEEEEccChhhhhhc--CC--CCcccccccccchhhhhhcCCCCCCCC---CCCCCccccccccccccCCcee
Q 044245 520 IMPFKGILKACAIFCPDIWNSR--RS--LSKIEGFDHAVVNTSLGACGDLPAPKD---GPCLPFFTWQCGEIKKLSNVFT 592 (694)
Q Consensus 520 i~P~~a~l~~~~v~~~~l~~~~--~~--~~~v~G~d~s~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~ls~~~~ 592 (694)
.+|++|++|+++||+.-||+.+ .+ .++--|..+-+ .-++.++..++... .+..| .++++||++..
T Consensus 171 ~VP~ratvY~qlVES~~l~~~ndl~~~~~~ts~gv~~~p--~~lesc~G~~sv~d~ql~~~~~------~ef~~Ls~~~~ 242 (636)
T KOG1501|consen 171 TVPYRATVYCQLVESTFLCNLNDLRNNEAKTSDGVRLVP--PGLESCFGIKSVQDSQLVDAIE------KEFKLLSSEGT 242 (636)
T ss_pred eccccceEEEEEehhhhhhhhhccccccccccCCcccCC--CccccCCCchhHHHHHHhhcch------hhheeecCcce
Confidence 9999999999999999887653 11 23333432221 00111111111100 00001 24689999999
Q ss_pred EEEEeCCCCC---CCcceeEEEEecCCeeeeEEEEEEEEEecCCCcEEEecCCC-----------CCceeeeEEecC
Q 044245 593 VMEFDFSKPI---SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPD-----------KRYWKQGVKLMA 655 (694)
Q Consensus 593 l~~~d~~~~~---~~~~~~~~~~~~~~g~~~g~~~Wfd~~~~~~~~~~lst~P~-----------~~hW~Q~v~~l~ 655 (694)
+|.+||.... .++..........+|++..+.+|||+.+|+.+..-+..+|. ..||.|++++++
T Consensus 243 ~F~~df~~~~~s~s~~~~~r~~va~~Sg~~~~~l~wwdi~mD~~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~ 319 (636)
T KOG1501|consen 243 IFYSDFPRWIDSNSEIEELRPPVAVHSGPLRSNLLWWDISMDQFGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPK 319 (636)
T ss_pred eEEeecchhhhcchhhhhhcCcccccccchhheeeeeeeeeccCcceEEEecceecCCChHHHHHHHHHHHhcCCCh
Confidence 9999998643 12222223446789999999999999999988767777885 239999999998
No 10
>PTZ00357 methyltransferase; Provisional
Probab=99.94 E-value=5.5e-25 Score=237.77 Aligned_cols=313 Identities=19% Similarity=0.212 Sum_probs=217.2
Q ss_pred CCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhccC-----------------------------------CCEEE
Q 044245 27 EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVTK-----------------------------------SCHVL 71 (694)
Q Consensus 27 ~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~~-----------------------------------~~~VL 71 (694)
...|+||+.+.|.+.+|.-+.+|..+++.|.+||.+++.. ..+|+
T Consensus 626 LQ~PLQPLsDNLES~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVIm 705 (1072)
T PTZ00357 626 LQLPLQPLSHHLSSGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLV 705 (1072)
T ss_pred hcccCCchhhccchhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEE
Confidence 6779999999999999999999999999999999987621 03689
Q ss_pred EEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH-HHcCC-------CCcEEEEecccccccccc
Q 044245 72 DIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL-HVNGM-------GRNIKVINKRSDELEVGV 143 (694)
Q Consensus 72 DiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~-~~ngl-------~~~I~vi~~~~~~l~~~~ 143 (694)
-+|+|.|.|--.+.++..... -+.+|+|||+|++.+...+.+. +...+ .++|++|.+|++++..+.
T Consensus 706 VVGAGRGPLVdraLrAak~~g------vkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe 779 (1072)
T PTZ00357 706 LLGCGRGPLIDECLHAVSALG------VRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAA 779 (1072)
T ss_pred EEcCCccHHHHHHHHHHHHcC------CcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccc
Confidence 999999988554444432100 1468999999977655544443 33455 346999999999986431
Q ss_pred -----CC---CCCccEEEEccccccccCCChHHHHHHHHHhccCC----CC-------eEEcCceEEEEEEecchhhhhh
Q 044245 144 -----DI---DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE----NP-------LTVPCRVTTYGQLVESTFLWKL 204 (694)
Q Consensus 144 -----~l---~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p----~G-------~iiP~~~~~~~~~ve~~~l~~~ 204 (694)
.+ -+++|+||||++|+|..+|-..+. ++.+.++|++ +| +.||++.+.|++|+.++.||..
T Consensus 780 ~~~s~~~P~~~gKaDIVVSELLGSFGDNELSPEC-LDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~ 858 (1072)
T PTZ00357 780 ENGSLTLPADFGLCDLIVSELLGSLGDNELSPEC-LEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAA 858 (1072)
T ss_pred ccccccccccccccceehHhhhcccccccCCHHH-HHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHH
Confidence 01 148999999999999988865554 4445567764 55 5899999999999999999863
Q ss_pred cccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCC-------------------
Q 044245 205 HDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRP------------------- 265 (694)
Q Consensus 205 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~------------------- 265 (694)
+.. ....|+.+.+++-... .-.....++.+.. ..+..|++|+.+|+|......
T Consensus 859 --V~~---~~~~gltvP~p~c~~~-haa~fet~YVV~L--~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i 930 (1072)
T PTZ00357 859 --VTE---AAVKGLTVPPPGCHDH-HAALNHTLLVTNL--SRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPV 930 (1072)
T ss_pred --HHH---hhhcccccCCcccccc-chhhcccceEEEe--cceeecCCCcceeEEECCCccccccccccccccccccccc
Confidence 100 0112222221100000 0000011111111 134678899999999985422
Q ss_pred CCCceeeEEEEEccCCceeEEEEEEEEeecCCCc---EEecCCCCCCCCCCccCccceeeeecC--CCceeecCCC----
Q 044245 266 DSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGT---IFYSTAPRWISTGNWCDHWKQCVWFIP--GKGMSICKGE---- 336 (694)
Q Consensus 266 ~~~~~~~~~~~~~~~G~~~g~~~Wf~~~l~~~~~---i~lST~P~~~~~~~w~~hW~Q~v~~l~--~~pi~V~~Gd---- 336 (694)
.+.+...++|++..+|++|||++||+..|+.+.+ +.|||.|... + +-+-+|++.+|||. +++..+++|+
T Consensus 931 ~N~Rya~L~F~v~~d~vlHGFAGYFdAvLYkDVt~~~V~LSI~P~Th-T-pgMfSWFPIFFPLeP~~~~e~~~~gq~~~~ 1008 (1072)
T PTZ00357 931 SLERAASLLFEVPPCGRCCGLAGYFSAVLYQSATAPATIIATAPVER-T-EDMYSWFPCVFALEPAQQAELQDVGQAAAE 1008 (1072)
T ss_pred ccceeEEEEEecCCCcceeeeeeEEEEEeecCCCccceEeecCCCCC-C-CCccceeeeEEecCccccceEeeccccccc
Confidence 2345678999999999999999999999999854 7799999742 2 23569999999994 1445566676
Q ss_pred -----EEEEEEE----ecceEEEEEEeee
Q 044245 337 -----ELLFHAL----HTETSVSYELKSQ 356 (694)
Q Consensus 337 -----~l~~~~~----~d~~~~~~~~~~~ 356 (694)
.|.+... -++.+|||+|+..
T Consensus 1009 ~~~~~~i~~~l~Rr~~~~e~rVwYew~v~ 1037 (1072)
T PTZ00357 1009 ESRMVAIRVQLDRRTSLAEQRVWYEWSVT 1037 (1072)
T ss_pred cccceeEEEeeeeccccccceEEEEEEEe
Confidence 5666653 3799999999876
No 11
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.69 E-value=1.8e-16 Score=147.82 Aligned_cols=143 Identities=29% Similarity=0.425 Sum_probs=129.9
Q ss_pred cccccchHHHhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHH
Q 044245 36 PLLATTSYLDMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKL 115 (694)
Q Consensus 36 ~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~ 115 (694)
.++..++|.++|.|..|...|..+|.+... ..+.|+|+|||+||+.||++. .+|+|+|.+|..+++
T Consensus 4 rl~V~~yh~~LL~D~eRlavF~~ai~~va~--d~~~DLGaGsGiLs~~Aa~~A------------~rViAiE~dPk~a~~ 69 (252)
T COG4076 4 RLLVDSYHLDLLRDVERLAVFTSAIAEVAE--DTFADLGAGSGILSVVAAHAA------------ERVIAIEKDPKRARL 69 (252)
T ss_pred eEeechhHhhhhhhHHHHHHHHHHHHHHhh--hceeeccCCcchHHHHHHhhh------------ceEEEEecCcHHHHH
Confidence 356678899999999999999999998654 789999999999999999984 599999999999999
Q ss_pred HHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEE
Q 044245 116 MKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQL 195 (694)
Q Consensus 116 A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ 195 (694)
|++|++.+|+. +++++.+|..+..+ ++.|+|+||+++..++.|...+.+...+. +|+.++.++|+.+..-++|
T Consensus 70 a~eN~~v~g~~-n~evv~gDA~~y~f-----e~ADvvicEmlDTaLi~E~qVpV~n~vle-FLr~d~tiiPq~v~~~a~p 142 (252)
T COG4076 70 AEENLHVPGDV-NWEVVVGDARDYDF-----ENADVVICEMLDTALIEEKQVPVINAVLE-FLRYDPTIIPQEVRIGANP 142 (252)
T ss_pred hhhcCCCCCCc-ceEEEecccccccc-----cccceeHHHHhhHHhhcccccHHHHHHHH-HhhcCCccccHHHhhccCc
Confidence 99999999985 89999999999875 68999999999999999999998888777 9999999999999999999
Q ss_pred ecch
Q 044245 196 VEST 199 (694)
Q Consensus 196 ve~~ 199 (694)
|+-+
T Consensus 143 v~~~ 146 (252)
T COG4076 143 VRRP 146 (252)
T ss_pred cccC
Confidence 9755
No 12
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.68 E-value=3.8e-16 Score=145.69 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=117.4
Q ss_pred cccccChhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHh
Q 044245 372 FQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVA 450 (694)
Q Consensus 372 ~h~~~~r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~ 450 (694)
+.+.++..+..+|.|.+|...|+.||.+... ..+.|+|+| |+|||+||++ |++|||+|. .+..+.+|++++
T Consensus 3 ~rl~V~~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~--dPk~a~~a~eN~ 74 (252)
T COG4076 3 FRLLVDSYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA--AERVIAIEK--DPKRARLAEENL 74 (252)
T ss_pred eeEeechhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh--hceEEEEec--CcHHHHHhhhcC
Confidence 3456677778999999999999999999885 368999999 9999999998 899999999 777778999999
Q ss_pred ccCCcccccEEEeecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEE
Q 044245 451 DPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKAC 530 (694)
Q Consensus 451 ~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~ 530 (694)
+-||+ ++++|+.++..+.+. +++|+||+|...+ .++...... ..+..++ ||+.++.|+|..++.-+.
T Consensus 75 ~v~g~--~n~evv~gDA~~y~f-----e~ADvvicEmlDT---aLi~E~qVp--V~n~vle-FLr~d~tiiPq~v~~~a~ 141 (252)
T COG4076 75 HVPGD--VNWEVVVGDARDYDF-----ENADVVICEMLDT---ALIEEKQVP--VINAVLE-FLRYDPTIIPQEVRIGAN 141 (252)
T ss_pred CCCCC--cceEEEecccccccc-----cccceeHHHHhhH---HhhcccccH--HHHHHHH-HhhcCCccccHHHhhccC
Confidence 99999 689999998877764 7899999998766 244423222 3344443 899999999999999999
Q ss_pred EccC
Q 044245 531 AIFC 534 (694)
Q Consensus 531 ~v~~ 534 (694)
||+-
T Consensus 142 pv~~ 145 (252)
T COG4076 142 PVRR 145 (252)
T ss_pred cccc
Confidence 9874
No 13
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2.1e-14 Score=153.06 Aligned_cols=243 Identities=18% Similarity=0.245 Sum_probs=165.7
Q ss_pred CChhHHHHHHHHHHHHhcCCC-------CCcEEEecCC-chH---HHHHHHcC-CCceEEEcCCCcChhHHHHHHHHhcc
Q 044245 385 GDGEWRLSMVMAMRNALQGRV-------QPLCVVADDS-VFL---TICVARLS-KTAHVLSLLPGLGDKGAQYLRTVADP 452 (694)
Q Consensus 385 ~D~~r~~~y~~Ai~~~~~~~~-------~~~vldig~G-giL---sl~aA~~g-~a~~V~ave~~~~~~~~~~~~~i~~~ 452 (694)
.|.+.-..|.+||.+++..+. ..+++++|+| |=| +|-||+.- ..-++||||- .+-|.-.++. .+-
T Consensus 340 kD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEK--NPNAivtL~~-~n~ 416 (649)
T KOG0822|consen 340 KDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEK--NPNAIVTLQN-RNF 416 (649)
T ss_pred ccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEec--Ccchhhhhhh-hch
Confidence 588888999999999876541 1367889999 755 67777752 1234599999 7766544433 444
Q ss_pred CCcccccEEEeecccccccccccCCccccEEEccccccCCcc-ccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEE
Q 044245 453 NCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDG-MLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACA 531 (694)
Q Consensus 453 N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~-~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~ 531 (694)
-+.. ++||+|.++-.+...+ -+++||||||..-..-.+ +-| +=| |-..++|||+|+-||++-+=|++|
T Consensus 417 ~~W~-~~Vtii~~DMR~w~ap---~eq~DI~VSELLGSFGDNELSP-ECL------DG~q~fLkpdgIsIP~sYtSyi~P 485 (649)
T KOG0822|consen 417 ECWD-NRVTIISSDMRKWNAP---REQADIIVSELLGSFGDNELSP-ECL------DGAQKFLKPDGISIPSSYTSYIAP 485 (649)
T ss_pred hhhc-CeeEEEeccccccCCc---hhhccchHHHhhccccCccCCH-HHH------HHHHhhcCCCceEccchhhhhhcc
Confidence 5566 8999999876655421 289999999963221011 112 112 222357999999999999999999
Q ss_pred ccChhhhhhcCCCCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCC---C-CCcce
Q 044245 532 IFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKP---I-SPCQG 607 (694)
Q Consensus 532 v~~~~l~~~~~~~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~---~-~~~~~ 607 (694)
+.+..||+.-.....---||... =.+- .++-.|++++.+++|-=-.. . .....
T Consensus 486 ImS~~l~q~v~a~~~~~~fe~~Y----------------------VV~l-~~~~~La~~q~vftF~HPN~~~nv~N~R~~ 542 (649)
T KOG0822|consen 486 IMSPKLYQEVKATNDPNAFEAPY----------------------VVLL-HNYCILAEPQPVFTFEHPNFDFNVDNSRSK 542 (649)
T ss_pred cccHHHHHHHHhcCCccccccce----------------------EEEe-cceeecCCCCceeEEecCCcccccccccce
Confidence 99999998743322221222111 0000 12345888888887743332 2 22333
Q ss_pred eEEEEecCCeeeeEEEEEEEEEecCCCcEEEecCCCC-----CceeeeEEecCcceeccccCCC
Q 044245 608 KVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDK-----RYWKQGVKLMAKPVAVGFEESG 666 (694)
Q Consensus 608 ~~~~~~~~~g~~~g~~~Wfd~~~~~~~~~~lst~P~~-----~hW~Q~v~~l~~p~~v~~g~~~ 666 (694)
..+++++++|.+|||+.+||..+=.+ +.||+-|.. ..|-..+|.+++|+.|.+|+.+
T Consensus 543 s~eF~~~~~~~lHGFaGYFd~~LYkd--I~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~l 604 (649)
T KOG0822|consen 543 SVEFKVKSNGVLHGFAGYFDAVLYKD--IFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTL 604 (649)
T ss_pred eEEEecCCCceEeecchhhhhhhhhe--eeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeE
Confidence 56788999999999999999988655 579999962 2899999999999999999954
No 14
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=1.2e-13 Score=141.07 Aligned_cols=159 Identities=19% Similarity=0.237 Sum_probs=123.8
Q ss_pred CCccceeEeccCCCCCCCccccccccch-----HH---HhhCCHHHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHH
Q 044245 15 TGNSEWVVIEENEDVPESSQEPLLATTS-----YL---DMLNDSYRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAA 85 (694)
Q Consensus 15 ~g~~~w~~~~~~~~~p~~~~~~~l~~~~-----~~---~ml~D~~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa 85 (694)
+-...+..+..+||.+..+|..++.++. |+ +|--+..-..++....+++ +.+|.+|||||||.|.+++.+|
T Consensus 12 ~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA 91 (283)
T COG2230 12 SKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAA 91 (283)
T ss_pred cccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHH
Confidence 3445678888899999999987776532 32 2223344445555566664 7899999999999999999999
Q ss_pred HHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEE-ccccccccCC
Q 044245 86 RAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVS-EILDSELLGE 164 (694)
Q Consensus 86 ~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvs-e~~~~~l~~e 164 (694)
+... .+|+|++.|+++.+.+++.++..|++++|+++-.|.+++. ++||-||| +.+. .++.
T Consensus 92 ~~y~-----------v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------e~fDrIvSvgmfE--hvg~ 152 (283)
T COG2230 92 EEYG-----------VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------EPFDRIVSVGMFE--HVGK 152 (283)
T ss_pred HHcC-----------CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------cccceeeehhhHH--HhCc
Confidence 9964 5999999999999999999999999999999999988764 67999998 2222 2234
Q ss_pred ChHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 165 GLIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 165 ~~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
.-.+.++....++|+|||+++-+..+..
T Consensus 153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 153 ENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred ccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 4577788888889999999986665544
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.49 E-value=1.5e-13 Score=123.22 Aligned_cols=109 Identities=22% Similarity=0.228 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
|+.+|||||||+|.+++.+++..+ ..+|+|+|.|+.|++.|++++...+..++|+++++++ .... +.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP----------GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP--DF 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT----------TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT--TT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC----------CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc--cc
Confidence 578999999999999999999433 3689999999999999999998888889999999999 2221 33
Q ss_pred CCCccEEEEcc-ccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEI-LDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~-~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++||+|++.. ....++.......+++.+.+.|+|||+++-.
T Consensus 68 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 68 LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 46899999965 1222322223445667777899999998743
No 16
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.45 E-value=1.8e-13 Score=142.43 Aligned_cols=111 Identities=25% Similarity=0.352 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
++...++|.+...++++|||+|||||+|++.|++.|+ .+|+|+|+++.+++.|++|++.||+++++.+.
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA-----------~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~ 216 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA-----------KKVVAIDIDPLAVEAARENAELNGVEDRIEVS 216 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB-----------SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC-----------CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE
Confidence 6677888999889999999999999999999999997 79999999999999999999999999888763
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
...+. ..++||+|++|++..- +-.+...+.++|+|||.++..
T Consensus 217 --~~~~~-----~~~~~dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 217 --LSEDL-----VEGKFDLVVANILADV------LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp --CTSCT-----CCS-EEEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEE
T ss_pred --Eeccc-----ccccCCEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEc
Confidence 22221 2379999999977643 345666677899999998864
No 17
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.3e-12 Score=134.65 Aligned_cols=115 Identities=22% Similarity=0.274 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
+..-.+++.+.+.++.+|||+|||||+|++.+++.|+ .+|+|+|++|.+++.|+.|++.|+.+..++.-
T Consensus 149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA-----------~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA-----------KKVVGVDIDPQAVEAARENARLNGVELLVQAK 217 (300)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC-----------ceEEEecCCHHHHHHHHHHHHHcCCchhhhcc
Confidence 6667888999999999999999999999999999998 78999999999999999999999997433322
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..+..+.. ..++||+||+|++.. .+..+...+.++|+|||+++-..
T Consensus 218 ~~~~~~~~----~~~~~DvIVANILA~------vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 218 GFLLLEVP----ENGPFDVIVANILAE------VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cccchhhc----ccCcccEEEehhhHH------HHHHHHHHHHHHcCCCceEEEEe
Confidence 22222211 125899999987652 34466677778999999988664
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.41 E-value=5.8e-11 Score=134.04 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++.+. +|+|+|.++.|++.+++ .++..+++++++++......+ ..
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~------------~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~-~~ 100 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG------------QVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLN-IS 100 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC------------EEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccC-CC
Confidence 467999999999999999998864 89999999999987654 234345899999998643221 11
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|+++..-+++ .......++..+.++|+|||+++.
T Consensus 101 ~~~fD~I~~~~~l~~l-~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 101 DGSVDLIFSNWLLMYL-SDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred CCCEEEEehhhhHHhC-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2689999997544333 223356677777889999999864
No 19
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.39 E-value=8.6e-13 Score=136.81 Aligned_cols=153 Identities=24% Similarity=0.305 Sum_probs=103.4
Q ss_pred eeEeccCCCCCCCccccccccc-----hHHHhhCCHH---HHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCC
Q 044245 20 WVVIEENEDVPESSQEPLLATT-----SYLDMLNDSY---RNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGS 90 (694)
Q Consensus 20 w~~~~~~~~~p~~~~~~~l~~~-----~~~~ml~D~~---r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~ 90 (694)
...+..+||.++++|..++... .|+.--.+.. -.+++...+.++ +.+|.+|||||||.|.+++.+|+..+
T Consensus 7 ~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g- 85 (273)
T PF02353_consen 7 RENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG- 85 (273)
T ss_dssp HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--
T ss_pred HHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC-
Confidence 3445667999888888777653 2332222211 123334444443 77899999999999999999999943
Q ss_pred CCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEE-ccccccccCCChHHH
Q 044245 91 SDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVS-EILDSELLGEGLIPT 169 (694)
Q Consensus 91 ~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvs-e~~~~~l~~e~~l~~ 169 (694)
.+|+++..|++..+.|++.++..|++++|++...|..+++ .+||.||| +.+. .++....+.
T Consensus 86 ----------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------~~fD~IvSi~~~E--hvg~~~~~~ 147 (273)
T PF02353_consen 86 ----------CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------GKFDRIVSIEMFE--HVGRKNYPA 147 (273)
T ss_dssp -----------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------S-SEEEEESEGG--GTCGGGHHH
T ss_pred ----------cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------CCCCEEEEEechh--hcChhHHHH
Confidence 5999999999999999999999999999999999987754 58999998 2222 223445778
Q ss_pred HHHHHHhccCCCCeEEcCceEE
Q 044245 170 LQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 170 l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
+...+.++|+|||+++-+..+.
T Consensus 148 ~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 148 FFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp HHHHHHHHSETTEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEeccc
Confidence 8888899999999998765544
No 20
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=8.1e-12 Score=125.59 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=92.0
Q ss_pred HHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 54 RAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 54 ~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
..+++++... +.+|.+|||||||||-+++.+++..+ .++|+++|+|+.|++.|++.+...+..+ |++
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g----------~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~f 105 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG----------TGEVVGLDISESMLEVAREKLKKKGVQN-VEF 105 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC----------CceEEEEECCHHHHHHHHHHhhccCccc-eEE
Confidence 3455554443 23689999999999999999999875 4799999999999999999999888875 999
Q ss_pred EeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 132 INKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++|+++|++++ ..||++.+. +++-+-.-.+..+....|.|+|||+++
T Consensus 106 v~~dAe~LPf~D---~sFD~vt~~---fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 106 VVGDAENLPFPD---NSFDAVTIS---FGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred EEechhhCCCCC---CccCEEEee---ehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 999999999865 689999863 333333346667777778999999554
No 21
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.35 E-value=9.5e-12 Score=121.85 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=85.8
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+.++.+|||||||+|.+++.++++.. ..+|+++|.++.|++.|+++++.++++ ++++++++..++..
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~----------~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~- 109 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARP----------ELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ- 109 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCC----------CCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-
Confidence 345589999999999999999998654 469999999999999999999999997 49999999988652
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++||+|+++.+. .++.+.....++|+|||+++.-
T Consensus 110 ---~~~fDlV~~~~~~-------~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 110 ---EEKFDVVTSRAVA-------SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ---CCCccEEEEcccc-------CHHHHHHHHHHhcCCCeEEEEE
Confidence 4689999986321 3567777778899999998743
No 22
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.35 E-value=1.1e-11 Score=120.99 Aligned_cols=100 Identities=23% Similarity=0.321 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++.++ ..+|+++|.|+.|++.++++++.+++. +|+++++++.++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~----------~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~---- 106 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP----------ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH---- 106 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC----------CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc----
Confidence 488999999999999999988764 468999999999999999999999986 69999999988631
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++||+|+++.+. .++.+.....++|+|||.++..
T Consensus 107 ~~~fD~I~s~~~~-------~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 107 EEQFDVITSRALA-------SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cCCccEEEehhhh-------CHHHHHHHHHHhcCCCCEEEEE
Confidence 3689999996421 2455666677899999999843
No 23
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.35 E-value=9.2e-12 Score=120.63 Aligned_cols=105 Identities=25% Similarity=0.292 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++.++ ..+|+++|+|+.+++.|+++++.|++++ ++++..|..+-. .
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~----------~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~----~ 95 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP----------DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL----P 95 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST----------CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC----C
T ss_pred cCCeEEEecCChHHHHHHHHHhCC----------CCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc----c
Confidence 678999999999999999999886 3479999999999999999999999986 999999976532 1
Q ss_pred CCCccEEEEccccccccCCC--hHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEG--LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~--~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|+++|.......++ .+..+.....++|+|||.++
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 37999999998632221111 35566666778999999875
No 24
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.33 E-value=6.1e-10 Score=130.65 Aligned_cols=89 Identities=8% Similarity=-0.032 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
++.|.+.. +++.|||+|+| |.+|+.||+.| |++|+++|. ++.+.+.++++++.||++.++++++++++.+.-.
T Consensus 530 R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~--s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~ 603 (702)
T PRK11783 530 RRMIGQMA---KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDM--SNTYLEWAERNFALNGLSGRQHRLIQADCLAWLK 603 (702)
T ss_pred HHHHHHhc---CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeC--CHHHHHHHHHHHHHhCCCccceEEEEccHHHHHH
Confidence 45566554 46789999999 99999999985 899999999 7888889999999999953589999997654311
Q ss_pred cccCCccccEEEcc-cccc
Q 044245 473 DDTQQKKVDLLIGE-PYYF 490 (694)
Q Consensus 473 ~~l~~~~vDvivsE-~~~~ 490 (694)
.+ .++.|+||+. |||.
T Consensus 604 -~~-~~~fDlIilDPP~f~ 620 (702)
T PRK11783 604 -EA-REQFDLIFIDPPTFS 620 (702)
T ss_pred -Hc-CCCcCEEEECCCCCC
Confidence 12 4689999998 5665
No 25
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=124.61 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=89.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
...+|||+|||+|.+++++|++.. +.+|++||+.+.|++.|+++++.|+++++|+++++|+.++.....
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~----------~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~- 112 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTE----------KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV- 112 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCC----------CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-
Confidence 378999999999999999999854 369999999999999999999999999999999999998763221
Q ss_pred CCCccEEEEccccccccCC---------------ChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGE---------------GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e---------------~~l~~l~~~~~~~L~p~G~ii 185 (694)
..+||+|||||..+-.-.. ..++.+.....++|+|||.+.
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 2369999999966532111 135567777888999999764
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.28 E-value=2.3e-11 Score=115.61 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=86.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.++..+++... +..+++++|.|+.|++.|+++++.++++ +++++++|+.+++. .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~---------~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~--~ 69 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN---------PGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ--E 69 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST---------TTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG--C
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC---------CCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc--c
Confidence 3578999999999999999995422 1368999999999999999999999998 99999999999652 1
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
++++||+|++...- .+......++..+.++|+++|+++-....
T Consensus 70 ~~~~~D~I~~~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 70 LEEKFDIIISNGVL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp SSTTEEEEEEESTG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCeeEEEEcCch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 23689999986322 22334556777778899999998755444
No 27
>PTZ00357 methyltransferase; Provisional
Probab=99.28 E-value=1.3e-10 Score=127.56 Aligned_cols=280 Identities=13% Similarity=0.110 Sum_probs=159.9
Q ss_pred CChhHHHHHHHHHHHHhcCC---------------------------------CCCcEEEecCC-chH---HHHHHHc-C
Q 044245 385 GDGEWRLSMVMAMRNALQGR---------------------------------VQPLCVVADDS-VFL---TICVARL-S 426 (694)
Q Consensus 385 ~D~~r~~~y~~Ai~~~~~~~---------------------------------~~~~vldig~G-giL---sl~aA~~-g 426 (694)
.|.+.-+.|++||.+++... ...+|+++|+| |=| +|-|++. |
T Consensus 647 KDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~~g 726 (1072)
T PTZ00357 647 RDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALG 726 (1072)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHHcC
Confidence 58888899999999887321 00368999999 744 4566653 3
Q ss_pred CCceEEEcCCCcChhHHHHH-HHHhccCCcc------cccEEEeecccccccccc------cC--CccccEEEccccccC
Q 044245 427 KTAHVLSLLPGLGDKGAQYL-RTVADPNCFS------IDRVEILQKGKKCLTMDD------TQ--QKKVDLLIGEPYYFG 491 (694)
Q Consensus 427 ~a~~V~ave~~~~~~~~~~~-~~i~~~N~l~------~~~i~vi~~~~~~~~~~~------l~--~~~vDvivsE~~~~~ 491 (694)
-.-+|||||- ++-+..++ .+..+.+... +++|+||.++..++..+. ++ .+|+||||||..-.+
T Consensus 727 vkVrIyAVEK--NPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSF 804 (1072)
T PTZ00357 727 VRLRIFAIEK--NLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSL 804 (1072)
T ss_pred CcEEEEEEec--CcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhccc
Confidence 2347899999 53322222 2222333442 257999999877664321 11 248999999963211
Q ss_pred Ccc-ccCcchhhHHHHHhhcccccC-----------CCceEEcceEEEEEEEccChhhhhhcCCCCcccccccccchhhh
Q 044245 492 NDG-MLPWQNLRFWKERSKLDPVLS-----------KEVIIMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSL 559 (694)
Q Consensus 492 ~e~-~l~w~~l~f~~~r~~~~~~L~-----------p~g~i~P~~a~l~~~~v~~~~l~~~~~~~~~v~G~d~s~~~~~~ 559 (694)
=.+ +-| +=| .- ..++|| |.|+.||..-+=|++|+.+..||..-... ...|+-..+..
T Consensus 805 GDNELSP-ECL---DG---aQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~-~~~gltvP~p~--- 873 (1072)
T PTZ00357 805 GDNELSP-ECL---EA---FHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEA-AVKGLTVPPPG--- 873 (1072)
T ss_pred ccccCCH-HHH---HH---HHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHh-hhcccccCCcc---
Confidence 011 122 222 11 112344 45679999999999999999998763210 01111111000
Q ss_pred hhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC--------------------CCcceeEEEEecCCeee
Q 044245 560 GACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI--------------------SPCQGKVQVEFTEPGLC 619 (694)
Q Consensus 560 ~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~--------------------~~~~~~~~~~~~~~g~~ 619 (694)
+.+.... ....+|=... ..+-.|++|+.+++|.-.+.. +.....+.+++..+|+|
T Consensus 874 --c~~~haa--~fet~YVV~L-~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vl 948 (1072)
T PTZ00357 874 --CHDHHAA--LNHTLLVTNL-SRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRC 948 (1072)
T ss_pred --ccccchh--hcccceEEEe-cceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcce
Confidence 0000000 0000000000 012346677777777653321 11123466788999999
Q ss_pred eEEEEEEEEEecCCCc---EEEecCCCC-C----ceeeeEEecC---cceeccccCCCCCCcceeEEEEEEEeCC
Q 044245 620 HGFALWIDWVLDSENS---IVISTGPDK-R----YWKQGVKLMA---KPVAVGFEESGRTDLCSSTLVEASFDPS 683 (694)
Q Consensus 620 ~g~~~Wfd~~~~~~~~---~~lst~P~~-~----hW~Q~v~~l~---~p~~v~~g~~~~~~~~~~~~~~~~~~~~ 683 (694)
|||+.||+..|=.+.+ +.+||.|.. + .|=...|.|+ ++..++.|+.. .....-+.++++|+-.
T Consensus 949 HGFAGYFdAvLYkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~-~~~~~~~~i~~~l~Rr 1022 (1072)
T PTZ00357 949 CGLAGYFSAVLYQSATAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAA-AEESRMVAIRVQLDRR 1022 (1072)
T ss_pred eeeeeEEEEEeecCCCccceEeecCCCCCCCCccceeeeEEecCccccceEeeccccc-cccccceeEEEeeeec
Confidence 9999999999876643 789999972 2 7999999998 66666666411 0012345667776644
No 28
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.27 E-value=1.3e-11 Score=125.16 Aligned_cols=105 Identities=23% Similarity=0.242 Sum_probs=74.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||+|||||.++..+++..+ +.++|+++|.|+.|++.|++.++..+.. +|+++++|.+++++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~---------~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVG---------PNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPD 114 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS------------EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-T
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCC---------CccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCC
Confidence 45689999999999999999988754 2469999999999999999999988876 9999999999998754
Q ss_pred CCCCCccEEEEccccccccC-CChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLG-EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~-e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+.||+|++ ++.+. -.-.+..+....|+|+|||+++
T Consensus 115 ---~sfD~v~~----~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 115 ---NSFDAVTC----SFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp ---T-EEEEEE----ES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred ---CceeEEEH----HhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 78999997 33332 1225556667778999999885
No 29
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.26 E-value=1.2e-11 Score=122.04 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=86.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.+|.+|||||||-|+|+..+|+.|+ +|+|+|.+++++++|+..+..+|+. |+.....++++...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga------------~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-- 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA------------SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-- 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC------------eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc--
Confidence 3689999999999999999999996 9999999999999999999999984 88888888887632
Q ss_pred CCCCccEEEE-ccccccccCCChHHHHHHHHHhccCCCCeEEcCceE
Q 044245 145 IDSRADILVS-EILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 145 l~~~~DlIvs-e~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
.++||+|+| |.+. +=.....+.....++++|||.++-....
T Consensus 122 -~~~FDvV~cmEVlE----Hv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 122 -GGQFDVVTCMEVLE----HVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred -CCCccEEEEhhHHH----ccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 279999998 3222 2223455777778899999999866555
No 30
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.26 E-value=5e-11 Score=125.33 Aligned_cols=113 Identities=21% Similarity=0.286 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
+....+++.+...++.+|||+|||+|.+++.+++.|+ .+|+|+|+++.|++.|+++++.|++.+++.++
T Consensus 146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~-----------~~V~avDid~~al~~a~~n~~~n~~~~~~~~~ 214 (288)
T TIGR00406 146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGA-----------AKVVGIDIDPLAVESARKNAELNQVSDRLQVK 214 (288)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCC-----------CeEEEEECCHHHHHHHHHHHHHcCCCcceEEE
Confidence 4555666777677889999999999999999998875 68999999999999999999999998888887
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++.... ..++||+|+++++.. .+..+...+.++|+|||.++-.
T Consensus 215 ~~~~~~~-----~~~~fDlVvan~~~~------~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 215 LIYLEQP-----IEGKADVIVANILAE------VIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred ecccccc-----cCCCceEEEEecCHH------HHHHHHHHHHHHcCCCcEEEEE
Confidence 7663221 236899999975432 2445666667899999998753
No 31
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.23 E-value=7.2e-11 Score=125.10 Aligned_cols=121 Identities=20% Similarity=0.198 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHhhc---------cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHH
Q 044245 49 DSYRNRAYRLAIDKMV---------TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKV 119 (694)
Q Consensus 49 D~~r~~~y~~ai~~~~---------~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~ 119 (694)
+..|.+...+.+.+.+ .++.+|||||||+|.++..+++.|. +|+|+|.++.|++.|+++
T Consensus 105 N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~------------~V~GID~s~~~i~~Ar~~ 172 (322)
T PLN02396 105 NPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGA------------TVTGVDAVDKNVKIARLH 172 (322)
T ss_pred ChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCC------------EEEEEeCCHHHHHHHHHH
Confidence 3345555555554432 2457999999999999999998764 899999999999999988
Q ss_pred HHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 120 LHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 120 ~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++.++...+|++++++.+++... .++||+|++.-+-.++ .-...++..+.++|+|||.++-.
T Consensus 173 ~~~~~~~~~i~~~~~dae~l~~~---~~~FD~Vi~~~vLeHv---~d~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 173 ADMDPVTSTIEYLCTTAEKLADE---GRKFDAVLSLEVIEHV---ANPAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred HHhcCcccceeEEecCHHHhhhc---cCCCCEEEEhhHHHhc---CCHHHHHHHHHHHcCCCcEEEEE
Confidence 87777666899999998887532 3689999983211111 12456777788899999998744
No 32
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.23 E-value=1.1e-10 Score=111.41 Aligned_cols=108 Identities=25% Similarity=0.237 Sum_probs=90.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+++|||||||.+++.+++.++ .++|||+|.++++++..++|+++.|. ++++++.+++-+...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p----------~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~-- 98 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGP----------SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALP-- 98 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCC----------CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhc--
Confidence 67899999999999999999997775 68999999999999999999999996 599999999887642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
+++ ++|.|+-. +-+-++.++++.-..|+|||+++-+..++-
T Consensus 99 ~~~-~~daiFIG-------Gg~~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 99 DLP-SPDAIFIG-------GGGNIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred CCC-CCCEEEEC-------CCCCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 333 79999852 224577778877779999999998866654
No 33
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=6.5e-11 Score=122.45 Aligned_cols=123 Identities=14% Similarity=0.216 Sum_probs=91.2
Q ss_pred hhCCHHHHHHHHHHH----HhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH
Q 044245 46 MLNDSYRNRAYRLAI----DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121 (694)
Q Consensus 46 ml~D~~r~~~y~~ai----~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~ 121 (694)
..+...|...+.+-+ .....++.+|||+|||+|.++..+++.+. +|+++|.|+.|++.|+++++
T Consensus 20 ~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~------------~v~~vD~s~~~l~~a~~~~~ 87 (255)
T PRK11036 20 TTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGH------------QVILCDLSAEMIQRAKQAAE 87 (255)
T ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCC------------EEEEEECCHHHHHHHHHHHH
Confidence 334455555444333 33334568999999999999999999864 89999999999999999999
Q ss_pred HcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 122 VNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 122 ~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..|+.+++++++++..++.. ..+++||+|++..+-.++ +. ...++..+.++|+|||+++
T Consensus 88 ~~g~~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~vl~~~--~~-~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 88 AKGVSDNMQFIHCAAQDIAQ--HLETPVDLILFHAVLEWV--AD-PKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred hcCCccceEEEEcCHHHHhh--hcCCCCCEEEehhHHHhh--CC-HHHHHHHHHHHcCCCeEEE
Confidence 99988899999999987642 224689999984322211 11 3456667778999999985
No 34
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.22 E-value=1.9e-10 Score=119.21 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=80.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH--HcCCCCcEEEEecccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH--VNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~--~ngl~~~I~vi~~~~~~l~~ 141 (694)
+.++.+|||+|||+|.++..+++..+ +..+|+|+|.|+.|++.|+++.. ..+..++|++++++.+++++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~---------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~ 141 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVG---------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF 141 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC
Confidence 45688999999999999999888743 13599999999999999987654 22333589999999998875
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+. +.||+|++...-. +-.....++..+.+.|+|||+++
T Consensus 142 ~~---~sfD~V~~~~~l~---~~~d~~~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 142 DD---CYFDAITMGYGLR---NVVDRLKAMQEMYRVLKPGSRVS 179 (261)
T ss_pred CC---CCEeEEEEecccc---cCCCHHHHHHHHHHHcCcCcEEE
Confidence 32 6899998742211 11235566777778999999975
No 35
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.22 E-value=3.8e-11 Score=108.49 Aligned_cols=107 Identities=26% Similarity=0.302 Sum_probs=84.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
|.+|||+|||+|.+++.+++.+. .+++++|+|+.+++.|++++..+++.++++++.+|..++.. ....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~-----------~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~ 68 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGA-----------ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-PLPD 68 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCT-----------CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-TCTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCC-----------CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-hccC
Confidence 56899999999999999999983 59999999999999999999999998899999999988751 1123
Q ss_pred CCccEEEEccccccccC-----CChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLG-----EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~-----e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++||+|++++....... ......+.....++|+|||.++
T Consensus 69 ~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~ 112 (117)
T PF13659_consen 69 GKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLV 112 (117)
T ss_dssp T-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEE
T ss_pred ceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEE
Confidence 78999999987643211 1234566777778999999874
No 36
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.22 E-value=8.1e-11 Score=116.80 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=83.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.+++.+++.|. +|+|+|.|+.|++.|+++++.+++. +|+++..+..++..
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~------------~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~--- 92 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF------------DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTF--- 92 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC------------EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCc---
Confidence 3568999999999999999999864 8999999999999999999998885 68888888876543
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
+++||+|++...-++ +.....+.++..+.++|+|||.+
T Consensus 93 -~~~fD~I~~~~~~~~-~~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 93 -DGEYDFILSTVVLMF-LEAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred -CCCcCEEEEecchhh-CCHHHHHHHHHHHHHHcCCCcEE
Confidence 367999998644322 23345667888888899999985
No 37
>PLN02244 tocopherol O-methyltransferase
Probab=99.21 E-value=2e-10 Score=123.61 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=84.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++... .+|+|+|+|+.|++.|+++++.+++.++|+++.+|..+++++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g-----------~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~-- 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG-----------ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE-- 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC-----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC--
Confidence 4578999999999999999998743 599999999999999999999999988999999999887653
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++.....++ . ....++..+.++|+|||+++-
T Consensus 184 -~~~FD~V~s~~~~~h~--~-d~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 184 -DGQFDLVWSMESGEHM--P-DKRKFVQELARVAAPGGRIII 221 (340)
T ss_pred -CCCccEEEECCchhcc--C-CHHHHHHHHHHHcCCCcEEEE
Confidence 2689999984222111 1 245566677789999998864
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.21 E-value=1e-10 Score=120.34 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=87.2
Q ss_pred HhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccc
Q 044245 61 DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELE 140 (694)
Q Consensus 61 ~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~ 140 (694)
.+.+.++.+|||||||+|.++..+++... .+..+|+++|.|+.|++.|++++..++...+|++++++..+++
T Consensus 51 ~~~~~~~~~vLDlGcGtG~~~~~l~~~~~--------~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 51 ERFVQPGTQVYDLGCSLGAATLSVRRNIH--------HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 122 (247)
T ss_pred HHhCCCCCEEEEEcccCCHHHHHHHHhcC--------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC
Confidence 33456789999999999999988887421 0246999999999999999999998888879999999988765
Q ss_pred cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 141 VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
. +.+|+|++...-+++ .......++..+.+.|+|||.++-.
T Consensus 123 ~-----~~~D~vv~~~~l~~l-~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 123 I-----ENASMVVLNFTLQFL-EPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred C-----CCCCEEehhhHHHhC-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 358999985433332 2233456777778899999998754
No 39
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.19 E-value=1.4e-10 Score=119.52 Aligned_cols=107 Identities=26% Similarity=0.338 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
+....+++.+.+.++.+|||+|||+|.+++.+++.|+ .+|+|+|+|+.+++.|+++++.|++.+++.+.
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~-----------~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~ 174 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGA-----------KKVLAVDIDPQAVEAARENAELNGVELNVYLP 174 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCC-----------CeEEEEECCHHHHHHHHHHHHHcCCCceEEEc
Confidence 4445666666677899999999999999999888876 57999999999999999999999986566553
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++ .+||+|++++.. ..+..+.....++|+|||.++-.
T Consensus 175 ~~~-----------~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 175 QGD-----------LKADVIVANILA------NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCC-----------CCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 321 269999987533 12445566667799999999853
No 40
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.18 E-value=3.4e-10 Score=115.28 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=82.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++... +..+|+++|.++.|++.|+++.+.+++ ++++++.++..+++.+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~- 111 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVG---------PEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFD- 111 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCC-
Confidence 44678999999999999999988743 136999999999999999999988887 4899999999876542
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++||+|++...- -+-.....++....++|+|||+++
T Consensus 112 --~~~fD~V~~~~~l---~~~~~~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 112 --DNSFDYVTIGFGL---RNVPDYMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred --CCCccEEEEeccc---ccCCCHHHHHHHHHHHcCcCeEEE
Confidence 2689999874221 111224456666677999999886
No 41
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.18 E-value=3.8e-10 Score=112.17 Aligned_cols=106 Identities=23% Similarity=0.283 Sum_probs=84.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.+++.+++... +..+|+++|.++.|++.|+++++.+++.+++.++.++..+...
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~---------~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~-- 106 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVG---------ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF-- 106 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh--
Confidence 56789999999999999999988643 1368999999999999999999999976789999999876421
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
...++||.|++.. +...+..++....+.|+|||+++-
T Consensus 107 ~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 107 TINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred hcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEE
Confidence 2336899999742 122355666666779999999884
No 42
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.18 E-value=5.7e-10 Score=101.51 Aligned_cols=106 Identities=25% Similarity=0.240 Sum_probs=83.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++..+ ..+|+++|.|+.+++.|+++++.+++. +++++.++..+.. .
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~--~ 83 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVP----------NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEAL--E 83 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC----------CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccC--h
Confidence 34578999999999999999999864 368999999999999999999988886 7899988866422 1
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
...++||+|++... ....+.+.+...++|+|||.++-..
T Consensus 84 ~~~~~~D~v~~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 DSLPEPDRVFIGGS------GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhcCCCCEEEECCc------chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 22368999997421 1234567777788999999988654
No 43
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.17 E-value=1.7e-10 Score=114.33 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++.|. +|+|+|.|+.|++.++++++.+++. +++...+..... +
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~------------~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~----~ 91 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY------------DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA----L 91 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC------------eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc----c
Confidence 467999999999999999999864 8999999999999999999888874 677667765443 2
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++..+.+++ .....+.+...+.++|+|||+++
T Consensus 92 ~~~fD~I~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 92 NEDYDFIFSTVVFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred cCCCCEEEEecccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 3579999986543222 23356677788888999999854
No 44
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=6e-10 Score=111.32 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=78.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++... +.++|+++|.++.+++.|+++++.+++.++++++.+|..+...
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~---------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-- 138 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIE---------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-- 138 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--
Confidence 45678999999999999999888753 1368999999999999999999999988789999999876432
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...+||+|++.... + .+...+.+.|+|||+++
T Consensus 139 -~~~~fD~Ii~~~~~-----~----~~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 139 -KHAPFDAIIVTAAA-----S----TIPSALVRQLKDGGVLV 170 (205)
T ss_pred -cCCCccEEEEccCc-----c----hhhHHHHHhcCcCcEEE
Confidence 12589999985221 1 22234556899999885
No 45
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=5.3e-10 Score=112.27 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=78.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ +.++|+++|.++.+++.|+++++.+++. +|+++.+|..+...+
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~---------~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~~- 142 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVG---------KSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYEE- 142 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCc-
Confidence 56789999999999999999988754 2369999999999999999999999885 899999998754321
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..+||+|++.. .. +. +...+.+.|+|||+++
T Consensus 143 --~~~fD~I~~~~----~~-~~----~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 143 --NAPYDRIYVTA----AG-PD----IPKPLIEQLKDGGIMV 173 (212)
T ss_pred --CCCcCEEEECC----Cc-cc----chHHHHHhhCCCcEEE
Confidence 26899998742 11 22 2234556899999875
No 46
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.13 E-value=3.2e-10 Score=122.30 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=81.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC--CcEEEEeccccccccccC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG--RNIKVINKRSDELEVGVD 144 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~--~~I~vi~~~~~~l~~~~~ 144 (694)
+.+|||+|||+|.+++.+++.++ ..+|+++|.|+.|++.|+++++.|+.+ ++++++.+|..+-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P----------~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~---- 294 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP----------QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---- 294 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC----
Confidence 46999999999999999999875 469999999999999999999999864 37898888764321
Q ss_pred CCCCccEEEEccccccc--cCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSEL--LGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l--~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+++||+|+|++..+.. +.+.....++....++|+|||.++
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~ 337 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELY 337 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEE
Confidence 12589999999866432 222344556666678999999765
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.13 E-value=9.3e-10 Score=108.34 Aligned_cols=101 Identities=26% Similarity=0.284 Sum_probs=80.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.+++.+++.++ ..+|+++|.|+.+++.|+++++.+++. +++++.++...
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~----------~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~----- 92 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFP----------SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI----- 92 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-----
Confidence 45678999999999999999998864 469999999999999999999999885 79999988642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++++||+|++.... +.++.+.....+.|+|||+++-
T Consensus 93 ~~~~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 93 ELPGKADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred hcCcCCCEEEECCCc------cCHHHHHHHHHHhcCCCeEEEE
Confidence 123689999974211 2345566666779999999865
No 48
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.12 E-value=1.5e-10 Score=114.95 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC-----cEEEEecccccccc
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR-----NIKVINKRSDELEV 141 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-----~I~vi~~~~~~l~~ 141 (694)
|.+|||+|||+|+||..+||.|+ .|+|+|.++.|++.|++..+.+...+ ++++.+.+.+++.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga------------~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA------------QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT- 156 (282)
T ss_pred CceEEEeccCccccchhhHhhCC------------eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-
Confidence 47899999999999999999997 99999999999999999966554433 3667777766653
Q ss_pred ccCCCCCccEEEEcccccccc-CCChHHHHHHHHHhccCCCCeEEcC
Q 044245 142 GVDIDSRADILVSEILDSELL-GEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~-~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++||.|+|- ..+ +-..++.+....-++|+|+|+++-.
T Consensus 157 -----~~fDaVvcs----evleHV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 157 -----GKFDAVVCS----EVLEHVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred -----cccceeeeH----HHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence 579999982 121 1112667777777899999987643
No 49
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.12 E-value=8.7e-10 Score=115.59 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=83.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++..+ ..+|+|+|+|+.+++.|+++++.+++.++|+++++|..+.. +
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~----------~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~-~--- 186 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP----------EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL-P--- 186 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-C---
Confidence 357999999999999999998864 36999999999999999999999999889999999975421 1
Q ss_pred CCCccEEEEcccccc----------ccCCC------------hHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSE----------LLGEG------------LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~----------l~~e~------------~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++||+|++++...- ..+|. ....+.....++|+|||+++-.
T Consensus 187 ~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 247999999874321 00111 1244556667799999998744
No 50
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.8e-10 Score=117.67 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=79.1
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSR 148 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~ 148 (694)
+|||||||||.+++.+++.++ ..+|+|+|+|+.+++.|++|++.||+ .++.++.+++.+ .+.++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~----------~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-----~~~~~ 176 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP----------DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-----PLRGK 176 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc----------CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc-----ccCCc
Confidence 799999999999999999986 46999999999999999999999999 677777776554 23469
Q ss_pred ccEEEEcccccccc----------CCC------------hHHHHHHHHHhccCCCCeEEcC
Q 044245 149 ADILVSEILDSELL----------GEG------------LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 149 ~DlIvse~~~~~l~----------~e~------------~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
||+|||||.+---- +|. ....+.....++|+|||.++-.
T Consensus 177 fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 177 FDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred eeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 99999998442110 111 2335556666788998776544
No 51
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.11 E-value=7.3e-10 Score=111.61 Aligned_cols=100 Identities=22% Similarity=0.268 Sum_probs=78.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++... +.++|+++|.++.+++.|+++++.+++. +++++.+|..+...
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~---------~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~-- 142 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVG---------RDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWE-- 142 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCc--
Confidence 56789999999999999999998864 1357999999999999999999999984 89999999876421
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..++||+|++.... +.+...+.+.|+|||+++
T Consensus 143 -~~~~fD~Ii~~~~~---------~~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 143 -PLAPYDRIYVTAAG---------PKIPEALIDQLKEGGILV 174 (215)
T ss_pred -ccCCCCEEEEcCCc---------ccccHHHHHhcCcCcEEE
Confidence 12589999975211 122334556899999876
No 52
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.11 E-value=6.7e-10 Score=116.03 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=84.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|..++.+++... +..+|+++|.++.|++.|+++.+.+++. +++++.+++++++++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g---------~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~- 143 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVG---------PTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVA- 143 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC---------CCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCC-
Confidence 56789999999999999888877643 1358999999999999999999988885 899999999887642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++.||+|+++...... .-.+.++....++|+|||+++-.
T Consensus 144 --~~~fD~Vi~~~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 144 --DNSVDVIISNCVINLS---PDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred --CCceeEEEEcCcccCC---CCHHHHHHHHHHHcCCCcEEEEE
Confidence 2589999987433221 12445566667799999998753
No 53
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.11 E-value=6.1e-10 Score=117.18 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|..++.+++.|. +|+|+|.|+.|++.++++++.+++ ++++...|..+.. +
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~------------~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~----~ 181 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF------------DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS----I 181 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC------------EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc----c
Confidence 456999999999999999999864 899999999999999999999888 6888888876643 2
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++..+..++ .....+.++..+.++|+|||.++
T Consensus 182 ~~~fD~I~~~~vl~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 182 QEEYDFILSTVVLMFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred cCCccEEEEcchhhhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 4789999996544332 33356677778888999999854
No 54
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.10 E-value=1.9e-10 Score=101.22 Aligned_cols=101 Identities=24% Similarity=0.353 Sum_probs=75.3
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCc
Q 044245 70 VLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRA 149 (694)
Q Consensus 70 VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~ 149 (694)
|||+|||+|..+..+++...+. +..+++++|+|+.|++.+++..+..+. +++++++|..++.. ..++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~-------~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~---~~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAG-------PSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF---SDGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------------SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH---HSSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhc-------ccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc---cCCCe
Confidence 7999999999999999886200 126999999999999999999988776 79999999998764 23699
Q ss_pred cEEEEccccccccCCChHHHHHHHHHhccCCCC
Q 044245 150 DILVSEILDSELLGEGLIPTLQHAHDRLLVENP 182 (694)
Q Consensus 150 DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G 182 (694)
|+|++.......+....+..+++...++|+|||
T Consensus 69 D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred eEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999993221122455567778888888999987
No 55
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.09 E-value=5.5e-10 Score=108.87 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.++||+|||.|..++++|+.|. .|+|+|.|+.+++.+++.++..+++ |+....|..+..+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~------------~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~---- 91 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF------------DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF---- 91 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-------------EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-----
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC------------eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc----
Confidence 578999999999999999999985 8999999999999999999999985 8888888877653
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++++|+|+|..+..++ .....+.+...++..++|||.++
T Consensus 92 ~~~yD~I~st~v~~fL-~~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 92 PEEYDFIVSTVVFMFL-QRELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp TTTEEEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEE
T ss_pred cCCcCEEEEEEEeccC-CHHHHHHHHHHHHhhcCCcEEEE
Confidence 4689999986555444 45567888888889999999765
No 56
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.09 E-value=8.6e-10 Score=119.07 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 044245 50 SYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNI 129 (694)
Q Consensus 50 ~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I 129 (694)
+..++...+.+...+.++.+|||+|||+|.+++.+++..+ ..+|+|+|+|+.|++.|+++++.++. ++
T Consensus 235 RpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p----------~a~VtAVDiS~~ALe~AreNa~~~g~--rV 302 (423)
T PRK14966 235 RPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP----------DAFVRASDISPPALETARKNAADLGA--RV 302 (423)
T ss_pred CccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCC--cE
Confidence 3345555665555556678999999999999999988753 36899999999999999999998875 79
Q ss_pred EEEeccccccccccCCCCCccEEEEccccccc------------------c-CCC---hHHHHHHHHHhccCCCCeEE
Q 044245 130 KVINKRSDELEVGVDIDSRADILVSEILDSEL------------------L-GEG---LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 130 ~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l------------------~-~e~---~l~~l~~~~~~~L~p~G~ii 185 (694)
+++++|+.+...+ ..++||+|+|||..... . +++ .+..+.....++|+|||.++
T Consensus 303 ~fi~gDl~e~~l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 303 EFAHGSWFDTDMP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred EEEEcchhccccc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 9999998654321 12579999999854210 0 111 22345555567899999864
No 57
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.09 E-value=2.5e-10 Score=98.45 Aligned_cols=94 Identities=22% Similarity=0.228 Sum_probs=71.9
Q ss_pred EEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCcc
Q 044245 71 LDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRAD 150 (694)
Q Consensus 71 LDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~D 150 (694)
||+|||+|..+..+++.+. .+|+++|.++++++.++++.... ++.++.++.++++++. +.||
T Consensus 1 LdiG~G~G~~~~~l~~~~~-----------~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~---~sfD 62 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG-----------ASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPD---NSFD 62 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT-----------CEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-T---T-EE
T ss_pred CEecCcCCHHHHHHHhccC-----------CEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcccc---cccc
Confidence 8999999999999999832 69999999999999999876543 4568999999987643 7899
Q ss_pred EEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 151 ILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 151 lIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+|++.-.-.++ .....++..+.|+|+|||+++
T Consensus 63 ~v~~~~~~~~~---~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 63 VVFSNSVLHHL---EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp EEEEESHGGGS---SHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccceeec---cCHHHHHHHHHHHcCcCeEEe
Confidence 99985433333 445666677788999999886
No 58
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.09 E-value=1.1e-09 Score=112.20 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=84.9
Q ss_pred hhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc
Q 044245 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 62 ~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~ 141 (694)
..+.++.+|||||||+|.++..+++.... +..+|+++|.|+.|++.|+++++..+...+++++++++.+++.
T Consensus 49 ~~~~~~~~iLDlGcG~G~~~~~l~~~~~~--------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 120 (239)
T TIGR00740 49 RFVTPDSNVYDLGCSRGAATLSARRNINQ--------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI 120 (239)
T ss_pred HhCCCCCEEEEecCCCCHHHHHHHHhcCC--------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC
Confidence 34457789999999999999999887420 2368999999999999999999877766689999999988753
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+|+|++...-+++ .......++..+.+.|+|||.++-.
T Consensus 121 -----~~~d~v~~~~~l~~~-~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 -----KNASMVILNFTLQFL-PPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred -----CCCCEEeeecchhhC-CHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 358988874322222 2222345667777899999998754
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.08 E-value=1e-09 Score=107.29 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=80.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.++..+++.+. +|+++|.|+.|++.|+++++.++. +++++.+|..+..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK------------CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---- 79 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC------------EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence 3467899999999999999998764 899999999999999999998886 5888988876532
Q ss_pred CCCCccEEEEccccccccC------------------CChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLG------------------EGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~------------------e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|++++.....-. ...+..++....++|+|||+++-
T Consensus 80 -~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 80 -RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred -CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 258999999875432211 00245567777789999998754
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.06 E-value=1.1e-09 Score=109.16 Aligned_cols=108 Identities=19% Similarity=0.075 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc-cccccccC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS-DELEVGVD 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~-~~l~~~~~ 144 (694)
++.+|||||||+|.++..+++..+ ..+|+|+|.|+.|++.|+++++.++++ +++++++++ +.+... .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p----------~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~-~ 107 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP----------DINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDM-F 107 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC----------CccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHH-c
Confidence 468999999999999999988764 358999999999999999999999884 799999998 655410 1
Q ss_pred CCCCccEEEEcccccccc--C---CChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELL--G---EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~--~---e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++.||+|++........ . ....+.++..+.++|+|||.++
T Consensus 108 ~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 108 PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence 136799999853221110 0 0124566777788999999986
No 61
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.05 E-value=7e-10 Score=120.92 Aligned_cols=145 Identities=22% Similarity=0.226 Sum_probs=99.6
Q ss_pred eEeccCCCCCCCccccccccc-----hHHHhhC--CHHHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCC
Q 044245 21 VVIEENEDVPESSQEPLLATT-----SYLDMLN--DSYRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSD 92 (694)
Q Consensus 21 ~~~~~~~~~p~~~~~~~l~~~-----~~~~ml~--D~~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~ 92 (694)
..+..+||.+.++|..++... .|+.--. +..-..++...+.+. +.++.+|||||||+|.++..+++..+
T Consensus 114 ~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g--- 190 (383)
T PRK11705 114 IVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--- 190 (383)
T ss_pred HhhhhhcCCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC---
Confidence 455677999998888766652 2332111 111122333333443 56789999999999999999998753
Q ss_pred CCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHH
Q 044245 93 STTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQH 172 (694)
Q Consensus 93 ~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~ 172 (694)
.+|+|+|.|+.+++.|+++++ ++ ++++...+..++ +++||.|++..+-. .++....+.++.
T Consensus 191 --------~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l------~~~fD~Ivs~~~~e-hvg~~~~~~~l~ 251 (383)
T PRK11705 191 --------VSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL------NGQFDRIVSVGMFE-HVGPKNYRTYFE 251 (383)
T ss_pred --------CEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc------CCCCCEEEEeCchh-hCChHHHHHHHH
Confidence 589999999999999998874 44 477877776654 36899999843221 122333566777
Q ss_pred HHHhccCCCCeEEcC
Q 044245 173 AHDRLLVENPLTVPC 187 (694)
Q Consensus 173 ~~~~~L~p~G~iiP~ 187 (694)
.+.++|+|||+++-.
T Consensus 252 ~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 252 VVRRCLKPDGLFLLH 266 (383)
T ss_pred HHHHHcCCCcEEEEE
Confidence 788899999998754
No 62
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.05 E-value=1.8e-09 Score=106.70 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.++..++ .+|+++|.++.+++.|++|++.+++. +++++++|..+... ..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-----------~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~--~~ 118 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-----------AGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLA--QP 118 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-----------CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHh--hc
Confidence 578999999999999997665565 59999999999999999999999985 79999999876421 12
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHh--ccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDR--LLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~--~L~p~G~ii 185 (694)
.++||+|+++|... .+..+.+++.+.. +|.|+++++
T Consensus 119 ~~~fDlV~~DPPy~----~g~~~~~l~~l~~~~~l~~~~iv~ 156 (199)
T PRK10909 119 GTPHNVVFVDPPFR----KGLLEETINLLEDNGWLADEALIY 156 (199)
T ss_pred CCCceEEEECCCCC----CChHHHHHHHHHHCCCcCCCcEEE
Confidence 24699999998742 3445555544432 356665554
No 63
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.05 E-value=3.9e-10 Score=117.61 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
|+---++|++.. ++++.|||+||| ||||+.||++| |++|+|++- .+.|.+.++++++.||++ +++++.. ..
T Consensus 148 T~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~Di--Dp~Av~~a~~N~~~N~~~-~~~~v~~--~~ 219 (295)
T PF06325_consen 148 TRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDI--DPLAVEAARENAELNGVE-DRIEVSL--SE 219 (295)
T ss_dssp HHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEES--SCHHHHHHHHHHHHTT-T-TCEEESC--TS
T ss_pred HHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecC--CHHHHHHHHHHHHHcCCC-eeEEEEE--ec
Confidence 334456677765 467899999999 99999999997 999999998 788889999999999998 8888841 11
Q ss_pred cccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 469 CLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
+...+++|+||+.... ..|. -....+.++|+|||.++-+
T Consensus 220 -----~~~~~~~dlvvANI~~---------~vL~--~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 220 -----DLVEGKFDLVVANILA---------DVLL--ELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp -----CTCCS-EEEEEEES-H---------HHHH--HHHHHCHHHEEEEEEEEEE
T ss_pred -----ccccccCCEEEECCCH---------HHHH--HHHHHHHHhhCCCCEEEEc
Confidence 1223889999998632 2221 2223344579999987764
No 64
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.05 E-value=1.6e-09 Score=114.66 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=82.4
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.+|||+|||+|.+++.+++..+ ..+|+++|+|+.+++.|+++++.+++.++|+++++|+.+.. + ++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p----------~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l-~---~~ 200 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP----------DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL-P---GR 200 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC----------CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-C---CC
Confidence 6899999999999999998864 36899999999999999999999999888999999975521 1 24
Q ss_pred CccEEEEccccccc----------cCCC------------hHHHHHHHHHhccCCCCeEEcC
Q 044245 148 RADILVSEILDSEL----------LGEG------------LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 148 ~~DlIvse~~~~~l----------~~e~------------~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+||+|++++..... .+|. ....+.....++|+|||.++-.
T Consensus 201 ~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 201 RYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 79999998743210 0111 2345566667799999998743
No 65
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.04 E-value=2.8e-09 Score=112.02 Aligned_cols=106 Identities=19% Similarity=0.209 Sum_probs=82.0
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.+|||+|||+|.+++.+++..+ ..+|+|+|+|+.+++.|+++++.+++.++++++.+|+.+.. ...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~----------~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~----~~~ 181 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP----------NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL----AGQ 181 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC----cCC
Confidence 6899999999999999999864 36899999999999999999999999878999999976521 113
Q ss_pred CccEEEEcccccc----------ccCCC------------hHHHHHHHHHhccCCCCeEEcC
Q 044245 148 RADILVSEILDSE----------LLGEG------------LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 148 ~~DlIvse~~~~~----------l~~e~------------~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+||+|++++...- ..+|. .+..+.....++|+|||.++-.
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 7999999874321 11121 2345566666799999987643
No 66
>PRK14967 putative methyltransferase; Provisional
Probab=99.03 E-value=2.7e-09 Score=108.06 Aligned_cols=105 Identities=23% Similarity=0.202 Sum_probs=80.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++.+. .+|+++|.|+.+++.|+++++.+++ +++++++|+.+..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~-----------~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~--- 97 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGA-----------GSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAV--- 97 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCC-----------CeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhc---
Confidence 55678999999999999999998754 5899999999999999999998887 5889998876532
Q ss_pred CCCCCccEEEEccccccccC----------------CC--hHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLG----------------EG--LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~----------------e~--~l~~l~~~~~~~L~p~G~ii 185 (694)
..++||+|++++....... ++ .+..+.....++|+|||+++
T Consensus 98 -~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 98 -EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred -cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEE
Confidence 1258999999864321100 00 13445555667999999988
No 67
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.03 E-value=2.2e-09 Score=111.40 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=83.5
Q ss_pred HHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 55 AYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 55 ~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
....++... +.++.+|||||||+|..+..+++... .+|+++|.++.|++.|+++... .++|.++.
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~-----------~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~ 105 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYG-----------AHVHGVDICEKMVNIAKLRNSD---KNKIEFEA 105 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcC-----------CEEEEEECCHHHHHHHHHHcCc---CCceEEEE
Confidence 345555554 56789999999999999988887543 5999999999999999987643 35899999
Q ss_pred ccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++..+.+++ +++||+|++...-.+ +.......++..+.++|+|||.++-
T Consensus 106 ~D~~~~~~~---~~~FD~V~s~~~l~h-~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 106 NDILKKDFP---ENTFDMIYSRDAILH-LSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred CCcccCCCC---CCCeEEEEEhhhHHh-CCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 998766542 268999998421111 1111355677777789999999874
No 68
>PRK04266 fibrillarin; Provisional
Probab=99.02 E-value=2.4e-09 Score=108.10 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=77.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.+++.+++..+ .++|+|+|.++.|++.+.++++.. .+|.++.+|..+.....
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~----------~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~ 136 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE----------EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYA 136 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC----------CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhh
Confidence 56789999999999999999998753 258999999999999887776643 47889999986521111
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++++||+|+++.-. ......++....++|+|||.++-
T Consensus 137 ~l~~~~D~i~~d~~~-----p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 137 HVVEKVDVIYQDVAQ-----PNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred hccccCCEEEECCCC-----hhHHHHHHHHHHHhcCCCcEEEE
Confidence 234679999976321 11123445666779999998764
No 69
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.01 E-value=2.3e-09 Score=114.95 Aligned_cols=102 Identities=25% Similarity=0.242 Sum_probs=79.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+|||+|||+|.+++.+++.++ ..+|+++|.|+.|++.|+++++.|++. .+++..|..+ ..+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p----------~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~-----~~~ 259 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP----------KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFS-----DIK 259 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccc-----ccC
Confidence 45899999999999999999875 358999999999999999999999985 4566666543 134
Q ss_pred CCccEEEEccccccccCC--ChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGE--GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e--~~l~~l~~~~~~~L~p~G~ii 185 (694)
++||+|+|++..+..... .....++....++|+|||.++
T Consensus 260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~ 300 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELR 300 (342)
T ss_pred CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEE
Confidence 789999999865432222 234566777778999999875
No 70
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.01 E-value=2.4e-09 Score=108.47 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=81.9
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
++|||||||+|.++..+++..+ ..+|+++|.|+.+++.|+++++..|+.++++++..|..+.+. ++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~----------~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~----~~ 66 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP----------HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF----PD 66 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC----CC
Confidence 4799999999999999998863 358999999999999999999999999999999998865432 35
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+||+|++.-+-... ...+.++..+.++|+|||.++-
T Consensus 67 ~fD~I~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 67 TYDLVFGFEVIHHI---KDKMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CCCEeehHHHHHhC---CCHHHHHHHHHHHcCCCCEEEE
Confidence 89999974222211 1256677778889999999884
No 71
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.00 E-value=2.3e-09 Score=105.42 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=80.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-cC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG-VD 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~-~~ 144 (694)
++.+|||++||+|.+++.++++|+ .+|+++|.++.+++.+++|++.+++.++++++++|..+.... ..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-----------~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~ 117 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-----------KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK 117 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-----------CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc
Confidence 588999999999999999999987 689999999999999999999999987899999998553210 01
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHH--HhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAH--DRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~--~~~L~p~G~iiP 186 (694)
....+|+|+.+|.... ...+.+...+ ..+|+++|.++-
T Consensus 118 ~~~~~dvv~~DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 118 KPTFDNVIYLDPPFFN----GALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred cCCCceEEEECcCCCC----CcHHHHHHHHHHCCCCCCCeEEEE
Confidence 1124899999886642 2333333322 347888887663
No 72
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.00 E-value=3.8e-09 Score=112.62 Aligned_cols=105 Identities=17% Similarity=0.091 Sum_probs=79.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++++|||||||+|.++..+++.|+ .+|+|+|.|+.|+..++...+..+...+|.++.+++++++.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~-----------~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--- 186 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA-----------KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--- 186 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-----------CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---
Confidence 3578999999999999999999886 57999999999987665544443434589999999988753
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+++||+|+|..+ +.+-.....++..+.+.|+|||.++-.
T Consensus 187 -~~~FD~V~s~~v---l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 187 -LKAFDTVFSMGV---LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred -cCCcCEEEECCh---hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 468999998422 212223455666777899999998754
No 73
>PRK04457 spermidine synthase; Provisional
Probab=99.00 E-value=2.3e-09 Score=111.02 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=89.2
Q ss_pred HHHHHHHhh---ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 55 AYRLAIDKM---VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 55 ~y~~ai~~~---~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
.|.+++... ..++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|+++...++..+++++
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p----------~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v 121 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP----------DTRQTAVEINPQVIAVARNHFELPENGERFEV 121 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC----------CCeEEEEECCHHHHHHHHHHcCCCCCCCceEE
Confidence 455555332 23468999999999999999988764 46899999999999999998876665569999
Q ss_pred EeccccccccccCCCCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcC
Q 044245 132 INKRSDELEVGVDIDSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+.+|..+... ..+++||+|+.+.+......+. ....+.....+.|+|||+++-+
T Consensus 122 ~~~Da~~~l~--~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 122 IEADGAEYIA--VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EECCHHHHHH--hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 9999876531 2346899999986543222221 2245666677799999998753
No 74
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.00 E-value=3.9e-09 Score=111.48 Aligned_cols=112 Identities=12% Similarity=-0.000 Sum_probs=80.5
Q ss_pred HHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 58 LAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 58 ~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
+.+.+. ..++++|||||||+|.++..+++.|+ .+|+|+|.|+.|+..++...+..+...++.++..+.
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-----------~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i 180 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-----------KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGI 180 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-----------CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCH
Confidence 344442 45689999999999999998888876 589999999999877654433323334788888888
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++++. ..+||+|+|.-+- .+-.....++..+++.|+|||.++-.
T Consensus 181 e~lp~----~~~FD~V~s~gvL---~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 181 EQLHE----LYAFDTVFSMGVL---YHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred HHCCC----CCCcCEEEEcchh---hccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 87753 2479999985322 22223445666777899999998754
No 75
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.00 E-value=6.7e-09 Score=103.04 Aligned_cols=105 Identities=25% Similarity=0.244 Sum_probs=79.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.+++.+++..+ ..+|+++|.|+.|++.|+++++.+++. +++++.++..+.. .
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~----------~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~--~ 104 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCP----------KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECL--A 104 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC----------CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHH--h
Confidence 34678999999999999999987753 369999999999999999999999985 7999999876521 1
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
.+...+|.++.+. ...++.++....++|+|||.++-..
T Consensus 105 ~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 105 QLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred hCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2223567766531 1234566666677899999987553
No 76
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.6e-09 Score=109.71 Aligned_cols=102 Identities=22% Similarity=0.257 Sum_probs=79.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||+|||.|.+++.+++..+ ..+++-+|.|..+++.||+|++.|+++.. .++..+..+ ...
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p----------~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~-----~v~ 222 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP----------QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYE-----PVE 222 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC----------CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccc-----ccc
Confidence 45999999999999999999985 57999999999999999999999999743 666666544 223
Q ss_pred CCccEEEEccccccccC--CChHHHHHHHHHhccCCCCeE
Q 044245 147 SRADILVSEILDSELLG--EGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~--e~~l~~l~~~~~~~L~p~G~i 184 (694)
++||+|||||.-+.... ...-..++....++|++||.+
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL 262 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGEL 262 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEE
Confidence 58999999996643221 112236666677899999965
No 77
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.97 E-value=2.4e-09 Score=116.82 Aligned_cols=116 Identities=11% Similarity=0.080 Sum_probs=87.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~~~~l~~~~ 143 (694)
.++++|||+|||+|.+++.++..++ .+|+++|.|+.+++.|++|++.||+. ++++++++|+.++....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga-----------~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~ 287 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGC-----------SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTY 287 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCC-----------CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHH
Confidence 4589999999999999998877654 69999999999999999999999996 58999999987753100
Q ss_pred -CCCCCccEEEEccccccccCCC-------hHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 -DIDSRADILVSEILDSELLGEG-------LIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~~l~~e~-------~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
...++||+|++++.... .... .+..+.....++|+|||.++-++++-+
T Consensus 288 ~~~~~~fDlVilDPP~f~-~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~ 343 (396)
T PRK15128 288 RDRGEKFDVIVMDPPKFV-ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL 343 (396)
T ss_pred HhcCCCCCEEEECCCCCC-CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence 01257999999987532 1111 123344455679999999987665544
No 78
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.97 E-value=2.5e-09 Score=125.56 Aligned_cols=117 Identities=18% Similarity=0.115 Sum_probs=89.2
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKR 135 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~ 135 (694)
++.+.+.. ++++|||+|||||.+++.+++.|+ .+|+++|.|+.+++.|++|++.||+. ++++++++|
T Consensus 530 R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga-----------~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D 597 (702)
T PRK11783 530 RRMIGQMA-KGKDFLNLFAYTGTASVHAALGGA-----------KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQAD 597 (702)
T ss_pred HHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCC-----------CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEcc
Confidence 34454433 588999999999999999999876 58999999999999999999999997 689999999
Q ss_pred ccccccccCCCCCccEEEEccccccccC--------CChHHHHHHHHHhccCCCCeEEcC
Q 044245 136 SDELEVGVDIDSRADILVSEILDSELLG--------EGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 136 ~~~l~~~~~l~~~~DlIvse~~~~~l~~--------e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+... .+.++||+||+++.....-. ......+.....++|+|||.++-.
T Consensus 598 ~~~~l~--~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 598 CLAWLK--EAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHH--HcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 876421 12468999999986532110 112334555566799999988754
No 79
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4.2e-09 Score=100.24 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.|+.|+|+|||||.|++.++-.|+ .+|+|+|+++++++.+++|+.+ +.++|.++.+|.+++.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-----------~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~----- 106 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-----------SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR----- 106 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-----------cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC-----
Confidence 578999999999999999999997 7999999999999999999998 4458999999998864
Q ss_pred CCCccEEEEcc-ccccccCCChHHHHHHHHH
Q 044245 146 DSRADILVSEI-LDSELLGEGLIPTLQHAHD 175 (694)
Q Consensus 146 ~~~~DlIvse~-~~~~l~~e~~l~~l~~~~~ 175 (694)
.++|.++.|| +|.-.-+ .-.+.+..+++
T Consensus 107 -~~~dtvimNPPFG~~~rh-aDr~Fl~~Ale 135 (198)
T COG2263 107 -GKFDTVIMNPPFGSQRRH-ADRPFLLKALE 135 (198)
T ss_pred -CccceEEECCCCcccccc-CCHHHHHHHHH
Confidence 6899999887 3433212 23455555554
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.96 E-value=3.3e-09 Score=105.01 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
...+|||||||+|.++..+++..+ ..+|+|+|.++.|++.|+++++.+++. +|+++++++.++......
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p----------~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~ 84 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP----------DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFP 84 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC----------CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCC
Confidence 457999999999999999998865 468999999999999999999999986 899999999875411111
Q ss_pred CCCccEEEEcccccccc-----CCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELL-----GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~-----~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+.+|.|+.+..+...- ..-..+.++..+.++|+|||.++-
T Consensus 85 ~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 85 DGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred CCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 24799998864322110 011235677777889999999753
No 81
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.95 E-value=4.3e-09 Score=112.98 Aligned_cols=106 Identities=20% Similarity=0.169 Sum_probs=85.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||||.+++.++..++ +|+|+|.|+.|++.|++|++.+|+.+ +.++.+|..+++..
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~------------~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~- 245 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGA------------KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS- 245 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCC------------eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc-
Confidence 56788999999999999998888764 89999999999999999999999975 89999999887642
Q ss_pred CCCCCccEEEEccccccccC---C---ChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLG---E---GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~---e---~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++||+|++++....-.. + .....++....+.|+|||+++
T Consensus 246 --~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv 291 (329)
T TIGR01177 246 --SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIV 291 (329)
T ss_pred --cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEE
Confidence 368999999975432111 1 224566777778999999764
No 82
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.95 E-value=4.8e-09 Score=108.54 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=77.3
Q ss_pred HHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 044245 57 RLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR 135 (694)
Q Consensus 57 ~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~ 135 (694)
...+... ..++.+|||||||+|.++..+++..+ ..+|+|+|.|+.|++.|++. +++++.++
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p----------~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d 80 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWP----------GAVIEALDSSPEMVAAARER--------GVDARTGD 80 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHhc--------CCcEEEcC
Confidence 3444443 34678999999999999999998853 35899999999999998752 47788899
Q ss_pred ccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 136 SDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 136 ~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++.. .++||+|++...-.++ . ....++..+.+.|+|||.++-
T Consensus 81 ~~~~~~----~~~fD~v~~~~~l~~~-~--d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 81 VRDWKP----KPDTDVVVSNAALQWV-P--EHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred hhhCCC----CCCceEEEEehhhhhC-C--CHHHHHHHHHHhCCCCcEEEE
Confidence 877631 2589999996433322 1 245566666779999998763
No 83
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.95 E-value=6.2e-09 Score=106.00 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=90.0
Q ss_pred HHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 044245 56 YRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR 135 (694)
Q Consensus 56 y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~ 135 (694)
+...+.+. .+.++|||||||+|..++.++++.+ +.++|+++|.++++++.|+++++.+|+.++|+++.++
T Consensus 59 ~L~~l~~~-~~~~~vLEiGt~~G~s~l~la~~~~---------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gd 128 (234)
T PLN02781 59 FLSMLVKI-MNAKNTLEIGVFTGYSLLTTALALP---------EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSD 128 (234)
T ss_pred HHHHHHHH-hCCCEEEEecCcccHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcc
Confidence 34444443 3478999999999998888887743 2479999999999999999999999999999999999
Q ss_pred ccccccc--c-CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEE
Q 044245 136 SDELEVG--V-DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQ 194 (694)
Q Consensus 136 ~~~l~~~--~-~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~ 194 (694)
..+.... . ...++||+|+.+.- ......+.....++|+|||.++-+..-..+.
T Consensus 129 a~~~L~~l~~~~~~~~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~ 184 (234)
T PLN02781 129 ALSALDQLLNNDPKPEFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGF 184 (234)
T ss_pred HHHHHHHHHhCCCCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCe
Confidence 8764210 0 01358999997521 1223445555567999999998765544443
No 84
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.94 E-value=7e-09 Score=106.76 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||+|||+|.+++.+++..+ ..+|+++|.|+.+++.|++|++.|+ ++++++|+.+... ....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~----------~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~-~~~~ 151 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD----------GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALP-TALR 151 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcc-hhcC
Confidence 35899999999999999988754 2589999999999999999999876 3678888765321 1123
Q ss_pred CCccEEEEccccccc-----c------CC---------C---hHHHHHHHHHhccCCCCeEEcC
Q 044245 147 SRADILVSEILDSEL-----L------GE---------G---LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 147 ~~~DlIvse~~~~~l-----~------~e---------~---~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++||+|++|+...-. + +| + .+..+.....++|+|||+++-.
T Consensus 152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 579999999864310 0 01 1 2345666667899999988743
No 85
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.93 E-value=3.4e-09 Score=102.21 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=80.4
Q ss_pred HHHHHHHhhccCC--CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 55 AYRLAIDKMVTKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 55 ~y~~ai~~~~~~~--~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
+|...+...+..+ .++||+|||.|.++..+|.++. +++++|.++.+++.|++++. +.+ +|+++
T Consensus 30 K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd------------~LlavDis~~Al~~Ar~Rl~--~~~-~V~~~ 94 (201)
T PF05401_consen 30 KYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCD------------RLLAVDISPRALARARERLA--GLP-HVEWI 94 (201)
T ss_dssp HHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEE------------EEEEEES-HHHHHHHHHHTT--T-S-SEEEE
T ss_pred HHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhC------------ceEEEeCCHHHHHHHHHhcC--CCC-CeEEE
Confidence 4554454444443 6899999999999999999874 99999999999999998875 444 89999
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCce
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
..+..+.. .+++||+||.-=+.+++-....+..+...+...|+|||.+|-..+
T Consensus 95 ~~dvp~~~----P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 95 QADVPEFW----PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ES-TTT-------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECcCCCCC----CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99987753 237999886543555553334566666667779999999987543
No 86
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.92 E-value=4.7e-09 Score=106.67 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=78.9
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
-+.+|.+|||.|+|||.++..++++.+ +.++|+..|..++.++.|+++++.+|+.++|++.++|+.+-.++
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~---------p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVG---------PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHT---------TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhC---------CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 378999999999999999999999876 46899999999999999999999999999999999998754433
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhcc-CCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLL-VENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L-~p~G~ii 185 (694)
.++...+|.|+.++... ...+....+.| ++||+++
T Consensus 108 ~~~~~~~DavfLDlp~P--------w~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 108 EELESDFDAVFLDLPDP--------WEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp TT-TTSEEEEEEESSSG--------GGGHHHHHHHE-EEEEEEE
T ss_pred ccccCcccEEEEeCCCH--------HHHHHHHHHHHhcCCceEE
Confidence 34456899999886552 22223334467 7888764
No 87
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=9.9e-09 Score=102.32 Aligned_cols=83 Identities=25% Similarity=0.330 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc-c-c
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV-G-V 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~-~-~ 143 (694)
++.++||+|||||.+|+.++..-+ .+.|+|+|.|+.++.+|.+|++.+++.++|.+++-+++.-.. + .
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~----------~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~ 217 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP----------QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP 217 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC----------CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc
Confidence 456899999999999999887665 579999999999999999999999999999999765443211 1 1
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
.+.++.|+++||+.+
T Consensus 218 l~~~~~dllvsNPPY 232 (328)
T KOG2904|consen 218 LLEGKIDLLVSNPPY 232 (328)
T ss_pred cccCceeEEecCCCc
Confidence 344799999999854
No 88
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.92 E-value=1.1e-08 Score=101.06 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=84.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCc--EEEEeccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN--IKVINKRSDELEVG 142 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~--I~vi~~~~~~l~~~ 142 (694)
.++.+|||++||||-+++.+.+....+. .....+|+.+|+|++|+..+++++++.++.+. +.++++|+++++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~----~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQF----GDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhcccc----CCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC
Confidence 3568999999999999999998864110 01236899999999999999999988888665 99999999999986
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+ ..+|+.... .++-+-..++..+....|.|+|||++.
T Consensus 175 d---~s~D~yTia---fGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 175 D---DSFDAYTIA---FGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred C---CcceeEEEe---cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 5 589987652 222232234444445556999999876
No 89
>PRK06922 hypothetical protein; Provisional
Probab=98.91 E-value=8.4e-09 Score=116.28 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++..+ ..+|+|+|.|+.|++.|+++...++. ++.++.+|..+++. .-.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P----------~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~-~fe 484 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE----------DKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSS-SFE 484 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCcc-ccC
Confidence 578999999999999888887754 46999999999999999988766553 68889999877641 011
Q ss_pred CCCccEEEEcccccccc----------CCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELL----------GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~----------~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++..+.+.++ ....+..++..+.+.|+|||.++-
T Consensus 485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 36899999865332221 112344566667789999999875
No 90
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.91 E-value=4.2e-09 Score=104.87 Aligned_cols=100 Identities=20% Similarity=0.227 Sum_probs=73.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||||||||.++..+++..+ +.++|+++|.++.+++.|+++++..++. +|+++.+|...-..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg---------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~-- 137 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVG---------PVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP-- 137 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHS---------TTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG--
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcC---------ccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc--
Confidence 77899999999999999999999865 2468999999999999999999999986 89999999654321
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...+||.|++. ... +.... .+-..|++||+++
T Consensus 138 -~~apfD~I~v~----~a~-~~ip~----~l~~qL~~gGrLV 169 (209)
T PF01135_consen 138 -EEAPFDRIIVT----AAV-PEIPE----ALLEQLKPGGRLV 169 (209)
T ss_dssp -GG-SEEEEEES----SBB-SS--H----HHHHTEEEEEEEE
T ss_pred -cCCCcCEEEEe----ecc-chHHH----HHHHhcCCCcEEE
Confidence 12589999974 111 22222 3445789999876
No 91
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=1.8e-08 Score=101.23 Aligned_cols=97 Identities=21% Similarity=0.177 Sum_probs=75.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++.+. +|+++|.++.+++.|+++++.+++. +++++.++..+...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~------------~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-- 140 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR------------RVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWP-- 140 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC------------EEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCC--
Confidence 45678999999999999998888753 8999999999999999999999886 69999998754211
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..++||+|++... .+.+...+.+.|+|||+++
T Consensus 141 -~~~~fD~I~~~~~---------~~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 141 -AYAPFDRILVTAA---------APEIPRALLEQLKEGGILV 172 (212)
T ss_pred -cCCCcCEEEEccC---------chhhhHHHHHhcCCCcEEE
Confidence 1268999997421 1222334556899999876
No 92
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.91 E-value=6.9e-10 Score=97.20 Aligned_cols=99 Identities=22% Similarity=0.186 Sum_probs=60.2
Q ss_pred EEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCcc
Q 044245 71 LDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRAD 150 (694)
Q Consensus 71 LDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~D 150 (694)
||||||+|.++..+++... ..+++++|+|+.|++.|+++....+.. +...+.....+... ....++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~----------~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~fD 68 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP----------DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFD-YDPPESFD 68 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----------EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS----CCC----S
T ss_pred CEeCccChHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhh-cccccccc
Confidence 7999999999999998853 469999999999999999888887654 44444444333321 11225899
Q ss_pred EEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 151 ILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 151 lIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
+|++.-+-+++ ..+..++..+.++|+|||++
T Consensus 69 ~V~~~~vl~~l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 69 LVVASNVLHHL---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEE-TTS-----S-HHHHHHHHTTT-TSS-EE
T ss_pred eehhhhhHhhh---hhHHHHHHHHHHHcCCCCCC
Confidence 99985333333 34556677778899999985
No 93
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.91 E-value=8.8e-09 Score=116.30 Aligned_cols=106 Identities=17% Similarity=0.181 Sum_probs=80.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||+|||+|.+++.+++..+ ..+|+++|+|+.+++.|+++++.+++.++|+++++|+.+.. ..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p----------~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~----~~ 204 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP----------NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI----EK 204 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC----------CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC----cC
Confidence 46899999999999999887753 36999999999999999999999999889999999975421 12
Q ss_pred CCccEEEEcccccc-------------------ccC-CC---hHHHHHHHHHhccCCCCeEEc
Q 044245 147 SRADILVSEILDSE-------------------LLG-EG---LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 147 ~~~DlIvse~~~~~-------------------l~~-e~---~l~~l~~~~~~~L~p~G~iiP 186 (694)
++||+|+||+.... +.+ +. .+..+.....++|+|||.++-
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 58999999874321 111 11 123455566679999998764
No 94
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.90 E-value=1.1e-08 Score=115.65 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=80.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++... .+|+|+|+|+.|++.|+++.. +...+++++.+|..+.+++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~-----------~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~- 329 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFD-----------VHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYP- 329 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcC-----------CEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCC-
Confidence 34678999999999999998888643 589999999999999998765 4556899999998876542
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+++||+|+|.-. +.+-.-.+.++..+.++|+|||.++-.
T Consensus 330 --~~~fD~I~s~~~---l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 330 --DNSFDVIYSRDT---ILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred --CCCEEEEEECCc---ccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 258999998422 112223556777778899999998743
No 95
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.2e-08 Score=101.86 Aligned_cols=101 Identities=23% Similarity=0.283 Sum_probs=86.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||.|+|||.+++.+|++-+ +.++|+..|..++.++.|++|++..++.++|++..+|..+...
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg---------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-- 160 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVG---------PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-- 160 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhC---------CCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--
Confidence 67899999999999999999999765 3589999999999999999999999999889999999888653
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++.||.|+.++.+ ....++.....|+|||.++
T Consensus 161 --~~~vDav~LDmp~--------PW~~le~~~~~Lkpgg~~~ 192 (256)
T COG2519 161 --EEDVDAVFLDLPD--------PWNVLEHVSDALKPGGVVV 192 (256)
T ss_pred --ccccCEEEEcCCC--------hHHHHHHHHHHhCCCcEEE
Confidence 2489999987655 4455556667999998764
No 96
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.89 E-value=2e-08 Score=103.42 Aligned_cols=106 Identities=21% Similarity=0.213 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.+.+|||+|||+|.++..+++..+ ..+|+++|.++.+++.|+++++.+++. ++++++++..+.. .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~----------~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~----~ 151 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP----------DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPL----P 151 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccC----c
Confidence 456999999999999999998754 358999999999999999999999986 7999999986621 1
Q ss_pred CCCccEEEEccccccc-----cC------CC------------hHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSEL-----LG------EG------------LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l-----~~------e~------------~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|++++..... +. |. ....+.....++|+|||.++-
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 3689999998754321 00 10 012455566779999998764
No 97
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.88 E-value=9.9e-09 Score=105.91 Aligned_cols=96 Identities=21% Similarity=0.180 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++.+. +|+++|.|+.|++.|+++.. .+.++.+|.++++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~------------~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~--- 100 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS------------QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLA--- 100 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC------------eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCC---
Confidence 357999999999999998887653 89999999999999987532 245788888877643
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|+++..- ........++..+.++|+|||.++
T Consensus 101 ~~~fD~V~s~~~l---~~~~d~~~~l~~~~~~Lk~gG~l~ 137 (251)
T PRK10258 101 TATFDLAWSNLAV---QWCGNLSTALRELYRVVRPGGVVA 137 (251)
T ss_pred CCcEEEEEECchh---hhcCCHHHHHHHHHHHcCCCeEEE
Confidence 2589999986322 122235566667778999999887
No 98
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=9e-09 Score=100.64 Aligned_cols=99 Identities=20% Similarity=0.261 Sum_probs=77.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc-cccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE-LEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~-l~~~ 142 (694)
+.++.+|||||||||..+..+|+... +|+++|..+..++.|+++.+..|+. ||.++++|... ++
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~------------~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~-- 134 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG------------RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP-- 134 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC------------eEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC--
Confidence 57789999999999999999999974 9999999999999999999999997 59999999654 22
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE-cCc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV-PCR 188 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii-P~~ 188 (694)
...+||.|+..- . .+...+.+ -..|++||+++ |-.
T Consensus 135 --~~aPyD~I~Vta----a-a~~vP~~L----l~QL~~gGrlv~PvG 170 (209)
T COG2518 135 --EEAPYDRIIVTA----A-APEVPEAL----LDQLKPGGRLVIPVG 170 (209)
T ss_pred --CCCCcCEEEEee----c-cCCCCHHH----HHhcccCCEEEEEEc
Confidence 125899998631 1 12223333 34689999876 443
No 99
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.87 E-value=2e-08 Score=104.08 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=76.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ ..+|+++|.|+.|++.|+++. .++.++.+|..++..
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~----------~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-- 90 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWP----------AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-- 90 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--
Confidence 34678999999999999999998753 369999999999999998753 268888888876532
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-..+ . -...++..+.+.|+|||.++-
T Consensus 91 --~~~fD~v~~~~~l~~~--~-d~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 91 --PQALDLIFANASLQWL--P-DHLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred --CCCccEEEEccChhhC--C-CHHHHHHHHHHhcCCCcEEEE
Confidence 2589999986433222 1 244566667779999998765
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=98.87 E-value=1.7e-08 Score=99.01 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=80.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCc-EEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN-IKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~-I~vi~~~~~~l~~~~ 143 (694)
.++++|||+|||+|.+++.+++.+ .+|+++|.++.+++.++++++.+++.++ +.++.+|+.+..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--- 86 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG------------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF--- 86 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc------------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---
Confidence 467899999999999999999885 4999999999999999999999988644 888888875532
Q ss_pred CCCCCccEEEEccccccc---------------cC---CChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSEL---------------LG---EGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l---------------~~---e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||+|++++..... .+ ...++.+...+.++|+|||.++.
T Consensus 87 -~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 87 -RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred -cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 12479999987543210 00 11234566666789999997763
No 101
>PHA03412 putative methyltransferase; Provisional
Probab=98.86 E-value=9.9e-09 Score=102.52 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=77.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||+|||+|.+++.+++..... +..+|+++|+++.+++.|+++.. ++.++++|..... .+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~-------~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~----~~ 112 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYA-------KPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE----FD 112 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccC-------CCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc----cc
Confidence 6799999999999999998864210 13589999999999999997642 5788998887643 23
Q ss_pred CCccEEEEccccccccC-------CC--hHHHHHHHHHhccCCCCeEEcCce
Q 044245 147 SRADILVSEILDSELLG-------EG--LIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~-------e~--~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
++||+||+||...-+-. .+ ....++....+++++|+.|+|...
T Consensus 113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 68999999996652211 11 233455555568888888888754
No 102
>PLN03075 nicotianamine synthase; Provisional
Probab=98.85 E-value=3.6e-08 Score=102.30 Aligned_cols=107 Identities=9% Similarity=0.094 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCCCHH-HHHHH-HHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH-cCCCCcEEEEeccccccccc
Q 044245 66 KSCHVLDIGAGTGLL-SMMAA-RAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV-NGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~l-sl~aa-~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~-ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+++|+|||||.|.+ ++.++ ++.+ .++++++|.++.+++.|++.++. .++.++|++..+|..++..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p----------~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP----------TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC----------CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-
Confidence 578999999997744 44444 3433 57999999999999999999965 8898899999999887531
Q ss_pred cCCCCCccEEEEccccccccC--CChHHHHHHHHHhccCCCCeEEcCce
Q 044245 143 VDIDSRADILVSEILDSELLG--EGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~--e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
. .++||+|++. .+++ ......++..+.+.|+|||.++-..+
T Consensus 192 -~-l~~FDlVF~~----ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 192 -S-LKEYDVVFLA----ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -c-cCCcCEEEEe----cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 1 3689999985 2222 23455677777789999999987653
No 103
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.85 E-value=2.5e-08 Score=105.79 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=76.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ ..++|+++|.++.+++.|+++++.+|.. ++.++.+|..+....
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~---------~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~- 146 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVG---------EKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE- 146 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc-
Confidence 56789999999999999999998764 1247999999999999999999999984 799999987654321
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++||+|++. .. .+.+...+.+.|+|||+++
T Consensus 147 --~~~fD~Ii~~----~g-----~~~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 147 --FAPYDVIFVT----VG-----VDEVPETWFTQLKEGGRVI 177 (322)
T ss_pred --cCCccEEEEC----Cc-----hHHhHHHHHHhcCCCCEEE
Confidence 1579999974 11 2222334456899999865
No 104
>PRK05785 hypothetical protein; Provisional
Probab=98.84 E-value=3.3e-08 Score=100.27 Aligned_cols=100 Identities=20% Similarity=0.155 Sum_probs=71.9
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
.+.+.....++.+|||||||||.++..+++.+. .+|+|+|.|++|++.|++. ...++++.
T Consensus 42 ~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~-----------~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~ 101 (226)
T PRK05785 42 VKTILKYCGRPKKVLDVAAGKGELSYHFKKVFK-----------YYVVALDYAENMLKMNLVA---------DDKVVGSF 101 (226)
T ss_pred HHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcC-----------CEEEEECCCHHHHHHHHhc---------cceEEech
Confidence 334444344578999999999999999988842 4899999999999998753 12467888
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCC
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENP 182 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G 182 (694)
+++++++ ++||+|++.. .+-+-.-.+..+....+.|+|.+
T Consensus 102 ~~lp~~d---~sfD~v~~~~---~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 102 EALPFRD---KSFDVVMSSF---ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hhCCCCC---CCEEEEEecC---hhhccCCHHHHHHHHHHHhcCce
Confidence 8876533 6899999842 12122235566777778999843
No 105
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.84 E-value=2.5e-08 Score=100.68 Aligned_cols=102 Identities=23% Similarity=0.187 Sum_probs=75.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++.+. +|+|+|.|+.|++.|+++...++..+++.+..+++.++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~------------~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 117 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA------------IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---- 117 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC------------EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----
Confidence 4578999999999999999988753 899999999999999999988887678999999987653
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++||+|++.-+-.+ +.+..+..++..+.+++++++.+.
T Consensus 118 --~~fD~ii~~~~l~~-~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 118 --GEFDIVVCMDVLIH-YPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred --CCcCEEEEhhHHHh-CCHHHHHHHHHHHHHHhCCCEEEE
Confidence 58999987311111 112223444555555666655443
No 106
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.84 E-value=2.8e-08 Score=101.32 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=82.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.++..+++.++ ...+++++|.++.+++.+++++..+++..+++++.++..++..+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~---------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-- 118 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVG---------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP-- 118 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcC---------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC--
Confidence 3568999999999999999998873 13699999999999999999988777777899999998876532
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++.. .+..-.....++..+.++|+|||.++
T Consensus 119 -~~~~D~I~~~~---~l~~~~~~~~~l~~~~~~L~~gG~li 155 (239)
T PRK00216 119 -DNSFDAVTIAF---GLRNVPDIDKALREMYRVLKPGGRLV 155 (239)
T ss_pred -CCCccEEEEec---ccccCCCHHHHHHHHHHhccCCcEEE
Confidence 36899998732 12122235566677778999999876
No 107
>PLN02476 O-methyltransferase
Probab=98.84 E-value=2.8e-08 Score=102.64 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=87.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc---
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG--- 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~--- 142 (694)
+.++|||||||+|..++++|+..+ +.++|+++|.+++.++.|+++++.+|+.++|+++.++..+....
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~---------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~ 188 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLP---------ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQ 188 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence 468999999999999999998754 24689999999999999999999999999999999998764210
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQ 194 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~ 194 (694)
....++||+|+.+.- .+..+.+.+...++|+|||.++-+..-..+.
T Consensus 189 ~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~ 234 (278)
T PLN02476 189 NGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVLWHGR 234 (278)
T ss_pred cccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCccCCc
Confidence 011358999997532 2223444445556999999998776544433
No 108
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.84 E-value=8.9e-09 Score=101.51 Aligned_cols=107 Identities=25% Similarity=0.290 Sum_probs=75.0
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
++.|.+.+.++.+|+|+.||.|.+++.+|+.+. ..+|+|+|.||.+++.++++++.|++.++|.++++|.
T Consensus 92 r~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~----------~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~ 161 (200)
T PF02475_consen 92 RRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGK----------AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA 161 (200)
T ss_dssp HHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-----------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G
T ss_pred HHHHHhcCCcceEEEEccCCccHHHHHHhhhcC----------ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH
Confidence 344555678899999999999999999999543 3589999999999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
.++.. ...+|-|+.++.... . .++.+...++++||++
T Consensus 162 ~~~~~----~~~~drvim~lp~~~------~-~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 162 REFLP----EGKFDRVIMNLPESS------L-EFLDAALSLLKEGGII 198 (200)
T ss_dssp GG-------TT-EEEEEE--TSSG------G-GGHHHHHHHEEEEEEE
T ss_pred HHhcC----ccccCEEEECChHHH------H-HHHHHHHHHhcCCcEE
Confidence 88753 368999998765432 2 2333444577887765
No 109
>PHA03411 putative methyltransferase; Provisional
Probab=98.83 E-value=4.1e-08 Score=100.41 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=77.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.+.+|||+|||+|.+++.+++... ..+|+++|+|+.|++.|+++. . +++++++|+.++..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~----------~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~~~---- 123 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK----------PEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEFES---- 123 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhhcc----
Confidence 357999999999999998887642 258999999999999998752 2 68899999887642
Q ss_pred CCCccEEEEccccccccCCChHHHHHHH----------HHhccCCCCeEEcCceEEEEEEecchhhh
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHA----------HDRLLVENPLTVPCRVTTYGQLVESTFLW 202 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~----------~~~~L~p~G~iiP~~~~~~~~~ve~~~l~ 202 (694)
.++||+|++++....+-.+.....+... +.+++++.+.++-.++..+.+ +++..++
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~y 189 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPYY 189 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eeccccc
Confidence 3589999999866543222222211110 245666666655444433333 5665554
No 110
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.83 E-value=3.1e-08 Score=105.66 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++.+. +|+|+|.|+.|++.|+++++.|++ ++++++.+|..++.. ..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~------------~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~--~~ 237 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM------------QLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFAT--AQ 237 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC------------EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHH--hc
Confidence 468999999999999999999764 899999999999999999999999 489999999987642 12
Q ss_pred CCCccEEEEcccc
Q 044245 146 DSRADILVSEILD 158 (694)
Q Consensus 146 ~~~~DlIvse~~~ 158 (694)
.++||+|+.++.-
T Consensus 238 ~~~~D~Vv~dPPr 250 (315)
T PRK03522 238 GEVPDLVLVNPPR 250 (315)
T ss_pred CCCCeEEEECCCC
Confidence 3579999999774
No 111
>PRK08317 hypothetical protein; Provisional
Probab=98.83 E-value=5.8e-08 Score=98.83 Aligned_cols=106 Identities=25% Similarity=0.294 Sum_probs=79.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++..+ +..+|+++|.++.+++.|+++.. ....+++++.++..+++..
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~---------~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~- 84 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVG---------PEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFP- 84 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC---------CCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCC-
Confidence 45678999999999999999988763 13689999999999999988733 3345799999988776532
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-..+ .....+...+.++|+|||.++-
T Consensus 85 --~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 85 --DGSFDAVRSDRVLQHL---EDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred --CCCceEEEEechhhcc---CCHHHHHHHHHHHhcCCcEEEE
Confidence 3689999985322111 2245566677789999998863
No 112
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.81 E-value=4.5e-08 Score=101.73 Aligned_cols=110 Identities=19% Similarity=0.140 Sum_probs=83.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..++.+++... +.++|+|+|.++.+++.++++++.+|+. +|++++.|...+..
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~---------~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~-- 136 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMK---------NEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA-- 136 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcC---------CCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh--
Confidence 45789999999999999999888754 2368999999999999999999999986 79999999876542
Q ss_pred CCCCCccEEEEcccccc--ccC----------CC-------hHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSE--LLG----------EG-------LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~--l~~----------e~-------~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||.|+.++.-++ .+. +. ....++....++|+|||+++=
T Consensus 137 -~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY 197 (264)
T TIGR00446 137 -AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY 197 (264)
T ss_pred -hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1246999999874332 111 00 112355555579999999983
No 113
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.80 E-value=1.5e-08 Score=99.05 Aligned_cols=106 Identities=25% Similarity=0.288 Sum_probs=76.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc-cc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV-GV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~-~~ 143 (694)
-++.+|||+.||||.+++.|..+|+ .+|+.||.|+.++..+++|++..+..++++++.+|....-. ..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA-----------~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~ 109 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGA-----------KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA 109 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT------------SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCC-----------CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhc
Confidence 3689999999999999999999998 79999999999999999999999998889999999654321 00
Q ss_pred CCCCCccEEEEccccccccCCCh-HHHHHHHHH--hccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGL-IPTLQHAHD--RLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~--~~L~p~G~ii 185 (694)
...++||+|+.+|.+.. .. .+.++..+. .+|+++|.++
T Consensus 110 ~~~~~fDiIflDPPY~~----~~~~~~~l~~l~~~~~l~~~~~ii 150 (183)
T PF03602_consen 110 KKGEKFDIIFLDPPYAK----GLYYEELLELLAENNLLNEDGLII 150 (183)
T ss_dssp HCTS-EEEEEE--STTS----CHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred ccCCCceEEEECCCccc----chHHHHHHHHHHHCCCCCCCEEEE
Confidence 12478999999987742 32 354554443 6788888765
No 114
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.79 E-value=3.9e-08 Score=100.23 Aligned_cols=100 Identities=24% Similarity=0.258 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++.++ ..+++++|.++.+++.+++... +++.++.++..+...+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~----------~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~--- 95 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP----------QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLE--- 95 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC----------CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCC---
Confidence 457999999999999999999875 3579999999999998886543 3788999998877542
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...... ......++..+.++|+|||.++-
T Consensus 96 ~~~fD~vi~~~~l~~---~~~~~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 96 DSSFDLIVSNLALQW---CDDLSQALSELARVLKPGGLLAF 133 (240)
T ss_pred CCceeEEEEhhhhhh---ccCHHHHHHHHHHHcCCCcEEEE
Confidence 368999998633221 12355677777889999998873
No 115
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.79 E-value=4.9e-08 Score=97.85 Aligned_cols=103 Identities=17% Similarity=0.004 Sum_probs=76.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC--------------CCcEE
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM--------------GRNIK 130 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl--------------~~~I~ 130 (694)
.++.+|||+|||.|.-+.++|++|. +|+|+|+|+.+++.+.+ ++++ ..+|+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~------------~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH------------RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC------------eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceE
Confidence 4678999999999999999999985 89999999999997633 2222 23689
Q ss_pred EEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 131 VINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 131 vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++.+|..++.. ...++||.|+-..... .+.....+.+...+.++|+|||.++
T Consensus 98 ~~~~D~~~~~~--~~~~~fD~i~D~~~~~-~l~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 98 IFCGDFFALTA--ADLGPVDAVYDRAALI-ALPEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred EEEccCCCCCc--ccCCCcCEEEechhhc-cCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999988753 1225799887532222 2334445567778888999999754
No 116
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.79 E-value=4e-08 Score=104.47 Aligned_cols=107 Identities=12% Similarity=0.045 Sum_probs=81.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..++++.+ ..+++++|. +.+++.++++++..|+.++|+++.+|..+...
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p----------~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~--- 213 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFP----------ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY--- 213 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCC----------CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC---
Confidence 4568999999999999999999975 468999997 89999999999999999999999999876432
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..+|+|+..-+-+ ...+.....++..+.+.|+|||+++-..
T Consensus 214 --~~~D~v~~~~~lh-~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 214 --PEADAVLFCRILY-SANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred --CCCCEEEeEhhhh-cCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2479876521111 1122333456666677999999986443
No 117
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.79 E-value=4.7e-08 Score=94.12 Aligned_cols=111 Identities=20% Similarity=0.181 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.|.+|||+-+|||.+++.|+.+|+ .+++.||.|..++..+++|++..++..+.+++..|...... .+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-----------~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~--~~ 109 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-----------ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK--QL 109 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-----------ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHH--hc
Confidence 589999999999999999999998 79999999999999999999999988899999999874421 22
Q ss_pred CC--CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCce
Q 044245 146 DS--RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 146 ~~--~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
.. .||+|+.+|.+..-+.+.....+.-....+|+|+|.++-...
T Consensus 110 ~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 110 GTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 23 499999998775222211111122123478999998875443
No 118
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.79 E-value=2.1e-08 Score=97.37 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=71.4
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--CCCcEEEEeccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--MGRNIKVINKRSDELE 140 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l~~~I~vi~~~~~~l~ 140 (694)
...++.+|||||||+|+.|+.+++... ..+|++.|.++ .++.++.|++.|+ ...++.+..-++.+-.
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~----------~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~ 110 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG----------AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDEL 110 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-----------SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-H
T ss_pred hhcCCceEEEECCccchhHHHHHhccC----------CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcc
Confidence 355689999999999999999999932 26999999988 9999999999998 6678888888876521
Q ss_pred cccC-CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCe
Q 044245 141 VGVD-IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPL 183 (694)
Q Consensus 141 ~~~~-l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ 183 (694)
.... .+.+||+|++. ..++.+...+.+...++++|+++|.
T Consensus 111 ~~~~~~~~~~D~Ilas---Dv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 111 DSDLLEPHSFDVILAS---DVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp HHHHHS-SSBSEEEEE---S--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred cccccccccCCEEEEe---cccchHHHHHHHHHHHHHHhCCCCE
Confidence 0011 12589999872 3344567788899999999999887
No 119
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.78 E-value=7.7e-08 Score=100.60 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=79.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.+++.+++..+ ..+|+++|+|+.+++.|+++++ ++...++.++.+|..+..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~----------~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~---- 171 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP----------DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPL---- 171 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcC----
Confidence 3568999999999999999999874 3689999999999999999988 444568999999875421
Q ss_pred CCCCccEEEEccccccc-----c------CC---------C---hHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSEL-----L------GE---------G---LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l-----~------~e---------~---~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+++||+|++++..... + +| . ....+.....++|+|||.++-
T Consensus 172 ~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 172 PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 13689999998754211 0 11 1 123344555679999998864
No 120
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.78 E-value=5.7e-08 Score=97.94 Aligned_cols=102 Identities=25% Similarity=0.279 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++.++ ...+++++|.++.+++.++++.. ...+++++.++..++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~---------~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~--- 103 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAP---------DRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE--- 103 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcC---------CCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC---
Confidence 578999999999999999998875 12589999999999999988765 345799999998886532
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++.. .+-+......+++.+.++|+|||+++
T Consensus 104 ~~~~D~i~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 104 DNSFDAVTIAF---GLRNVTDIQKALREMYRVLKPGGRLV 140 (223)
T ss_pred CCcEEEEEEee---eeCCcccHHHHHHHHHHHcCCCcEEE
Confidence 35899998742 12222335567777778999999887
No 121
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.78 E-value=1.8e-08 Score=94.65 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=85.6
Q ss_pred cCCC-EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 65 TKSC-HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~-~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
.+.. +|||+|||.|.+...+++.|- ..+.+++|.|+.++++|+.+++++++++.|++.+.|+..-.
T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~egf----------~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~--- 131 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGHLLFQLAKEGF----------QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD--- 131 (227)
T ss_pred cccccceeeccCCchHHHHHHHHhcC----------CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc---
Confidence 3444 999999999999999999986 35699999999999999999999999988999999887643
Q ss_pred CCCCCccEEEEcc-cccc-ccCCC---hHHHHHHHHHhccCCCCeEEcCceE
Q 044245 144 DIDSRADILVSEI-LDSE-LLGEG---LIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 144 ~l~~~~DlIvse~-~~~~-l~~e~---~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
..+++||+|+--- ++.. |-++. -+.......+++|+|||+++-.++.
T Consensus 132 ~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 132 FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 3557899886421 1111 11122 2234556778899999999866554
No 122
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.78 E-value=3.3e-08 Score=105.32 Aligned_cols=101 Identities=18% Similarity=0.120 Sum_probs=76.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.+++.+++... ..+|+++|.|+.|++.|+++... .+++++.++..++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~----------~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~-- 175 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD----------AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFP-- 175 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCC--
Confidence 3568999999999999998887643 25899999999999999987542 3678899999887642
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+.||+|++...-. .-...+.++..+.++|+|||+++
T Consensus 176 -~~sFDvVIs~~~L~---~~~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 176 -TDYADRYVSAGSIE---YWPDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred -CCceeEEEEcChhh---hCCCHHHHHHHHHHhcCCCcEEE
Confidence 25899999842211 11123456667778999999975
No 123
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.6e-08 Score=104.52 Aligned_cols=109 Identities=14% Similarity=0.064 Sum_probs=76.7
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
-+++++... +++.|||+||| ||||+.|++.| |++|++++- .+.|.+.++++++.|+.+ ..+++-.....
T Consensus 153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~Di--Dp~AV~aa~eNa~~N~v~-~~~~~~~~~~~---- 222 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDI--DPQAVEAARENARLNGVE-LLVQAKGFLLL---- 222 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCChhHHHHHHHHcC-CceEEEecC--CHHHHHHHHHHHHHcCCc-hhhhcccccch----
Confidence 456666654 78899999999 99999999997 999999999 889999999999999997 43333322211
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
.....+++|+||+-. |. +.|.- .+-+ +.+.|+|||.++=+
T Consensus 223 ~~~~~~~~DvIVANI--------LA-~vl~~-La~~-~~~~lkpgg~lIlS 262 (300)
T COG2264 223 EVPENGPFDVIVANI--------LA-EVLVE-LAPD-IKRLLKPGGRLILS 262 (300)
T ss_pred hhcccCcccEEEehh--------hH-HHHHH-HHHH-HHHHcCCCceEEEE
Confidence 112236899999975 22 22210 2222 23469999877644
No 124
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.78 E-value=3.5e-08 Score=97.99 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=87.7
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
..+...+.+. .+.++||+||||+|.-++++|++.+ +.++|+++|.++..++.|+++++..|+.++|+++.
T Consensus 34 g~lL~~l~~~-~~~k~vLEIGt~~GySal~la~~l~---------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~ 103 (205)
T PF01596_consen 34 GQLLQMLVRL-TRPKRVLEIGTFTGYSALWLAEALP---------EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE 103 (205)
T ss_dssp HHHHHHHHHH-HT-SEEEEESTTTSHHHHHHHHTST---------TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred HHHHHHHHHh-cCCceEEEeccccccHHHHHHHhhc---------ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 3444444443 3568999999999999999998865 34799999999999999999999999999999999
Q ss_pred cccccccc--ccC-CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceE
Q 044245 134 KRSDELEV--GVD-IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 134 ~~~~~l~~--~~~-l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
++..+.-. ..+ ..++||+|+.+-- ............++|+|||.++-+..-
T Consensus 104 gda~~~l~~l~~~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 104 GDALEVLPELANDGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp S-HHHHHHHHHHTTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred eccHhhHHHHHhccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 99876421 011 1357999997521 222333344445699999998865443
No 125
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.78 E-value=6.5e-08 Score=96.11 Aligned_cols=124 Identities=18% Similarity=0.196 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
.-.|...+.+.. ..++||+||++.|.-++++|...+ .++++++||.++++++.|+++.++.|+.++|+++
T Consensus 47 ~g~~L~~L~~~~-~~k~iLEiGT~~GySal~mA~~l~---------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~ 116 (219)
T COG4122 47 TGALLRLLARLS-GPKRILEIGTAIGYSALWMALALP---------DDGRLTTIERDEERAEIARENLAEAGVDDRIELL 116 (219)
T ss_pred HHHHHHHHHHhc-CCceEEEeecccCHHHHHHHhhCC---------CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEE
Confidence 345555555533 578999999999999999998875 3579999999999999999999999999999999
Q ss_pred e-ccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEE
Q 044245 133 N-KRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYG 193 (694)
Q Consensus 133 ~-~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~ 193 (694)
. ++..+.-.. ...+.||+|+.+- .....+.+++..-++|+|||.++-+.+-..+
T Consensus 117 ~~gdal~~l~~-~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 117 LGGDALDVLSR-LLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred ecCcHHHHHHh-ccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 9 476554321 2457999999641 1223455566666689999999977765554
No 126
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.78 E-value=5.4e-08 Score=103.11 Aligned_cols=119 Identities=10% Similarity=0.019 Sum_probs=81.0
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
+.+...|.+.+.++.+|||+|||+|..+..++++..+ ..+|+++|+|+.|++.|++++....-..+|..++
T Consensus 51 ~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~---------~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~ 121 (301)
T TIGR03438 51 ERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQ---------PARYVPIDISADALKESAAALAADYPQLEVHGIC 121 (301)
T ss_pred HHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhcc---------CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEE
Confidence 4445556666777889999999999999999988631 2589999999999999998877643223688899
Q ss_pred cccccc-ccccCCCCCc---cEEEEcccccc--ccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 134 KRSDEL-EVGVDIDSRA---DILVSEILDSE--LLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 134 ~~~~~l-~~~~~l~~~~---DlIvse~~~~~--l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+|+.+. .. +.++ +.+++ .+++. .+.+.....++..+.+.|+|||.++-
T Consensus 122 gD~~~~~~~----~~~~~~~~~~~~-~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 122 ADFTQPLAL----PPEPAAGRRLGF-FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred Ecccchhhh----hcccccCCeEEE-EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 998763 22 1222 33222 12221 11222344566667779999999874
No 127
>PLN02672 methionine S-methyltransferase
Probab=98.77 E-value=2.8e-08 Score=118.97 Aligned_cols=79 Identities=19% Similarity=0.150 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC---------------CcEEE
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG---------------RNIKV 131 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~---------------~~I~v 131 (694)
+.+|||+|||+|.+++.+++.++ ..+|+|+|+|+.+++.|++|++.|+++ ++|++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~----------~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f 188 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL----------PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEF 188 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEE
Confidence 56899999999999999999874 368999999999999999999988653 57999
Q ss_pred EeccccccccccCCCCCccEEEEccc
Q 044245 132 INKRSDELEVGVDIDSRADILVSEIL 157 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~ 157 (694)
+++|+.+... ....+||+||||+.
T Consensus 189 ~~sDl~~~~~--~~~~~fDlIVSNPP 212 (1082)
T PLN02672 189 YESDLLGYCR--DNNIELDRIVGCIP 212 (1082)
T ss_pred EECchhhhcc--ccCCceEEEEECCC
Confidence 9999876431 11236999999985
No 128
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.76 E-value=5.3e-08 Score=97.49 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=70.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc--
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV-- 141 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~-- 141 (694)
+.++.+|||||||+|.++..+++..+ +.++|+|+|.++ | +++. +|+++++|+.+...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~---------~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIG---------DKGRVIACDILP-M----------DPIV-GVDFLQGDFRDELVLK 107 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC---------CCceEEEEeccc-c----------cCCC-CcEEEecCCCChHHHH
Confidence 56788999999999999999998864 236999999987 2 2333 58999999887531
Q ss_pred ---ccCCCCCccEEEEccccccccCCCh---------HHHHHHHHHhccCCCCeEEc
Q 044245 142 ---GVDIDSRADILVSEILDSELLGEGL---------IPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 142 ---~~~l~~~~DlIvse~~~~~l~~e~~---------l~~l~~~~~~~L~p~G~iiP 186 (694)
.....+++|+|+|++.-.. .+... ...++....++|+|||.++-
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~-~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNM-SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCcc-CCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 0011368999999753222 11111 13456667789999998864
No 129
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.76 E-value=6.4e-08 Score=105.56 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=86.2
Q ss_pred HhhCCHHHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 45 DMLNDSYRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 45 ~ml~D~~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
-..|+..+...|..+.... ..++.+|||+|||+|.+++.++..+. +|+|+|.|+.+++.|+++++.|
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~------------~v~~vE~~~~av~~a~~N~~~~ 278 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT------------QLTGIEIESEAIACAQQSAQML 278 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC------------eEEEEECCHHHHHHHHHHHHHc
Confidence 4456666555554444332 23568999999999999999997653 8999999999999999999999
Q ss_pred CCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 124 GMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 124 gl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
+++ +++++.+++.++.. ...++||+|+.+|... +..+.+.+.+. -++|++++
T Consensus 279 ~~~-~~~~~~~d~~~~~~--~~~~~~D~vi~DPPr~-----G~~~~~l~~l~-~~~p~~iv 330 (374)
T TIGR02085 279 GLD-NLSFAALDSAKFAT--AQMSAPELVLVNPPRR-----GIGKELCDYLS-QMAPKFIL 330 (374)
T ss_pred CCC-cEEEEECCHHHHHH--hcCCCCCEEEECCCCC-----CCcHHHHHHHH-hcCCCeEE
Confidence 986 89999999876532 1224699999998863 33444444444 25665544
No 130
>PTZ00146 fibrillarin; Provisional
Probab=98.76 E-value=7.2e-08 Score=99.72 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=74.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++... +.++|||||+++.|.+.+.+.++.. .+|..+.+|.+......
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG---------~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~ 197 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVG---------PEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYR 197 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhC---------CCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhh
Confidence 56789999999999999999999864 2468999999988765555444322 36888888876421001
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+.+.+|+|+++.. ..+....+....+++|+|||.++-
T Consensus 198 ~~~~~vDvV~~Dva-----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 198 MLVPMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred cccCCCCEEEEeCC-----CcchHHHHHHHHHHhccCCCEEEE
Confidence 12357999998752 122333455556779999999875
No 131
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.75 E-value=6.6e-08 Score=104.01 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.+..+||||||+|..++.+|+..+ ...++|+|+++.|++.|.+.+..+|+. +|.++++|+..+.. .-.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P----------~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~-~~~ 189 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP----------NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLE-LLP 189 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC----------CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhh-hCC
Confidence 357999999999999999999875 468999999999999999999999996 79999999876531 111
Q ss_pred CCCccEEEEccccccccCCC---hHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEG---LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~---~l~~l~~~~~~~L~p~G~iiP 186 (694)
++.+|.|+....+...-... ..+.++....++|+|||.+.-
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 36899998753221110010 235677788889999998753
No 132
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.74 E-value=1.1e-07 Score=96.14 Aligned_cols=120 Identities=21% Similarity=0.124 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC
Q 044245 49 DSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG 126 (694)
Q Consensus 49 D~~r~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~ 126 (694)
|..|.+...+.+... ...+.+|||+|||+|.++..+++.+. +++++|.++.+++.+++++..++..
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~------------~v~~iD~s~~~~~~a~~~~~~~~~~ 93 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA------------NVTGIDASEENIEVAKLHAKKDPLL 93 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC------------eEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 555555555555542 12478999999999999998888764 7999999999999999998887764
Q ss_pred CcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 127 RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++++...+..++... .+++||+|++.-. +-.......++..+.+.|+|||.++.
T Consensus 94 -~~~~~~~d~~~~~~~--~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 94 -KIEYRCTSVEDLAEK--GAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred -ceEEEeCCHHHhhcC--CCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 688888888776532 2368999988421 11222355677777789999998763
No 133
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=6.7e-08 Score=108.03 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=83.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..++.+++... +.++|+|+|+++.+++.++++++.+|+. +|+++++|..++..
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~---------~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~-- 315 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLK---------NTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHE-- 315 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccc--
Confidence 45678999999999999999998752 1369999999999999999999999996 59999999887531
Q ss_pred CCCCCccEEEEccccc--cccC--C--------Ch-------HHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDS--ELLG--E--------GL-------IPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~--e--------~~-------l~~l~~~~~~~L~p~G~ii 185 (694)
.++++||+|++++.-+ +.+. . .. ...++....++|+|||+++
T Consensus 316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 2336899999986422 1111 0 00 1234555667999999987
No 134
>PRK00811 spermidine synthase; Provisional
Probab=98.73 E-value=8.5e-08 Score=100.56 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--CC--CCcEEEEecccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--GM--GRNIKVINKRSDELEV 141 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--gl--~~~I~vi~~~~~~l~~ 141 (694)
..++||+||||+|.++..+++... ..+|++||+++.+++.|++..... +. ..+++++.+|......
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~----------~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~ 145 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPS----------VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA 145 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCC----------CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh
Confidence 468999999999999999887632 268999999999999999987642 22 4589999999877532
Q ss_pred ccCCCCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcCceE
Q 044245 142 GVDIDSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
...++||+|+++..+.....+. .-..+....++.|+|||+++-+...
T Consensus 146 --~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 146 --ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred --hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 1246899999986543321111 1245666677899999999855443
No 135
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.72 E-value=1.4e-07 Score=105.44 Aligned_cols=83 Identities=19% Similarity=0.150 Sum_probs=68.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.+++.+++.+. +|+|+|.|+.|++.|+++++.|++. +++++.+|+.+.....
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~~------------~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQAA------------EVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQ 361 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhCC------------EEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhh
Confidence 34678999999999999999998864 8999999999999999999999986 7999999987642100
Q ss_pred -CCCCCccEEEEccccc
Q 044245 144 -DIDSRADILVSEILDS 159 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~ 159 (694)
...++||+|++++...
T Consensus 362 ~~~~~~fD~Vi~dPPr~ 378 (443)
T PRK13168 362 PWALGGFDKVLLDPPRA 378 (443)
T ss_pred hhhcCCCCEEEECcCCc
Confidence 1125799999998764
No 136
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.70 E-value=3.3e-08 Score=94.12 Aligned_cols=102 Identities=24% Similarity=0.229 Sum_probs=69.8
Q ss_pred HHHHHHHhh---ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 55 AYRLAIDKM---VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 55 ~y~~ai~~~---~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
.+.+.+.+. ..++.+|||||||+|.++..+++.+. +|+++|+++.+++. .++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------~~~g~D~~~~~~~~-----------~~~~~ 64 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF------------EVTGVDISPQMIEK-----------RNVVF 64 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS------------EEEEEESSHHHHHH-----------TTSEE
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC------------EEEEEECCHHHHhh-----------hhhhh
Confidence 344445443 35689999999999999999988764 99999999999877 12222
Q ss_pred EeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 132 INKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..-+..... ..+++||+|++.-+-.++. -...++..+.++|+|||.++
T Consensus 65 ~~~~~~~~~---~~~~~fD~i~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~ 112 (161)
T PF13489_consen 65 DNFDAQDPP---FPDGSFDLIICNDVLEHLP---DPEEFLKELSRLLKPGGYLV 112 (161)
T ss_dssp EEEECHTHH---CHSSSEEEEEEESSGGGSS---HHHHHHHHHHHCEEEEEEEE
T ss_pred hhhhhhhhh---ccccchhhHhhHHHHhhcc---cHHHHHHHHHHhcCCCCEEE
Confidence 222222222 1236899999853332222 36677778888999999876
No 137
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=9.9e-08 Score=106.25 Aligned_cols=119 Identities=20% Similarity=0.126 Sum_probs=87.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||+|||+|..++.+++... +.++|+|+|.++.+++.++++++.+|+. +|+++++|..++....
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~---------~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMG---------DQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELK 319 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhC---------CCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccc
Confidence 45689999999999999999988753 2369999999999999999999999996 6999999988764100
Q ss_pred -CCCCCccEEEEcccccc--ccC--CC---------------hHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 -DIDSRADILVSEILDSE--LLG--EG---------------LIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~~--l~~--e~---------------~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
...++||.|+++..-++ .+. .. ....++....++|+|||+++=..++++
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 12358999998764322 221 11 023455555679999999975555544
No 138
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.70 E-value=1.3e-07 Score=91.56 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=64.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++++ .+|+++|.++.|++.++++... .++++++++|+.++..+.
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~------------~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERA------------ARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPK 75 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcC------------CeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccc
Confidence 3567899999999999999999885 4899999999999999988753 248999999998876422
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
.++|.|++++..
T Consensus 76 ---~~~d~vi~n~Py 87 (169)
T smart00650 76 ---LQPYKVVGNLPY 87 (169)
T ss_pred ---cCCCEEEECCCc
Confidence 369999998765
No 139
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.68 E-value=1.4e-07 Score=99.93 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC----CCcEEEEecccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM----GRNIKVINKRSDELEV 141 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl----~~~I~vi~~~~~~l~~ 141 (694)
++.+|||||||+|.+++.+++.|. +|+|+|+|+.|++.|+++.+..+. ..++++...|..++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~------------~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-- 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA------------IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-- 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC------------EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--
Confidence 468999999999999999999864 899999999999999999876522 23678888776553
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++.-.-.+ +.+.....+...+.+ +.+++.++
T Consensus 210 ----~~~fD~Vv~~~vL~H-~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 210 ----SGKYDTVTCLDVLIH-YPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred ----CCCcCEEEEcCEEEe-cCHHHHHHHHHHHHh-hcCCEEEE
Confidence 368999997422111 122222334444433 45666555
No 140
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.68 E-value=7.5e-08 Score=103.85 Aligned_cols=126 Identities=16% Similarity=0.081 Sum_probs=95.8
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKR 135 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~ 135 (694)
++.+.+.+. |++|||+-|=||.+|+.||+.|+ .+|+.||.|...++.|++|.+.||++ +++.++++|
T Consensus 209 R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA-----------~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~D 276 (393)
T COG1092 209 RRALGELAA-GKRVLNLFSYTGGFSVHAALGGA-----------SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGD 276 (393)
T ss_pred HHHHhhhcc-CCeEEEecccCcHHHHHHHhcCC-----------CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhh
Confidence 445666666 99999999999999999999997 79999999999999999999999985 579999999
Q ss_pred ccccccc-cCCCCCccEEEEccccccccCCC------hHHHHHHHHHhccCCCCeEEcCceEEEEE
Q 044245 136 SDELEVG-VDIDSRADILVSEILDSELLGEG------LIPTLQHAHDRLLVENPLTVPCRVTTYGQ 194 (694)
Q Consensus 136 ~~~l~~~-~~l~~~~DlIvse~~~~~l~~e~------~l~~l~~~~~~~L~p~G~iiP~~~~~~~~ 194 (694)
..++--. ....++||+||.+|....--... ....+.....++|+|||+++-..++-...
T Consensus 277 vf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 277 VFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred HHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 7665311 11224899999998654221111 12244555567999999999877765543
No 141
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.68 E-value=1.3e-07 Score=104.83 Aligned_cols=116 Identities=15% Similarity=0.136 Sum_probs=86.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||+|||+|..++.+++... +.++|+|+|.++.+++.+++++++.|+. +|+++.+|..++..
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~---------~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~-- 302 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMK---------DQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE-- 302 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh--
Confidence 45788999999999999999888753 2369999999999999999999999986 69999999887641
Q ss_pred CCCCCccEEEEcccccc--ccCC--C---------------hHHHHHHHHHhccCCCCeEEcCceEE
Q 044245 144 DIDSRADILVSEILDSE--LLGE--G---------------LIPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~--l~~e--~---------------~l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
...++||.|+++..-++ .+.. + ....++....++|+|||.++=..+++
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 22468999998764432 2110 0 01234445557999999987666553
No 142
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.67 E-value=7.4e-08 Score=94.17 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=73.6
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+++.|||+||| |.+++.+|+.+...+|+++|. ++.+.+++++.++.+|++ +|+++++..+++.. .+++|+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~--s~~~~~~a~~~~~~~~~~--~i~~i~~d~~~~~~----~~~fD~ 112 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLES--NHKKVAFLREVKAELGLN--NVEIVNGRAEDFQH----EEQFDV 112 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeC--cHHHHHHHHHHHHHhCCC--CeEEEecchhhccc----cCCccE
Confidence 357899999999 999999888765678999999 666666788888889985 59999998877632 468999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
|++..+ . -++ . + + ....++|+|||.++-
T Consensus 113 I~s~~~-~----~~~-~-~---~--~~~~~~LkpgG~lvi 140 (181)
T TIGR00138 113 ITSRAL-A----SLN-V-L---L--ELTLNLLKVGGYFLA 140 (181)
T ss_pred EEehhh-h----CHH-H-H---H--HHHHHhcCCCCEEEE
Confidence 999751 1 111 1 1 1 122346999998883
No 143
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.67 E-value=1.4e-07 Score=95.92 Aligned_cols=73 Identities=26% Similarity=0.273 Sum_probs=62.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++.+. +|+++|.|+.|++.|+++....+..+++.++.++...
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~------------~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~------ 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA------------KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES------ 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC------------EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh------
Confidence 4578999999999999999998864 7999999999999999999888886789999888432
Q ss_pred CCCCccEEEEc
Q 044245 145 IDSRADILVSE 155 (694)
Q Consensus 145 l~~~~DlIvse 155 (694)
..+.||+|++.
T Consensus 124 ~~~~fD~v~~~ 134 (230)
T PRK07580 124 LLGRFDTVVCL 134 (230)
T ss_pred ccCCcCEEEEc
Confidence 13679999873
No 144
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.67 E-value=1.6e-07 Score=104.80 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=75.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc-
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV- 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~- 143 (694)
.++.+|||+|||+|.+++.+++.+ .+|+|+|.|+.|++.|+++++.|++. +++++.+|..+.....
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~------------~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~ 357 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA------------KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQP 357 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC------------CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHH
Confidence 456899999999999999999875 38999999999999999999999985 8999999987642100
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
....+||+|+.++...+ ..+.++..+.+ ++|++++
T Consensus 358 ~~~~~~D~vi~dPPr~G-----~~~~~l~~l~~-l~~~~iv 392 (431)
T TIGR00479 358 WAGQIPDVLLLDPPRKG-----CAAEVLRTIIE-LKPERIV 392 (431)
T ss_pred hcCCCCCEEEECcCCCC-----CCHHHHHHHHh-cCCCEEE
Confidence 11246999999876532 23444444442 5666544
No 145
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.67 E-value=1.6e-07 Score=104.93 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=86.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||+|||+|..++.+++... +.++|+|+|.|+.+++.++++++.+|+. +|+++.+|..++..
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~---------~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~-- 315 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQ---------NRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP-- 315 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhC---------CCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc--
Confidence 35688999999999999998887643 1368999999999999999999999986 79999999887641
Q ss_pred CCCCCccEEEEccccc--cccC----------CCh-------HHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDS--ELLG----------EGL-------IPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~----------e~~-------l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
+++||.|+.++.-+ +.+. +.. ...++....++|+|||+++=..+++.
T Consensus 316 --~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 316 --EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred --CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 25799999875422 2211 001 12355566679999999987655554
No 146
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.66 E-value=2.3e-07 Score=94.54 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=78.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++.+. +|+++|.++.+++.|++++..++. ++.++..+..++.. .
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~------------~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~--~ 110 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA------------DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA--E 110 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC------------eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh--h
Confidence 3578999999999999999888764 899999999999999998887766 57788777776531 1
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||+|++..+ +.+-.-...++..+.++|+|||.++.
T Consensus 111 ~~~~fD~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 111 HPGQFDVVTCMEM---LEHVPDPASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred cCCCccEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEEEE
Confidence 2368999987421 11222355667777889999998873
No 147
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.66 E-value=1.4e-07 Score=98.67 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++..+.. ....|+|+|+|+.|++.|+++. .++.++.++..+++++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~-------~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~--- 148 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEI-------TTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFA--- 148 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccc-------cCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCc---
Confidence 35789999999999999888775310 0137999999999999987642 2578888998887653
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++.||+|++.. ... ....+.+.|+|||+++
T Consensus 149 ~~sfD~I~~~~------~~~----~~~e~~rvLkpgG~li 178 (272)
T PRK11088 149 DQSLDAIIRIY------APC----KAEELARVVKPGGIVI 178 (272)
T ss_pred CCceeEEEEec------CCC----CHHHHHhhccCCCEEE
Confidence 26899999731 111 2345567999999987
No 148
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.66 E-value=1.8e-07 Score=94.07 Aligned_cols=102 Identities=17% Similarity=0.008 Sum_probs=75.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC--------------CCcEE
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM--------------GRNIK 130 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl--------------~~~I~ 130 (694)
.++.+|||+|||.|.-++++|+.|. +|+|+|+|+.+++.+.+ ++++ ..+|+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~------------~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH------------EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC------------eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceE
Confidence 4578999999999999999999885 89999999999987642 3333 25799
Q ss_pred EEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 131 VINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 131 vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
++.+|+.++... ...+||.|+-..+-. .+.....+.+...+.++|+|||+.
T Consensus 101 ~~~~D~~~l~~~--~~~~fd~v~D~~~~~-~l~~~~R~~~~~~l~~lL~pgG~~ 151 (218)
T PRK13255 101 IYCGDFFALTAA--DLADVDAVYDRAALI-ALPEEMRERYVQQLAALLPAGCRG 151 (218)
T ss_pred EEECcccCCCcc--cCCCeeEEEehHhHh-hCCHHHHHHHHHHHHHHcCCCCeE
Confidence 999999887531 124789988543222 223444566777888899999863
No 149
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=1.5e-07 Score=104.55 Aligned_cols=116 Identities=15% Similarity=0.030 Sum_probs=85.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..++.+++.+. ..+|+|+|.++.+++.++++++.+|+. ++++.+|..++...
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~----------~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~- 308 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAP----------QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQW- 308 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcC----------CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhh-
Confidence 45789999999999999999998864 259999999999999999999999984 78999998765310
Q ss_pred CCCCCccEEEEcccccc--ccC----------CC-------hHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDSE--LLG----------EG-------LIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~--l~~----------e~-------~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
..+++||.|++++.-+. .+. +. ....++....++|+|||+++=..++++
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 01357999998874331 111 00 112455555679999999984444333
No 150
>PRK01581 speE spermidine synthase; Validated
Probab=98.64 E-value=2.1e-07 Score=98.74 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=84.2
Q ss_pred HHHHHHh----hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH-----HHcCC-
Q 044245 56 YRLAIDK----MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL-----HVNGM- 125 (694)
Q Consensus 56 y~~ai~~----~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~-----~~ngl- 125 (694)
|.+.+.. ......+||+||||+|.....+.+... ..+|++||+++.|++.|++.- ....+
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~----------v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~ 205 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYET----------VLHVDLVDLDGSMINMARNVPELVSLNKSAFF 205 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCC----------CCeEEEEeCCHHHHHHHHhccccchhccccCC
Confidence 5555543 234468999999999998888887643 369999999999999999621 11222
Q ss_pred CCcEEEEeccccccccccCCCCCccEEEEccccccc--cCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 126 GRNIKVINKRSDELEVGVDIDSRADILVSEILDSEL--LGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 126 ~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l--~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..+++++.+|..++.. ...++||+|++++.+... ...-.-..+...+++.|+|||+++-+.
T Consensus 206 DpRV~vvi~Da~~fL~--~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 206 DNRVNVHVCDAKEFLS--SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCceEEEECcHHHHHH--hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 3599999999887532 234689999998654321 111122456677788999999986553
No 151
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.64 E-value=1.6e-07 Score=99.25 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEe-cccccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-GMGRNIKVIN-KRSDELEVGV 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-gl~~~I~vi~-~~~~~l~~~~ 143 (694)
++.+|||||||+|.+..+++.+.. ..+++|+|+++.+++.|+++++.| ++.++|+++. .+..++..+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~----------~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i 183 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY----------GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGI 183 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC----------CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcc
Confidence 357899999999977666665432 368999999999999999999999 8999999864 3333322111
Q ss_pred -CCCCCccEEEEccccc
Q 044245 144 -DIDSRADILVSEILDS 159 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~ 159 (694)
...++||+|+|||..+
T Consensus 184 ~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 184 IHKNERFDATLCNPPFH 200 (321)
T ss_pred cccCCceEEEEeCCCCc
Confidence 1136899999999764
No 152
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.63 E-value=8.9e-08 Score=85.53 Aligned_cols=107 Identities=20% Similarity=0.161 Sum_probs=73.0
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
|++.||||||| |.+++.+|+.....+|+++|. ++.+.+++++.+..++.. ++|+++++.. ..... . .+++|+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~i~~~~~d~-~~~~~-~-~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDI--SPEMLEIARERAAEEGLS-DRITFVQGDA-EFDPD-F-LEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEES--SHHHHHHHHHHHHHTTTT-TTEEEEESCC-HGGTT-T-SSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeC--CHHHHHHHHHHHHhcCCC-CCeEEEECcc-ccCcc-c-CCCCCEE
Confidence 46789999999 999999998212467999999 777778888888778887 8999999976 22222 2 4679999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-. +.+ ..+++.+... -.-+++.++|+|||+++
T Consensus 75 ~~~~-~~~-~~~~~~~~~~--~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 75 ICSG-FTL-HFLLPLDERR--RVLERIRRLLKPGGRLV 108 (112)
T ss_dssp EECS-GSG-GGCCHHHHHH--HHHHHHHHHEEEEEEEE
T ss_pred EECC-Ccc-ccccchhHHH--HHHHHHHHhcCCCcEEE
Confidence 9987 321 1233311110 11122345799999875
No 153
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.63 E-value=1.1e-07 Score=98.86 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=80.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~~~~l~~~~ 143 (694)
.++++|||+-|=||.+|+.|++.|+ .+|+.||.|..+++.|++|++.||++ ++++++..|..+.-...
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA-----------~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~ 190 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGA-----------KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRL 190 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTE-----------SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHCCC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHH
Confidence 4589999999999999999998886 78999999999999999999999986 68999999976632111
Q ss_pred CCCCCccEEEEccccccccCCC----hHHHHHHHHHhccCCCCeEEcCce
Q 044245 144 DIDSRADILVSEILDSELLGEG----LIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~----~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
...++||+||.+|.... -+.- ....+.....++|+|||.++-+.+
T Consensus 191 ~~~~~fD~IIlDPPsF~-k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 191 KKGGRFDLIILDPPSFA-KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHTT-EEEEEE--SSEE-SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred hcCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 12368999999987542 2211 233455555579999999875544
No 154
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.63 E-value=3.2e-07 Score=91.42 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=57.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ ..+++|+|+|+.|++.|+++. + +++++.++..+ +.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~----------~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~-~~-- 101 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP----------FKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFD-PF-- 101 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC----------CCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccC-CC--
Confidence 45678999999999999999888732 258999999999999998753 2 46777888766 32
Q ss_pred CCCCCccEEEEccc
Q 044245 144 DIDSRADILVSEIL 157 (694)
Q Consensus 144 ~l~~~~DlIvse~~ 157 (694)
.+++||+|++..+
T Consensus 102 -~~~sfD~V~~~~v 114 (204)
T TIGR03587 102 -KDNFFDLVLTKGV 114 (204)
T ss_pred -CCCCEEEEEECCh
Confidence 2368999998543
No 155
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.62 E-value=2.4e-07 Score=80.00 Aligned_cols=103 Identities=24% Similarity=0.300 Sum_probs=76.5
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSR 148 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~ 148 (694)
+++|+|||+|.++..+++.. ..+++++|.++.+.+.+++....++ ..+++++.++..+... ...++
T Consensus 1 ~ildig~G~G~~~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALASGP-----------GARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPP--EADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC-----------CCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhcc--ccCCc
Confidence 48999999999998888732 3699999999999999986544443 3589999999887642 12368
Q ss_pred ccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 149 ADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 149 ~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+|+|+++...... ......+.....+.|+++|.++..
T Consensus 67 ~d~i~~~~~~~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999986543321 334556666667789999998754
No 156
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.62 E-value=2.1e-07 Score=89.37 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=72.2
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEE-EEeccccccccccCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIK-VINKRSDELEVGVDID 146 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~-vi~~~~~~l~~~~~l~ 146 (694)
.-||+||||||.-=- |.-+-+..+|+++|.|++|-+.|.+.++.+.-. ++. ++.++.+++.- --+
T Consensus 78 ~~vLEvgcGtG~Nfk-----------fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~--l~d 143 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFK-----------FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQ--LAD 143 (252)
T ss_pred cceEEecccCCCCcc-----------cccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcc--ccc
Confidence 457999999995421 222224579999999999999999999988554 676 89999998861 123
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++|.||+-+.-+. .++... .+...+++|+|||+++
T Consensus 144 ~s~DtVV~TlvLCS--ve~~~k-~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCS--VEDPVK-QLNEVRRLLRPGGRII 179 (252)
T ss_pred CCeeeEEEEEEEec--cCCHHH-HHHHHHHhcCCCcEEE
Confidence 78999998432221 244444 4555677999999876
No 157
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.61 E-value=2.4e-07 Score=102.94 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=85.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..++.+++... .++|+|+|.++.+++.++++++.+|+..+++++.++.......
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~----------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~- 304 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP----------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW- 304 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC----------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-
Confidence 45689999999999999999998753 3699999999999999999999999874455577776543210
Q ss_pred CCCCCccEEEEccccc--cccCC--C---------------hHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDS--ELLGE--G---------------LIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~e--~---------------~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
...++||.|+++..-+ +.+.. . ....++....++|+|||+++=..+++.
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 0135799999875422 23221 1 012455555679999999986666555
No 158
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.61 E-value=2.1e-07 Score=96.52 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCCH----HHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH----HcC-------------
Q 044245 66 KSCHVLDIGAGTGL----LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH----VNG------------- 124 (694)
Q Consensus 66 ~~~~VLDiG~GtG~----lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~----~ng------------- 124 (694)
++.+|||+|||||- +++.+++.++.. .....+|+|+|+|+.|++.|++.+- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~-----~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~ 173 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKA-----REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRV 173 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhc-----CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeC
Confidence 34699999999995 677777765410 0013589999999999999997531 011
Q ss_pred ---------CCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 125 ---------MGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 125 ---------l~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+.++|++...|..+...+ .++||+|+|..+-.++ .......++..+.+.|+|||.++-.
T Consensus 174 ~~~~~v~~~ir~~V~F~~~dl~~~~~~---~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 174 EDKYRVKPELKERVRFAKHNLLAESPP---LGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CCeEEEChHHhCcCEEeeccCCCCCCc---cCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 224788888888775431 3689999984222111 1223445777777899999998754
No 159
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=1.8e-07 Score=98.87 Aligned_cols=107 Identities=20% Similarity=0.176 Sum_probs=84.7
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
.-+.+.+.+|.+|+|+-||-|.+++.+|++|+ .+|+|+|+||.+++++++|++.|++.++|..+++|..
T Consensus 180 ~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~-----------~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~r 248 (341)
T COG2520 180 ARVAELVKEGETVLDMFAGVGPFSIPIAKKGR-----------PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAR 248 (341)
T ss_pred HHHHhhhcCCCEEEEccCCcccchhhhhhcCC-----------ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHH
Confidence 33555677799999999999999999999987 4599999999999999999999999988999999999
Q ss_pred ccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 138 ELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++... .+.+|-|+.+.+.+ ..+ +....-..+++||++.
T Consensus 249 ev~~~---~~~aDrIim~~p~~------a~~-fl~~A~~~~k~~g~iH 286 (341)
T COG2520 249 EVAPE---LGVADRIIMGLPKS------AHE-FLPLALELLKDGGIIH 286 (341)
T ss_pred Hhhhc---cccCCEEEeCCCCc------chh-hHHHHHHHhhcCcEEE
Confidence 98642 16799999765442 122 2233334677787763
No 160
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.59 E-value=2.9e-07 Score=93.92 Aligned_cols=114 Identities=14% Similarity=0.073 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc--c
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG--V 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~--~ 143 (694)
+.++||+||+++|.-++++|++.+ +.++|+++|.+++.++.|+++++..|+.++|+++.++..+.... .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~---------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~ 149 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP---------EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIE 149 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC---------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHh
Confidence 357999999999999999998754 34799999999999999999999999999999999998764211 0
Q ss_pred --CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEE
Q 044245 144 --DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQ 194 (694)
Q Consensus 144 --~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~ 194 (694)
...++||+|+.+-- .+.....+ +...++|+|||.++-+..-..+.
T Consensus 150 ~~~~~~~fD~iFiDad-----K~~Y~~y~-~~~l~ll~~GGviv~DNvl~~G~ 196 (247)
T PLN02589 150 DGKYHGTFDFIFVDAD-----KDNYINYH-KRLIDLVKVGGVIGYDNTLWNGS 196 (247)
T ss_pred ccccCCcccEEEecCC-----HHHhHHHH-HHHHHhcCCCeEEEEcCCCCCCc
Confidence 01358999997521 12234444 44446999999998776655544
No 161
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.59 E-value=2.4e-07 Score=97.24 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=68.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++..++..++++++++|+.+...
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~------------~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAK------------KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-- 99 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCC------------cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--
Confidence 55788999999999999999998764 8999999999999999999887766799999999987543
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
.++|.|++++.++
T Consensus 100 ---~~~d~VvaNlPY~ 112 (294)
T PTZ00338 100 ---PYFDVCVANVPYQ 112 (294)
T ss_pred ---cccCEEEecCCcc
Confidence 3689999987664
No 162
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.58 E-value=1.9e-07 Score=94.13 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=68.8
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+.+.|||+|+| |+++||+|+--...+|.+||- .+.+.+.|++.++.|+++ ++|+|+++++.++.... ...++|+|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEi--q~~~a~~A~~nv~ln~l~-~ri~v~~~Di~~~~~~~-~~~~fD~I 119 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEI--QEEAAEMAQRNVALNPLE-ERIQVIEADIKEFLKAL-VFASFDLI 119 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEe--CHHHHHHHHHHHHhCcch-hceeEehhhHHHhhhcc-cccccCEE
Confidence 35689999999 999999998622589999999 788888999999999998 99999999888776532 23468999
Q ss_pred Ecc-ccccC
Q 044245 484 IGE-PYYFG 491 (694)
Q Consensus 484 vsE-~~~~~ 491 (694)
||- |||.-
T Consensus 120 i~NPPyf~~ 128 (248)
T COG4123 120 ICNPPYFKQ 128 (248)
T ss_pred EeCCCCCCC
Confidence 999 57764
No 163
>PLN02366 spermidine synthase
Probab=98.57 E-value=6.3e-07 Score=94.63 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=90.8
Q ss_pred HHHHHHHhh----ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--CCC-C
Q 044245 55 AYRLAIDKM----VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--GMG-R 127 (694)
Q Consensus 55 ~y~~ai~~~----~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--gl~-~ 127 (694)
.|.+.+... ....++||+||||.|.++..+++... ..+|+.||+++.+++.|++..... ++. .
T Consensus 76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~----------v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dp 145 (308)
T PLN02366 76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSS----------VEQIDICEIDKMVIDVSKKFFPDLAVGFDDP 145 (308)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCC----------CCeEEEEECCHHHHHHHHHhhhhhccccCCC
Confidence 455655542 24568999999999999999988732 358999999999999999987542 333 4
Q ss_pred cEEEEeccccccccccCC-CCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcCceEEEEE
Q 044245 128 NIKVINKRSDELEVGVDI-DSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPCRVTTYGQ 194 (694)
Q Consensus 128 ~I~vi~~~~~~l~~~~~l-~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~~~~~~~ 194 (694)
|++++.+|..+.-. .. .++||+|+++..+....... .-+.+.+..++.|+|||+++-+....+..
T Consensus 146 Rv~vi~~Da~~~l~--~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~ 212 (308)
T PLN02366 146 RVNLHIGDGVEFLK--NAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLH 212 (308)
T ss_pred ceEEEEChHHHHHh--hccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccc
Confidence 89999999766431 12 35899999976543221111 13356667778999999998777665543
No 164
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.56 E-value=1.7e-07 Score=90.69 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 044245 51 YRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNI 129 (694)
Q Consensus 51 ~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I 129 (694)
.|++..++.+.+. +.....|.|+|||+|..+-.++++.+ ...|+|+|.|++|++.|++. +. ++
T Consensus 14 eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP----------~A~i~GiDsS~~Mla~Aa~r-----lp-~~ 77 (257)
T COG4106 14 ERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWP----------DAVITGIDSSPAMLAKAAQR-----LP-DA 77 (257)
T ss_pred hccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCC----------CCeEeeccCCHHHHHHHHHh-----CC-CC
Confidence 3455556666664 34468999999999999999999986 57999999999999998653 33 68
Q ss_pred EEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 130 KVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 130 ~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
++..+|..++.. ....|++++|-.-..+- +.. .++..+-..|.|||.+
T Consensus 78 ~f~~aDl~~w~p----~~~~dllfaNAvlqWlp--dH~-~ll~rL~~~L~Pgg~L 125 (257)
T COG4106 78 TFEEADLRTWKP----EQPTDLLFANAVLQWLP--DHP-ELLPRLVSQLAPGGVL 125 (257)
T ss_pred ceecccHhhcCC----CCccchhhhhhhhhhcc--ccH-HHHHHHHHhhCCCceE
Confidence 899999998863 25799999975443331 122 2333333478999976
No 165
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.56 E-value=8.1e-07 Score=91.38 Aligned_cols=103 Identities=17% Similarity=0.048 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
+|++|||||||.|..+..++++|+ ..|+|+|.+.......+...+..|...++..+.-.+++++.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-----------~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~---- 179 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-----------KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN---- 179 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-----------CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----
Confidence 489999999999999999999998 78999999887765555444444544455555555666652
Q ss_pred CCCccEEEEccccccccC-CChHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSELLG-EGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~-e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+.||+|+|- ++++ ....-..+..++..|++||.+|-.
T Consensus 180 ~~~FDtVF~M----GVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 180 LGAFDTVFSM----GVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred cCCcCEEEEe----eehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 3689999983 2333 222334455566789999988744
No 166
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.55 E-value=1.4e-07 Score=91.39 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=60.8
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |++++.+|+.+...+|+++|- ++.|.+.+++.++.|+++ + ++++.++.-+ .++.++.|+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi--~~~a~~~a~~n~~~n~~~-~-v~~~~~d~~~----~~~~~~fD~I 102 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDI--NPDALELAKRNAERNGLE-N-VEVVQSDLFE----ALPDGKFDLI 102 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEES--BHHHHHHHHHHHHHTTCT-T-EEEEESSTTT----TCCTTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHHHHhcCcc-c-cccccccccc----cccccceeEE
Confidence 45689999999 999999999863448999999 888889999999999997 5 9999875321 2335899999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
||-|
T Consensus 103 v~NP 106 (170)
T PF05175_consen 103 VSNP 106 (170)
T ss_dssp EE--
T ss_pred EEcc
Confidence 9996
No 167
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.54 E-value=6.5e-07 Score=97.21 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHhhcc-CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC
Q 044245 48 NDSYRNRAYRLAIDKMVT-KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG 126 (694)
Q Consensus 48 ~D~~r~~~y~~ai~~~~~-~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~ 126 (694)
|-......|..+.. .+. .+.+|||++||+|.+++.+++.. .+|+++|.++.|++.|++|++.|++.
T Consensus 188 N~~~~e~l~~~v~~-~~~~~~~~vLDl~~G~G~~sl~la~~~------------~~v~~vE~~~~ai~~a~~N~~~~~~~ 254 (362)
T PRK05031 188 NAAVNEKMLEWALD-ATKGSKGDLLELYCGNGNFTLALARNF------------RRVLATEISKPSVAAAQYNIAANGID 254 (362)
T ss_pred CHHHHHHHHHHHHH-HhhcCCCeEEEEeccccHHHHHHHhhC------------CEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 44443334433333 332 23579999999999999888864 48999999999999999999999996
Q ss_pred CcEEEEeccccccccc-cC-----------C-CCCccEEEEccccc
Q 044245 127 RNIKVINKRSDELEVG-VD-----------I-DSRADILVSEILDS 159 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~-~~-----------l-~~~~DlIvse~~~~ 159 (694)
+++++.+|..+.... .. . ..+||+|+.+|...
T Consensus 255 -~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~ 299 (362)
T PRK05031 255 -NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA 299 (362)
T ss_pred -cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCC
Confidence 899999998764210 00 0 12589999998863
No 168
>PRK03612 spermidine synthase; Provisional
Probab=98.53 E-value=3.8e-07 Score=103.66 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=81.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH-----HcCCC-CcEEEEeccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH-----VNGMG-RNIKVINKRSDE 138 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~-----~ngl~-~~I~vi~~~~~~ 138 (694)
.+.++|||||||+|.++..+++... ..+|+++|+|+++++.|+++.. .+.++ ++++++.+|..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~----------v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~ 365 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD----------VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN 365 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC----------cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH
Confidence 4568999999999999999887642 2599999999999999998421 11233 489999999887
Q ss_pred cccccCCCCCccEEEEccccccccC--CChHHHHHHHHHhccCCCCeEEcCceE
Q 044245 139 LEVGVDIDSRADILVSEILDSELLG--EGLIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 139 l~~~~~l~~~~DlIvse~~~~~l~~--e~~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
... ..+++||+|++++.+..... ...-..+.+..++.|+|||+++-+...
T Consensus 366 ~l~--~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 366 WLR--KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred HHH--hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 532 23468999999865432111 112234666677899999999876543
No 169
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.53 E-value=4.9e-07 Score=98.36 Aligned_cols=100 Identities=27% Similarity=0.287 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||++||+|.+++.+++..+ ..+|+++|.|+.+++.+++|++.|++. +++++++|...+.. . .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~----------~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~--~-~ 123 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG----------VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLH--E-E 123 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC----------CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHh--h-c
Confidence 46899999999999999988653 258999999999999999999999996 67899999876532 1 3
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++||+|+.+++|. . .+.+..++. .++++|++.-.
T Consensus 124 ~~fD~V~lDP~Gs---~---~~~l~~al~-~~~~~gilyvS 157 (382)
T PRK04338 124 RKFDVVDIDPFGS---P---APFLDSAIR-SVKRGGLLCVT 157 (382)
T ss_pred CCCCEEEECCCCC---c---HHHHHHHHH-HhcCCCEEEEE
Confidence 5799999998642 1 233333344 57888887654
No 170
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.53 E-value=4.6e-07 Score=88.89 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=72.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.+++..|+.....+|+++|. ++.+.+.+++.++.|+++ + |++++++.+++.. .++.|+|
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~--s~~~l~~A~~~~~~~~l~-~-i~~~~~d~~~~~~----~~~fDlV 116 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDS--LGKKIAFLREVAAELGLK-N-VTVVHGRAEEFGQ----EEKFDVV 116 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeC--cHHHHHHHHHHHHHcCCC-C-EEEEeccHhhCCC----CCCccEE
Confidence 36789999999 999998877533679999999 776677889999999996 5 9999998876543 3689999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
++..+ .++.. |+.. ..++|+|||.++.
T Consensus 117 ~~~~~-------~~~~~--~l~~---~~~~LkpGG~lv~ 143 (187)
T PRK00107 117 TSRAV-------ASLSD--LVEL---CLPLLKPGGRFLA 143 (187)
T ss_pred EEccc-------cCHHH--HHHH---HHHhcCCCeEEEE
Confidence 98642 11111 1122 2236999998773
No 171
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=9.4e-07 Score=83.33 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
...|||||||||..+-++++... +.....+.|+||.+++..++.++.|+. ++.++..|...-- .+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~---------~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l----~~ 108 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG---------PQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGL----RN 108 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC---------CCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhh----cc
Confidence 57899999999999999988765 356789999999999999999999987 5888888865422 23
Q ss_pred CCccEEEEccc
Q 044245 147 SRADILVSEIL 157 (694)
Q Consensus 147 ~~~DlIvse~~ 157 (694)
+++|+++.++.
T Consensus 109 ~~VDvLvfNPP 119 (209)
T KOG3191|consen 109 ESVDVLVFNPP 119 (209)
T ss_pred CCccEEEECCC
Confidence 79999998874
No 172
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.52 E-value=6.9e-07 Score=88.00 Aligned_cols=102 Identities=23% Similarity=0.199 Sum_probs=68.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
+.++.+|||+|||+|.++..+++... +..+|+++|.|+.+ +. .++++++++..+....
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~---------~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVG---------GKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLN 88 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhC---------CCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHH
Confidence 56789999999999999999888764 23589999999854 12 3578888887653210
Q ss_pred ----cCCCCCccEEEEcccccc-cc-CCC------hHHHHHHHHHhccCCCCeEEc
Q 044245 143 ----VDIDSRADILVSEILDSE-LL-GEG------LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ----~~l~~~~DlIvse~~~~~-l~-~e~------~l~~l~~~~~~~L~p~G~iiP 186 (694)
....+++|+|+++....+ .. ... ..+.++....++|+|||+++-
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 001257999998642110 00 001 124555666779999998774
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.52 E-value=4.6e-07 Score=93.83 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=64.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+++|.++.|++.++++++. . ++++++++|..++..
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~------------~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~-- 89 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAK------------KVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDL-- 89 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCC------------EEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCc--
Confidence 45688999999999999999999853 899999999999999987754 2 489999999987653
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
.++|.|++++.++
T Consensus 90 ---~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 ---PEFNKVVSNLPYQ 102 (258)
T ss_pred ---hhceEEEEcCCcc
Confidence 3589999997653
No 174
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.51 E-value=2.1e-07 Score=83.91 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=76.4
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
|.+|||+|+| |.+++.+++.| +.+|+++|- ++.+.+++++.+..+++. ++++++.++..++. ..+..+++|+||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi--~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~-~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDI--DPEAVELARRNLPRNGLD-DRVEVIVGDARDLP-EPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEES--SHHHHHHHHHHCHHCTTT-TTEEEEESHHHHHH-HTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEE--CHHHHHHHHHHHHHccCC-ceEEEEECchhhch-hhccCceeEEEE
Confidence 3479999999 99999999997 899999999 888888999999999998 89999999877665 124468999999
Q ss_pred ccccccCCcc---ccCcchhhHHHHHhhcccccCCCceE
Q 044245 485 GEPYYFGNDG---MLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 485 sE~~~~~~e~---~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
+-|-|..... ... . +. ...-.+..++|+|||.+
T Consensus 76 ~npP~~~~~~~~~~~~-~-~~-~~~~~~~~~~L~~gG~~ 111 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALR-R-LY-SRFLEAAARLLKPGGVL 111 (117)
T ss_dssp E--STTSBTT----GG-C-HH-HHHHHHHHHHEEEEEEE
T ss_pred ECCCCccccccchhhH-H-HH-HHHHHHHHHHcCCCeEE
Confidence 9965442111 111 1 11 01112224579999965
No 175
>PRK06202 hypothetical protein; Provisional
Probab=98.51 E-value=7.9e-07 Score=90.63 Aligned_cols=100 Identities=24% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++...... +..+|+|+|.|+.|++.|++....++ +++...+...+.. .
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g------~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~---~ 126 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDG------LRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVA---E 126 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCC------CCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccc---c
Confidence 467999999999999988886532000 12589999999999999988765443 4455555555442 2
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccC
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLV 179 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~ 179 (694)
+++||+|++...-.++ .+..+..++....++++
T Consensus 127 ~~~fD~V~~~~~lhh~-~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 127 GERFDVVTSNHFLHHL-DDAEVVRLLADSAALAR 159 (232)
T ss_pred CCCccEEEECCeeecC-ChHHHHHHHHHHHHhcC
Confidence 3689999996433222 22224455566666776
No 176
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.51 E-value=3.7e-07 Score=96.06 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+++.+.. .+++.|||+||| |+|++.+++.| +++|++++. ++.+.+.+++.++.|+++ ++++++.+....
T Consensus 150 l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDi--d~~al~~a~~n~~~n~~~-~~~~~~~~~~~~--- 220 (288)
T TIGR00406 150 LEWLEDLD--LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDI--DPLAVESARKNAELNQVS-DRLQVKLIYLEQ--- 220 (288)
T ss_pred HHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEEC--CHHHHHHHHHHHHHcCCC-cceEEEeccccc---
Confidence 34555443 257899999999 99999999996 899999999 787888899999999997 888887764211
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
...+++|+||+.... +.+.- +.. .+.+.|+|||.++
T Consensus 221 --~~~~~fDlVvan~~~---------~~l~~-ll~-~~~~~LkpgG~li 256 (288)
T TIGR00406 221 --PIEGKADVIVANILA---------EVIKE-LYP-QFSRLVKPGGWLI 256 (288)
T ss_pred --ccCCCceEEEEecCH---------HHHHH-HHH-HHHHHcCCCcEEE
Confidence 124689999987521 11210 111 2234799999875
No 177
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.50 E-value=1.2e-06 Score=94.76 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc-C-
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV-D- 144 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~-~- 144 (694)
+.+|||+|||+|.+++.+++.. .+|+|+|.+++|++.|++|++.|++. +++++.++..++.... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~------------~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~ 264 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF------------RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGV 264 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC------------CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhc
Confidence 3579999999999999988875 38999999999999999999999996 7999999987743210 0
Q ss_pred --C---------CCCccEEEEccccccccCCChHHHHHHHH
Q 044245 145 --I---------DSRADILVSEILDSELLGEGLIPTLQHAH 174 (694)
Q Consensus 145 --l---------~~~~DlIvse~~~~~l~~e~~l~~l~~~~ 174 (694)
+ ..++|+|+.+|.-. ++.+.+.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~d~v~lDPPR~-----G~~~~~l~~l 300 (353)
T TIGR02143 265 REFRRLKGIDLKSYNCSTIFVDPPRA-----GLDPDTCKLV 300 (353)
T ss_pred cccccccccccccCCCCEEEECCCCC-----CCcHHHHHHH
Confidence 0 12489999998753 3344444444
No 178
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.49 E-value=1.1e-06 Score=85.83 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=75.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++..|||--||+|.+.+.++..+..... .......+++|+|+++.+++.|++|++..|+.+.|.+.+.|..+++.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~-~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~-- 102 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPP-LNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL-- 102 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTST-TTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG--
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCccc-ccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc--
Confidence 456889999999999999999988862100 00000224899999999999999999999999999999999999873
Q ss_pred CCCCCccEEEEccccccccCC-----ChHHHHHHHHHhccCC
Q 044245 144 DIDSRADILVSEILDSELLGE-----GLIPTLQHAHDRLLVE 180 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e-----~~l~~l~~~~~~~L~p 180 (694)
..+.+|.||+|+....-++. .....+...+.+.|++
T Consensus 103 -~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 103 -PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred -ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 23689999999866433331 2233455666667776
No 179
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.47 E-value=1.5e-06 Score=90.65 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEeccccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--M-GRNIKVINKRSDELEVG 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l-~~~I~vi~~~~~~l~~~ 142 (694)
.+++||+||||+|.++..+++... ..+|+++|+++.+++.|++.....+ + ..+++++.+|..+...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~----------~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~- 140 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS----------VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA- 140 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC----------cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH-
Confidence 357999999999999888887652 2589999999999999999875432 2 2478888888765421
Q ss_pred cCCCCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcCceE
Q 044245 143 VDIDSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
..+++||+|+++........+. ....+.+.+++.|+|||+++-....
T Consensus 141 -~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 141 -DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred -hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 1246899999976532211122 1345566677899999999876443
No 180
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.43 E-value=1.3e-06 Score=86.07 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=77.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC--Ccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ--QKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~--~~~vD 481 (694)
+++.|||+++| |.+++.|++.| |++|+++|. ++.+.++++++++.|+++ ++++++++++.+.-. .+. ....|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~--~~~a~~~~~~N~~~~~~~-~~~~~~~~D~~~~l~-~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEED--DRKANQTLKENLALLKSG-EQAEVVRNSALRALK-FLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeC--CHHHHHHHHHHHHHhCCc-ccEEEEehhHHHHHH-HhhccCCCce
Confidence 57899999999 99999999996 899999999 778888899999999997 789999998744311 121 12479
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|+.-|.|.. ...+ ..+.. ... ..||+++|.++
T Consensus 124 vv~~DPPy~~--~~~~-~~l~~-l~~---~~~l~~~~iiv 156 (189)
T TIGR00095 124 VIYLDPPFFN--GALQ-ALLEL-CEN---NWILEDTVLIV 156 (189)
T ss_pred EEEECcCCCC--CcHH-HHHHH-HHH---CCCCCCCeEEE
Confidence 9999987762 3332 22211 111 24788888655
No 181
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.42 E-value=1.5e-07 Score=91.93 Aligned_cols=126 Identities=18% Similarity=0.106 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHHhh----ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 48 NDSYRNRAYRLAIDKM----VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 48 ~D~~r~~~y~~ai~~~----~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
+...+++.|..++.+. +.+|.+|||-++|-|..++.++++|+ .+|+.+|.+++.+++|+-|-=..
T Consensus 112 hrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-----------~~VitvEkdp~VLeLa~lNPwSr 180 (287)
T COG2521 112 HRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGA-----------IHVITVEKDPNVLELAKLNPWSR 180 (287)
T ss_pred ecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCC-----------cEEEEEeeCCCeEEeeccCCCCc
Confidence 3344566778888774 34689999999999999999999997 79999999999999887542222
Q ss_pred CC-CCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 124 GM-GRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 124 gl-~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++ +.+|+++.||+.++-- +--++.||+|+.++.-..+-+|-.-..+-..+.|.|+|||.++
T Consensus 181 ~l~~~~i~iilGD~~e~V~-~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 181 ELFEIAIKIILGDAYEVVK-DFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred cccccccEEecccHHHHHh-cCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 22 2368999999887642 1123679999999977666676666677777888999999987
No 182
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.9e-06 Score=94.89 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC
Q 044245 48 NDSYRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG 126 (694)
Q Consensus 48 ~D~~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~ 126 (694)
|-..--..|..++.-+ ..++.+|||+-||.|.+++.+|+.. .+|+|+|+++++++.|++|++.||+.
T Consensus 274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~------------~~V~gvEi~~~aV~~A~~NA~~n~i~ 341 (432)
T COG2265 274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV------------KKVHGVEISPEAVEAAQENAAANGID 341 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC------------CEEEEEecCHHHHHHHHHHHHHcCCC
Confidence 4444333444444443 3356899999999999999999775 49999999999999999999999997
Q ss_pred CcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHH
Q 044245 127 RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHD 175 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~ 175 (694)
|++++.++.+++........++|.||.+|.-.++ -+.+.+.+.
T Consensus 342 -N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~ 384 (432)
T COG2265 342 -NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLA 384 (432)
T ss_pred -cEEEEeCCHHHHhhhccccCCCCEEEECCCCCCC-----CHHHHHHHH
Confidence 5999999999876422223578999999877543 444555444
No 183
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.41 E-value=1.5e-06 Score=86.06 Aligned_cols=77 Identities=23% Similarity=0.198 Sum_probs=56.8
Q ss_pred HHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc
Q 044245 59 AIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE 138 (694)
Q Consensus 59 ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~ 138 (694)
.+.+.+.++.+|||||||+|.++..+++... ..++++|.++.|++.|++ + +++++.++..+
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~-----------~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~ 66 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQ-----------VRGYGIEIDQDGVLACVA----R----GVNVIQGDLDE 66 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccC-----------CcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhh
Confidence 3444566788999999999999988876643 478999999999988764 2 36677788765
Q ss_pred -cccccCCCCCccEEEEcc
Q 044245 139 -LEVGVDIDSRADILVSEI 156 (694)
Q Consensus 139 -l~~~~~l~~~~DlIvse~ 156 (694)
+.. ..+++||+|++..
T Consensus 67 ~l~~--~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 67 GLEA--FPDKSFDYVILSQ 83 (194)
T ss_pred cccc--cCCCCcCEEEEhh
Confidence 221 1136899999863
No 184
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.39 E-value=1.1e-06 Score=91.80 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=62.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ +|+|+|.++.|++.++++... ++++++++|..++..+.
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~------------~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA------------KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE 103 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC------------cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH
Confidence 45678999999999999999999864 899999999999999876532 48999999998876421
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
. ..+.||+|+.+
T Consensus 104 -~--~~~~vv~NlPY 115 (272)
T PRK00274 104 -L--QPLKVVANLPY 115 (272)
T ss_pred -c--CcceEEEeCCc
Confidence 1 15899998765
No 185
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.35 E-value=1.4e-06 Score=89.95 Aligned_cols=91 Identities=18% Similarity=0.130 Sum_probs=67.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |+|++.+++.| +.+|++++. ++.+.+.+++.++.|++. +++++..+. .++|+|
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDi--s~~~l~~A~~n~~~~~~~-~~~~~~~~~-----------~~fD~V 183 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDI--DPQAVEAARENAELNGVE-LNVYLPQGD-----------LKADVI 183 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEEC--CHHHHHHHHHHHHHcCCC-ceEEEccCC-----------CCcCEE
Confidence 57899999999 99999999986 788999999 787778889999999996 677765541 168999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-.. . +.+.- +. ..+.+.|+|||.++
T Consensus 184 vani~--------~-~~~~~-l~-~~~~~~LkpgG~li 210 (250)
T PRK00517 184 VANIL--------A-NPLLE-LA-PDLARLLKPGGRLI 210 (250)
T ss_pred EEcCc--------H-HHHHH-HH-HHHHHhcCCCcEEE
Confidence 87541 1 11110 11 12234699999877
No 186
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.35 E-value=1.4e-06 Score=86.69 Aligned_cols=104 Identities=13% Similarity=0.011 Sum_probs=75.8
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
+.++.|||+||| |+||--.|+.| ..|++++. ++.+-++|+.-+..||+. |+-.+..+|++... +++.||
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~--se~~I~~Ak~ha~e~gv~---i~y~~~~~edl~~~---~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG--ASVTGIDA--SEKPIEVAKLHALESGVN---IDYRQATVEDLASA---GGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC--CeeEEecC--ChHHHHHHHHhhhhcccc---ccchhhhHHHHHhc---CCCccE
Confidence 578899999999 99999999997 68999999 666667888888888884 66677777777642 379999
Q ss_pred EEc-cccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEE
Q 044245 483 LIG-EPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 483 ivs-E~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
|+| |. + |-+-.-++ +.|+. .+++||||.++=+...
T Consensus 128 V~cmEV--l--EHv~dp~~----~~~~c-~~lvkP~G~lf~STin 163 (243)
T COG2227 128 VTCMEV--L--EHVPDPES----FLRAC-AKLVKPGGILFLSTIN 163 (243)
T ss_pred EEEhhH--H--HccCCHHH----HHHHH-HHHcCCCcEEEEeccc
Confidence 999 53 1 11111011 23332 2369999999877665
No 187
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=2.1e-06 Score=88.34 Aligned_cols=112 Identities=11% Similarity=0.071 Sum_probs=78.9
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.+-..+.+|+.||||||| |-|++.||+.= -.+|+++.- |+-..+.+++-++.-|++ ++|+|+-.+-.+++
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTl--S~~Q~~~~~~r~~~~gl~-~~v~v~l~d~rd~~--- 135 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTL--SEEQLAYAEKRIAARGLE-DNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeC--CHHHHHHHHHHHHHcCCC-cccEEEeccccccc---
Confidence 45555666789999999999 99999999872 268999988 666667788888889998 89999776544443
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
+++|-|||=.+|... |.=.|..+ +.+ ..++|+|||+++=+
T Consensus 136 ---e~fDrIvSvgmfEhv-g~~~~~~f---f~~--~~~~L~~~G~~llh 175 (283)
T COG2230 136 ---EPFDRIVSVGMFEHV-GKENYDDF---FKK--VYALLKPGGRMLLH 175 (283)
T ss_pred ---cccceeeehhhHHHh-CcccHHHH---HHH--HHhhcCCCceEEEE
Confidence 569999996655421 22112211 222 23479999988644
No 188
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.32 E-value=2.8e-06 Score=84.09 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=60.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++.+|||+|+| |.+++.++..| |.+|+++|. ++.+.+.++++++.||++ +++++.+++.+.-. .. .++.|+|
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~--~~~a~~~a~~Nl~~~~~~--~v~~~~~D~~~~l~-~~-~~~fDlV 125 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEM--DRAVAQQLIKNLATLKAG--NARVVNTNALSFLA-QP-GTPHNVV 125 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEEC--CHHHHHHHHHHHHHhCCC--cEEEEEchHHHHHh-hc-CCCceEE
Confidence 56789999999 99999765555 789999999 788888899999999984 79999987654321 11 2468999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
++.|
T Consensus 126 ~~DP 129 (199)
T PRK10909 126 FVDP 129 (199)
T ss_pred EECC
Confidence 9995
No 189
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.31 E-value=2.5e-06 Score=84.76 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=73.5
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
....++..|||+|+| |.+++.+|+. |+..+|+++|. ++.+.+.+++.++.||+. ++++++.++..+.- ..+ ..
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~--~~~~~~~a~~n~~~~g~~-~~v~~~~~d~~~~l-~~~-~~ 110 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDK--DEKAINLTRRNAEKFGVL-NNIVLIKGEAPEIL-FTI-NE 110 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHhCCC-CCeEEEEechhhhH-hhc-CC
Confidence 344577899999999 9999999875 43579999999 777777889899999976 78999988765431 112 25
Q ss_pred cccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++|.|++.... ..+. ..| . ...+.|+|||+++
T Consensus 111 ~~D~V~~~~~~----~~~~-~~l---~---~~~~~LkpgG~lv 142 (198)
T PRK00377 111 KFDRIFIGGGS----EKLK-EII---S---ASWEIIKKGGRIV 142 (198)
T ss_pred CCCEEEECCCc----ccHH-HHH---H---HHHHHcCCCcEEE
Confidence 79999985411 1111 222 1 1123589999877
No 190
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.30 E-value=3e-06 Score=85.11 Aligned_cols=108 Identities=15% Similarity=-0.046 Sum_probs=78.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH-------HHcC----CCCcEEEEe
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL-------HVNG----MGRNIKVIN 133 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~-------~~ng----l~~~I~vi~ 133 (694)
.++.+||+.|||.|.-..++|+.|. +|+|+|.|+.+++.+.+.. +.+. -..+|++++
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~------------~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV------------KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV 109 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC------------cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEE
Confidence 3568999999999999999999985 8999999999998875521 0000 124799999
Q ss_pred ccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+|..++.......++||+|.--..- +.+...+.+.....+.++|+|||.++
T Consensus 110 gD~f~l~~~~~~~~~fD~VyDra~~-~Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 110 ADIFNLPKIANNLPVFDIWYDRGAY-IALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred ccCcCCCccccccCCcCeeeeehhH-hcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 9999885322223589997642111 23355566677777788999999864
No 191
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.30 E-value=2.3e-06 Score=82.62 Aligned_cols=77 Identities=22% Similarity=0.148 Sum_probs=57.1
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
+.|...+.+|.+|||+|||.|.|...+.+.- ..+.+|+|++++.+..+.+ +| +.++++|++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k-----------~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld 65 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEK-----------QVDGYGVEIDPDNVAACVA----RG----VSVIQGDLD 65 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhc-----------CCeEEEEecCHHHHHHHHH----cC----CCEEECCHH
Confidence 4677788999999999999998887777643 3689999999987655543 45 458999987
Q ss_pred ccccccCCCCCccEEEE
Q 044245 138 ELEVGVDIDSRADILVS 154 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvs 154 (694)
+-- ..-.++.||.||.
T Consensus 66 ~gL-~~f~d~sFD~VIl 81 (193)
T PF07021_consen 66 EGL-ADFPDQSFDYVIL 81 (193)
T ss_pred HhH-hhCCCCCccEEeh
Confidence 622 1122368998875
No 192
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.30 E-value=2.3e-06 Score=89.06 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..+|..||||||| |-+++.+|+. | + +|+++.- |+...+++++-++..|++ ++|+|...+-.+++ .+.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g-~-~v~gitl--S~~Q~~~a~~~~~~~gl~-~~v~v~~~D~~~~~------~~f 128 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYG-C-HVTGITL--SEEQAEYARERIREAGLE-DRVEVRLQDYRDLP------GKF 128 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES---HHHHHHHHHHHHCSTSS-STEEEEES-GGG---------S-
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC-c-EEEEEEC--CHHHHHHHHHHHHhcCCC-CceEEEEeeccccC------CCC
Confidence 4578899999999 8888888887 6 4 7999988 676677888889999998 99999887644432 489
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
|.|||=..+. .|-+ .++.-++ .+..++|+|||+++=
T Consensus 129 D~IvSi~~~E---hvg~-~~~~~~f--~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 129 DRIVSIEMFE---HVGR-KNYPAFF--RKISRLLKPGGRLVL 164 (273)
T ss_dssp SEEEEESEGG---GTCG-GGHHHHH--HHHHHHSETTEEEEE
T ss_pred CEEEEEechh---hcCh-hHHHHHH--HHHHHhcCCCcEEEE
Confidence 9999954333 3333 3332112 233458999998653
No 193
>PLN02823 spermine synthase
Probab=98.30 E-value=5.2e-06 Score=88.63 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=84.6
Q ss_pred HHHHHHHhh----ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--C-CC
Q 044245 55 AYRLAIDKM----VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--M-GR 127 (694)
Q Consensus 55 ~y~~ai~~~----~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l-~~ 127 (694)
.|.+.+... ....++||.||+|.|.++..+.+... ..+|++||+++.+++.|++....++ + ..
T Consensus 88 ~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~----------~~~v~~VEiD~~vv~lar~~~~~~~~~~~dp 157 (336)
T PLN02823 88 VYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKT----------VEKVVMCDIDQEVVDFCRKHLTVNREAFCDK 157 (336)
T ss_pred HHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCC----------CCeEEEEECCHHHHHHHHHhcccccccccCC
Confidence 355555432 12357999999999999998888643 3589999999999999999876432 2 35
Q ss_pred cEEEEeccccccccccCCCCCccEEEEccccccccC--C-ChHHHHHH-HHHhccCCCCeEEcC
Q 044245 128 NIKVINKRSDELEVGVDIDSRADILVSEILDSELLG--E-GLIPTLQH-AHDRLLVENPLTVPC 187 (694)
Q Consensus 128 ~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~--e-~~l~~l~~-~~~~~L~p~G~iiP~ 187 (694)
+++++.+|....-. ...++||+|+.+..+....+ . -.-..+.. ..++.|+|||+++-+
T Consensus 158 rv~v~~~Da~~~L~--~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 158 RLELIINDARAELE--KRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ceEEEEChhHHHHh--hCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 99999999877542 23468999999864421101 0 11223444 667899999998654
No 194
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.29 E-value=2.4e-06 Score=84.72 Aligned_cols=111 Identities=5% Similarity=-0.069 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.|.+.+...++..|||+||| |.++.++|+.| .+|++++. ++.+.+.+++.++.+|++ +++........
T Consensus 19 ~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~--s~~~l~~a~~~~~~~~~~---v~~~~~d~~~~-- 89 (195)
T TIGR00477 19 HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG--YDVRAWDH--NPASIASVLDMKARENLP---LRTDAYDINAA-- 89 (195)
T ss_pred hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC--CeEEEEEC--CHHHHHHHHHHHHHhCCC---ceeEeccchhc--
Confidence 4455566655566789999999 99999999986 48999999 676667777777778774 45444432222
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.+ ++++|+|++...+.. ++-..+.- +. ..+.++|+|||.++
T Consensus 90 -~~-~~~fD~I~~~~~~~~----~~~~~~~~-~l-~~~~~~LkpgG~ll 130 (195)
T TIGR00477 90 -AL-NEDYDFIFSTVVFMF----LQAGRVPE-II-ANMQAHTRPGGYNL 130 (195)
T ss_pred -cc-cCCCCEEEEeccccc----CCHHHHHH-HH-HHHHHHhCCCcEEE
Confidence 23 357999999864331 11011110 11 22234799999744
No 195
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.29 E-value=1.7e-06 Score=82.21 Aligned_cols=77 Identities=23% Similarity=0.162 Sum_probs=58.0
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.+|+|+.||.|.-++.+|+.+. +|+|||+++..++.|+.|++..|..++|+++++|+.++........
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~------------~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~ 68 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD------------RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNK 68 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----
T ss_pred CEEEEeccCcCHHHHHHHHhCC------------eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccc
Confidence 3799999999999999999975 9999999999999999999999999999999999988642111111
Q ss_pred CccEEEEcc
Q 044245 148 RADILVSEI 156 (694)
Q Consensus 148 ~~DlIvse~ 156 (694)
.+|+|+..|
T Consensus 69 ~~D~vFlSP 77 (163)
T PF09445_consen 69 IFDVVFLSP 77 (163)
T ss_dssp --SEEEE--
T ss_pred cccEEEECC
Confidence 289998765
No 196
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.29 E-value=4.7e-06 Score=90.26 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=77.1
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.+|||+.||+|..++.+++.++ +..+|+++|+|+.+++.+++|++.|++. +++++++|...+.. ...+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~---------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~--~~~~ 113 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIE---------GVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLR--YRNR 113 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHH--HhCC
Confidence 5899999999999999999832 1268999999999999999999999986 79999999887642 1235
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+||+|..+++++ ...+++..-+.++++|.+.-
T Consensus 114 ~fDvIdlDPfGs-------~~~fld~al~~~~~~glL~v 145 (374)
T TIGR00308 114 KFHVIDIDPFGT-------PAPFVDSAIQASAERGLLLV 145 (374)
T ss_pred CCCEEEeCCCCC-------cHHHHHHHHHhcccCCEEEE
Confidence 799999988652 11233333346778887653
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.26 E-value=4.4e-06 Score=81.52 Aligned_cols=102 Identities=26% Similarity=0.324 Sum_probs=82.5
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSR 148 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~ 148 (694)
+++|||+|.|.-++.+|-..+ ..+++.+|.+..-+...+..++.-|++ +++++++++++. ...++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p----------~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~----~~~~~ 115 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP----------DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEP----EYRES 115 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T----------TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHT----TTTT-
T ss_pred eEEecCCCCCChhHHHHHhCC----------CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeeccc----ccCCC
Confidence 899999999999999998875 578999999999999999999999997 899999999981 23478
Q ss_pred ccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 149 ADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 149 ~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
||+|++--+.. ++.+......+|++||.++...+.-+
T Consensus 116 fd~v~aRAv~~-------l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 116 FDVVTARAVAP-------LDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp EEEEEEESSSS-------HHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred ccEEEeehhcC-------HHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 99999965542 67778888889999999887766543
No 198
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.24 E-value=6.2e-06 Score=81.88 Aligned_cols=108 Identities=7% Similarity=-0.028 Sum_probs=72.0
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+.+.....+++.|||+||| |.+++..|+.| .+|+++|. ++.+.+.+++.++.+++. +|+++.....++. +
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~--S~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~~---~ 92 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANG--FDVTAWDK--NPMSIANLERIKAAENLD--NLHTAVVDLNNLT---F 92 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCC--CEEEEEeC--CHHHHHHHHHHHHHcCCC--cceEEecChhhCC---c
Confidence 3344444466789999999 99999999985 48999999 777777788888888885 4777766544432 2
Q ss_pred CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 476 QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 476 ~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
++++|+|++-..+. .++-+.+. ..-.++.++|+|||.+
T Consensus 93 -~~~fD~I~~~~~~~----~~~~~~~~--~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 93 -DGEYDFILSTVVLM----FLEAKTIP--GLIANMQRCTKPGGYN 130 (197)
T ss_pred -CCCcCEEEEecchh----hCCHHHHH--HHHHHHHHHcCCCcEE
Confidence 35799999875322 12201111 1122334579999974
No 199
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.23 E-value=5.1e-06 Score=88.35 Aligned_cols=101 Identities=17% Similarity=0.092 Sum_probs=69.8
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
+++..||||||| |.++...|+.| .+|+++|. ++.+.+.+++.++.+++. ++|+++.+..+++.. ..++.|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~--s~~~i~~Ar~~~~~~~~~-~~i~~~~~dae~l~~---~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG--ATVTGVDA--VDKNVKIARLHADMDPVT-STIEYLCTTAEKLAD---EGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeC--CHHHHHHHHHHHHhcCcc-cceeEEecCHHHhhh---ccCCCCE
Confidence 456789999999 99999888885 48999999 666666777666666665 689999998776643 2468999
Q ss_pred EEcc-ccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGE-PYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE-~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|++- .+.. +-+ .-.| -..+.++|||||.++
T Consensus 202 Vi~~~vLeH----v~d--~~~~---L~~l~r~LkPGG~li 232 (322)
T PLN02396 202 VLSLEVIEH----VAN--PAEF---CKSLSALTIPNGATV 232 (322)
T ss_pred EEEhhHHHh----cCC--HHHH---HHHHHHHcCCCcEEE
Confidence 9983 2111 111 1111 112334799999776
No 200
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.23 E-value=1.9e-06 Score=85.08 Aligned_cols=98 Identities=18% Similarity=0.134 Sum_probs=64.9
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
..++|+|||+|..+..+|... .+|+|+|.|+.|++.|++.-...-..-..+....+..++..+ ++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~------------k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~---e~ 99 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY------------KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG---EE 99 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh------------hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC---Cc
Confidence 489999999998888888875 489999999999999887543222211233333333333322 47
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCC-eE
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENP-LT 184 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G-~i 184 (694)
++|+|++.- .++=-.++.+.....|+|+++| ++
T Consensus 100 SVDlI~~Aq----a~HWFdle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 100 SVDLITAAQ----AVHWFDLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred ceeeehhhh----hHHhhchHHHHHHHHHHcCCCCCEE
Confidence 999998731 1111126677777788999877 44
No 201
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.22 E-value=4.6e-06 Score=79.07 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=76.2
Q ss_pred CCCcEEEecCC-chHHHHHH-HcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 405 VQPLCVVADDS-VFLTICVA-RLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA-~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
++..|||+||| |.++...+ +.+...+|+.+|- ++.+.+.+++.++.+++. ++++++++.+++... ++ +++|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~--s~~~i~~a~~~~~~~~~~--ni~~~~~d~~~l~~~-~~-~~~D~ 76 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDI--SEEMIEYAKKRAKELGLD--NIEFIQGDIEDLPQE-LE-EKFDI 76 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEES--SHHHHHHHHHHHHHTTST--TEEEEESBTTCGCGC-SS-TTEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEEC--cHHHHHHhhccccccccc--ccceEEeehhccccc-cC-CCeeE
Confidence 46789999999 98888888 5543578999999 777778889999999994 899999988876532 33 78999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
|++-..+.. +-. .. ..-.++.++|+++|+++-....
T Consensus 77 I~~~~~l~~---~~~---~~--~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 77 IISNGVLHH---FPD---PE--KVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEESTGGG---TSH---HH--HHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEcCchhh---ccC---HH--HHHHHHHHHcCCCcEEEEEECC
Confidence 999853321 111 10 1111233469999987755444
No 202
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.21 E-value=3.2e-06 Score=80.85 Aligned_cols=97 Identities=25% Similarity=0.277 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.|++|||+|+|+|+.++.++++|+ ..|++.|+.+...+.++.|+++||. .|.++..+.-. .
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA-----------~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g------~ 139 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA-----------AEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG------S 139 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh-----------HHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC------C
Confidence 379999999999999999999998 7899999999999999999999997 48887766543 2
Q ss_pred CCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~ii 185 (694)
+..+|+++. .-++++. .-..++...+++...|..++
T Consensus 140 ~~~~Dl~La----gDlfy~~~~a~~l~~~~~~l~~~g~~vl 176 (218)
T COG3897 140 PPAFDLLLA----GDLFYNHTEADRLIPWKDRLAEAGAAVL 176 (218)
T ss_pred CcceeEEEe----eceecCchHHHHHHHHHHHHHhCCCEEE
Confidence 368999876 2233333 33445554444444444443
No 203
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.20 E-value=4.6e-06 Score=83.63 Aligned_cols=79 Identities=24% Similarity=0.212 Sum_probs=68.2
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.++++..||++|-|||.|+..+..+|+ +|+|||+++.|+...++..+....+.+.+++.+|....++
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~k------------kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGK------------KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC------------eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 477889999999999999999999986 9999999999999998888755556899999999877653
Q ss_pred cCCCCCccEEEEcccc
Q 044245 143 VDIDSRADILVSEILD 158 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~ 158 (694)
..||++|+++.+
T Consensus 122 ----P~fd~cVsNlPy 133 (315)
T KOG0820|consen 122 ----PRFDGCVSNLPY 133 (315)
T ss_pred ----cccceeeccCCc
Confidence 379999998654
No 204
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.20 E-value=3.4e-06 Score=91.26 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=67.5
Q ss_pred HhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC
Q 044245 45 DMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG 124 (694)
Q Consensus 45 ~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng 124 (694)
-..|-..-...|..++..+-..+..|||+.||+|.+|+.+|+.+. +|+|+|.++.+++.|++|++.|+
T Consensus 175 fQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~------------~V~gvE~~~~av~~A~~Na~~N~ 242 (352)
T PF05958_consen 175 FQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK------------KVIGVEIVEEAVEDARENAKLNG 242 (352)
T ss_dssp --SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS------------EEEEEES-HHHHHHHHHHHHHTT
T ss_pred ccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC------------eEEEeeCCHHHHHHHHHHHHHcC
Confidence 344555544555555554322234899999999999999998864 99999999999999999999999
Q ss_pred CCCcEEEEeccccccccc------------cCC-CCCccEEEEccccccc
Q 044245 125 MGRNIKVINKRSDELEVG------------VDI-DSRADILVSEILDSEL 161 (694)
Q Consensus 125 l~~~I~vi~~~~~~l~~~------------~~l-~~~~DlIvse~~~~~l 161 (694)
+. +++++.++.+++... ..+ ..++|+|+.+|.-.++
T Consensus 243 i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 243 ID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp ---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred CC-cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 96 899999887654210 001 1368999998877544
No 205
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=7.5e-06 Score=78.34 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
+|--.....--...|+.|+|+||| |+|++-|+-.| |++|+++|. .+.+.+++++++.+ +. ++|+++..+++++
T Consensus 32 a~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdi--D~~a~ei~r~N~~~--l~-g~v~f~~~dv~~~ 105 (198)
T COG2263 32 AYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDI--DPEALEIARANAEE--LL-GDVEFVVADVSDF 105 (198)
T ss_pred HHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEec--CHHHHHHHHHHHHh--hC-CceEEEEcchhhc
Confidence 333333333344578899999999 99999999997 999999999 67777888888887 43 7899999877766
Q ss_pred cccccCCccccEEEccc
Q 044245 471 TMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~ 487 (694)
. .++|++|..|
T Consensus 106 ~------~~~dtvimNP 116 (198)
T COG2263 106 R------GKFDTVIMNP 116 (198)
T ss_pred C------CccceEEECC
Confidence 4 5688888885
No 206
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.19 E-value=1.1e-05 Score=72.97 Aligned_cols=103 Identities=16% Similarity=0.034 Sum_probs=69.9
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+++.|||+|+| |.++..+++..+..+|+++|. ++.+.+.+++.++.+++. +++++.+...+... .. .+++|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~-~~-~~~~D~ 91 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIER--NPEALRLIERNARRFGVS--NIVIVEGDAPEALE-DS-LPEPDR 91 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcC--CHHHHHHHHHHHHHhCCC--ceEEEeccccccCh-hh-cCCCCE
Confidence 346789999999 988888888633589999999 777777888888888884 68888776543211 12 368999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
|++..-. .... + +.+. ..++|+|||.++-.
T Consensus 92 v~~~~~~----~~~~-~-----~l~~-~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 92 VFIGGSG----GLLQ-E-----ILEA-IWRRLRPGGRIVLN 121 (124)
T ss_pred EEECCcc----hhHH-H-----HHHH-HHHHcCCCCEEEEE
Confidence 9986410 1111 1 1111 23479999987643
No 207
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.19 E-value=7.5e-06 Score=80.53 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=58.8
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+||| |.+++.+|+.+...+|+++|. ++.+.+.+++.++.|++. +|+++.+.... .+ +++.|+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~--s~~~~~~a~~n~~~~~~~--~i~~~~~d~~~----~~-~~~~D~ 100 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIER--NPDALRLIKENRQRFGCG--NIDIIPGEAPI----EL-PGKADA 100 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHhCCC--CeEEEecCchh----hc-CcCCCE
Confidence 356789999999 999999888754579999999 777777888888888884 69999876431 22 357999
Q ss_pred EEccc
Q 044245 483 LIGEP 487 (694)
Q Consensus 483 ivsE~ 487 (694)
|++..
T Consensus 101 v~~~~ 105 (187)
T PRK08287 101 IFIGG 105 (187)
T ss_pred EEECC
Confidence 99753
No 208
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=1.5e-05 Score=78.56 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc---c
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV---G 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~---~ 142 (694)
..+++||||.=||.-++..|.+-+ +.++|+++|+++...+.+.+..+..|..++|+++++...+.-. .
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp---------~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~ 143 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALP---------EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA 143 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcC---------CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh
Confidence 478999999999999999999876 4689999999999999999999999999999999999765321 1
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
....+.||.++.+--- ........+.+ +++++||+++-+..-..+ +|..+
T Consensus 144 ~~~~~tfDfaFvDadK-----~nY~~y~e~~l-~Llr~GGvi~~DNvl~~G-~v~~p 193 (237)
T KOG1663|consen 144 DGESGTFDFAFVDADK-----DNYSNYYERLL-RLLRVGGVIVVDNVLWPG-VVADP 193 (237)
T ss_pred cCCCCceeEEEEccch-----HHHHHHHHHHH-hhcccccEEEEeccccCC-cccCc
Confidence 1123679999864211 22333444454 499999999998887777 55544
No 209
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.18 E-value=1.4e-05 Score=79.93 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=61.2
Q ss_pred HHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC
Q 044245 399 NALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ 476 (694)
Q Consensus 399 ~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~ 476 (694)
+.....++..|||+||| |.++..+|+. +...+|+++|. ++.+.+.+++.++.+++. ++++++.++..+.-. .
T Consensus 66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~--~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~~---~ 139 (205)
T PRK13944 66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEI--VKELAIYAAQNIERLGYW-GVVEVYHGDGKRGLE---K 139 (205)
T ss_pred HhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeC--CHHHHHHHHHHHHHcCCC-CcEEEEECCcccCCc---c
Confidence 33344467789999999 9888777764 32458999999 666666788888899987 789999987653221 1
Q ss_pred CccccEEEccc
Q 044245 477 QKKVDLLIGEP 487 (694)
Q Consensus 477 ~~~vDvivsE~ 487 (694)
..+.|+|++..
T Consensus 140 ~~~fD~Ii~~~ 150 (205)
T PRK13944 140 HAPFDAIIVTA 150 (205)
T ss_pred CCCccEEEEcc
Confidence 35799998874
No 210
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.18 E-value=1.1e-05 Score=82.06 Aligned_cols=117 Identities=11% Similarity=0.038 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
...+++++.+.....+++.|||+||| |.++...++. |...+|+++|. ++.+.+.+++.++.+++ ++++++.++.
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~--~~v~~~~~d~ 105 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDF--SENMLSVGRQKVKDAGL--HNVELVHGNA 105 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHhcCC--CceEEEEech
Confidence 44455666666655567899999999 8877777664 43469999999 66666677877777787 4799999887
Q ss_pred ccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 468 KCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+++. ++.+++|+|++-..+. . ++ .... ..+. ..+.|+|||.++
T Consensus 106 ~~~~---~~~~~fD~V~~~~~l~---~-~~-~~~~--~l~~-~~~~Lk~gG~l~ 148 (231)
T TIGR02752 106 MELP---FDDNSFDYVTIGFGLR---N-VP-DYMQ--VLRE-MYRVVKPGGKVV 148 (231)
T ss_pred hcCC---CCCCCccEEEEecccc---c-CC-CHHH--HHHH-HHHHcCcCeEEE
Confidence 6653 2346899998753111 1 11 1111 1111 234699999875
No 211
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.17 E-value=7e-06 Score=81.16 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=75.4
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
..+||||||.|...+.+|+..+ ...++|+|+....+..|.+.+...++. |+.++++++..+....--++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~P----------d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~ 87 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNP----------DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPG 87 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHST----------TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTT
T ss_pred CeEEEecCCCCHHHHHHHHHCC----------CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCC
Confidence 4899999999999999999875 679999999999999999999999996 99999999887431111136
Q ss_pred CccEEEEccccccccC-----CChHHHHHHHHHhccCCCCeE
Q 044245 148 RADILVSEILDSELLG-----EGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~-----e~~l~~l~~~~~~~L~p~G~i 184 (694)
.+|-|.....+-..-. .-.-+.++..+.+.|+|||.+
T Consensus 88 ~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l 129 (195)
T PF02390_consen 88 SVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGEL 129 (195)
T ss_dssp SEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred chheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence 7887765433321110 112346777788899999976
No 212
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=9.4e-06 Score=82.69 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=66.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++..|||||+|.|.|+..+++.++ +|+|+|+++.++...++... ..++++++++|+....++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~------------~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAA------------RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcC------------eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchh
Confidence 55689999999999999999999986 89999999999999887764 3468999999998876532
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
.. +++.||+|+.++
T Consensus 93 l~--~~~~vVaNlPY~ 106 (259)
T COG0030 93 LA--QPYKVVANLPYN 106 (259)
T ss_pred hc--CCCEEEEcCCCc
Confidence 11 689999997764
No 213
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.16 E-value=8.2e-06 Score=84.33 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=61.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+++|.++.+++.++++... ..+++++++|..++..+
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~------------~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK------------KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP- 90 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC------------cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence 35678999999999999999999875 799999999999999876643 35899999999887642
Q ss_pred CCCCCcc---EEEEcccc
Q 044245 144 DIDSRAD---ILVSEILD 158 (694)
Q Consensus 144 ~l~~~~D---lIvse~~~ 158 (694)
.+| +|++++..
T Consensus 91 ----~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 ----DFPKQLKVVSNLPY 104 (253)
T ss_pred ----HcCCcceEEEcCCh
Confidence 355 89987653
No 214
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=7.4e-06 Score=80.81 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=47.2
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~ 121 (694)
.+.+.+....+.-+|||||-+|.+++.+|+... ...|.|||+++..++.|+++++
T Consensus 49 Lk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~----------~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 49 LKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFG----------PRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred hhhccccccCcceeEeccCCcchhHHHHHHhhc----------cceeeEeeccHHHHHHHHHhcc
Confidence 445555566789999999999999999999886 4689999999999999999875
No 215
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.14 E-value=7.1e-06 Score=81.03 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=58.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+|.+|+|+-+| |..++.+|+.+++++|+|+|- ++.|.+++++.++.|+++ ++|++++++..++.. ..+.|-|
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~--Np~a~~~L~~Ni~lNkv~-~~i~~~~~D~~~~~~----~~~~drv 173 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDL--NPDAVEYLKENIRLNKVE-NRIEVINGDAREFLP----EGKFDRV 173 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES---HHHHHHHHHHHHHTT-T-TTEEEEES-GGG-------TT-EEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecC--CHHHHHHHHHHHHHcCCC-CeEEEEcCCHHHhcC----ccccCEE
Confidence 57799999999 999999999666899999999 899999999999999998 999999998776643 3678988
Q ss_pred Ecc
Q 044245 484 IGE 486 (694)
Q Consensus 484 vsE 486 (694)
|.-
T Consensus 174 im~ 176 (200)
T PF02475_consen 174 IMN 176 (200)
T ss_dssp EE-
T ss_pred EEC
Confidence 875
No 216
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.14 E-value=1.1e-06 Score=85.70 Aligned_cols=98 Identities=19% Similarity=0.153 Sum_probs=67.7
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.++||+|||||+.+-.+-... .+.+++|+|.+|++.|.+. |+=+. +.+++...+.. ..-++
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a------------~~ltGvDiS~nMl~kA~eK----g~YD~--L~~Aea~~Fl~-~~~~e 187 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMA------------DRLTGVDISENMLAKAHEK----GLYDT--LYVAEAVLFLE-DLTQE 187 (287)
T ss_pred ceeeecccCcCcccHhHHHHH------------hhccCCchhHHHHHHHHhc----cchHH--HHHHHHHHHhh-hccCC
Confidence 799999999999998876654 4899999999999988763 32221 22233222211 12347
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++|+|++. ..+.+-+.++.+.-....+|+|||.+..+
T Consensus 188 r~DLi~Aa---DVl~YlG~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 188 RFDLIVAA---DVLPYLGALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred cccchhhh---hHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence 99999873 33334455777777778899999988644
No 217
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.12 E-value=1.3e-05 Score=83.01 Aligned_cols=102 Identities=15% Similarity=0.061 Sum_probs=72.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.++...|+.| .+|+++|. ++.+.+.|++.++.+|+. ++++++.+..+++.. ...++.|+|
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~--s~~~l~~a~~~~~~~g~~-~~v~~~~~d~~~l~~--~~~~~fD~V 116 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG--HQVILCDL--SAEMIQRAKQAAEAKGVS-DNMQFIHCAAQDIAQ--HLETPVDLI 116 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC--CEEEEEEC--CHHHHHHHHHHHHhcCCc-cceEEEEcCHHHHhh--hcCCCCCEE
Confidence 35689999999 99999999985 68999999 676667788888888887 799999998776642 224689999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-..+. .++ +-. .+-..+.++|||||.++
T Consensus 117 ~~~~vl~----~~~-~~~---~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 117 LFHAVLE----WVA-DPK---SVLQTLWSVLRPGGALS 146 (255)
T ss_pred EehhHHH----hhC-CHH---HHHHHHHHHcCCCeEEE
Confidence 9753111 111 111 11122345799999873
No 218
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.12 E-value=1.4e-05 Score=80.44 Aligned_cols=80 Identities=10% Similarity=-0.057 Sum_probs=60.0
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
....++..|||+||| |.++...|+..+ ..+|+++|. ++.+.+.+++.++.+|+ ++|+++.++..+... ...
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~--~~~~~~~A~~~~~~~g~--~~v~~~~~d~~~~~~---~~~ 145 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIER--IPELAEKAERRLRKLGL--DNVIVIVGDGTQGWE---PLA 145 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHCCC--CCeEEEECCcccCCc---ccC
Confidence 334567899999999 999888888642 246999999 66666788888999998 479999887553321 135
Q ss_pred cccEEEccc
Q 044245 479 KVDLLIGEP 487 (694)
Q Consensus 479 ~vDvivsE~ 487 (694)
+.|+|+...
T Consensus 146 ~fD~Ii~~~ 154 (215)
T TIGR00080 146 PYDRIYVTA 154 (215)
T ss_pred CCCEEEEcC
Confidence 799998764
No 219
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.12 E-value=1.8e-05 Score=85.79 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=71.0
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-cccEEEeecccccccccccCCccccEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-IDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+..|||+||| |.+++.+++.+...+|+++|. +++|.+.+++.++.|+.+ .++++++.++.- + .+.++++|+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~--S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l--~--~~~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDE--SPMAVASSRLNVETNMPEALDRCEFMINNAL--S--GVEPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCcccCceEEEEEcccc--c--cCCCCCEEEE
Confidence 3579999999 999999998754579999999 888888899999999864 137888876532 1 2234689999
Q ss_pred Eccc-cccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 484 IGEP-YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 484 vsE~-~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
||-| |...+ .+. ..+..-+.+++ .+.|+|||.+
T Consensus 303 lsNPPfh~~~--~~~-~~ia~~l~~~a-~~~LkpGG~L 336 (378)
T PRK15001 303 LCNPPFHQQH--ALT-DNVAWEMFHHA-RRCLKINGEL 336 (378)
T ss_pred EECcCcccCc--cCC-HHHHHHHHHHH-HHhcccCCEE
Confidence 9985 43321 122 22211122222 2469999953
No 220
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.11 E-value=1.6e-05 Score=84.20 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=71.1
Q ss_pred ChhHHHHHH-HHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHH---HHHHHhccCCcccccE
Q 044245 386 DGEWRLSMV-MAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQ---YLRTVADPNCFSIDRV 460 (694)
Q Consensus 386 D~~r~~~y~-~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~---~~~~i~~~N~l~~~~i 460 (694)
|.+...-.. .++...+...+++.||||||| |.+++.+++.| +++|+++++ ++.+.. .+++.+. -. .++
T Consensus 101 ~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDp--S~~ml~q~~~~~~~~~---~~-~~v 173 (314)
T TIGR00452 101 DSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDP--TVLFLCQFEAVRKLLD---ND-KRA 173 (314)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcC--CHHHHHHHHHHHHHhc---cC-CCe
Confidence 555544333 234445555678999999999 99888888886 889999999 553221 1222221 12 467
Q ss_pred EEeecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 461 EILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 461 ~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.++....+++.. ....|+|+|...... ++ +-.. ..+ .+.+.|+|||.++
T Consensus 174 ~~~~~~ie~lp~----~~~FD~V~s~gvL~H----~~-dp~~--~L~-el~r~LkpGG~Lv 222 (314)
T TIGR00452 174 ILEPLGIEQLHE----LYAFDTVFSMGVLYH----RK-SPLE--HLK-QLKHQLVIKGELV 222 (314)
T ss_pred EEEECCHHHCCC----CCCcCEEEEcchhhc----cC-CHHH--HHH-HHHHhcCCCCEEE
Confidence 888776666542 247999999752211 11 1111 111 2234699999765
No 221
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.11 E-value=1.6e-05 Score=76.42 Aligned_cols=110 Identities=13% Similarity=0.014 Sum_probs=79.7
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
-....+...+|.+++||||| |-++.-+|++|-..||||+|. .+.+.+.++++.++.|. ++++|+++.+-+.-. +
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~--~~~a~~~~~~N~~~fg~--~n~~vv~g~Ap~~L~-~ 99 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIER--DEEALELIERNAARFGV--DNLEVVEGDAPEALP-D 99 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEec--CHHHHHHHHHHHHHhCC--CcEEEEeccchHhhc-C
Confidence 34455666788999999999 999999998877889999999 77778889999999996 699999997654422 2
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcce
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~ 524 (694)
+ .++|.|+-.+= +=++ ..|. .+ ...|+|||+++=+.
T Consensus 100 ~--~~~daiFIGGg-----~~i~-~ile--~~----~~~l~~ggrlV~na 135 (187)
T COG2242 100 L--PSPDAIFIGGG-----GNIE-EILE--AA----WERLKPGGRLVANA 135 (187)
T ss_pred C--CCCCEEEECCC-----CCHH-HHHH--HH----HHHcCcCCeEEEEe
Confidence 2 26898887751 1222 2221 11 11489999876443
No 222
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.10 E-value=5.4e-06 Score=83.32 Aligned_cols=107 Identities=14% Similarity=0.064 Sum_probs=76.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH-------cC----CCCcEEEE
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV-------NG----MGRNIKVI 132 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~-------ng----l~~~I~vi 132 (694)
..++.+||+.|||.|.-.+++|+.|. +|+|+|+|+.+++.+.+.... .+ -.++|+++
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~------------~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGH------------DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTE------------EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCC------------eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 45567999999999999999999984 999999999999887432211 01 12478999
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++|..++.. ...++||+|.=-..- +.+...+.+.....+.++|+|||.++
T Consensus 103 ~gDfF~l~~--~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 103 CGDFFELPP--EDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp ES-TTTGGG--SCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred EcccccCCh--hhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 999988764 223589999853222 23356667777778888999999843
No 223
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=2.1e-05 Score=81.15 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=75.9
Q ss_pred HHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 395 MAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 395 ~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
+.+.++.....+..|+|+||| |.|++.+|+.....+|+-+|. +.+|-+.++++++.|+++ +. +|+.+.. -.
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDv--n~~Av~~ar~Nl~~N~~~-~~-~v~~s~~---~~- 219 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDV--NARAVESARKNLAANGVE-NT-EVWASNL---YE- 219 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEec--CHHHHHHHHHhHHHcCCC-cc-EEEEecc---cc-
Confidence 345566555555589999999 999999999865789999999 888889999999999997 44 6665531 11
Q ss_pred ccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 474 DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 474 ~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
.. .++.|.|||-|=|- +|.--...+---+.+.+. +.|++||.+
T Consensus 220 ~v-~~kfd~IisNPPfh--~G~~v~~~~~~~~i~~A~-~~L~~gGeL 262 (300)
T COG2813 220 PV-EGKFDLIISNPPFH--AGKAVVHSLAQEIIAAAA-RHLKPGGEL 262 (300)
T ss_pred cc-cccccEEEeCCCcc--CCcchhHHHHHHHHHHHH-HhhccCCEE
Confidence 12 24899999996222 332221111001223332 359999954
No 224
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.09 E-value=9.6e-06 Score=86.51 Aligned_cols=131 Identities=12% Similarity=0.054 Sum_probs=79.9
Q ss_pred HHHhhCCHHHHHHHHHHHHhhcc--CCCEEEEEcCCCCH-HHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHH
Q 044245 43 YLDMLNDSYRNRAYRLAIDKMVT--KSCHVLDIGAGTGL-LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKV 119 (694)
Q Consensus 43 ~~~ml~D~~r~~~y~~ai~~~~~--~~~~VLDiG~GtG~-lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~ 119 (694)
+..-+|+.++...+...+.+... ++.+|||||||-|. |..+ .+++. .+++|+|++...++.|+++
T Consensus 37 ~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw-~~~~i-----------~~~vg~Dis~~si~ea~~R 104 (331)
T PF03291_consen 37 HLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKW-QKAKI-----------KHYVGIDISEESIEEARER 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHH-HHTT------------SEEEEEES-HHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHH-HhcCC-----------CEEEEEeCCHHHHHHHHHH
Confidence 45556666655554444443222 67999999999765 5555 44543 6999999999999999998
Q ss_pred HHH---------cCCCCcEEEEeccccccccccC-C--CCCccEEEEcc-ccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 120 LHV---------NGMGRNIKVINKRSDELEVGVD-I--DSRADILVSEI-LDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 120 ~~~---------ngl~~~I~vi~~~~~~l~~~~~-l--~~~~DlIvse~-~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+. ....-...++.+|...-.+... . ..+||+|-+.. +-+..-.|.....++..+...|+|||.+|
T Consensus 105 y~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 105 YKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp HHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 832 1112246677777654332111 1 24899998743 11112224456667788888999999986
No 225
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.09 E-value=9.8e-06 Score=88.73 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=77.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc--CCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT--QQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l--~~~~vD 481 (694)
+++.|||+|+| |.+++.||..| |.+|+++|. ++.+.++++++++.||++.++|+++.+++.+.-. .+ ..++.|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~--s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~-~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDT--SQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR-TYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEEC--CHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHH-HHHhcCCCCC
Confidence 57889999999 88898888764 899999999 7888889999999999952489999997755421 11 135799
Q ss_pred EEEcc-ccccCCccccCcchhh-H-HHHHhhcccccCCCceEEcce
Q 044245 482 LLIGE-PYYFGNDGMLPWQNLR-F-WKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 482 vivsE-~~~~~~e~~l~w~~l~-f-~~~r~~~~~~L~p~g~i~P~~ 524 (694)
+||.. |||.....-+. ..++ | -+.+.+ .++|+|||.++=..
T Consensus 296 lVilDPP~f~~~k~~l~-~~~~~y~~l~~~a-~~lLk~gG~lv~~s 339 (396)
T PRK15128 296 VIVMDPPKFVENKSQLM-GACRGYKDINMLA-IQLLNPGGILLTFS 339 (396)
T ss_pred EEEECCCCCCCChHHHH-HHHHHHHHHHHHH-HHHcCCCeEEEEEe
Confidence 99999 56543111111 1110 0 011111 24799999876444
No 226
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=3.1e-06 Score=76.81 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
+|++++|+|||+|.|+..++-.++ ..|.|+|+++++++.+.+|+....+ ++.+++.+..++.+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~-----------e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~--- 111 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN-----------ESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELK--- 111 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC-----------ceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhcc---
Confidence 589999999999999977666554 6899999999999999999988777 579999999887652
Q ss_pred CCCccEEEEcc
Q 044245 146 DSRADILVSEI 156 (694)
Q Consensus 146 ~~~~DlIvse~ 156 (694)
.+.||..|-|+
T Consensus 112 ~g~fDtaviNp 122 (185)
T KOG3420|consen 112 GGIFDTAVINP 122 (185)
T ss_pred CCeEeeEEecC
Confidence 27899888776
No 227
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.08 E-value=2.4e-05 Score=78.57 Aligned_cols=79 Identities=10% Similarity=0.025 Sum_probs=59.6
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
...++..|||||+| |.++.++|+..+. .+|+++|. ++...+.+++.++.+|+ ++|+++.++..+... ...+
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~--~~~~~~~a~~~l~~~g~--~~v~~~~gd~~~~~~---~~~~ 145 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIER--IPELAEKAKKTLKKLGY--DNVEVIVGDGTLGYE---ENAP 145 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeC--CHHHHHHHHHHHHHcCC--CCeEEEECCcccCCC---cCCC
Confidence 33467899999999 9998877776323 59999999 67666788888888888 479999987553321 2357
Q ss_pred ccEEEccc
Q 044245 480 VDLLIGEP 487 (694)
Q Consensus 480 vDvivsE~ 487 (694)
.|+|++..
T Consensus 146 fD~I~~~~ 153 (212)
T PRK13942 146 YDRIYVTA 153 (212)
T ss_pred cCEEEECC
Confidence 89998764
No 228
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.2e-05 Score=80.64 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=78.4
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
|......++|+.|++.|+| |.|++..|++ |+..+|+++|. .+...+.|+++++.-|+. |+|++..+++.+...
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~--r~d~~k~A~~Nl~~~~l~-d~v~~~~~Dv~~~~~-- 160 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI--REDFAKTARENLSEFGLG-DRVTLKLGDVREGID-- 160 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEe--cHHHHHHHHHHHHHhccc-cceEEEecccccccc--
Confidence 4444555689999999999 9999999985 54689999999 555667889999988997 889998886655443
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
++.+|.|+-.. --||.+|. +....|+|||.+
T Consensus 161 --~~~vDav~LDm-------p~PW~~le------~~~~~Lkpgg~~ 191 (256)
T COG2519 161 --EEDVDAVFLDL-------PDPWNVLE------HVSDALKPGGVV 191 (256)
T ss_pred --ccccCEEEEcC-------CChHHHHH------HHHHHhCCCcEE
Confidence 35899998873 25687662 223358999643
No 229
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.07 E-value=1.3e-05 Score=80.95 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=40.2
Q ss_pred HHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHH
Q 044245 55 AYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKL 115 (694)
Q Consensus 55 ~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~ 115 (694)
.+..++... ..++.+|||+|||||.++..+++.|+ .+|+|+|.++.|+..
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga-----------~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGA-----------KEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCC-----------CEEEEEeCCHHHHHH
Confidence 334555543 24678999999999999999999976 699999999987755
No 230
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.07 E-value=1.8e-05 Score=84.64 Aligned_cols=109 Identities=12% Similarity=0.024 Sum_probs=67.9
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+...+..++++.||||||| |.++..+|+.| +++|+++++ ++.+..-++.+.+..+.. .+|+++.+..+++..
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~--S~~~l~q~~a~~~~~~~~-~~i~~~~~d~e~lp~--- 186 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDP--SQLFLCQFEAVRKLLGND-QRAHLLPLGIEQLPA--- 186 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcC--CHHHHHHHHHHHHhcCCC-CCeEEEeCCHHHCCC---
Confidence 3444545678899999999 99999899986 889999999 554321112222222223 579999987776643
Q ss_pred CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 476 QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 476 ~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+++.|+|+|-..... .. +-.. ..+ .+.+.|+|||.++
T Consensus 187 -~~~FD~V~s~~vl~H----~~-dp~~--~L~-~l~~~LkpGG~lv 223 (322)
T PRK15068 187 -LKAFDTVFSMGVLYH----RR-SPLD--HLK-QLKDQLVPGGELV 223 (322)
T ss_pred -cCCcCEEEECChhhc----cC-CHHH--HHH-HHHHhcCCCcEEE
Confidence 467999998531111 11 1111 111 2234699999776
No 231
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.05 E-value=8.6e-06 Score=79.07 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=60.7
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCC--cccccEEEeecc-cccccccccC
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNC--FSIDRVEILQKG-KKCLTMDDTQ 476 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~--l~~~~i~vi~~~-~~~~~~~~l~ 476 (694)
...++++.||+||+| |+.+|.+|+..++.+|++-+. .+ +.+.++.+++.|+ .. .+|++..=. .+++....+.
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~--~~-~l~~l~~Ni~~N~~~~~-~~v~v~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDY--NE-VLELLRRNIELNGSLLD-GRVSVRPLDWGDELDSDLLE 116 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE---S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEecc--ch-hhHHHHHHHHhcccccc-ccccCcEEEecCcccccccc
Confidence 445678999999999 999999999934889999887 55 5677899999998 54 677775422 1222222234
Q ss_pred CccccEEEc-cccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 477 QKKVDLLIG-EPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 477 ~~~vDvivs-E~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
+.++|+||+ +..|. +...+ -..+.++++|+|++.
T Consensus 117 ~~~~D~IlasDv~Y~--~~~~~-------~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 117 PHSFDVILASDVLYD--EELFE-------PLVRTLKRLLKPNGK 151 (173)
T ss_dssp -SSBSEEEEES--S---GGGHH-------HHHHHHHHHBTT-TT
T ss_pred cccCCEEEEecccch--HHHHH-------HHHHHHHHHhCCCCE
Confidence 568998887 55444 13333 122233457898886
No 232
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.04 E-value=1.6e-05 Score=83.05 Aligned_cols=104 Identities=16% Similarity=0.081 Sum_probs=71.6
Q ss_pred CCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
.++..|||+|+| |++++.+++. |...+|++++. ++.+.+.+++..+.+++ ++++++.+..+++.. +.+.+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~--s~~~l~~A~~~~~~~g~--~~v~~~~~d~~~l~~---~~~~fD 148 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDM--TPEMLAKARANARKAGY--TNVEFRLGEIEALPV---ADNSVD 148 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECC--CHHHHHHHHHHHHHcCC--CCEEEEEcchhhCCC---CCCcee
Confidence 367899999999 9888877775 42348999999 66666778888888888 478999987766543 346799
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
+|++...+. ..+ +.-. ..+. .-+.|||||+++=
T Consensus 149 ~Vi~~~v~~----~~~-d~~~--~l~~-~~r~LkpGG~l~i 181 (272)
T PRK11873 149 VIISNCVIN----LSP-DKER--VFKE-AFRVLKPGGRFAI 181 (272)
T ss_pred EEEEcCccc----CCC-CHHH--HHHH-HHHHcCCCcEEEE
Confidence 999885322 122 1111 1122 2347999998764
No 233
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=2.5e-05 Score=77.55 Aligned_cols=97 Identities=25% Similarity=0.319 Sum_probs=80.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+++|||+|.|.-|+.+|-..+ ..+|+-+|.+..-+...++..+.-|++ |+++++++++++.. +
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p----------~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~--~-- 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP----------DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQ--E-- 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc----------CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhccc--c--
Confidence 58999999999999999886654 567999999999999999999999996 89999999999762 1
Q ss_pred CC-ccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SR-ADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~-~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+ ||+|+|--+.+ +..+......++++||.++
T Consensus 133 ~~~~D~vtsRAva~-------L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 133 KKQYDVVTSRAVAS-------LNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred cccCcEEEeehccc-------hHHHHHHHHHhcccCCcch
Confidence 23 99999865542 6667777778999988765
No 234
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.02 E-value=4.2e-05 Score=80.44 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=60.1
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEc
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
+.|||+||| |.+++.+|+.....+|+++|. ++.+.++++++++.|++. ++|++++++..+ .++.+++|+|||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDi--s~~al~~a~~n~~~~~~~-~~v~~~~~d~~~----~~~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDI--SPDALAVAEENAEKNQLE-HRVEFIQSNLFE----PLAGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEECchhc----cCcCCCccEEEE
Confidence 579999999 999988888743369999999 777788899999999997 789999986432 233347999999
Q ss_pred cc
Q 044245 486 EP 487 (694)
Q Consensus 486 E~ 487 (694)
.|
T Consensus 189 NP 190 (284)
T TIGR00536 189 NP 190 (284)
T ss_pred CC
Confidence 84
No 235
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.01 E-value=2.3e-05 Score=82.49 Aligned_cols=99 Identities=8% Similarity=0.021 Sum_probs=66.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |..++.+|+.| .+|+++|. ++.+.+.+++.++.+++. ++++..+.+.. .+ .+++|+|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~--s~~ai~~~~~~~~~~~l~---v~~~~~D~~~~---~~-~~~fD~I 188 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDI--NQQSLENLQEIAEKENLN---IRTGLYDINSA---SI-QEEYDFI 188 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEEC--CHHHHHHHHHHHHHcCCc---eEEEEechhcc---cc-cCCccEE
Confidence 45689999999 99999999986 58999999 777777788888888873 66665543332 23 4789999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
++...+. .++-+.+.- +. ..+.+.|+|||.+
T Consensus 189 ~~~~vl~----~l~~~~~~~-~l-~~~~~~LkpgG~~ 219 (287)
T PRK12335 189 LSTVVLM----FLNRERIPA-II-KNMQEHTNPGGYN 219 (287)
T ss_pred EEcchhh----hCCHHHHHH-HH-HHHHHhcCCCcEE
Confidence 9986332 122011110 11 1223469999973
No 236
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.00 E-value=3e-05 Score=76.91 Aligned_cols=70 Identities=10% Similarity=0.089 Sum_probs=54.7
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
++.+.....++.+|||+|+| |.+++.+|+.+...+|+++|. ++.+.+.+++.++.+++. +|+++.+++++
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~--s~~~~~~a~~n~~~~~~~--~v~~~~~d~~~ 101 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIER--DEEVVNLIRRNCDRFGVK--NVEVIEGSAPE 101 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHHHHHhCCC--CeEEEECchHH
Confidence 34455544567899999999 999988887643579999999 777777888888889884 69999887654
No 237
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.00 E-value=3.1e-05 Score=81.47 Aligned_cols=106 Identities=21% Similarity=0.163 Sum_probs=83.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec-cccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINK-RSDELEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~-~~~~l~~~ 142 (694)
+.+|..|||=-||||.+.+.|.-.|+ +++|+|++..|++-|+.|.+..+++ ...++.. |++.++++
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~------------~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA------------RVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLR 261 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc------------eEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCC
Confidence 66799999999999999999998886 9999999999999999999999876 5656666 89888753
Q ss_pred cCCCCCccEEEEcccccccc---CC---ChHHHHHHHHHhccCCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELL---GE---GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~---~e---~~l~~l~~~~~~~L~p~G~ii 185 (694)
. .++|.|++++.+--.. .+ ..+..+++.....|++||.++
T Consensus 262 ~---~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~v 307 (347)
T COG1041 262 D---NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIV 307 (347)
T ss_pred C---CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEE
Confidence 2 2599999998553211 12 234456666677999999764
No 238
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.99 E-value=4.3e-05 Score=80.26 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=61.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |.+++.+|+.....+|+++|- ++.+.++|++.++.||+. ++|+++.++..+ .++.++.|+|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDi--s~~al~~A~~n~~~~~~~-~~i~~~~~D~~~----~~~~~~fD~I 193 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDI--SPDALAVAEINIERHGLE-DRVTLIQSDLFA----ALPGRKYDLI 193 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEECchhh----ccCCCCccEE
Confidence 34689999999 999988888643468999999 788888999999999997 899999986422 2334579999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
|+-|
T Consensus 194 v~NP 197 (284)
T TIGR03533 194 VSNP 197 (284)
T ss_pred EECC
Confidence 9984
No 239
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.99 E-value=7.6e-05 Score=79.64 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=87.3
Q ss_pred HHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCc------------------------------cCCCcc
Q 044245 54 RAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTT------------------------------SLNTKG 101 (694)
Q Consensus 54 ~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~------------------------------~~~~~~ 101 (694)
+....||... -.++...+|--||||.+.+.+|..++. .... ...+..
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~n-iAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAAN-IAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccc-cCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 3444454432 234578999999999999999987740 0000 000111
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCC-hH----HHHHHHHHh
Q 044245 102 MVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEG-LI----PTLQHAHDR 176 (694)
Q Consensus 102 ~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~-~l----~~l~~~~~~ 176 (694)
.++|+|+++.+++.|+.|+++.|+.+.|++.+++...+..+ . +.+|+|||||.+-.-+++. .+ +.+...+++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--~-~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP--L-EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--C-CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999998642 1 6899999999876666544 22 334444445
Q ss_pred ccCCCCe
Q 044245 177 LLVENPL 183 (694)
Q Consensus 177 ~L~p~G~ 183 (694)
.++.-+.
T Consensus 333 ~~~~ws~ 339 (381)
T COG0116 333 LLAGWSR 339 (381)
T ss_pred HhcCCce
Confidence 5544333
No 240
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=5.6e-05 Score=75.94 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=82.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|++-|+|+|.+|.+++|+-+ |.++++..|....-++.|++-.+..|+++++++++.|+....+..
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~---------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVA---------PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhC---------cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 67899999999999999999999987 568999999999999999999999999999999999988766533
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCe
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPL 183 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ 183 (694)
...++|.|+.++... -..+-++.. .|+.+|.
T Consensus 174 -ks~~aDaVFLDlPaP-------w~AiPha~~-~lk~~g~ 204 (314)
T KOG2915|consen 174 -KSLKADAVFLDLPAP-------WEAIPHAAK-ILKDEGG 204 (314)
T ss_pred -cccccceEEEcCCCh-------hhhhhhhHH-HhhhcCc
Confidence 246899999875542 223334444 5666553
No 241
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.98 E-value=3.2e-05 Score=75.46 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=58.2
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
..+++.|||+|+| |.+++.+++.| + +|+++|. ++.+.+.+++.++.|+. +++++.++..+. + ..+.|
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~-~v~~vD~--s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~----~-~~~fD 84 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG-K-CILTTDI--NPFAVKELRENAKLNNV---GLDVVMTDLFKG----V-RGKFD 84 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC-C-EEEEEEC--CHHHHHHHHHHHHHcCC---ceEEEEcccccc----c-CCccc
Confidence 3456789999999 99999999986 5 9999999 77777788888888886 378887764332 1 35899
Q ss_pred EEEccccc
Q 044245 482 LLIGEPYY 489 (694)
Q Consensus 482 vivsE~~~ 489 (694)
+|++-|-|
T Consensus 85 ~Vi~n~p~ 92 (179)
T TIGR00537 85 VILFNPPY 92 (179)
T ss_pred EEEECCCC
Confidence 99998533
No 242
>PRK14967 putative methyltransferase; Provisional
Probab=97.97 E-value=4e-05 Score=77.66 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=59.6
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.++..+|+.| +++|+++|- ++.+.+++++.++.|++ +++++.++..+. ++.++.|+|
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~--s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~----~~~~~fD~V 105 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDI--SRRAVRSARLNALLAGV---DVDVRRGDWARA----VEFRPFDVV 105 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEEC--CHHHHHHHHHHHHHhCC---eeEEEECchhhh----ccCCCeeEE
Confidence 56789999999 99999999985 789999999 67666778888888887 378887754432 234689999
Q ss_pred Ecc-cccc
Q 044245 484 IGE-PYYF 490 (694)
Q Consensus 484 vsE-~~~~ 490 (694)
|+. ||..
T Consensus 106 i~npPy~~ 113 (223)
T PRK14967 106 VSNPPYVP 113 (223)
T ss_pred EECCCCCC
Confidence 998 4543
No 243
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.96 E-value=2.3e-05 Score=76.68 Aligned_cols=110 Identities=6% Similarity=-0.021 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
.+..+.++....+...+||+||| |==|++.|+.| -.|+|++. ++.+.+.++++++.++++ |+....+.++..
T Consensus 18 ~hs~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~--s~~al~~l~~~a~~~~l~---i~~~~~Dl~~~~ 90 (192)
T PF03848_consen 18 THSEVLEAVPLLKPGKALDLGCGEGRNALYLASQG--FDVTAVDI--SPVALEKLQRLAEEEGLD---IRTRVADLNDFD 90 (192)
T ss_dssp --HHHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEES--SHHHHHHHHHHHHHTT-T---EEEEE-BGCCBS
T ss_pred CcHHHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEEC--CHHHHHHHHHHHhhcCce---eEEEEecchhcc
Confidence 34445666666677789999999 99999999997 57999999 777766778888888884 777666544333
Q ss_pred ccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
+ +++.|+|+|...+. .|+-+.+. -.-+++...++|||.
T Consensus 91 ---~-~~~yD~I~st~v~~----fL~~~~~~--~i~~~m~~~~~pGG~ 128 (192)
T PF03848_consen 91 ---F-PEEYDFIVSTVVFM----FLQRELRP--QIIENMKAATKPGGY 128 (192)
T ss_dssp -----TTTEEEEEEESSGG----GS-GGGHH--HHHHHHHHTEEEEEE
T ss_pred ---c-cCCcCEEEEEEEec----cCCHHHHH--HHHHHHHhhcCCcEE
Confidence 3 46899999974332 23312211 112233446899995
No 244
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.96 E-value=5e-05 Score=84.71 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=85.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||++||.|.=+..+|.... +.+.|+|+|+++.-++.+++++++.|+. +|.+.+.|...+..
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~---------~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~-- 178 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMN---------NQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGA-- 178 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhh--
Confidence 46789999999999999888888764 2469999999999999999999999996 78999888876531
Q ss_pred CCCCCccEEEEccccc--cccCCC--h---------------HHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDS--ELLGEG--L---------------IPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~e~--~---------------l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
..++.||.|+.+..=+ +.+... . ...++....++|+|||+++=..+|+.
T Consensus 179 ~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 179 ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 2346899999765322 222111 0 01344444568999999875555544
No 245
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.96 E-value=3.9e-05 Score=74.74 Aligned_cols=111 Identities=16% Similarity=0.052 Sum_probs=69.6
Q ss_pred HHHHHHhh-ccC--CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 56 YRLAIDKM-VTK--SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 56 y~~ai~~~-~~~--~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
-.+|++-. +.. ..-+||||||||+-+-.+...|. ..+++|+|+.|++.|.+.- ++ -.++
T Consensus 37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh------------~wiGvDiSpsML~~a~~~e----~e--gdli 98 (270)
T KOG1541|consen 37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH------------QWIGVDISPSMLEQAVERE----LE--GDLI 98 (270)
T ss_pred HHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc------------eEEeecCCHHHHHHHHHhh----hh--cCee
Confidence 34555543 333 57899999999999888887764 8999999999999998621 11 1245
Q ss_pred eccccc-cccccCCCCCccEEEEccccccccC-----CC---hHHHHHHHHHhccCCCCeEEcC
Q 044245 133 NKRSDE-LEVGVDIDSRADILVSEILDSELLG-----EG---LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 133 ~~~~~~-l~~~~~l~~~~DlIvse~~~~~l~~-----e~---~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+|+-+ +++ .++.||-+||=---..+.+ +. -+..+...+...|++|++.+-+
T Consensus 99 l~DMG~Glpf---rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 99 LCDMGEGLPF---RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecCCCCCC---CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 566543 333 3578997766210011222 11 1224455566788888876643
No 246
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.95 E-value=6e-05 Score=78.45 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCC-HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEeccccccccc--
Q 044245 67 SCHVLDIGAGTG-LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-GMGRNIKVINKRSDELEVG-- 142 (694)
Q Consensus 67 ~~~VLDiG~GtG-~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-gl~~~I~vi~~~~~~l~~~-- 142 (694)
..++||||||.. +.++..++... .+++|.|+++..++.|+++++.| ++.++|+++.......-+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~-----------W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG-----------WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGI 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-------------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTS
T ss_pred ceEeecCCccHHHHHHHHhhhhcC-----------CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhh
Confidence 357999999965 66788777654 79999999999999999999999 9999999987654332111
Q ss_pred cCCCCCccEEEEcccccc
Q 044245 143 VDIDSRADILVSEILDSE 160 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~ 160 (694)
....++||+.+|+|..+.
T Consensus 172 ~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 172 IQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp TT--S-EEEEEE-----S
T ss_pred hcccceeeEEecCCcccc
Confidence 112368999999986643
No 247
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=3.6e-05 Score=83.95 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=76.9
Q ss_pred HHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 044245 53 NRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIK 130 (694)
Q Consensus 53 ~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~ 130 (694)
.+.....|... +..++.+||+.||||.+++.+|+.. .+|+++|+++.+++.|+++++.||++ |.+
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~------------~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~ 434 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV------------KRVIGVEISPDAVEDAEKNAQINGIS-NAT 434 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc------------cceeeeecChhhcchhhhcchhcCcc-cee
Confidence 45555556543 5567899999999999999999875 59999999999999999999999998 899
Q ss_pred EEeccccccccccCCCC---Ccc-EEEEccccccccCCChHHHHHHHHHhc
Q 044245 131 VINKRSDELEVGVDIDS---RAD-ILVSEILDSELLGEGLIPTLQHAHDRL 177 (694)
Q Consensus 131 vi~~~~~~l~~~~~l~~---~~D-lIvse~~~~~l~~e~~l~~l~~~~~~~ 177 (694)
++.|..+++-. ..+.. .-+ +.|.++.- .|+-..++.+++++
T Consensus 435 Fi~gqaE~~~~-sl~~~~~~~~~~v~iiDPpR-----~Glh~~~ik~l~~~ 479 (534)
T KOG2187|consen 435 FIVGQAEDLFP-SLLTPCCDSETLVAIIDPPR-----KGLHMKVIKALRAY 479 (534)
T ss_pred eeecchhhccc-hhcccCCCCCceEEEECCCc-----ccccHHHHHHHHhc
Confidence 99997777532 11111 234 55555543 23344555565544
No 248
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.94 E-value=2.7e-05 Score=79.88 Aligned_cols=122 Identities=15% Similarity=0.162 Sum_probs=85.3
Q ss_pred HHHHHHHh----hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC---CC
Q 044245 55 AYRLAIDK----MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM---GR 127 (694)
Q Consensus 55 ~y~~ai~~----~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl---~~ 127 (694)
.|.+++.. ...+.++||-||-|.|..+..+.+... ..+|++||+++.+++.|++....... ..
T Consensus 61 ~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~----------~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~ 130 (246)
T PF01564_consen 61 IYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPP----------VESITVVEIDPEVVELARKYFPEFSEGLDDP 130 (246)
T ss_dssp HHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-----------SEEEEEES-HHHHHHHHHHTHHHHTTGGST
T ss_pred HHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCC----------cceEEEEecChHHHHHHHHhchhhccccCCC
Confidence 35555543 123578999999999999888887653 36899999999999999998765322 35
Q ss_pred cEEEEeccccccccccCCCC-CccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcCc
Q 044245 128 NIKVINKRSDELEVGVDIDS-RADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 128 ~I~vi~~~~~~l~~~~~l~~-~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
|++++.+|...+-. ...+ +||+|+.+..+....... .-..+.+..++.|+|||+++-+.
T Consensus 131 r~~i~~~Dg~~~l~--~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 131 RVRIIIGDGRKFLK--ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp TEEEEESTHHHHHH--TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEhhhHHHHH--hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99999999877542 2235 899999987663222222 23456677778999999988665
No 249
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.93 E-value=5.3e-05 Score=80.39 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=60.4
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEc
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
+.|||+||| |.+++.+|+.....+|+++|- ++.+.++|++.++.||+. ++|++++++..+ .++.++.|+||+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDi--s~~al~~A~~n~~~~~l~-~~i~~~~~D~~~----~l~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDI--SPDALAVAEINIERHGLE-DRVTLIESDLFA----ALPGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHHHHHhCCC-CcEEEEECchhh----hCCCCCccEEEE
Confidence 579999999 999888887643578999999 788888999999999997 899999986432 233457999999
Q ss_pred cc
Q 044245 486 EP 487 (694)
Q Consensus 486 E~ 487 (694)
-|
T Consensus 208 NP 209 (307)
T PRK11805 208 NP 209 (307)
T ss_pred CC
Confidence 84
No 250
>PLN02244 tocopherol O-methyltransferase
Probab=97.92 E-value=7e-05 Score=80.81 Aligned_cols=102 Identities=16% Similarity=0.005 Sum_probs=70.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.||||||| |.++..+|+.. ..+|++++. ++.+.+.+++.++.+|+. ++|+++.++.+++.. +.+..|+|
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~--s~~~i~~a~~~~~~~g~~-~~v~~~~~D~~~~~~---~~~~FD~V 190 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITL--SPVQAARANALAAAQGLS-DKVSFQVADALNQPF---EDGQFDLV 190 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEEC--CHHHHHHHHHHHHhcCCC-CceEEEEcCcccCCC---CCCCccEE
Confidence 56789999999 88888777753 258999999 676667778888889987 889999987766543 34689999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-.... -+-+ .-. +.+ .+.+.|||||.++
T Consensus 191 ~s~~~~~---h~~d--~~~--~l~-e~~rvLkpGG~lv 220 (340)
T PLN02244 191 WSMESGE---HMPD--KRK--FVQ-ELARVAAPGGRII 220 (340)
T ss_pred EECCchh---ccCC--HHH--HHH-HHHHHcCCCcEEE
Confidence 9832111 1111 111 112 2234799999654
No 251
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.91 E-value=6.4e-05 Score=75.73 Aligned_cols=106 Identities=19% Similarity=0.098 Sum_probs=80.6
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC-
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID- 146 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~- 146 (694)
..+||||||.|...+..|+..+ ...++|||+....+..|.+.+.+.++. |+.+++.|+.++..- -.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP----------~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~-~~~~ 117 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP----------EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDY-LIPD 117 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC----------CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHh-cCCC
Confidence 5899999999999999999876 578999999999999999999999997 899999998876521 122
Q ss_pred CCccEEEEccccccccCC-----ChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGE-----GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e-----~~l~~l~~~~~~~L~p~G~ii 185 (694)
+..|-|..+..+-..-.. -..+.++....+.|+|||.+.
T Consensus 118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 367766654332211111 134567788888999999875
No 252
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.89 E-value=4.5e-05 Score=77.76 Aligned_cols=113 Identities=7% Similarity=0.001 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-ch--HHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VF--LTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-gi--Lsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
|-..+.+.. +.+.||++|+| |. |+|.++. +++.+|+++|. ++.+.++|++.++.||++ ++|+++.+...+
T Consensus 59 ~L~~l~~~~---~~~~vLEiGt~~G~s~l~la~~~-~~~g~v~tiD~--d~~~~~~A~~n~~~~gl~-~~i~~~~gda~~ 131 (234)
T PLN02781 59 FLSMLVKIM---NAKNTLEIGVFTGYSLLTTALAL-PEDGRITAIDI--DKEAYEVGLEFIKKAGVD-HKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHh---CCCEEEEecCcccHHHHHHHHhC-CCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEEccHHH
Confidence 444444444 46789999998 65 4444443 33679999999 777778899999999998 999999998765
Q ss_pred cccccc----CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcce
Q 044245 470 LTMDDT----QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 470 ~~~~~l----~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~ 524 (694)
.- ..+ +.++.|+|+...--.. .. . |.... .++|+|||.++=+-
T Consensus 132 ~L-~~l~~~~~~~~fD~VfiDa~k~~---y~-----~--~~~~~-~~ll~~GG~ii~dn 178 (234)
T PLN02781 132 AL-DQLLNNDPKPEFDFAFVDADKPN---YV-----H--FHEQL-LKLVKVGGIIAFDN 178 (234)
T ss_pred HH-HHHHhCCCCCCCCEEEECCCHHH---HH-----H--HHHHH-HHhcCCCeEEEEEc
Confidence 41 111 1357899987631000 00 0 22221 24699999877443
No 253
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00011 Score=71.14 Aligned_cols=87 Identities=21% Similarity=0.285 Sum_probs=65.5
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--------C-CC
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--------M-GR 127 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--------l-~~ 127 (694)
.+++...+.+|...||+|+|||.|+.++++..++. ...++|||.-++.++++++++...- + ..
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~--------g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGAT--------GGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCC--------CccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 44555568899999999999999999999765422 2345999999999999999987543 1 13
Q ss_pred cEEEEeccccccccccCCCCCccEEEE
Q 044245 128 NIKVINKRSDELEVGVDIDSRADILVS 154 (694)
Q Consensus 128 ~I~vi~~~~~~l~~~~~l~~~~DlIvs 154 (694)
+..++.+|.+..... ..+||.|.+
T Consensus 145 ~l~ivvGDgr~g~~e---~a~YDaIhv 168 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAE---QAPYDAIHV 168 (237)
T ss_pred ceEEEeCCccccCCc---cCCcceEEE
Confidence 677788887765432 268999976
No 254
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.88 E-value=0.00013 Score=75.69 Aligned_cols=89 Identities=7% Similarity=-0.049 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhc--cCCcccccEEEeeccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVAD--PNCFSIDRVEILQKGK 467 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~--~N~l~~~~i~vi~~~~ 467 (694)
.+++.+.+.....++..|||+||| |.++...++. |...+|+++|. ++.+.+.|++-.. .++.. ++|+++.+..
T Consensus 60 ~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~--S~~ml~~A~~r~~~~~~~~~-~~i~~~~~d~ 136 (261)
T PLN02233 60 IWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDF--SSEQLAVAASRQELKAKSCY-KNIEWIEGDA 136 (261)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHhhhhhhccC-CCeEEEEccc
Confidence 345544444444567799999999 8888777764 42359999999 6655555543322 22233 5799999987
Q ss_pred ccccccccCCccccEEEcc
Q 044245 468 KCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE 486 (694)
+++.. +.+.+|+|++-
T Consensus 137 ~~lp~---~~~sfD~V~~~ 152 (261)
T PLN02233 137 TDLPF---DDCYFDAITMG 152 (261)
T ss_pred ccCCC---CCCCEeEEEEe
Confidence 76653 34679999874
No 255
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.87 E-value=7.1e-05 Score=74.38 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=63.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH-------HcCC-CCcEEEEecc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH-------VNGM-GRNIKVINKR 135 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~-------~ngl-~~~I~vi~~~ 135 (694)
+.++.+.+|||||.|...+.+|-... ..+.+|||+.+...+.|+...+ ..|. ..+++++++|
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~----------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTG----------CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH------------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcC----------CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 66789999999999988777775543 3579999999999888876543 2333 3478899988
Q ss_pred ccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 136 SDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 136 ~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..+.+.....-...|+|+++ +..+.+.....+...+. -|++|.++|
T Consensus 110 fl~~~~~~~~~s~AdvVf~N---n~~F~~~l~~~L~~~~~-~lk~G~~II 155 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVN---NTCFDPDLNLALAELLL-ELKPGARII 155 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE-----TTT-HHHHHHHHHHHT-TS-TT-EEE
T ss_pred ccccHhHhhhhcCCCEEEEe---ccccCHHHHHHHHHHHh-cCCCCCEEE
Confidence 76643211111468999986 44444455555554443 578888876
No 256
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.86 E-value=5.4e-05 Score=78.76 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=91.2
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--CC-CCcEEEEeccccccccccC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--GM-GRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--gl-~~~I~vi~~~~~~l~~~~~ 144 (694)
++||-||-|.|..+..+.+... ..+++.||+++..++.|++....- +. ..|++++.+|..++-. +
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~----------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~--~ 145 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP----------VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR--D 145 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC----------cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH--h
Confidence 6999999999999999999874 469999999999999999987532 22 3699999999877642 2
Q ss_pred CCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcCceEEEEEE
Q 044245 145 IDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPCRVTTYGQL 195 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ 195 (694)
.+++||+|+.+..+.....+.. -..+.+..++.|+++|+++-+....+...
T Consensus 146 ~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 146 CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 3358999999876653222333 24577788889999999999877777776
No 257
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.85 E-value=4.3e-05 Score=78.47 Aligned_cols=113 Identities=14% Similarity=0.012 Sum_probs=74.3
Q ss_pred hhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-CC----CCcEEEEeccc
Q 044245 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-GM----GRNIKVINKRS 136 (694)
Q Consensus 62 ~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-gl----~~~I~vi~~~~ 136 (694)
....++..|+|+|||-|.-.+---++|. ++++++|+....++.|+++.+.. +. .-.+.++.+|.
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI-----------~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWDKAGI-----------GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred HHhccccccceeccCCcccHhHhhhhcc-----------cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 3445688999999998866666667776 78999999999999998877532 11 12478898887
Q ss_pred cccccccCC---CCCccEEEEcccccccc-CCChHHHHHHHHHhccCCCCeEE
Q 044245 137 DELEVGVDI---DSRADILVSEILDSELL-GEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 137 ~~l~~~~~l---~~~~DlIvse~~~~~l~-~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..-.+...+ ..+||+|-|..--++.+ .|.....++.-..+.|+|||.+|
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 654332222 23599998743222111 12233344444456999999986
No 258
>PRK04148 hypothetical protein; Provisional
Probab=97.84 E-value=0.00013 Score=66.91 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCCCH-HHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 66 KSCHVLDIGAGTGL-LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~-lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
++.+|||||||+|. ++..+++.|. .|+|+|+|+.+++.|+++ .+.++.+|..+-.. .
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~------------~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~--~ 73 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF------------DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL--E 73 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC------------EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH--H
Confidence 35789999999996 8999988874 999999999988877653 25678888876543 2
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHH
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHD 175 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~ 175 (694)
+-+.+|+|.+- -....+.+.+++..+
T Consensus 74 ~y~~a~liysi-----rpp~el~~~~~~la~ 99 (134)
T PRK04148 74 IYKNAKLIYSI-----RPPRDLQPFILELAK 99 (134)
T ss_pred HHhcCCEEEEe-----CCCHHHHHHHHHHHH
Confidence 33679999861 223344555555444
No 259
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00011 Score=72.37 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=73.1
Q ss_pred HHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC
Q 044245 398 RNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ 476 (694)
Q Consensus 398 ~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~ 476 (694)
.+.+...++..||+||+| |..+-..|+.+ .+|+++|. .+..++.|++..+..|+. +|+|++++-. ..--+
T Consensus 65 ~~~L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr--~~~L~~~A~~~L~~lg~~--nV~v~~gDG~---~G~~~ 135 (209)
T COG2518 65 LQLLELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIER--IEELAEQARRNLETLGYE--NVTVRHGDGS---KGWPE 135 (209)
T ss_pred HHHhCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEE--cHHHHHHHHHHHHHcCCC--ceEEEECCcc---cCCCC
Confidence 344555678899999999 99999999984 59999999 666566788899999995 4999988532 11111
Q ss_pred CccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE-Ecce
Q 044245 477 QKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII-MPFK 524 (694)
Q Consensus 477 ~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i-~P~~ 524 (694)
....|.|+..--. ..+| ..| .. .|+|||+| +|-.
T Consensus 136 ~aPyD~I~Vtaaa----~~vP-~~L---l~------QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAA----PEVP-EAL---LD------QLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeecc----CCCC-HHH---HH------hcccCCEEEEEEc
Confidence 2568999887421 2355 323 22 48999954 4544
No 260
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.84 E-value=0.00013 Score=74.71 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
+..+|+|||+|+|.++..++++.+ ..+++.+|. |..++.+++ .+||+++.+|..+ .+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P----------~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~-----~~ 156 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYP----------NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFD-----PL 156 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHST----------TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTT-----CC
T ss_pred CccEEEeccCcchHHHHHHHHHCC----------CCcceeecc-Hhhhhcccc-------ccccccccccHHh-----hh
Confidence 347899999999999999999986 579999998 888888877 5799999999873 34
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCC--CeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN--PLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~--G~iiP 186 (694)
|. +|+++.--+-+.. .+.....++..+.+.|+|| |+++-
T Consensus 157 P~-~D~~~l~~vLh~~-~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 157 PV-ADVYLLRHVLHDW-SDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp SS-ESEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred cc-ccceeeehhhhhc-chHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 56 9998763222111 1223334566666789988 88763
No 261
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.84 E-value=5.2e-05 Score=79.30 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=63.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+++|.+||.|..+..++++.+ +.++|+|+|.++.|++.|++.++. .+++++++++..++..
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~---------~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~-- 82 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLG---------PKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKE-- 82 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCC---------CCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHH--
Confidence 35678999999999999999999864 247999999999999999987754 4689999999888642
Q ss_pred CCC---CCccEEEEc
Q 044245 144 DID---SRADILVSE 155 (694)
Q Consensus 144 ~l~---~~~DlIvse 155 (694)
.++ .++|.|+.+
T Consensus 83 ~l~~~~~~vDgIl~D 97 (296)
T PRK00050 83 VLAEGLGKVDGILLD 97 (296)
T ss_pred HHHcCCCccCEEEEC
Confidence 111 268998875
No 262
>PRK04266 fibrillarin; Provisional
Probab=97.83 E-value=8.8e-05 Score=75.07 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=62.2
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-cccCCc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-DDTQQK 478 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-~~l~~~ 478 (694)
....++..|||+||| |.+++.+|+..+..+||++|. ++.+.+.+.+.++. . .+|+++.++.++... ..+ .+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~--~~~ml~~l~~~a~~--~--~nv~~i~~D~~~~~~~~~l-~~ 140 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEF--APRPMRELLEVAEE--R--KNIIPILADARKPERYAHV-VE 140 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEEC--CHHHHHHHHHHhhh--c--CCcEEEECCCCCcchhhhc-cc
Confidence 344577899999999 888888887632468999999 55433333333332 2 357778776553210 123 35
Q ss_pred cccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++|+|+++. -.+|..- .+-....+.|||||.++
T Consensus 141 ~~D~i~~d~-------~~p~~~~---~~L~~~~r~LKpGG~lv 173 (226)
T PRK04266 141 KVDVIYQDV-------AQPNQAE---IAIDNAEFFLKDGGYLL 173 (226)
T ss_pred cCCEEEECC-------CChhHHH---HHHHHHHHhcCCCcEEE
Confidence 699999874 1344321 11112234699999643
No 263
>PRK04457 spermidine synthase; Provisional
Probab=97.82 E-value=0.00011 Score=76.15 Aligned_cols=120 Identities=11% Similarity=0.036 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCC-CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 392 SMVMAMRNALQGR-VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 392 ~y~~Ai~~~~~~~-~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
.|.+++....... ..+.||+||+| |.++.++++.-...+|+++|- .+...+++++....++.. ++++++.++..+
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEi--dp~vi~~A~~~f~~~~~~-~rv~v~~~Da~~ 128 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEI--NPQVIAVARNHFELPENG-ERFEVIEADGAE 128 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHHHcCCCCCC-CceEEEECCHHH
Confidence 3566554433211 34689999999 888887766533578999999 676667778777666655 789999887654
Q ss_pred ccccccCCccccEEEccccccCCccccCcch-hhHHHHHhhcccccCCCceEE
Q 044245 470 LTMDDTQQKKVDLLIGEPYYFGNDGMLPWQN-LRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~-l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.-. .. +++.|+|+...|... ++.++-. ..|+-. ..+.|+|||+++
T Consensus 129 ~l~-~~-~~~yD~I~~D~~~~~--~~~~~l~t~efl~~---~~~~L~pgGvlv 174 (262)
T PRK04457 129 YIA-VH-RHSTDVILVDGFDGE--GIIDALCTQPFFDD---CRNALSSDGIFV 174 (262)
T ss_pred HHH-hC-CCCCCEEEEeCCCCC--CCccccCcHHHHHH---HHHhcCCCcEEE
Confidence 322 22 367999998865332 3322100 122221 123599999764
No 264
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.82 E-value=0.00011 Score=74.95 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-c
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-D 473 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-~ 473 (694)
|.......+|++|++.|+| |-|++..|++ |...+||+.|- .+.-.+.|++.++.+|+. ++|++.++++.+-.. .
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~--~~~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF--REDRAEKARKNFERHGLD-DNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES--SHHHHHHHHHHHHHTTCC-TTEEEEES-GGCG--ST
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc--CHHHHHHHHHHHHHcCCC-CCceeEecceecccccc
Confidence 5555566789999999999 9999999986 33569999999 555567889999999998 899999998743222 1
Q ss_pred ccCCccccEEEccccccCCccccCcchhhHHHHHhhccccc-CCCceE
Q 044245 474 DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVL-SKEVII 520 (694)
Q Consensus 474 ~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L-~p~g~i 520 (694)
++ ...+|.|+-.. --||.+|. .+.. .| +|||++
T Consensus 109 ~~-~~~~DavfLDl-------p~Pw~~i~--~~~~----~L~~~gG~i 142 (247)
T PF08704_consen 109 EL-ESDFDAVFLDL-------PDPWEAIP--HAKR----ALKKPGGRI 142 (247)
T ss_dssp T--TTSEEEEEEES-------SSGGGGHH--HHHH----HE-EEEEEE
T ss_pred cc-cCcccEEEEeC-------CCHHHHHH--HHHH----HHhcCCceE
Confidence 22 36789998863 25688774 2322 37 788854
No 265
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.81 E-value=0.00012 Score=83.04 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=59.2
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
+..|||+||| |.+++.+|+.-...+|+++|- ++.+.++|+++++.|++. ++|++++++.-+ .++.+++|+||
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDi--s~~al~~A~~N~~~~~l~-~~v~~~~~D~~~----~~~~~~fDlIv 211 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDI--SLDAIEVAKSNAIKYEVT-DRIQIIHSNWFE----NIEKQKFDFIV 211 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHHHHHcCCc-cceeeeecchhh----hCcCCCccEEE
Confidence 4579999999 988887665422569999999 788888999999999997 899999886421 22346899999
Q ss_pred ccc
Q 044245 485 GEP 487 (694)
Q Consensus 485 sE~ 487 (694)
|.|
T Consensus 212 sNP 214 (506)
T PRK01544 212 SNP 214 (506)
T ss_pred ECC
Confidence 984
No 266
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.81 E-value=3.5e-05 Score=76.27 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=75.8
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-cCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG-VDIDS 147 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~-~~l~~ 147 (694)
++|+||||.|.....+.+-.+ ++.-+|+|||.|+.+++..+++...+. .++.....|...-... .--++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~--------n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~ 143 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSP--------NNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEG 143 (264)
T ss_pred hheeeccCCCcccchhhhcCC--------CCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcC
Confidence 799999999998888887654 223789999999999999988776543 2444333333322110 11236
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEE
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYG 193 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~ 193 (694)
.+|+|+.=..-+ .++.+-.+..+..+.++|+|||.++-+-.-.|.
T Consensus 144 svD~it~IFvLS-Ai~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 144 SVDIITLIFVLS-AIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred ccceEEEEEEEe-ccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 789887621111 234445556677778899999999877666553
No 267
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.78 E-value=6.5e-05 Score=70.19 Aligned_cols=59 Identities=25% Similarity=0.391 Sum_probs=51.9
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE 138 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~ 138 (694)
++||||||.|..++.+++.++ ..+|+++|.++.+.+.++++++.|+++ ++++++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~----------~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA----------EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC----------CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999999999999875 358999999999999999999999986 68888866554
No 268
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.77 E-value=0.00013 Score=75.40 Aligned_cols=130 Identities=12% Similarity=0.017 Sum_probs=78.0
Q ss_pred CChhHHHHHHHH-HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhH-HHHHHHHhccCCcccccEE
Q 044245 385 GDGEWRLSMVMA-MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKG-AQYLRTVADPNCFSIDRVE 461 (694)
Q Consensus 385 ~D~~r~~~y~~A-i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~-~~~~~~i~~~N~l~~~~i~ 461 (694)
-|+++...+.-. +...+..++|++||||||| |.-++-+++.| |+.|+++|++..-.+ .+++++++. .+ .++.
T Consensus 94 IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg---~~-~~~~ 168 (315)
T PF08003_consen 94 IDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLG---QD-PPVF 168 (315)
T ss_pred ecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhC---CC-ccEE
Confidence 355554433332 5555556789999999999 99999999996 999999999522121 123344442 22 3456
Q ss_pred EeecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE------cceEEEEEEE
Q 044245 462 ILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM------PFKGILKACA 531 (694)
Q Consensus 462 vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~------P~~a~l~~~~ 531 (694)
.+.-.+|++.. .++.|+|+|=+..+. -.-|-..|. ..++ .|+|||.++ +......++|
T Consensus 169 ~lplgvE~Lp~----~~~FDtVF~MGVLYH--rr~Pl~~L~--~Lk~----~L~~gGeLvLETlvi~g~~~~~L~P 232 (315)
T PF08003_consen 169 ELPLGVEDLPN----LGAFDTVFSMGVLYH--RRSPLDHLK--QLKD----SLRPGGELVLETLVIDGDENTVLVP 232 (315)
T ss_pred EcCcchhhccc----cCCcCEEEEeeehhc--cCCHHHHHH--HHHH----hhCCCCEEEEEEeeecCCCceEEcc
Confidence 66545555543 367999998752221 112211221 3333 489999665 5555544444
No 269
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.76 E-value=0.00011 Score=81.90 Aligned_cols=91 Identities=19% Similarity=0.079 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.+.+.....++..|||+||| |.+++.+|+. +++|+++|. ++.+.+.|++.++.||+ ++|+++.++.++.-.
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~--~~~av~~a~~n~~~~~~--~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEV--VPESVEKAQQNAELNGI--ANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEc--CHHHHHHHHHHHHHhCC--CceEEEeCCHHHHHH
Confidence 3334444443456789999999 9999999986 579999999 77777888999999998 479999998765421
Q ss_pred c-ccCCccccEEEcccccc
Q 044245 473 D-DTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 473 ~-~l~~~~vDvivsE~~~~ 490 (694)
. .....+.|+||..|-..
T Consensus 355 ~~~~~~~~~D~vi~dPPr~ 373 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRK 373 (431)
T ss_pred HHHhcCCCCCEEEECcCCC
Confidence 1 01134689999987433
No 270
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.76 E-value=0.00015 Score=78.00 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=54.6
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEc
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
..|||+||| |.++..+++.+...+|+++|. ++.+.+.+++.++.|++. . +++.++..+ .+ .++.|+|||
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDi--s~~Al~~A~~nl~~n~l~-~--~~~~~D~~~----~~-~~~fDlIvs 267 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDV--SAAALESSRATLAANGLE-G--EVFASNVFS----DI-KGRFDMIIS 267 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-C--EEEEccccc----cc-CCCccEEEE
Confidence 369999999 999999888753468999999 777778889999999985 3 455543221 22 468999999
Q ss_pred cc
Q 044245 486 EP 487 (694)
Q Consensus 486 E~ 487 (694)
-|
T Consensus 268 NP 269 (342)
T PRK09489 268 NP 269 (342)
T ss_pred CC
Confidence 85
No 271
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.76 E-value=0.00018 Score=78.39 Aligned_cols=89 Identities=18% Similarity=0.046 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
|+...+++.+... ++..|||+||| |.+++..|+.....+|+++|. ++.+.+.++++++.|+. +|++++++..
T Consensus 238 TE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDi--S~~ALe~AreNa~~~g~---rV~fi~gDl~ 310 (423)
T PRK14966 238 TEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDI--SPPALETARKNAADLGA---RVEFAHGSWF 310 (423)
T ss_pred HHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCC---cEEEEEcchh
Confidence 4445555544432 45689999999 999887776533679999999 78888889998888764 6899998653
Q ss_pred cccccccCCccccEEEccc
Q 044245 469 CLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~ 487 (694)
+.... ...++|+|||-|
T Consensus 311 e~~l~--~~~~FDLIVSNP 327 (423)
T PRK14966 311 DTDMP--SEGKWDIIVSNP 327 (423)
T ss_pred ccccc--cCCCccEEEECC
Confidence 32111 135799999985
No 272
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.73 E-value=7.1e-05 Score=76.15 Aligned_cols=113 Identities=13% Similarity=-0.003 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
+++.+.+.....++..|||++|| |-++...++. |...+|++++. ++-+.+.+++-++..+. .+|++++++.+++
T Consensus 35 wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~--s~~ML~~a~~k~~~~~~--~~i~~v~~da~~l 110 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDI--SPGMLEVARKKLKREGL--QNIEFVQGDAEDL 110 (233)
T ss_dssp --SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES---HHHHHHHHHHHHHTT----SEEEEE-BTTB-
T ss_pred HHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecC--CHHHHHHHHHHHHhhCC--CCeeEEEcCHHHh
Confidence 34444444445577899999999 9998877775 43359999999 66666677777777777 4899999998888
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
..+ .+.+|+|.+=- .. -.+-+.. . ..++ ..|.|||||++
T Consensus 111 p~~---d~sfD~v~~~f--gl-rn~~d~~--~--~l~E-~~RVLkPGG~l 149 (233)
T PF01209_consen 111 PFP---DNSFDAVTCSF--GL-RNFPDRE--R--ALRE-MYRVLKPGGRL 149 (233)
T ss_dssp -S----TT-EEEEEEES---G-GG-SSHH--H--HHHH-HHHHEEEEEEE
T ss_pred cCC---CCceeEEEHHh--hH-HhhCCHH--H--HHHH-HHHHcCCCeEE
Confidence 653 47899998642 11 1122211 0 1122 23479999976
No 273
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.73 E-value=7.9e-05 Score=78.95 Aligned_cols=82 Identities=6% Similarity=0.022 Sum_probs=62.3
Q ss_pred CCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC-CcccccEEEee-ccccccccccc-CCccc
Q 044245 406 QPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN-CFSIDRVEILQ-KGKKCLTMDDT-QQKKV 480 (694)
Q Consensus 406 ~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N-~l~~~~i~vi~-~~~~~~~~~~l-~~~~v 480 (694)
+..|||||+| | |.+|++++.. ..+|+|+|- ++.|.+.|+++++.| +++ ++|+++. ....++-...+ +.++.
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDI--d~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDI--DPQALASAQAIISANPGLN-GAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCC-CCEEEEEeC--CHHHHHHHHHHHHhccCCc-CcEEEEEccchhhhhhcccccCCce
Confidence 4689999999 5 7788888875 368999999 888889999999999 898 8999964 32223322111 24689
Q ss_pred cEEEcc-ccccC
Q 044245 481 DLLIGE-PYYFG 491 (694)
Q Consensus 481 DvivsE-~~~~~ 491 (694)
|+|||- |||..
T Consensus 191 DlivcNPPf~~s 202 (321)
T PRK11727 191 DATLCNPPFHAS 202 (321)
T ss_pred EEEEeCCCCcCc
Confidence 999999 68775
No 274
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.72 E-value=0.00011 Score=74.26 Aligned_cols=100 Identities=12% Similarity=-0.013 Sum_probs=67.4
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEc
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
+.||||||| |.++..+|+..+..+|++++. ++.+.+.+++.++.+|++ ++|+++.++.++.. + +++.|+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~--s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~---~-~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTI--SPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDP---F-PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHhcCCC-cceEEEecccccCC---C-CCCCCEeeh
Confidence 368999999 877766666533468999998 676667788888888998 89999987654331 2 357999998
Q ss_pred cccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 486 EPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 486 E~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
--.+. .+-.|..+ . .++.++|+|||.++
T Consensus 74 ~~~l~---~~~~~~~~----l-~~~~~~LkpgG~l~ 101 (224)
T smart00828 74 FEVIH---HIKDKMDL----F-SNISRHLKDGGHLV 101 (224)
T ss_pred HHHHH---hCCCHHHH----H-HHHHHHcCCCCEEE
Confidence 53221 11222211 1 22334799999877
No 275
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.71 E-value=0.00027 Score=71.91 Aligned_cols=78 Identities=18% Similarity=0.057 Sum_probs=58.8
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..++..|||+||| |.++..+++.++ ..+|+++|. ++.+.+.+++.+..+++. ++++++.+..+++.. +...+
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~--s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~---~~~~~ 122 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDF--SEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPF---PDNSF 122 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHHhhcccccc-cCeEEEecccccCCC---CCCCc
Confidence 3456789999999 988888888753 379999999 666656777777777776 689999887665432 24679
Q ss_pred cEEEcc
Q 044245 481 DLLIGE 486 (694)
Q Consensus 481 DvivsE 486 (694)
|+|++-
T Consensus 123 D~I~~~ 128 (239)
T PRK00216 123 DAVTIA 128 (239)
T ss_pred cEEEEe
Confidence 999863
No 276
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.71 E-value=0.00025 Score=71.13 Aligned_cols=78 Identities=9% Similarity=-0.063 Sum_probs=57.8
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
....++..|||+|+| |.++.+.|+.+ .+|+++|. ++.+.+.+++.++.+++. +|+++.+...+.- ...++
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~--~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~---~~~~~ 144 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVER--IKTLQWEAKRRLKQLGLH--NVSVRHGDGWKGW---PAYAP 144 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeC--CHHHHHHHHHHHHHCCCC--ceEEEECCcccCC---CcCCC
Confidence 334467789999999 99888888874 48999999 566666778888888885 5999988653211 11257
Q ss_pred ccEEEccc
Q 044245 480 VDLLIGEP 487 (694)
Q Consensus 480 vDvivsE~ 487 (694)
.|+|++..
T Consensus 145 fD~I~~~~ 152 (212)
T PRK00312 145 FDRILVTA 152 (212)
T ss_pred cCEEEEcc
Confidence 99998864
No 277
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.70 E-value=0.00023 Score=70.70 Aligned_cols=104 Identities=20% Similarity=0.143 Sum_probs=69.1
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc-cccccCCCCC
Q 044245 70 VLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE-LEVGVDIDSR 148 (694)
Q Consensus 70 VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~-l~~~~~l~~~ 148 (694)
|.||||--|.|++.+.+.|. ..+|+|+|+++.-++.|+++++.+|+.++|++..+|-.+ +.. .+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~----------~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~----~e~ 66 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK----------APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP----GED 66 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS----------EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G----GG-
T ss_pred CceeccchhHHHHHHHhcCC----------CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC----CCC
Confidence 68999999999999999986 468999999999999999999999999999999999544 321 123
Q ss_pred ccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 149 ADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 149 ~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
+|.||-.-||..+ +..++......+ +....+-.||....
T Consensus 67 ~d~ivIAGMGG~l-----I~~ILe~~~~~~-------~~~~~lILqP~~~~ 105 (205)
T PF04816_consen 67 VDTIVIAGMGGEL-----IIEILEAGPEKL-------SSAKRLILQPNTHA 105 (205)
T ss_dssp --EEEEEEE-HHH-----HHHHHHHTGGGG-------TT--EEEEEESS-H
T ss_pred CCEEEEecCCHHH-----HHHHHHhhHHHh-------ccCCeEEEeCCCCh
Confidence 8888876666322 333333322222 33445666777654
No 278
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.70 E-value=0.00016 Score=78.96 Aligned_cols=108 Identities=6% Similarity=-0.083 Sum_probs=77.7
Q ss_pred cccChhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc
Q 044245 374 LALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP 452 (694)
Q Consensus 374 ~~~~r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~ 452 (694)
+.+++...-+.|+..+..-|..+... ....+++.|||++|| |.+++.+|..| ++|+++|. ++.|.+.++++++.
T Consensus 203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~-l~~~~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~--~~~av~~a~~N~~~ 277 (374)
T TIGR02085 203 LVIRPQSFFQTNPKVAAQLYATARQW-VREIPVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEI--ESEAIACAQQSAQM 277 (374)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHH-HHhcCCCEEEEccCCccHHHHHHhhcC--CeEEEEEC--CHHHHHHHHHHHHH
Confidence 34444455566666665555544432 222356789999999 99999999763 68999999 78888889999999
Q ss_pred CCcccccEEEeecccccccccccCCccccEEEcccccc
Q 044245 453 NCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 453 N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~ 490 (694)
|+++ +++++.+++++.... . .++.|+||..|=+.
T Consensus 278 ~~~~--~~~~~~~d~~~~~~~-~-~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 278 LGLD--NLSFAALDSAKFATA-Q-MSAPELVLVNPPRR 311 (374)
T ss_pred cCCC--cEEEEECCHHHHHHh-c-CCCCCEEEECCCCC
Confidence 9984 799999987665321 1 24589999996444
No 279
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.70 E-value=0.00018 Score=72.67 Aligned_cols=104 Identities=26% Similarity=0.282 Sum_probs=71.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..++||||+|.|-.+..++.... +|+|.|.|+.|....++ .|+ +++..+. +. +.+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~------------~v~aTE~S~~Mr~rL~~----kg~----~vl~~~~--w~---~~~ 149 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK------------EVYATEASPPMRWRLSK----KGF----TVLDIDD--WQ---QTD 149 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc------------eEEeecCCHHHHHHHHh----CCC----eEEehhh--hh---ccC
Confidence 46899999999999999988874 89999999999655543 455 3332221 21 123
Q ss_pred CCccEEEE-ccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 147 SRADILVS-EILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 147 ~~~DlIvs-e~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
.+||+|.| |+++ .-...-.++..+++.|+|+|+++-..+--|-.-||..
T Consensus 150 ~~fDvIscLNvLD----Rc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~ 199 (265)
T PF05219_consen 150 FKFDVISCLNVLD----RCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFG 199 (265)
T ss_pred CceEEEeehhhhh----ccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcC
Confidence 58999987 3333 2223446777777799999998876665555556654
No 280
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.70 E-value=6.6e-05 Score=75.39 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=61.7
Q ss_pred ccChhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC
Q 044245 375 ALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN 453 (694)
Q Consensus 375 ~~~r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N 453 (694)
.+.+.|+..+.|..|++.=. -..-...+.|+.|||+||| ||||--.||.| +.|.++++ ++.+.+.|++=.+.+
T Consensus 61 ~mn~~Rl~fi~d~~~~~v~~--~~p~~k~~~g~~ilDvGCGgGLLSepLArlg--a~V~GID~--s~~~V~vA~~h~~~d 134 (282)
T KOG1270|consen 61 SMNQTRLPFIRDDLRNRVNN--HAPGSKPLLGMKILDVGCGGGLLSEPLARLG--AQVTGIDA--SDDMVEVANEHKKMD 134 (282)
T ss_pred hccchhhhHHHHHHHhcccc--cCCCccccCCceEEEeccCccccchhhHhhC--CeeEeecc--cHHHHHHHHHhhhcC
Confidence 45566666666666654200 0000012235779999999 99999999997 69999999 676666765543333
Q ss_pred Ccccc----cEEEeecccccccccccCCccccEEEc
Q 044245 454 CFSID----RVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 454 ~l~~~----~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
-..+. ||+.....+|+.+ ++.|+||+
T Consensus 135 P~~~~~~~y~l~~~~~~~E~~~------~~fDaVvc 164 (282)
T KOG1270|consen 135 PVLEGAIAYRLEYEDTDVEGLT------GKFDAVVC 164 (282)
T ss_pred chhccccceeeehhhcchhhcc------cccceeee
Confidence 32212 3555555544443 55998887
No 281
>PHA03412 putative methyltransferase; Provisional
Probab=97.70 E-value=0.00015 Score=72.88 Aligned_cols=105 Identities=8% Similarity=0.045 Sum_probs=66.0
Q ss_pred CCcEEEecCC-chHHHHHHHcC---CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 406 QPLCVVADDS-VFLTICVARLS---KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g---~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
+..|||+|+| |.|++.+|+.- +..+|+++|- .+.+.++|+++ + .++.+++++..... + .+++|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEI--D~~Al~~Ar~n-----~--~~~~~~~~D~~~~~---~-~~~FD 116 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVEL--NHTYYKLGKRI-----V--PEATWINADALTTE---F-DTLFD 116 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEEC--CHHHHHHHHhh-----c--cCCEEEEcchhccc---c-cCCcc
Confidence 5689999999 99999888741 1458999999 77776666543 2 24778887654322 2 36899
Q ss_pred EEEcc-ccccCCcc--ccCc--chhhHHHHHhhcccccCCCceEEcce
Q 044245 482 LLIGE-PYYFGNDG--MLPW--QNLRFWKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 482 vivsE-~~~~~~e~--~l~w--~~l~f~~~r~~~~~~L~p~g~i~P~~ 524 (694)
+|||- ||+-.-.. .-.. ..+.+...+.+. +++++|+.|+|..
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~-~Ll~~G~~ILP~~ 163 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERAS-QIARQGTFIIPQM 163 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHH-HHcCCCEEEeCcc
Confidence 99999 57632100 0000 012222333333 3889999988874
No 282
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.69 E-value=5.7e-05 Score=73.87 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 391 LSMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 391 ~~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
+.-+.||.+-+.. .+|++|||+=+| |.|++-|..-| |++|+.||. ++.+.++++++++.-+++ ++++++.+++
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~--~~~a~~~i~~N~~~l~~~-~~~~v~~~d~ 101 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-AKSVVFVEK--NRKAIKIIKKNLEKLGLE-DKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES---HHHHHHHHHHHHHHT-G-GGEEEEESSH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-CCeEEEEEC--CHHHHHHHHHHHHHhCCC-cceeeeccCH
Confidence 3445555555443 478999999999 99999999986 999999999 788888999999999997 8899998864
Q ss_pred cccccccc--CCccccEEEccc-cccCCccc-cCcchhhHHHHHhhcccccCCCceEE
Q 044245 468 KCLTMDDT--QQKKVDLLIGEP-YYFGNDGM-LPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 468 ~~~~~~~l--~~~~vDvivsE~-~~~~~e~~-l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
...-. .+ ..++.|+|...| |... . ++ ..|.. ... ..||+++|.|+
T Consensus 102 ~~~l~-~~~~~~~~fDiIflDPPY~~~---~~~~-~~l~~-l~~---~~~l~~~~~ii 150 (183)
T PF03602_consen 102 FKFLL-KLAKKGEKFDIIFLDPPYAKG---LYYE-ELLEL-LAE---NNLLNEDGLII 150 (183)
T ss_dssp HHHHH-HHHHCTS-EEEEEE--STTSC---HHHH-HHHHH-HHH---TTSEEEEEEEE
T ss_pred HHHHH-hhcccCCCceEEEECCCcccc---hHHH-HHHHH-HHH---CCCCCCCEEEE
Confidence 32211 11 357899999995 5442 2 12 23321 122 24788887655
No 283
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.69 E-value=0.00031 Score=72.23 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=58.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
.++.|||+||| |.+++.+|+.....+|+++|. ++.+.+.+++.++.+++. +++++.++..+. ++.++.|+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~--~~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~----~~~~~fD~V 158 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDI--SPEALAVARKNAARLGLD--NVTFLQSDWFEP----LPGGKFDLI 158 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC--eEEEEECchhcc----CcCCceeEE
Confidence 34589999999 888877777633569999999 777777888889889984 799999875431 234789999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
|+-|
T Consensus 159 i~np 162 (251)
T TIGR03534 159 VSNP 162 (251)
T ss_pred EECC
Confidence 9985
No 284
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.69 E-value=0.00013 Score=72.74 Aligned_cols=76 Identities=8% Similarity=0.056 Sum_probs=55.9
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc-ccccccccCCccccEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK-KCLTMDDTQQKKVDLL 483 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~-~~~~~~~l~~~~vDvi 483 (694)
+.+|||+||| |.++...|+.....+|+++|. ++.+.+.+++.++.|++. +++++.+.. +.+.. .++++.+|.|
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~--s~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~l~~-~~~~~~~D~V 115 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEV--HEPGVGKALKKIEEEGLT--NLRLLCGDAVEVLLD-MFPDGSLDRI 115 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEe--chHHHHHHHHHHHHcCCC--CEEEEecCHHHHHHH-HcCccccceE
Confidence 4689999999 877766665432468999999 666666777778888884 699999987 55531 1334679999
Q ss_pred Ecc
Q 044245 484 IGE 486 (694)
Q Consensus 484 vsE 486 (694)
++-
T Consensus 116 ~~~ 118 (202)
T PRK00121 116 YLN 118 (202)
T ss_pred EEE
Confidence 873
No 285
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.69 E-value=0.00062 Score=69.74 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=80.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+||||.||.|.--+-+....+.. ..+|.-.|.|+..++..++.++.+|+++.+++.++|..+..--..+.
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~--------~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPER--------PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCC--------CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccC
Confidence 4789999999998877777766521 25899999999999999999999999987799999987653212234
Q ss_pred CCccEEEE-ccccccccCC-ChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVS-EILDSELLGE-GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvs-e~~~~~l~~e-~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++++++. -+++ ++.+ .++...+.-+...+.|||.+|
T Consensus 208 p~P~l~iVsGL~E--lF~Dn~lv~~sl~gl~~al~pgG~lI 246 (311)
T PF12147_consen 208 PAPTLAIVSGLYE--LFPDNDLVRRSLAGLARALEPGGYLI 246 (311)
T ss_pred CCCCEEEEecchh--hCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence 56787765 2222 2233 234555556667899999987
No 286
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.68 E-value=0.00028 Score=75.79 Aligned_cols=85 Identities=16% Similarity=0.028 Sum_probs=64.2
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
++.+.....++..|||+||| |.+.+-||..| .+|+++|. ++.+.+.++++++.+|+. + ++++.++.+++..
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di--~~~~~~~a~~nl~~~g~~-~-i~~~~~D~~~l~~-- 244 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDI--DWKMVAGARINLEHYGIE-D-FFVKRGDATKLPL-- 244 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcC--CHHHHHHHHHHHHHhCCC-C-CeEEecchhcCCc--
Confidence 44433334467899999999 87778888874 58999999 666666778889999997 5 8899987776543
Q ss_pred cCCccccEEEccccc
Q 044245 475 TQQKKVDLLIGEPYY 489 (694)
Q Consensus 475 l~~~~vDvivsE~~~ 489 (694)
..+++|+||+.|=|
T Consensus 245 -~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 245 -SSESVDAIATDPPY 258 (329)
T ss_pred -ccCCCCEEEECCCC
Confidence 24689999999533
No 287
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.67 E-value=0.00022 Score=74.05 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=64.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++..|||||+|+|.++..+++.+. +|+++|.++.+++..++... ...+++++++|..++....
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~~------------~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRGK------------RVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHSS------------EEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGG
T ss_pred CCCCCEEEEeCCCCccchhhHhcccC------------cceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHH
Confidence 34789999999999999999999974 99999999999999887654 3358999999999887544
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
.+..+...|++++..
T Consensus 93 ~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY 107 (262)
T ss_dssp HCSSSEEEEEEEETG
T ss_pred hhcCCceEEEEEecc
Confidence 334467789988654
No 288
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.67 E-value=0.00025 Score=66.40 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccc--ccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELE--VGV 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~--~~~ 143 (694)
.|..||++|.|||.++....++|- +...++++|.|++......+.. +.++++++|..++. ++.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv---------~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGV---------RPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCC---------CccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhh
Confidence 477999999999999999999986 3568999999999987776532 35778999998876 433
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.....||.|||.+.--.+ .-..--.+++.....|..||.++
T Consensus 113 ~~gq~~D~viS~lPll~~-P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 113 HKGQFFDSVISGLPLLNF-PMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred cCCCeeeeEEeccccccC-cHHHHHHHHHHHHHhcCCCCeEE
Confidence 344579999985422111 11111134444445677788765
No 289
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.66 E-value=0.00024 Score=74.25 Aligned_cols=89 Identities=18% Similarity=0.119 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 391 LSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 391 ~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
+.+.+.+.......++..|||+||| |.+++..|+.....+|+++|. ++.+.+.+++.++ ++.. ++++++.++..+
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDi--s~~~l~~a~~n~~-~~~~-~~i~~~~~d~~~ 169 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDI--SPEALAVARRNAK-HGLG-ARVEFLQGDWFE 169 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHH-hCCC-CcEEEEEccccC
Confidence 3344444333333456789999999 888888888744679999999 7777778887776 4444 689999885421
Q ss_pred ccccccCCccccEEEccc
Q 044245 470 LTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~ 487 (694)
.+...++|+||+-|
T Consensus 170 ----~~~~~~fD~Iv~np 183 (275)
T PRK09328 170 ----PLPGGRFDLIVSNP 183 (275)
T ss_pred ----cCCCCceeEEEECC
Confidence 12236899999974
No 290
>PRK10742 putative methyltransferase; Provisional
Probab=97.66 E-value=0.00034 Score=70.69 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=68.3
Q ss_pred cCCC--EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc------C--CCCcEEEEec
Q 044245 65 TKSC--HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN------G--MGRNIKVINK 134 (694)
Q Consensus 65 ~~~~--~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n------g--l~~~I~vi~~ 134 (694)
.++. +|||+-+|+|..++.++.+|+ +|+++|.|+.++...+.+++.. + +..+++++++
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~------------~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGC------------RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCC------------EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4565 899999999999999999986 6999999999999999998873 2 2358999999
Q ss_pred cccccccccCCCCCccEEEEccccccc
Q 044245 135 RSDELEVGVDIDSRADILVSEILDSEL 161 (694)
Q Consensus 135 ~~~~l~~~~~l~~~~DlIvse~~~~~l 161 (694)
+..++.. .....||+|..+|+...-
T Consensus 153 da~~~L~--~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 153 SSLTALT--DITPRPQVVYLDPMFPHK 177 (250)
T ss_pred cHHHHHh--hCCCCCcEEEECCCCCCC
Confidence 9877642 233579999999988543
No 291
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.65 E-value=0.00018 Score=74.02 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=56.2
Q ss_pred CCCcEEEecCC-chHHHHHHHc--CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARL--SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~--g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
++..||||||| |.++...++. ....+|+++|. ++.+.+.+++.+..++.. ++|+++.+..+++. ....|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~--S~~ml~~A~~~~~~~~~~-~~v~~~~~d~~~~~-----~~~~D 127 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDN--SPAMIERCRRHIDAYKAP-TPVDVIEGDIRDIA-----IENAS 127 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeC--CHHHHHHHHHHHHhcCCC-CCeEEEeCChhhCC-----CCCCC
Confidence 56789999999 8877666652 12368999999 777777888888888886 78999998766543 24579
Q ss_pred EEEcc
Q 044245 482 LLIGE 486 (694)
Q Consensus 482 vivsE 486 (694)
+||+-
T Consensus 128 ~vv~~ 132 (247)
T PRK15451 128 MVVLN 132 (247)
T ss_pred EEehh
Confidence 88874
No 292
>PHA03411 putative methyltransferase; Provisional
Probab=97.63 E-value=0.00033 Score=72.09 Aligned_cols=115 Identities=11% Similarity=0.052 Sum_probs=69.1
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
...|||+||| |.+++.+++..+..+|+++|. ++.+.+++++ | + .+++++.++..+... .++.|+||
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDi--sp~al~~Ar~----n-~--~~v~~v~~D~~e~~~----~~kFDlII 131 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVEL--NPEFARIGKR----L-L--PEAEWITSDVFEFES----NEKFDVVI 131 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHH----h-C--cCCEEEECchhhhcc----cCCCcEEE
Confidence 3579999999 999888877533579999999 6666555544 2 3 357888887654431 36799999
Q ss_pred ccc-cccCCccccCcchhhHHHH-----Hhh--cccccCCCc-eEEcceEEEEEEEccChhhh
Q 044245 485 GEP-YYFGNDGMLPWQNLRFWKE-----RSK--LDPVLSKEV-IIMPFKGILKACAIFCPDIW 538 (694)
Q Consensus 485 sE~-~~~~~e~~l~w~~l~f~~~-----r~~--~~~~L~p~g-~i~P~~a~l~~~~v~~~~l~ 538 (694)
+-| |+.. ..-.+... +.|. ++. +++++++.+ .|.|+. ..+.+ .+.+.++
T Consensus 132 sNPPF~~l--~~~d~~~~-~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G-~~~~~-yss~~~y 189 (279)
T PHA03411 132 SNPPFGKI--NTTDTKDV-FEYTGGEFEFKVMTLGQKFADVGYFIVPTG-SAGFA-YSGRPYY 189 (279)
T ss_pred EcCCcccc--Cchhhhhh-hhhccCccccccccHHHHHhhhHheecCCc-eEEEE-Eeccccc
Confidence 984 5432 22222222 1121 111 134567766 444554 45444 6665554
No 293
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.63 E-value=0.00037 Score=67.30 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=57.9
Q ss_pred HHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC
Q 044245 398 RNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ 476 (694)
Q Consensus 398 ~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~ 476 (694)
.+.....++..|||+|+| |.++..+++. +.+|+++|. ++.+.+.+++.+.. . +++++++++..++...
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~--~~~~~~~~~~~~~~---~-~~v~ii~~D~~~~~~~--- 74 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEI--DPRLAPRLREKFAA---A-DNLTVIHGDALKFDLP--- 74 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEEC--CHHHHHHHHHHhcc---C-CCEEEEECchhcCCcc---
Confidence 333333456789999999 9999998887 368999999 66555666665533 2 5899999987766532
Q ss_pred CccccEEEccc
Q 044245 477 QKKVDLLIGEP 487 (694)
Q Consensus 477 ~~~vDvivsE~ 487 (694)
..+.|.|+|.+
T Consensus 75 ~~~~d~vi~n~ 85 (169)
T smart00650 75 KLQPYKVVGNL 85 (169)
T ss_pred ccCCCEEEECC
Confidence 23589999985
No 294
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.63 E-value=0.00026 Score=71.33 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=60.3
Q ss_pred CCCCcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc-cc-cccccCCcc
Q 044245 404 RVQPLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK-CL-TMDDTQQKK 479 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~-~~-~~~~l~~~~ 479 (694)
+++..++|+||| |-+|+..+. .+ ...|+|++. ++.|..+|.++++.++++ ++|.|++-.-| +- ..-.+..++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~--S~~Ai~La~eN~qr~~l~-g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDV--SKAAIKLAKENAQRLKLS-GRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCC-CceEEEEec--cHHHHHHHHHHHHHHhhc-CceEEEecccccccccccccccCc
Confidence 345589999999 766655544 55 789999999 888888999999999998 99999976322 11 111233578
Q ss_pred ccEEEccc
Q 044245 480 VDLLIGEP 487 (694)
Q Consensus 480 vDvivsE~ 487 (694)
.|+|||.|
T Consensus 223 ~dllvsNP 230 (328)
T KOG2904|consen 223 IDLLVSNP 230 (328)
T ss_pred eeEEecCC
Confidence 99999985
No 295
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.60 E-value=0.0002 Score=76.47 Aligned_cols=77 Identities=8% Similarity=-0.064 Sum_probs=62.9
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+||| |.+++.+|+.| ++|+++|. ++.+.+.|++.++.||+ ++|+++.++.+++... . .++.|+
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~--s~~av~~A~~n~~~~~l--~~v~~~~~D~~~~~~~-~-~~~~D~ 243 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG--MQLTGIEI--SAEAIACAKQSAAELGL--TNVQFQALDSTQFATA-Q-GEVPDL 243 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC--CEEEEEeC--CHHHHHHHHHHHHHcCC--CceEEEEcCHHHHHHh-c-CCCCeE
Confidence 356789999999 99999999974 69999999 77777889999999999 4799999987765321 1 246899
Q ss_pred EEcccc
Q 044245 483 LIGEPY 488 (694)
Q Consensus 483 ivsE~~ 488 (694)
||..|=
T Consensus 244 Vv~dPP 249 (315)
T PRK03522 244 VLVNPP 249 (315)
T ss_pred EEECCC
Confidence 999863
No 296
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.60 E-value=0.00042 Score=68.06 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=78.8
Q ss_pred HHHHHHHhhccCCCE-EEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 55 AYRLAIDKMVTKSCH-VLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~-VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
...+++++.+.+... |||||||||-.+..+|++.+ ...-.-.|.++......+..+...++++--.-+.
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP----------~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~ 82 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP----------HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLA 82 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC----------CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeE
Confidence 455667777776665 99999999999999999986 4556677888888877888888777753222222
Q ss_pred cccccccccc-----CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 134 KRSDELEVGV-----DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 134 ~~~~~l~~~~-----~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
-|..+-..+. ...+.||.|++--+-+ +......+.++....++|++||.++
T Consensus 83 lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lH-I~p~~~~~~lf~~a~~~L~~gG~L~ 138 (204)
T PF06080_consen 83 LDVSAPPWPWELPAPLSPESFDAIFCINMLH-ISPWSAVEGLFAGAARLLKPGGLLF 138 (204)
T ss_pred eecCCCCCccccccccCCCCcceeeehhHHH-hcCHHHHHHHHHHHHHhCCCCCEEE
Confidence 2333221111 1235899999832221 1122334556667778999999987
No 297
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.60 E-value=0.00029 Score=70.37 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=57.8
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
+.+.....+|..||+||+| |.++-++|+..|. .+|+++|. .+...+.|++.++..++ ++|+++.++...--.
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~--~~~l~~~A~~~l~~~~~--~nv~~~~gdg~~g~~-- 137 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVER--DPELAERARRNLARLGI--DNVEVVVGDGSEGWP-- 137 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEES--BHHHHHHHHHHHHHHTT--HSEEEEES-GGGTTG--
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECc--cHHHHHHHHHHHHHhcc--CceeEEEcchhhccc--
Confidence 3344445688899999999 9888887776333 36999999 66666778888998888 489999886432211
Q ss_pred cCCccccEEEccc
Q 044245 475 TQQKKVDLLIGEP 487 (694)
Q Consensus 475 l~~~~vDvivsE~ 487 (694)
...+.|.|+...
T Consensus 138 -~~apfD~I~v~~ 149 (209)
T PF01135_consen 138 -EEAPFDRIIVTA 149 (209)
T ss_dssp -GG-SEEEEEESS
T ss_pred -cCCCcCEEEEee
Confidence 135689999985
No 298
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.60 E-value=0.00041 Score=77.74 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=65.4
Q ss_pred HhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCC
Q 044245 400 ALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQ 477 (694)
Q Consensus 400 ~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~ 477 (694)
.....++..|||+|+| |-.++.+|+. ++..+|+++|. ++.+.+.+++.++.+|+. + |+++.++..++.. .+ +
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi--~~~~l~~~~~n~~~~g~~-~-v~~~~~D~~~~~~-~~-~ 318 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDI--HEHKLKLIEENAKRLGLT-N-IETKALDARKVHE-KF-A 318 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHcCCC-e-EEEEeCCcccccc-hh-c
Confidence 3333467789999999 8888777765 33579999999 666667788899999996 4 9999987765421 22 2
Q ss_pred ccccEEEccccccCCcccc
Q 044245 478 KKVDLLIGEPYYFGNDGML 496 (694)
Q Consensus 478 ~~vDvivsE~~~~~~e~~l 496 (694)
+++|+|++.+-+.+ .|++
T Consensus 319 ~~fD~Vl~D~Pcsg-~G~~ 336 (444)
T PRK14902 319 EKFDKILVDAPCSG-LGVI 336 (444)
T ss_pred ccCCEEEEcCCCCC-Ceee
Confidence 67999999864443 2443
No 299
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.59 E-value=0.00051 Score=73.16 Aligned_cols=79 Identities=8% Similarity=-0.053 Sum_probs=57.4
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
....++..|||+|+| |.++..+|+..+. .+|+++|. ++.+.+.+++.++.+|+ ++|+++.++..+... ...
T Consensus 76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDi--s~~~l~~Ar~~l~~~g~--~nV~~i~gD~~~~~~---~~~ 148 (322)
T PRK13943 76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY--SRKICEIAKRNVRRLGI--ENVIFVCGDGYYGVP---EFA 148 (322)
T ss_pred cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEEC--CHHHHHHHHHHHHHcCC--CcEEEEeCChhhccc---ccC
Confidence 334467899999999 9888877775332 47999999 66666678888888998 478888886543321 124
Q ss_pred cccEEEcc
Q 044245 479 KVDLLIGE 486 (694)
Q Consensus 479 ~vDvivsE 486 (694)
..|+|+.-
T Consensus 149 ~fD~Ii~~ 156 (322)
T PRK13943 149 PYDVIFVT 156 (322)
T ss_pred CccEEEEC
Confidence 68999875
No 300
>PRK14968 putative methyltransferase; Provisional
Probab=97.59 E-value=0.00024 Score=69.48 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=57.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCccccc-EEEeecccccccccccCCccccE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDR-VEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~-i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
+++.|||+||| |.+++.+|+.| .+|+++|. ++.+.+.+++.++.|++. ++ ++++.++..+ .+..+++|+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~--s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~----~~~~~~~d~ 93 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDI--NPYAVECAKCNAKLNNIR-NNGVEVIRSDLFE----PFRGDKFDV 93 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc--ceEEEEEC--CHHHHHHHHHHHHHcCCC-CcceEEEeccccc----cccccCceE
Confidence 56789999999 99998888874 79999999 676667788888888886 54 8887765322 222347999
Q ss_pred EEccc
Q 044245 483 LIGEP 487 (694)
Q Consensus 483 ivsE~ 487 (694)
|++.+
T Consensus 94 vi~n~ 98 (188)
T PRK14968 94 ILFNP 98 (188)
T ss_pred EEECC
Confidence 99974
No 301
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.58 E-value=0.00036 Score=71.93 Aligned_cols=75 Identities=9% Similarity=-0.061 Sum_probs=53.9
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEc
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
..|||+||| |.+++.+|+..+..+|+++|. ++.+.+.++++++.||. ++++++..+.-...+ .+++|+||+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDi--s~~al~~A~~N~~~~~~-----~~~~~D~~~~l~~~~-~~~fDlVv~ 159 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADI--DPAAVRCARRNLADAGG-----TVHEGDLYDALPTAL-RGRVDILAA 159 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCC-----EEEEeechhhcchhc-CCCEeEEEE
Confidence 479999999 999988776533468999999 78787888888887763 566665433211112 257999999
Q ss_pred cc-cc
Q 044245 486 EP-YY 489 (694)
Q Consensus 486 E~-~~ 489 (694)
-| |.
T Consensus 160 NPPy~ 164 (251)
T TIGR03704 160 NAPYV 164 (251)
T ss_pred CCCCC
Confidence 85 43
No 302
>PRK00536 speE spermidine synthase; Provisional
Probab=97.58 E-value=0.00051 Score=70.69 Aligned_cols=116 Identities=9% Similarity=-0.058 Sum_probs=83.6
Q ss_pred HHHHHHHHhh----ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH--cCCC-
Q 044245 54 RAYRLAIDKM----VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV--NGMG- 126 (694)
Q Consensus 54 ~~y~~ai~~~----~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~--ngl~- 126 (694)
-.|.+.|... ....++||-||.|-|.....+.|.- .+|+-||+++.+++.+++.... .++.
T Consensus 56 fiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~------------~~v~mVeID~~Vv~~~k~~lP~~~~~~~D 123 (262)
T PRK00536 56 HIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD------------THVDFVQADEKILDSFISFFPHFHEVKNN 123 (262)
T ss_pred hhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcC------------CeeEEEECCHHHHHHHHHHCHHHHHhhcC
Confidence 3566666542 2345899999999999999999883 3999999999999999995432 1233
Q ss_pred CcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEE
Q 044245 127 RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQL 195 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ 195 (694)
.|++++.. +. ....++||+||.+.+. -+.+.+..++.|+|||+++-+....+..+
T Consensus 124 pRv~l~~~----~~--~~~~~~fDVIIvDs~~--------~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~ 178 (262)
T PRK00536 124 KNFTHAKQ----LL--DLDIKKYDLIICLQEP--------DIHKIDGLKRMLKEDGVFISVAKHPLLEH 178 (262)
T ss_pred CCEEEeeh----hh--hccCCcCCEEEEcCCC--------ChHHHHHHHHhcCCCcEEEECCCCcccCH
Confidence 48888762 11 1112689999987432 13444567789999999999988877553
No 303
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.58 E-value=0.00056 Score=69.24 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 391 LSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 391 ~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
..+++++.......+|..||||+|| |-+++..|+..|..+|++++- ++-+...+++-.+.-|.. + |++++++.|+
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~--s~~ML~~a~~k~~~~~~~-~-i~fv~~dAe~ 112 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDI--SESMLEVAREKLKKKGVQ-N-VEFVVGDAEN 112 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEEC--CHHHHHHHHHHhhccCcc-c-eEEEEechhh
Confidence 3456666555544478899999999 999999999755889999999 555556676666666665 5 9999999998
Q ss_pred ccccccCCccccEEEc
Q 044245 470 LTMDDTQQKKVDLLIG 485 (694)
Q Consensus 470 ~~~~~l~~~~vDvivs 485 (694)
|..+ ....|++..
T Consensus 113 LPf~---D~sFD~vt~ 125 (238)
T COG2226 113 LPFP---DNSFDAVTI 125 (238)
T ss_pred CCCC---CCccCEEEe
Confidence 8754 467887755
No 304
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.58 E-value=0.00018 Score=80.56 Aligned_cols=95 Identities=16% Similarity=0.006 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
++...+.+.+.....++..|||+||| |.+++.+|+.+ ++|+++|. ++.+.+.|++.++.||++ +++++.++.+
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~--s~~al~~A~~n~~~~~~~--~v~~~~~d~~ 355 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEG--VEAMVERARENARRNGLD--NVTFYHANLE 355 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeC--CHHHHHHHHHHHHHcCCC--ceEEEEeChH
Confidence 33333444444444467799999999 99999999873 69999999 777778889999999984 6999999876
Q ss_pred ccccc-ccCCccccEEEcccccc
Q 044245 469 CLTMD-DTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 469 ~~~~~-~l~~~~vDvivsE~~~~ 490 (694)
+.... .+..++.|+||+.|=+.
T Consensus 356 ~~l~~~~~~~~~fD~Vi~dPPr~ 378 (443)
T PRK13168 356 EDFTDQPWALGGFDKVLLDPPRA 378 (443)
T ss_pred HhhhhhhhhcCCCCEEEECcCCc
Confidence 53211 12235689999996444
No 305
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.57 E-value=0.00021 Score=77.41 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc-c
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL-T 471 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~-~ 471 (694)
|+++.+.. +|+.||++=+= |--|+.||+.| |++|++|+. |..+.+.++++++-||++.+++.+|.+++=+. .
T Consensus 209 R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~--S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~ 282 (393)
T COG1092 209 RRALGELA---AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDL--SKRALEWARENAELNGLDGDRHRFIVGDVFKWLR 282 (393)
T ss_pred HHHHhhhc---cCCeEEEecccCcHHHHHHHhcC-CCceEEEec--cHHHHHHHHHHHHhcCCCccceeeehhhHHHHHH
Confidence 34455544 47899997544 77899999986 999999999 88888999999999999768899998865322 1
Q ss_pred ccccCCccccEEEccc-cccCCccccCcchhhHH-HHHhhcccccCCCceEEcceEE
Q 044245 472 MDDTQQKKVDLLIGEP-YYFGNDGMLPWQNLRFW-KERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~-~~~~~e~~l~w~~l~f~-~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
..+-.+++.|+||-.| -|.-...++ |++.+-. -.-+....+|+|||+++=+.+.
T Consensus 283 ~~~~~g~~fDlIilDPPsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 283 KAERRGEKFDLIILDPPSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHhcCCcccEEEECCcccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 1111257899999995 343323455 5654311 1111113579999988766554
No 306
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.56 E-value=0.00017 Score=61.59 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=59.4
Q ss_pred EEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcccc
Q 044245 410 VVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPY 488 (694)
Q Consensus 410 ldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~ 488 (694)
||+|+| |..+-+.++.+ ..+|+++|. ++.+.+.+++..+. ..+.++.+..+++.. +.+.+|+|++--.
T Consensus 1 LdiG~G~G~~~~~l~~~~-~~~v~~~D~--~~~~~~~~~~~~~~-----~~~~~~~~d~~~l~~---~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG-GASVTGIDI--SEEMLEQARKRLKN-----EGVSFRQGDAEDLPF---PDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHTT-TCEEEEEES---HHHHHHHHHHTTT-----STEEEEESBTTSSSS----TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhcc-CCEEEEEeC--CHHHHHHHHhcccc-----cCchheeehHHhCcc---ccccccccccccc
Confidence 799999 88888887874 789999999 66555566666554 345578877776643 4688999999753
Q ss_pred ccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 489 YFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 489 ~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.. ++ .... +.++ ..|.|||||.++
T Consensus 70 ~~~----~~--~~~~-~l~e-~~rvLk~gG~l~ 94 (95)
T PF08241_consen 70 LHH----LE--DPEA-ALRE-IYRVLKPGGRLV 94 (95)
T ss_dssp GGG----SS--HHHH-HHHH-HHHHEEEEEEEE
T ss_pred eee----cc--CHHH-HHHH-HHHHcCcCeEEe
Confidence 321 11 2211 2222 345799999764
No 307
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.55 E-value=0.0002 Score=69.53 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
|+.-+...+....=..++++||| |.|+...|.. ..++.+++. ++.|.+.|++-+ .++ ..|++++..+.+.
T Consensus 31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDi--s~~Al~~Ar~Rl--~~~--~~V~~~~~dvp~~- 101 (201)
T PF05401_consen 31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDI--SPRALARARERL--AGL--PHVEWIQADVPEF- 101 (201)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES---HHHHHHHHHHT--TT---SSEEEEES-TTT--
T ss_pred HHHHHHHhcCccccceeEecCCCccHHHHHHHHh--hCceEEEeC--CHHHHHHHHHhc--CCC--CCeEEEECcCCCC-
Confidence 44445443432222578999999 9998877776 579999999 777766666544 345 4799999865433
Q ss_pred ccccCCccccEE-Eccc-cccCCccccCcchhhHHHHHhhcccccCCCceEEcceE
Q 044245 472 MDDTQQKKVDLL-IGEP-YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKG 525 (694)
Q Consensus 472 ~~~l~~~~vDvi-vsE~-~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a 525 (694)
.+.++.|+| +||. ||+. +.+.|. .+.+++...|+|||.++=.++
T Consensus 102 ---~P~~~FDLIV~SEVlYYL~-----~~~~L~--~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 102 ---WPEGRFDLIVLSEVLYYLD-----DAEDLR--AALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -----SS-EEEEEEES-GGGSS-----SHHHHH--HHHHHHHHTEEEEEEEEEEEE
T ss_pred ---CCCCCeeEEEEehHhHcCC-----CHHHHH--HHHHHHHHHhCCCCEEEEEEe
Confidence 346788955 5685 4542 112232 223333446999997765544
No 308
>PLN02476 O-methyltransferase
Probab=97.55 E-value=0.00044 Score=71.72 Aligned_cols=115 Identities=7% Similarity=-0.023 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
+...+.+.. +.+.||+||+| |.-++.+|++ +...+|+++|. .+...++|++.++.+|++ ++|+++.|...+.
T Consensus 109 lL~~L~~~~---~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~--d~e~~~~Ar~n~~~aGl~-~~I~li~GdA~e~ 182 (278)
T PLN02476 109 LLAMLVQIL---GAERCIEVGVYTGYSSLAVALVLPESGCLVACER--DSNSLEVAKRYYELAGVS-HKVNVKHGLAAES 182 (278)
T ss_pred HHHHHHHhc---CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHH
Confidence 344444443 46799999999 9999988885 21347999999 777778899999999998 9999999987543
Q ss_pred ccccc----CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceE
Q 044245 471 TMDDT----QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKG 525 (694)
Q Consensus 471 ~~~~l----~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a 525 (694)
-. .+ ..++.|.|+-..--. .... |.... .++|+|||+|+=+-.
T Consensus 183 L~-~l~~~~~~~~FD~VFIDa~K~---~Y~~-------y~e~~-l~lL~~GGvIV~DNv 229 (278)
T PLN02476 183 LK-SMIQNGEGSSYDFAFVDADKR---MYQD-------YFELL-LQLVRVGGVIVMDNV 229 (278)
T ss_pred HH-HHHhcccCCCCCEEEECCCHH---HHHH-------HHHHH-HHhcCCCcEEEEecC
Confidence 21 11 124688887764100 1111 22222 236999998775533
No 309
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=3e-05 Score=71.83 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=79.6
Q ss_pred CCCEEEEEcCC-CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC--CcEEEEeccccccccc
Q 044245 66 KSCHVLDIGAG-TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG--RNIKVINKRSDELEVG 142 (694)
Q Consensus 66 ~~~~VLDiG~G-tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~--~~I~vi~~~~~~l~~~ 142 (694)
.|..||++|.| +|+.++|+|.... ...|...|-|+..++..++++..|..+ .++.++.-....-..
T Consensus 29 rg~~ilelgggft~laglmia~~a~----------~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs- 97 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAP----------DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS- 97 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecC----------CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH-
Confidence 36789999999 7899999887754 578999999999999999998887332 234333322221110
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE---cCceE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV---PCRVT 190 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii---P~~~~ 190 (694)
.....+||+|++. .+++.+..-..+.+.+.++|+|.|+.+ |.|+.
T Consensus 98 q~eq~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 98 QQEQHTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred HHhhCcccEEEec---cchhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 1122489999985 566666677788999999999998743 66654
No 310
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.53 E-value=0.00049 Score=71.48 Aligned_cols=113 Identities=10% Similarity=0.031 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
+-..+|.. +...++..||||||| |.++...|+.. ..+|++++. ++.+...+++.... . ++|+++.+..++.
T Consensus 40 ~~~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~--s~~~~~~a~~~~~~---~-~~i~~~~~D~~~~ 111 (263)
T PTZ00098 40 ATTKILSD-IELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDI--CEKMVNIAKLRNSD---K-NKIEFEANDILKK 111 (263)
T ss_pred HHHHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEEC--CHHHHHHHHHHcCc---C-CceEEEECCcccC
Confidence 33444444 344467899999999 87777666642 248999999 66554555544332 3 6788888765533
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
. ++.+..|+|++-..+.. ++.+... ..-....++|||||.++
T Consensus 112 ~---~~~~~FD~V~s~~~l~h----~~~~d~~--~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 112 D---FPENTFDMIYSRDAILH----LSYADKK--KLFEKCYKWLKPNGILL 153 (263)
T ss_pred C---CCCCCeEEEEEhhhHHh----CCHHHHH--HHHHHHHHHcCCCcEEE
Confidence 2 33468999999531111 1101110 11112234799999876
No 311
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.52 E-value=0.00027 Score=67.70 Aligned_cols=76 Identities=11% Similarity=-0.027 Sum_probs=54.7
Q ss_pred EEEcCCHHHHHHHHHHHHHc--CCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCC
Q 044245 104 TACESYLPMVKLMKKVLHVN--GMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN 181 (694)
Q Consensus 104 ~avE~s~~~~~~A~~~~~~n--gl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~ 181 (694)
+|+|.|++|++.|+++.+.. +...+|+++.++..+++.+ ++.||+|++.. .+-+-.-...+++.+.+.|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~v~~~~---~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD---DCEFDAVTMGY---GLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC---CCCeeEEEecc---hhhcCCCHHHHHHHHHHHcCcC
Confidence 48999999999998776532 2234799999999988753 36899999842 1211122455666777899999
Q ss_pred CeEE
Q 044245 182 PLTV 185 (694)
Q Consensus 182 G~ii 185 (694)
|.++
T Consensus 75 G~l~ 78 (160)
T PLN02232 75 SRVS 78 (160)
T ss_pred eEEE
Confidence 9986
No 312
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.51 E-value=0.00067 Score=63.46 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=58.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--CCCcEEEEeccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--MGRNIKVINKRSDELEVG 142 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l~~~I~vi~~~~~~l~~~ 142 (694)
.+...|+|+|||.|.|+..++...... .+..+|+++|.++...+.+++..+..+ +..++....++..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 96 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNS------SPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS- 96 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhc------CCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-
Confidence 346899999999999999999832100 024799999999999999999998877 54567776666554321
Q ss_pred cCCCCCccEEEE
Q 044245 143 VDIDSRADILVS 154 (694)
Q Consensus 143 ~~l~~~~DlIvs 154 (694)
....+++++
T Consensus 97 ---~~~~~~~vg 105 (141)
T PF13679_consen 97 ---SDPPDILVG 105 (141)
T ss_pred ---cCCCeEEEE
Confidence 245667665
No 313
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.51 E-value=0.00043 Score=68.05 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=86.9
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
.++...+..+.++.||||--|.|+.++.+.+. ...+++.|+++..++.|.++++++++.++|++..+|..
T Consensus 8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~----------~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl 77 (226)
T COG2384 8 TTVANLVKQGARIADIGSDHAYLPIYLVKNNP----------ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL 77 (226)
T ss_pred HHHHHHHHcCCceeeccCchhHhHHHHHhcCC----------cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc
Confidence 44566677788899999999999999999885 56899999999999999999999999999999999874
Q ss_pred ccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 138 ELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
..- .....+|+|+-.-||..+ +..+ |..|...+|.--..-.||...+
T Consensus 78 ~~l---~~~d~~d~ivIAGMGG~l-----I~~I-------Lee~~~~l~~~~rlILQPn~~~ 124 (226)
T COG2384 78 AVL---ELEDEIDVIVIAGMGGTL-----IREI-------LEEGKEKLKGVERLILQPNIHT 124 (226)
T ss_pred ccc---CccCCcCEEEEeCCcHHH-----HHHH-------HHHhhhhhcCcceEEECCCCCH
Confidence 321 222479988876555322 2233 3334445555555666776655
No 314
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.50 E-value=0.0012 Score=65.21 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=70.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+||-+|+.+|.---.++.-.. +.+.|||||.++...+-.-..++.. .||--|-+|++.-....
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg---------~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVG---------PDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYR 138 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHT---------TTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGT
T ss_pred CCCCCEEEEecccCCCccchhhhccC---------CCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhh
Confidence 56789999999999988777777654 3579999999997655544444443 36777778887644333
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+-+.+|+|+++.-. .+....+..-.+.+|++||.++
T Consensus 139 ~lv~~VDvI~~DVaQ-----p~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 139 MLVEMVDVIFQDVAQ-----PDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp TTS--EEEEEEE-SS-----TTHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccEEEecCCC-----hHHHHHHHHHHHhhccCCcEEE
Confidence 345689999986432 3445556666667999999876
No 315
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.00091 Score=64.77 Aligned_cols=127 Identities=14% Similarity=0.083 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 390 RLSMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
++.-+.||.+-+.. +.|++|||+=+| |.|++-|+.-| |++|+.||. +..+.++++++++.-++. .+.+++..+
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~--~~~a~~~l~~N~~~l~~~-~~~~~~~~d 101 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEK--DRKAVKILKENLKALGLE-GEARVLRND 101 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEec--CHHHHHHHHHHHHHhCCc-cceEEEeec
Confidence 33445666666553 678999999999 99999999996 999999999 778888899999998887 889999987
Q ss_pred cccccccccCC-ccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEE
Q 044245 467 KKCLTMDDTQQ-KKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 467 ~~~~~~~~l~~-~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
+... +..+.. +..|+|...|=|. .++++ ..+.. .+.. -..||+|+|.|+=.+..
T Consensus 102 a~~~-L~~~~~~~~FDlVflDPPy~--~~l~~-~~~~~-~~~~-~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 102 ALRA-LKQLGTREPFDLVFLDPPYA--KGLLD-KELAL-LLLE-ENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHHH-HHhcCCCCcccEEEeCCCCc--cchhh-HHHHH-HHHH-hcCCcCCCcEEEEEeCC
Confidence 7633 112221 2499999996444 25554 22211 1111 12489999977655443
No 316
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.49 E-value=9.8e-05 Score=72.64 Aligned_cols=122 Identities=14% Similarity=0.115 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc----ccc
Q 044245 387 GEWRLSMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS----IDR 459 (694)
Q Consensus 387 ~~r~~~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~----~~~ 459 (694)
+.+++-|..|+.+...- .+|.+|||.=+| |.-+..|++.| |.+|+.+|- .+.-- ++++-|-.| +-.
T Consensus 114 t~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEk--dp~VL----eLa~lNPwSr~l~~~~ 186 (287)
T COG2521 114 TKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEK--DPNVL----ELAKLNPWSRELFEIA 186 (287)
T ss_pred ccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEee--CCCeE----EeeccCCCCccccccc
Confidence 44566788888776433 358899998888 99999999997 999999998 44422 245667665 246
Q ss_pred EEEeecccccccccccCCccccEEEccc-cccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 460 VEILQKGKKCLTMDDTQQKKVDLLIGEP-YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 460 i~vi~~~~~~~~~~~l~~~~vDvivsE~-~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
|++|.|++.++-. +++.+.+|+||-.| =|.. -|=|= .+.|... +-|.|+|||++|=
T Consensus 187 i~iilGD~~e~V~-~~~D~sfDaIiHDPPRfS~-AgeLY--seefY~E---l~RiLkrgGrlFH 243 (287)
T COG2521 187 IKIILGDAYEVVK-DFDDESFDAIIHDPPRFSL-AGELY--SEEFYRE---LYRILKRGGRLFH 243 (287)
T ss_pred cEEecccHHHHHh-cCCccccceEeeCCCccch-hhhHh--HHHHHHH---HHHHcCcCCcEEE
Confidence 8999998877643 45678899999996 2222 11000 1222111 1247999999874
No 317
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.48 E-value=0.00036 Score=76.15 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=62.6
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
+..|||+++| |++++.+|+..++.+|+++|. ++.|.++++++++.||++ .+++++++++++-.. .++.|+|+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Di--n~~Av~~a~~N~~~N~~~--~~~v~~~Da~~~l~~---~~~fD~V~ 130 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDI--NPDAVELIKKNLELNGLE--NEKVFNKDANALLHE---ERKFDVVD 130 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHHHHHhCCC--ceEEEhhhHHHHHhh---cCCCCEEE
Confidence 4579999999 999999987645889999999 888889999999999995 577888877654211 35699999
Q ss_pred cccc
Q 044245 485 GEPY 488 (694)
Q Consensus 485 sE~~ 488 (694)
..||
T Consensus 131 lDP~ 134 (382)
T PRK04338 131 IDPF 134 (382)
T ss_pred ECCC
Confidence 9996
No 318
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.47 E-value=0.00042 Score=72.93 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=63.6
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.+.....++..|||||+| |.|+...++. +.+|+++|- ++.+.+.+++.+..+++. +++++++++..++..
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEi--D~~li~~l~~~~~~~~~~-~~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEI--DPRMVAELKKRFQNSPLA-SKLEVIEGDALKTEF-- 99 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEEC--CHHHHHHHHHHHHhcCCC-CcEEEEECCHhhhcc--
Confidence 34444444567899999999 9888888886 468999999 666667777777777765 789999997765432
Q ss_pred cCCccccEEEcc-cccc
Q 044245 475 TQQKKVDLLIGE-PYYF 490 (694)
Q Consensus 475 l~~~~vDvivsE-~~~~ 490 (694)
.+.|+||+- ||+-
T Consensus 100 ---~~~d~VvaNlPY~I 113 (294)
T PTZ00338 100 ---PYFDVCVANVPYQI 113 (294)
T ss_pred ---cccCEEEecCCccc
Confidence 357999998 6654
No 319
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.47 E-value=0.00096 Score=67.02 Aligned_cols=113 Identities=10% Similarity=-0.015 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
.+++.+.+.....++++|||+||| |.++..+++.++. .+++++|. ++.+...+++... .. ++++++.+...+
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~--~~~~~~~~~~~~~---~~-~~i~~~~~d~~~ 99 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDF--SSEMLEVAKKKSE---LP-LNIEFIQADAEA 99 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEEC--CHHHHHHHHHHhc---cC-CCceEEecchhc
Confidence 344455554444467899999999 8888777777532 48999999 6655445544433 33 678888887665
Q ss_pred ccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 470 LTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.. +.+++|+|++--.+. .+ + +.. ..-..+.++|+|||.++
T Consensus 100 ~~~---~~~~~D~i~~~~~~~---~~-~-~~~---~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 100 LPF---EDNSFDAVTIAFGLR---NV-T-DIQ---KALREMYRVLKPGGRLV 140 (223)
T ss_pred CCC---CCCcEEEEEEeeeeC---Cc-c-cHH---HHHHHHHHHcCCCcEEE
Confidence 542 246799998742111 11 1 111 11122234799999765
No 320
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00051 Score=71.90 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=58.6
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE 486 (694)
.|+|+|+| |.+++.+|+.+....|+|++- ++.|.++|+++++.||+ +++.++++. +-. .+ .+++|+|||-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Di--s~~Al~~A~~Na~~~~l--~~~~~~~~d---lf~-~~-~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDI--SPDALALARENAERNGL--VRVLVVQSD---LFE-PL-RGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEEC--CHHHHHHHHHHHHHcCC--ccEEEEeee---ccc-cc-CCceeEEEeC
Confidence 69999999 999999999864459999999 88888999999999999 456666652 211 22 2489999999
Q ss_pred cccc
Q 044245 487 PYYF 490 (694)
Q Consensus 487 ~~~~ 490 (694)
|=|.
T Consensus 184 PPYi 187 (280)
T COG2890 184 PPYI 187 (280)
T ss_pred CCCC
Confidence 6333
No 321
>PRK00811 spermidine synthase; Provisional
Probab=97.46 E-value=0.0006 Score=71.60 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCc-ccccEEEeecccccccccccCCccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCF-SIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l-~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..+.||+||+| |.++..+++..++++|.+||- .+...+++++.... +++ +..+++++.++..+.... ..++.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEi--d~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEI--DERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeC--CHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcc
Confidence 35689999999 888877777644889999999 66556677766543 222 226899998876554321 24689
Q ss_pred cEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 481 DLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+||+..+.-. + .+ ..| .| +. ...+.|+|||+++
T Consensus 152 DvIi~D~~dp~--~-~~-~~l~t~ef-~~--~~~~~L~~gGvlv 188 (283)
T PRK00811 152 DVIIVDSTDPV--G-PA-EGLFTKEF-YE--NCKRALKEDGIFV 188 (283)
T ss_pred cEEEECCCCCC--C-ch-hhhhHHHH-HH--HHHHhcCCCcEEE
Confidence 99999743221 1 11 122 11 11 1234699999887
No 322
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.46 E-value=0.00039 Score=68.76 Aligned_cols=77 Identities=10% Similarity=-0.020 Sum_probs=54.8
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
..+||||||| |.+++..|+.....+|+++|. ++.+.+.+++.++.+++. +|+++++++.++....++...+|.|+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~--~~~~l~~a~~~~~~~~l~--ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEI--HTPIVLAANNKANKLGLK--NLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEe--eHHHHHHHHHHHHHhCCC--CEEEEccCHHHHHHhhCCCCceeEEE
Confidence 4589999999 877766666533568999999 565555666677778884 79999998876542223334688887
Q ss_pred cc
Q 044245 485 GE 486 (694)
Q Consensus 485 sE 486 (694)
.-
T Consensus 93 ~~ 94 (194)
T TIGR00091 93 LN 94 (194)
T ss_pred EE
Confidence 64
No 323
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.45 E-value=0.00073 Score=69.91 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=63.1
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+.......++..||||||| |.++...|+..+..+|+++|. ++.+.+.+++. + .+++++.++.+++.
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~--s~~~i~~a~~~-----~--~~~~~~~~d~~~~~---- 89 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDS--SPAMLAEARSR-----L--PDCQFVEADIASWQ---- 89 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHh-----C--CCCeEEECchhccC----
Confidence 3344433456799999999 888776666533579999999 66555555432 2 35777777655442
Q ss_pred CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 476 QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 476 ~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+..++|+|++-..+. .++ ... .+-.++.+.|+|||.++
T Consensus 90 ~~~~fD~v~~~~~l~----~~~-d~~---~~l~~~~~~LkpgG~~~ 127 (258)
T PRK01683 90 PPQALDLIFANASLQ----WLP-DHL---ELFPRLVSLLAPGGVLA 127 (258)
T ss_pred CCCCccEEEEccChh----hCC-CHH---HHHHHHHHhcCCCcEEE
Confidence 246899999864211 122 111 11122334799999754
No 324
>PTZ00146 fibrillarin; Provisional
Probab=97.44 E-value=0.00044 Score=71.92 Aligned_cols=114 Identities=9% Similarity=0.011 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhc---CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhH-HHHHHHHhccCCcccccEEEee
Q 044245 391 LSMVMAMRNALQ---GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKG-AQYLRTVADPNCFSIDRVEILQ 464 (694)
Q Consensus 391 ~~y~~Ai~~~~~---~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~-~~~~~~i~~~N~l~~~~i~vi~ 464 (694)
+...+||..-+. ..++..|||+||| |.++..+|+. |...+|||||. ++.+ +.++ +.++. . .+|+.|.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~--s~r~~~dLl-~~ak~---r-~NI~~I~ 187 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEF--SHRSGRDLT-NMAKK---R-PNIVPII 187 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEEC--cHHHHHHHH-HHhhh---c-CCCEEEE
Confidence 345556643322 3467899999999 8777777765 33468999998 4432 2222 22221 1 3456666
Q ss_pred cccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 465 KGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 465 ~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.+.-..-....+.+|+|++... .+|+.- . +... ..++|||+|.++
T Consensus 188 ~Da~~p~~y~~~~~~vDvV~~Dva-------~pdq~~-i-l~~n-a~r~LKpGG~~v 234 (293)
T PTZ00146 188 EDARYPQKYRMLVPMVDVIFADVA-------QPDQAR-I-VALN-AQYFLKNGGHFI 234 (293)
T ss_pred CCccChhhhhcccCCCCEEEEeCC-------CcchHH-H-HHHH-HHHhccCCCEEE
Confidence 554321100111357999988751 243321 1 2222 235799999654
No 325
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.43 E-value=0.00085 Score=69.75 Aligned_cols=86 Identities=8% Similarity=0.031 Sum_probs=61.9
Q ss_pred CCCCCcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..++..|||+|+| |-.++.+|+ .+...+|+|+|. ++...+.+++.++.+|+. +|+++..+.+.+.. ..+++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~--~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~---~~~~f 141 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEF--SKSRTKVLIANINRCGVL--NVAVTNFDGRVFGA---AVPKF 141 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcC--CHHHHHHHHHHHHHcCCC--cEEEecCCHHHhhh---hccCC
Confidence 3467899999999 777766655 433458999999 666667788899999985 69999887665432 12469
Q ss_pred cEEEccccccCCcccc
Q 044245 481 DLLIGEPYYFGNDGML 496 (694)
Q Consensus 481 DvivsE~~~~~~e~~l 496 (694)
|.|+..+=+.+ .|++
T Consensus 142 D~Vl~D~Pcsg-~G~~ 156 (264)
T TIGR00446 142 DAILLDAPCSG-EGVI 156 (264)
T ss_pred CEEEEcCCCCC-Cccc
Confidence 99999854443 3544
No 326
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.40 E-value=0.00016 Score=71.47 Aligned_cols=103 Identities=18% Similarity=0.150 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..++||.|||-|..+.-+...-. .+|-.+|.++..++.|++.+... .....++++.-.+++... +
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f-----------~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~---~ 120 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF-----------DEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE---E 120 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC------------SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-------T
T ss_pred cceEEecccccchhHHHHHHHhc-----------CEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC---C
Confidence 47899999999999875433322 59999999999999999766542 223466777777777532 3
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+||+|.+.|.-.+|-.++.+..+... +..|+|+|.|+
T Consensus 121 ~~YDlIW~QW~lghLTD~dlv~fL~RC-k~~L~~~G~Iv 158 (218)
T PF05891_consen 121 GKYDLIWIQWCLGHLTDEDLVAFLKRC-KQALKPNGVIV 158 (218)
T ss_dssp T-EEEEEEES-GGGS-HHHHHHHHHHH-HHHEEEEEEEE
T ss_pred CcEeEEEehHhhccCCHHHHHHHHHHH-HHhCcCCcEEE
Confidence 689999999876666555555555554 45889999876
No 327
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.40 E-value=0.00099 Score=72.96 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=63.6
Q ss_pred HHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCC
Q 044245 399 NALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQ 477 (694)
Q Consensus 399 ~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~ 477 (694)
+.....++..||||||| |.++..+|+..| .+|++++. ++.+.+.+++.++ ++ .+++......++ .
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDl--S~~~l~~A~~~~~--~l---~v~~~~~D~~~l------~ 226 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTI--SAEQQKLAQERCA--GL---PVEIRLQDYRDL------N 226 (383)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeC--CHHHHHHHHHHhc--cC---eEEEEECchhhc------C
Confidence 33334567899999999 988888887643 48999999 6666666666553 33 366665544332 2
Q ss_pred ccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 478 KKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 478 ~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.|.|+|-.++.. +-. .++.- +. ....+.|||||.++
T Consensus 227 ~~fD~Ivs~~~~eh---vg~-~~~~~-~l-~~i~r~LkpGG~lv 264 (383)
T PRK11705 227 GQFDRIVSVGMFEH---VGP-KNYRT-YF-EVVRRCLKPDGLFL 264 (383)
T ss_pred CCCCEEEEeCchhh---CCh-HHHHH-HH-HHHHHHcCCCcEEE
Confidence 57999998653321 111 11110 11 22345799999765
No 328
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.40 E-value=0.00073 Score=70.02 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.|.+.....++..|||||+| |.|+...++.+ .+|+++|. ++.+.+.+++.++. . ++|+++.++..++..
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEi--d~~~~~~l~~~~~~--~--~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA--KKVYAIEL--DPRLAEFLRDDEIA--A--GNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEEC--CHHHHHHHHHHhcc--C--CCEEEEEeccccCCc
Confidence 3344444444567899999999 99999999984 58999999 55555566655543 2 589999998766543
Q ss_pred cccCCccccEEEcc-cccc
Q 044245 473 DDTQQKKVDLLIGE-PYYF 490 (694)
Q Consensus 473 ~~l~~~~vDvivsE-~~~~ 490 (694)
...|.|||. ||+-
T Consensus 90 -----~~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 -----PEFNKVVSNLPYQI 103 (258)
T ss_pred -----hhceEEEEcCCccc
Confidence 346999999 5654
No 329
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.39 E-value=0.00085 Score=67.21 Aligned_cols=69 Identities=10% Similarity=-0.012 Sum_probs=49.5
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-----cccC
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-----DDTQ 476 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-----~~l~ 476 (694)
.++..|||+||| |.++..+++..+ ..+|+++|. +++ +++. .|++++++.++.+. ..+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi--~~~-----------~~~~--~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDI--LPM-----------DPIV--GVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEec--ccc-----------cCCC--CcEEEecCCCChHHHHHHHHHhC
Confidence 467789999999 888877766532 369999999 552 2343 48899998776531 1234
Q ss_pred CccccEEEccc
Q 044245 477 QKKVDLLIGEP 487 (694)
Q Consensus 477 ~~~vDvivsE~ 487 (694)
.+++|+|+|.+
T Consensus 115 ~~~~D~V~S~~ 125 (209)
T PRK11188 115 DSKVQVVMSDM 125 (209)
T ss_pred CCCCCEEecCC
Confidence 57899999974
No 330
>PRK08317 hypothetical protein; Provisional
Probab=97.39 E-value=0.0015 Score=66.30 Aligned_cols=116 Identities=9% Similarity=-0.042 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
...|++.+.+.....++..|||+||| |.++...|+. |...+|++++. ++.....+++... ... .+++++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~--~~~~~~~a~~~~~--~~~-~~~~~~~~d~ 78 (241)
T PRK08317 4 FRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDR--SEAMLALAKERAA--GLG-PNVEFVRGDA 78 (241)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeC--CHHHHHHHHHHhh--CCC-CceEEEeccc
Confidence 34567667676666677899999999 8777666664 22468999999 5554445554311 222 5788888765
Q ss_pred ccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 468 KCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+++. +...++|+|++-..+. .+-.+..+ + ..+.+.|+|||.++
T Consensus 79 ~~~~---~~~~~~D~v~~~~~~~---~~~~~~~~---l--~~~~~~L~~gG~l~ 121 (241)
T PRK08317 79 DGLP---FPDGSFDAVRSDRVLQ---HLEDPARA---L--AEIARVLRPGGRVV 121 (241)
T ss_pred ccCC---CCCCCceEEEEechhh---ccCCHHHH---H--HHHHHHhcCCcEEE
Confidence 5443 2346899999864222 12222211 1 12234799999765
No 331
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.36 E-value=0.00086 Score=68.60 Aligned_cols=105 Identities=13% Similarity=0.034 Sum_probs=66.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcC--CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLS--KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g--~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
++..|||+||| |.++..+++.. ...+|+++|. ++.+.+.|++.++..+.. .+++++.+..+++.. .+.|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~--s~~ml~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-----~~~d 124 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDN--SQPMVERCRQHIAAYHSE-IPVEILCNDIRHVEI-----KNAS 124 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeC--CHHHHHHHHHHHHhcCCC-CCeEEEECChhhCCC-----CCCC
Confidence 56789999999 88877777641 1368999999 666666777777766665 689999987665542 3578
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
+|++-.. + ..++.+... -.-..+.+.|+|||.++=.
T Consensus 125 ~v~~~~~-l---~~~~~~~~~--~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 125 MVILNFT-L---QFLPPEDRI--ALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred EEeeecc-h---hhCCHHHHH--HHHHHHHHhcCCCeEEEEe
Confidence 8876421 1 122211110 1112223469999977644
No 332
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0011 Score=66.00 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=73.0
Q ss_pred HHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 56 YRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 56 y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
...|++.. ..++.+|||||+-||.++..+.+.|| .+|||+|..-..+..- .+ + ..||.+++
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-----------k~VyavDVG~~Ql~~k---LR-~--d~rV~~~E 129 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-----------KHVYAVDVGYGQLHWK---LR-N--DPRVIVLE 129 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-----------cEEEEEEccCCccCHh---Hh-c--CCcEEEEe
Confidence 34555542 34689999999999999999999998 7999999865443321 11 1 23676665
Q ss_pred cc-ccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 134 KR-SDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 134 ~~-~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.. .+.+.. .++.++.|+++++.-. . .+..++.++..+++|++.++
T Consensus 130 ~tN~r~l~~-~~~~~~~d~~v~DvSF--I----SL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 130 RTNVRYLTP-EDFTEKPDLIVIDVSF--I----SLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred cCChhhCCH-HHcccCCCeEEEEeeh--h----hHHHHHHHHHHhcCCCceEE
Confidence 54 555543 3455689999997522 1 24556667777888988765
No 333
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.34 E-value=0.0011 Score=66.92 Aligned_cols=73 Identities=18% Similarity=0.076 Sum_probs=56.6
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
.++++.|||+||| |.++..+++.+ .+|+++|. ++.+...+++.+..++.. ++++++.+..+++. ++.|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~--s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~------~~fD 121 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDI--SEQMVQMARNRAQGRDVA-GNVEFEVNDLLSLC------GEFD 121 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEEC--CHHHHHHHHHHHHhcCCC-CceEEEECChhhCC------CCcC
Confidence 4567899999999 98888888874 48999999 676667777777777776 68999887655432 6789
Q ss_pred EEEcc
Q 044245 482 LLIGE 486 (694)
Q Consensus 482 vivsE 486 (694)
+|++-
T Consensus 122 ~ii~~ 126 (219)
T TIGR02021 122 IVVCM 126 (219)
T ss_pred EEEEh
Confidence 99874
No 334
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.33 E-value=0.0011 Score=68.61 Aligned_cols=102 Identities=13% Similarity=0.014 Sum_probs=60.8
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+.+.+...++..||||||| |.++...++...-.+|+++|. ++.+.+.++ .+ .++++.++.+++.
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~--s~~~~~~a~----~~-----~~~~~~~d~~~~~---- 85 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDS--SPEMVAAAR----ER-----GVDARTGDVRDWK---- 85 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHH----hc-----CCcEEEcChhhCC----
Confidence 3344444467899999999 888777766521258999999 665544443 22 3567777666542
Q ss_pred CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 476 QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 476 ~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+..+.|+|++-..+. .++ +.-. ..+ ++.+.|||||.++
T Consensus 86 ~~~~fD~v~~~~~l~----~~~-d~~~--~l~-~~~~~LkpgG~l~ 123 (255)
T PRK14103 86 PKPDTDVVVSNAALQ----WVP-EHAD--LLV-RWVDELAPGSWIA 123 (255)
T ss_pred CCCCceEEEEehhhh----hCC-CHHH--HHH-HHHHhCCCCcEEE
Confidence 236799999964221 122 1111 111 1234699999653
No 335
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.32 E-value=0.00026 Score=68.10 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=61.7
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
|..+...-.||.|||+|+| |+-+..||++| |+.|++.+- .+...+.++-++++||.+ |.+++.+.- -
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~--~P~~~~ai~lNa~angv~---i~~~~~d~~---g--- 138 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADI--DPWLEQAIRLNAAANGVS---ILFTHADLI---G--- 138 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCC--ChHHHHHhhcchhhccce---eEEeecccc---C---
Confidence 4445555578999999999 99999999997 999999877 455555678889999975 777765321 1
Q ss_pred CCccccEEEc-ccccc
Q 044245 476 QQKKVDLLIG-EPYYF 490 (694)
Q Consensus 476 ~~~~vDvivs-E~~~~ 490 (694)
++.++|+|+. ..||.
T Consensus 139 ~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 139 SPPAFDLLLAGDLFYN 154 (218)
T ss_pred CCcceeEEEeeceecC
Confidence 3578997765 56665
No 336
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.30 E-value=0.0015 Score=66.02 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=64.8
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEee
Q 044245 386 DGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQ 464 (694)
Q Consensus 386 D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~ 464 (694)
|..|.+..++.+..+....++..|||+|+| |.++..+++.| + +|+++|. ++.+...+++.+..++. .+++++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~-~-~v~~iD~--s~~~~~~a~~~~~~~~~--~~~~~~~ 99 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG-A-NVTGIDA--SEENIEVAKLHAKKDPL--LKIEYRC 99 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC-C-eEEEEeC--CHHHHHHHHHHHHHcCC--CceEEEe
Confidence 566777777777765323457789999999 88888888875 4 5999999 66555566666666665 2577777
Q ss_pred cccccccccccCCccccEEEcc
Q 044245 465 KGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 465 ~~~~~~~~~~l~~~~vDvivsE 486 (694)
+..+++.... +.+.|+|++-
T Consensus 100 ~d~~~~~~~~--~~~~D~i~~~ 119 (224)
T TIGR01983 100 TSVEDLAEKG--AKSFDVVTCM 119 (224)
T ss_pred CCHHHhhcCC--CCCccEEEeh
Confidence 7655543221 3689999885
No 337
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.29 E-value=0.0011 Score=74.03 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=63.4
Q ss_pred CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc-cCCcc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD-TQQKK 479 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~-l~~~~ 479 (694)
..+|..|||+|+| |..++..|+. ++..+|+|+|. ++...+.+++.++.+|+. +|+++.++.+++.... ...++
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~--~~~rl~~~~~n~~r~g~~--~v~~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDR--SASRLKKLQENAQRLGLK--SIKILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcC--CHHHHHHHHHHHHHcCCC--eEEEEeCChhhccccccccccc
Confidence 3467899999999 7777766664 43569999999 555556778889999995 5999988776553110 11357
Q ss_pred ccEEEccccccCCcccc
Q 044245 480 VDLLIGEPYYFGNDGML 496 (694)
Q Consensus 480 vDvivsE~~~~~~e~~l 496 (694)
+|.|+..+-+.+ .|++
T Consensus 326 fD~Vl~DaPCSg-~G~~ 341 (434)
T PRK14901 326 FDRILLDAPCSG-LGTL 341 (434)
T ss_pred CCEEEEeCCCCc-cccc
Confidence 999999865554 3554
No 338
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.28 E-value=0.0016 Score=72.65 Aligned_cols=81 Identities=10% Similarity=-0.039 Sum_probs=59.8
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+|+| |.+++.+++.++..+|+++|. ++.+.+.+++.++.+|+. ++++.++..++.. .+..++.|.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~--s~~~l~~~~~n~~~~g~~---~~~~~~D~~~~~~-~~~~~~fD~ 316 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDI--DAQRLERVRENLQRLGLK---ATVIVGDARDPAQ-WWDGQPFDR 316 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeC--CHHHHHHHHHHHHHcCCC---eEEEEcCcccchh-hcccCCCCE
Confidence 467889999999 888888887643369999999 666666788889999984 6788877654421 112357999
Q ss_pred EEcccccc
Q 044245 483 LIGEPYYF 490 (694)
Q Consensus 483 ivsE~~~~ 490 (694)
|++.+=|.
T Consensus 317 Vl~D~Pcs 324 (427)
T PRK10901 317 ILLDAPCS 324 (427)
T ss_pred EEECCCCC
Confidence 99985333
No 339
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.27 E-value=0.0014 Score=73.12 Aligned_cols=119 Identities=10% Similarity=0.028 Sum_probs=75.8
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
..+|..|||+|+| |..++.+|+..+..+|+|+|. ++...+.+++.++.+|+. .+++++.+...+.... ...+++|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~--~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~-~~~~~fD 311 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDI--HEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQW-AENEQFD 311 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHHHHHcCCC-eEEEEecccccccccc-ccccccC
Confidence 3467899999999 878777777533579999999 665556778889999986 5666677654332210 1246799
Q ss_pred EEEccccccCCccccC------cc----hh------hHHHHHhhcccccCCCceEEcceEEE
Q 044245 482 LLIGEPYYFGNDGMLP------WQ----NL------RFWKERSKLDPVLSKEVIIMPFKGIL 527 (694)
Q Consensus 482 vivsE~~~~~~e~~l~------w~----~l------~f~~~r~~~~~~L~p~g~i~P~~a~l 527 (694)
.|+..+-|.+ +|++. |. .+ ..-..+++ .++|||||.++=+.|++
T Consensus 312 ~VllDaPcSg-~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a-~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 312 RILLDAPCSA-TGVIRRHPDIKWLRKPRDIAELAELQSEILDAI-WPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEEEcCCCCC-CcccccCcchhhcCCHHHHHHHHHHHHHHHHHH-HHhcCCCcEEEEEeCCC
Confidence 9999965554 35542 10 00 01122222 24799999887444443
No 340
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.26 E-value=0.0016 Score=68.67 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=63.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+||||||++|.++..+.+.|+ +|+|||.. .|... +.. ..+|+.+.++.......
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~------------~V~AVD~g-~l~~~----L~~---~~~V~h~~~d~fr~~p~- 267 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM------------FVTAVDNG-PMAQS----LMD---TGQVEHLRADGFKFRPP- 267 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC------------EEEEEech-hcCHh----hhC---CCCEEEEeccCcccCCC-
Confidence 35689999999999999999999985 99999964 34322 222 24788888887665421
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCC
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN 181 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~ 181 (694)
.+++|++||++... ...+.+...++|..|
T Consensus 268 --~~~vDwvVcDmve~-------P~rva~lm~~Wl~~g 296 (357)
T PRK11760 268 --RKNVDWLVCDMVEK-------PARVAELMAQWLVNG 296 (357)
T ss_pred --CCCCCEEEEecccC-------HHHHHHHHHHHHhcC
Confidence 46899999986542 445556666677665
No 341
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.26 E-value=0.00077 Score=63.98 Aligned_cols=108 Identities=15% Similarity=0.097 Sum_probs=73.0
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE 486 (694)
.|||+||| |.|=.-.|+-|=..+.+.++= ++.|.++|+.++++++++ |.|++-+. +|+.++.-..+.|+|+--
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDY--s~~AV~LA~niAe~~~~~-n~I~f~q~---DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDY--SEKAVELAQNIAERDGFS-NEIRFQQL---DITDPDFLSGQFDLVLDK 143 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCcccccc--CHHHHHHHHHHHHhcCCC-cceeEEEe---eccCCcccccceeEEeec
Confidence 79999999 888777778753455777877 788888999999999998 88998776 455544446789999876
Q ss_pred c-ccc-CCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 487 P-YYF-GNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 487 ~-~~~-~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
+ |.. ++.++.+-.-+. ..-+..+++|+|||+.+=.
T Consensus 144 GT~DAisLs~d~~~~r~~--~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLV--VYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred CceeeeecCCCCccccee--eehhhHhhccCCCcEEEEE
Confidence 4 221 112333311110 1113345689999976533
No 342
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.25 E-value=0.0011 Score=69.28 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=73.1
Q ss_pred CEEEEEcCCCC----HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH------------------H---
Q 044245 68 CHVLDIGAGTG----LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH------------------V--- 122 (694)
Q Consensus 68 ~~VLDiG~GtG----~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~------------------~--- 122 (694)
-+|+..||+|| .++|.+...++.. ....+|+|.|+|+.+++.|++-+- .
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~------~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~ 190 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTA------PGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTG 190 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhccc------CCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccC
Confidence 68999999999 7788877764310 013689999999999999987520 0
Q ss_pred --cC-------CCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 123 --NG-------MGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 123 --ng-------l~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
.| +...|++...+..+.+.+ ..++||+|+|.-+-.+ +.+.....+...+.+.|+|||.++-..
T Consensus 191 ~~~~~~~v~~~lr~~V~F~~~NL~~~~~~--~~~~fD~I~cRNvliy-F~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 191 PHEGLVRVRQELANYVDFQQLNLLAKQWA--VPGPFDAIFCRNVMIY-FDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CCCceEEEChHHHccCEEEcccCCCCCCc--cCCCcceeeHhhHHhc-CCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01 224566666665542211 1368999999422111 123345567777788999999987554
No 343
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.23 E-value=0.0025 Score=67.73 Aligned_cols=83 Identities=6% Similarity=-0.084 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
...+.+.....++..|||||+| |.++..+++....-+|+.++. .++ .+.+++.++..|++ ++|+++.++..+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~--~~~-~~~a~~~~~~~gl~-~rv~~~~~d~~~~-- 211 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL--PGA-IDLVNENAAEKGVA-DRMRGIAVDIYKE-- 211 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec--HHH-HHHHHHHHHhCCcc-ceEEEEecCccCC--
Confidence 3445555544456799999999 988888887742357888876 343 45678888888998 8999999865432
Q ss_pred cccCCccccEEEc
Q 044245 473 DDTQQKKVDLLIG 485 (694)
Q Consensus 473 ~~l~~~~vDvivs 485 (694)
.++ ..|+++.
T Consensus 212 -~~~--~~D~v~~ 221 (306)
T TIGR02716 212 -SYP--EADAVLF 221 (306)
T ss_pred -CCC--CCCEEEe
Confidence 232 3587654
No 344
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.23 E-value=0.00042 Score=70.64 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=85.5
Q ss_pred cccCCCCCccceeEeccCCCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHH-HHHHH
Q 044245 9 LKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSM-MAARA 87 (694)
Q Consensus 9 ~~~~~~~g~~~w~~~~~~~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl-~aa~~ 87 (694)
..+.|..|+..|....++ .. .+ .+ ..-..|.....-.+ ..-+......+..|.|+-+|-|.+++ .+.++
T Consensus 147 ~~v~~L~Gd~gWV~~v~N-GI-----~~-~~-d~t~~MFS~GN~~E--K~Rv~~~sc~~eviVDLYAGIGYFTlpflV~a 216 (351)
T KOG1227|consen 147 PNVQPLYGDLGWVKHVQN-GI-----TQ-IW-DPTKTMFSRGNIKE--KKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTA 216 (351)
T ss_pred Cccccccccccceeehhc-Ce-----EE-Ee-chhhhhhhcCcHHH--HHHhhhcccccchhhhhhcccceEEeehhhcc
Confidence 356788899999987765 10 00 00 11223443332112 12233333456899999999999999 88899
Q ss_pred cCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEE
Q 044245 88 MGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVS 154 (694)
Q Consensus 88 g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvs 154 (694)
|| ..|+|+|.||..++..+++++.|+..++..+++++.+...+ ...+|-|..
T Consensus 217 gA-----------k~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~----~~~AdrVnL 268 (351)
T KOG1227|consen 217 GA-----------KTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP----RLRADRVNL 268 (351)
T ss_pred Cc-----------cEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc----cccchheee
Confidence 87 78999999999999999999999999999999999877543 246777664
No 345
>PRK01581 speE spermidine synthase; Validated
Probab=97.22 E-value=0.002 Score=68.97 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=71.5
Q ss_pred HHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHH---h--ccCCcccccEEEee
Q 044245 393 MVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTV---A--DPNCFSIDRVEILQ 464 (694)
Q Consensus 393 y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i---~--~~N~l~~~~i~vi~ 464 (694)
|+.+|.... .....+.||+||+| |.....+.+..+..+|++||- .+...++|++. . ....+...|++++.
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEI--DpeVIelAr~~~~L~~~~~~~~~DpRV~vvi 213 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDL--DGSMINMARNVPELVSLNKSAFFDNRVNVHV 213 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHhccccchhccccCCCCceEEEE
Confidence 555555432 11234689999999 877777888755789999999 56555666641 1 12234337999988
Q ss_pred cccccccccccCCccccEEEccccccCCccccCcchhh---HHHHHhhcccccCCCceEE
Q 044245 465 KGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLR---FWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 465 ~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~---f~~~r~~~~~~L~p~g~i~ 521 (694)
++..+.-. . ..++.|+||.....-. +-.. ..|+ |+- ...+.|+|||+++
T Consensus 214 ~Da~~fL~-~-~~~~YDVIIvDl~DP~--~~~~-~~LyT~EFy~---~~~~~LkPgGV~V 265 (374)
T PRK01581 214 CDAKEFLS-S-PSSLYDVIIIDFPDPA--TELL-STLYTSELFA---RIATFLTEDGAFV 265 (374)
T ss_pred CcHHHHHH-h-cCCCccEEEEcCCCcc--ccch-hhhhHHHHHH---HHHHhcCCCcEEE
Confidence 76654321 1 2467999999853321 1111 2231 211 1234699999863
No 346
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.21 E-value=0.00057 Score=68.05 Aligned_cols=90 Identities=8% Similarity=0.102 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
...+-+.+.+.. +.+.||+||++ |.-++..|++ +.-.+|+++|. .+...++|++.++..|++ ++|+++.+..
T Consensus 33 ~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~--~~~~~~~A~~~~~~ag~~-~~I~~~~gda 106 (205)
T PF01596_consen 33 TGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEI--DPERAEIARENFRKAGLD-DRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEES--SHHHHHHHHHHHHHTTGG-GGEEEEES-H
T ss_pred HHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecC--cHHHHHHHHHHHHhcCCC-CcEEEEEecc
Confidence 334444555444 45689999999 8888888875 11258999999 676667899999999998 9999999977
Q ss_pred cccccccc----CCccccEEEcc
Q 044245 468 KCLTMDDT----QQKKVDLLIGE 486 (694)
Q Consensus 468 ~~~~~~~l----~~~~vDvivsE 486 (694)
.++-. .| +..+.|.|.-.
T Consensus 107 ~~~l~-~l~~~~~~~~fD~VFiD 128 (205)
T PF01596_consen 107 LEVLP-ELANDGEEGQFDFVFID 128 (205)
T ss_dssp HHHHH-HHHHTTTTTSEEEEEEE
T ss_pred HhhHH-HHHhccCCCceeEEEEc
Confidence 54321 11 12468988775
No 347
>PLN02672 methionine S-methyltransferase
Probab=97.21 E-value=0.0011 Score=80.29 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=61.1
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc--------------cccEEEeecccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS--------------IDRVEILQKGKK 468 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~--------------~~~i~vi~~~~~ 468 (694)
++++.|||+||| |.+++.+|+.....+|+++|- ++.|.++|+++++.|+++ .++|++++++..
T Consensus 117 ~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDi--s~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~ 194 (1082)
T PLN02672 117 FRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDI--NPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL 194 (1082)
T ss_pred CCCCEEEEEecchHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh
Confidence 346789999999 999999888754579999999 888889999999988652 158999998653
Q ss_pred cccccccCCccccEEEccc
Q 044245 469 CLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~ 487 (694)
+.-. .. ..++|+|||-|
T Consensus 195 ~~~~-~~-~~~fDlIVSNP 211 (1082)
T PLN02672 195 GYCR-DN-NIELDRIVGCI 211 (1082)
T ss_pred hhcc-cc-CCceEEEEECC
Confidence 2211 11 13699999974
No 348
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.19 E-value=0.0013 Score=56.19 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=64.5
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE 486 (694)
.++|+|+| |.++..+++.+ ..+++++|. ++.+...+++..+.++. .+++++.+...+... ....++|+|++-
T Consensus 1 ~ildig~G~G~~~~~~~~~~-~~~~~~~d~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALASGP-GARVTGVDI--SPVALELARKAAAALLA--DNVEVLKGDAEELPP--EADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC-CCEEEEEeC--CHHHHHHHHHHHhcccc--cceEEEEcChhhhcc--ccCCceEEEEEc
Confidence 37999999 87777777754 789999999 66655555544444443 579999887665543 124689999998
Q ss_pred ccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 487 PYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 487 ~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
..+... + +...- +.+. +.+.|+|+|.++-.
T Consensus 74 ~~~~~~----~-~~~~~-~l~~-~~~~l~~~g~~~~~ 103 (107)
T cd02440 74 PPLHHL----V-EDLAR-FLEE-ARRLLKPGGVLVLT 103 (107)
T ss_pred cceeeh----h-hHHHH-HHHH-HHHHcCCCCEEEEE
Confidence 643310 1 11100 1111 12358999988754
No 349
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.19 E-value=0.0023 Score=65.12 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=66.9
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.......+++.|||||+| |.++...++.| .+|+++|. ++.+.+.+++.+..+++ .++++....+++...
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~--s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~- 110 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARLG--ADVTGIDA--SEENIEVARLHALESGL---KIDYRQTTAEELAAE- 110 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcC--CHHHHHHHHHHHHHcCC---ceEEEecCHHHhhhh-
Confidence 34444445567899999999 88888888875 46999999 55555566665555555 367776655544321
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
..++.|+|++-..+. .+-. .-. . -....++|+|||.++
T Consensus 111 -~~~~fD~Ii~~~~l~---~~~~--~~~--~-l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 111 -HPGQFDVVTCMEMLE---HVPD--PAS--F-VRACAKLVKPGGLVF 148 (233)
T ss_pred -cCCCccEEEEhhHhh---ccCC--HHH--H-HHHHHHHcCCCcEEE
Confidence 246899998853111 1111 111 1 112234699999776
No 350
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.18 E-value=0.0016 Score=69.82 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=61.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..||||||| |.+++..++.-+..+|+++|. ++.+.+.+++... . .+++++.+..+++.. +.+..|+|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~--S~~mL~~A~~k~~---~--~~i~~i~gD~e~lp~---~~~sFDvV 182 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQ--SPHQLAKAKQKEP---L--KECKIIEGDAEDLPF---PTDYADRY 182 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHhhh---c--cCCeEEeccHHhCCC---CCCceeEE
Confidence 45689999999 888777666422578999999 5554445544332 1 467888887765543 34679999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+-.... .++ +.-. .. ....+.|+|||.++
T Consensus 183 Is~~~L~----~~~-d~~~--~L-~e~~rvLkPGG~Lv 212 (340)
T PLN02490 183 VSAGSIE----YWP-DPQR--GI-KEAYRVLKIGGKAC 212 (340)
T ss_pred EEcChhh----hCC-CHHH--HH-HHHHHhcCCCcEEE
Confidence 9853111 111 1111 11 12234799999863
No 351
>PLN03075 nicotianamine synthase; Provisional
Probab=97.18 E-value=0.0026 Score=66.42 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=68.0
Q ss_pred CCCcEEEecCC-c-hHHHHHH-HcCCCceEEEcCCCcChhHHHHHHHHhcc-CCcccccEEEeecccccccccccCCccc
Q 044245 405 VQPLCVVADDS-V-FLTICVA-RLSKTAHVLSLLPGLGDKGAQYLRTVADP-NCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-g-iLsl~aA-~~g~a~~V~ave~~~~~~~~~~~~~i~~~-N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
+.+.|++||+| | +-+++.+ ++....+|+.+|. ++.+.+.|++.+++ .|+. ++|++..++..++.. . .++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~--d~~ai~~Ar~~~~~~~gL~-~rV~F~~~Da~~~~~-~--l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDI--DPSANDVARRLVSSDPDLS-KRMFFHTADVMDVTE-S--LKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeC--CHHHHHHHHHHhhhccCcc-CCcEEEECchhhccc-c--cCCc
Confidence 56889999999 4 5555444 4544568999999 77777888998854 8897 899999987655421 1 2679
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
|+|.+-- +. .|-...-- -.-+.+.+.|+|||.++=
T Consensus 197 DlVF~~A--Li--~~dk~~k~---~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 197 DVVFLAA--LV--GMDKEEKV---KVIEHLGKHMAPGALLML 231 (296)
T ss_pred CEEEEec--cc--ccccccHH---HHHHHHHHhcCCCcEEEE
Confidence 9998762 11 12110111 111122346999997763
No 352
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.17 E-value=0.0023 Score=71.68 Aligned_cols=81 Identities=9% Similarity=0.074 Sum_probs=60.3
Q ss_pred CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..++..|||+|+| |-.++.+|+. ++..+|+|+|. ++...+.+++.++.+|+. +|+++.++..++. +.+.+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~--s~~~l~~~~~~~~~~g~~--~v~~~~~Da~~~~----~~~~f 319 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDR--YPQKLEKIRSHASALGIT--IIETIEGDARSFS----PEEQP 319 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEEC--CHHHHHHHHHHHHHhCCC--eEEEEeCcccccc----cCCCC
Confidence 3467899999999 8777666653 33469999999 666666788889999984 6999988766542 23579
Q ss_pred cEEEccccccC
Q 044245 481 DLLIGEPYYFG 491 (694)
Q Consensus 481 DvivsE~~~~~ 491 (694)
|.|+..+-+.+
T Consensus 320 D~Vl~D~Pcsg 330 (445)
T PRK14904 320 DAILLDAPCTG 330 (445)
T ss_pred CEEEEcCCCCC
Confidence 99998754444
No 353
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.16 E-value=0.0014 Score=68.53 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=57.3
Q ss_pred HHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC
Q 044245 398 RNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ 476 (694)
Q Consensus 398 ~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~ 476 (694)
.+.....++..|||+|+| |.++..+++.+ + +|+++|. ++.+.+.+++... . +++++++++..++..+++
T Consensus 35 ~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~-~v~avE~--d~~~~~~~~~~~~----~-~~v~~i~~D~~~~~~~~~- 104 (272)
T PRK00274 35 VDAAGPQPGDNVLEIGPGLGALTEPLLERA-A-KVTAVEI--DRDLAPILAETFA----E-DNLTIIEGDALKVDLSEL- 104 (272)
T ss_pred HHhcCCCCcCeEEEeCCCccHHHHHHHHhC-C-cEEEEEC--CHHHHHHHHHhhc----c-CceEEEEChhhcCCHHHc-
Confidence 333344467789999999 99999999985 4 9999999 5555555544332 2 579999998877654322
Q ss_pred CccccEEEcc-cccc
Q 044245 477 QKKVDLLIGE-PYYF 490 (694)
Q Consensus 477 ~~~vDvivsE-~~~~ 490 (694)
..|.||+. ||+.
T Consensus 105 --~~~~vv~NlPY~i 117 (272)
T PRK00274 105 --QPLKVVANLPYNI 117 (272)
T ss_pred --CcceEEEeCCccc
Confidence 15899998 5655
No 354
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.16 E-value=8.6e-05 Score=65.71 Aligned_cols=103 Identities=15% Similarity=0.241 Sum_probs=40.0
Q ss_pred EEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC-CCc
Q 044245 71 LDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID-SRA 149 (694)
Q Consensus 71 LDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~-~~~ 149 (694)
||||+..|..++.++++.... ...+++++|..+. .+.+++.++..++.++++++++++.+.-. .++ +++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~-------~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~--~~~~~~~ 70 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN-------GRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLP--SLPDGPI 70 (106)
T ss_dssp ---------------------------------EEEESS-------------GGG-BTEEEEES-THHHHH--HHHH--E
T ss_pred Ccccccccccccccccccccc-------ccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHH--HcCCCCE
Confidence 689999998888877765411 0137999999885 44555666667888899999999977531 222 689
Q ss_pred cEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 150 DILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 150 DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
|+++.+. ...++.....+.. ....|+|||+++-+
T Consensus 71 dli~iDg---~H~~~~~~~dl~~-~~~~l~~ggviv~d 104 (106)
T PF13578_consen 71 DLIFIDG---DHSYEAVLRDLEN-ALPRLAPGGVIVFD 104 (106)
T ss_dssp EEEEEES------HHHHHHHHHH-HGGGEEEEEEEEEE
T ss_pred EEEEECC---CCCHHHHHHHHHH-HHHHcCCCeEEEEe
Confidence 9998652 1112223334443 34578999988754
No 355
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.16 E-value=0.00098 Score=72.54 Aligned_cols=101 Identities=13% Similarity=0.036 Sum_probs=69.7
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCccccc
Q 044245 381 IAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDR 459 (694)
Q Consensus 381 i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~ 459 (694)
.-..|-...-.-|..+... ... .+..|||++|| |.+|+.+|+. +++|+++|. ++.+.+.++++++.||+ ++
T Consensus 184 F~Q~N~~~~e~l~~~v~~~-~~~-~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~--~~~ai~~a~~N~~~~~~--~~ 255 (362)
T PRK05031 184 FTQPNAAVNEKMLEWALDA-TKG-SKGDLLELYCGNGNFTLALARN--FRRVLATEI--SKPSVAAAQYNIAANGI--DN 255 (362)
T ss_pred eeccCHHHHHHHHHHHHHH-hhc-CCCeEEEEeccccHHHHHHHhh--CCEEEEEEC--CHHHHHHHHHHHHHhCC--Cc
Confidence 3344444444444444433 222 12469999999 9999988875 689999999 77777889999999999 47
Q ss_pred EEEeecccccccccccC--------------CccccEEEcccccc
Q 044245 460 VEILQKGKKCLTMDDTQ--------------QKKVDLLIGEPYYF 490 (694)
Q Consensus 460 i~vi~~~~~~~~~~~l~--------------~~~vDvivsE~~~~ 490 (694)
++++.+++++.-. .+. ..+.|+||-.|=+.
T Consensus 256 v~~~~~d~~~~l~-~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~ 299 (362)
T PRK05031 256 VQIIRMSAEEFTQ-AMNGVREFNRLKGIDLKSYNFSTIFVDPPRA 299 (362)
T ss_pred EEEEECCHHHHHH-HHhhcccccccccccccCCCCCEEEECCCCC
Confidence 9999998876421 110 12579999996334
No 356
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.13 E-value=0.0018 Score=67.66 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH--H---HcCCC-CcEEEEecccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL--H---VNGMG-RNIKVINKRSDEL 139 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~--~---~ngl~-~~I~vi~~~~~~l 139 (694)
.-.+||-+|.|-|+-...+.|.-. ..+|+-+|.+|.|++.++++. + ++.++ .|++++..|..++
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~----------~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w 358 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQ----------VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW 358 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCC----------cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH
Confidence 347899999999998888877631 369999999999999999443 2 23333 4899999997665
Q ss_pred ccccCCCCCccEEEEcccccccc--CCChHHHHHHHHHhccCCCCeEEcCceEEEEEEe
Q 044245 140 EVGVDIDSRADILVSEILDSELL--GEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLV 196 (694)
Q Consensus 140 ~~~~~l~~~~DlIvse~~~~~l~--~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~v 196 (694)
-.. -.++||.+|-++.+..-. +.-.-..+-...++.|+++|+++-+.+..|-.|-
T Consensus 359 lr~--a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~ 415 (508)
T COG4262 359 LRT--AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR 415 (508)
T ss_pred HHh--hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc
Confidence 421 225899999887653221 1112223445567789999999999988886653
No 357
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.13 E-value=0.0002 Score=69.97 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=45.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc----c
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV----G 142 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~----~ 142 (694)
+.+|||+||++|.++..+.+.+. +..+|+|+|..+. ... ..+..+.+|..+... .
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~---------~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGG---------PAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTT---------TEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGG
T ss_pred ccEEEEcCCcccceeeeeeeccc---------ccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhh
Confidence 48999999999999999999872 1379999999754 122 256666666544321 0
Q ss_pred cCC---CCCccEEEEcc
Q 044245 143 VDI---DSRADILVSEI 156 (694)
Q Consensus 143 ~~l---~~~~DlIvse~ 156 (694)
..+ .+++|+|+|+.
T Consensus 83 ~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDM 99 (181)
T ss_dssp GSHGTTTCSESEEEE--
T ss_pred hhccccccCcceecccc
Confidence 111 25899999986
No 358
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.13 E-value=0.0023 Score=64.43 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=63.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-------------cccEEEeecccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-------------IDRVEILQKGKKCL 470 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-------------~~~i~vi~~~~~~~ 470 (694)
++..|||+||| |-=+++.|+.| -+|+|+|. ++.|.+ +..++|+++ ..+|+++.++..++
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~--s~~Ai~---~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQG--HEVLGVEL--SELAVE---QFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCC--CeEEEEcc--CHHHHH---HHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence 45689999999 98888888886 57999999 776543 334456553 14678887766655
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
....+ .++|.|+-...+. .++ ...+--|. ..+.++|+|||.
T Consensus 110 ~~~~~--~~fd~v~D~~~~~----~l~-~~~R~~~~-~~l~~lL~pgG~ 150 (218)
T PRK13255 110 TAADL--ADVDAVYDRAALI----ALP-EEMRERYV-QQLAALLPAGCR 150 (218)
T ss_pred CcccC--CCeeEEEehHhHh----hCC-HHHHHHHH-HHHHHHcCCCCe
Confidence 43222 3678887765433 344 33321122 123457999985
No 359
>PRK06922 hypothetical protein; Provisional
Probab=97.12 E-value=0.0024 Score=73.03 Aligned_cols=76 Identities=7% Similarity=0.044 Sum_probs=51.3
Q ss_pred CCCcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 405 VQPLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
++..|||+||| |.++...|+ .. -.+|+++|. ++.+.+.+++....++ .++.++.++..++.. .++++.+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDI--S~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~-~fedeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDI--SENVIDTLKKKKQNEG---RSWNVIKGDAINLSS-SFEKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEEC--CHHHHHHHHHHhhhcC---CCeEEEEcchHhCcc-ccCCCCEEE
Confidence 56799999999 876655444 43 479999999 6655556655544444 357888886655421 134578999
Q ss_pred EEccc
Q 044245 483 LIGEP 487 (694)
Q Consensus 483 ivsE~ 487 (694)
|++-+
T Consensus 491 VVsn~ 495 (677)
T PRK06922 491 IVYSS 495 (677)
T ss_pred EEEch
Confidence 99753
No 360
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.11 E-value=0.0015 Score=64.30 Aligned_cols=69 Identities=7% Similarity=0.061 Sum_probs=45.1
Q ss_pred CCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-----cccC
Q 044245 404 RVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-----DDTQ 476 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-----~~l~ 476 (694)
.++..|||+|+| |.++.++++. ++..+|+++|. +++. ++ ..++++.+..++... ..++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDi--s~~~-----------~~--~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDL--QPMK-----------PI--ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEec--cccc-----------cC--CCceEEEeeCCChhHHHHHHHHhC
Confidence 467899999999 7777666554 33568999999 5532 12 346777665544221 0123
Q ss_pred CccccEEEccc
Q 044245 477 QKKVDLLIGEP 487 (694)
Q Consensus 477 ~~~vDvivsE~ 487 (694)
.+++|+|++.+
T Consensus 96 ~~~~D~V~~~~ 106 (188)
T TIGR00438 96 DDKVDVVMSDA 106 (188)
T ss_pred CCCccEEEcCC
Confidence 56799999973
No 361
>PHA01634 hypothetical protein
Probab=97.09 E-value=0.0031 Score=56.33 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=58.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
-++++|+|||++.|.-++.++-+|| .+|+++|.++.+.+..+++++.|.+-|+..-.. ++..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GA-----------K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~-eW~~------ 88 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGA-----------SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG-EWNG------ 88 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCc-----------cEEEEeccCHHHHHHHHHHhhhheeeeceeecc-cccc------
Confidence 3589999999999999999999998 799999999999999999999987765544322 3322
Q ss_pred CCCCccEEEEc
Q 044245 145 IDSRADILVSE 155 (694)
Q Consensus 145 l~~~~DlIvse 155 (694)
.-+.||+.+.+
T Consensus 89 ~Y~~~Di~~iD 99 (156)
T PHA01634 89 EYEDVDIFVMD 99 (156)
T ss_pred cCCCcceEEEE
Confidence 22679988754
No 362
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.09 E-value=0.0011 Score=69.12 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=53.0
Q ss_pred CcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC-CcccccEEEeecccc-ccccc-ccCCcccc
Q 044245 407 PLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN-CFSIDRVEILQKGKK-CLTMD-DTQQKKVD 481 (694)
Q Consensus 407 ~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N-~l~~~~i~vi~~~~~-~~~~~-~l~~~~vD 481 (694)
..+||||+| +|-+|++++.=| =+++|.|- .+.+.+.|+++++.| +|+ ++|+|++.... .|-.. ..+.++.|
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~-W~fvaTdI--D~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYG-WSFVATDI--DPKSLESARENVERNPNLE-SRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH---EEEEEES---HHHHHHHHHHHHHT-T-T-TTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred eEeecCCccHHHHHHHHhhhhcC-CeEEEecC--CHHHHHHHHHHHHhccccc-cceEEEEcCCccccchhhhcccceee
Confidence 468999999 699999999632 68889988 777888999999999 998 99999876433 22111 11347899
Q ss_pred EEEcc-ccccCCccc
Q 044245 482 LLIGE-PYYFGNDGM 495 (694)
Q Consensus 482 vivsE-~~~~~~e~~ 495 (694)
..+|- |||.+.|-+
T Consensus 180 ftmCNPPFy~s~~e~ 194 (299)
T PF05971_consen 180 FTMCNPPFYSSQEEA 194 (299)
T ss_dssp EEEE-----SS----
T ss_pred EEecCCccccChhhh
Confidence 99998 688765433
No 363
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.08 E-value=0.0027 Score=72.72 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc--cc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV--GV 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~--~~ 143 (694)
...+|||.|||+|.+.+.+++....... ...-...++|+|+++.++..|+.++...+. ..+.+++++...... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~--~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINY--FKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCC--cccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccc
Confidence 3568999999999998888876531000 000125799999999999999999877652 235566555432111 01
Q ss_pred CCCCCccEEEEcccccc
Q 044245 144 DIDSRADILVSEILDSE 160 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~ 160 (694)
+..++||+||+||....
T Consensus 108 ~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 108 SYLDLFDIVITNPPYGR 124 (524)
T ss_pred cccCcccEEEeCCCccc
Confidence 12258999999996653
No 364
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0016 Score=64.11 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=66.7
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+.++.+|+|||+-.|.++..+++..++ ..+|+|+|+.| |- .. .+|.++++|+++-+..
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~---------~~~ivavDi~p-~~----------~~-~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGA---------GGKIVAVDILP-MK----------PI-PGVIFLQGDITDEDTL 100 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCC---------CCcEEEEECcc-cc----------cC-CCceEEeeeccCccHH
Confidence 3667899999999999999999998762 35699999853 21 22 2599999998764421
Q ss_pred c----CCC-CCccEEEEccccccccC---CCh-----HHHHHHHHHhccCCCCeEE
Q 044245 143 V----DID-SRADILVSEILDSELLG---EGL-----IPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~----~l~-~~~DlIvse~~~~~l~~---e~~-----l~~l~~~~~~~L~p~G~ii 185 (694)
. .+. .++|+|+|++.-...-. +.. .....+....+|+|||.++
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 1 122 34799999864321100 111 1123334456899999876
No 365
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0015 Score=65.05 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeec-ccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQK-GKK 468 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~-~~~ 468 (694)
....||+...-..+|++|||+|.. |+. -++-+.| |++|||++-+-...+-++ +|+ .||.++++ ++.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFT-d~lLq~g-Ak~VyavDVG~~Ql~~kL------R~d---~rV~~~E~tN~r 134 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFT-DVLLQRG-AKHVYAVDVGYGQLHWKL------RND---PRVIVLERTNVR 134 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHH-HHHHHcC-CcEEEEEEccCCccCHhH------hcC---CcEEEEecCChh
Confidence 456778887777889999999976 555 4555776 999999998532222221 122 57888765 344
Q ss_pred cccccccCCccccEEEccccccC
Q 044245 469 CLTMDDTQQKKVDLLIGEPYYFG 491 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~~~~~ 491 (694)
.++.+++. +++|+++++.-|-+
T Consensus 135 ~l~~~~~~-~~~d~~v~DvSFIS 156 (245)
T COG1189 135 YLTPEDFT-EKPDLIVIDVSFIS 156 (245)
T ss_pred hCCHHHcc-cCCCeEEEEeehhh
Confidence 56666664 58999999974443
No 366
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.07 E-value=0.0042 Score=64.29 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=62.2
Q ss_pred CEEEEEcCCCC-HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH-HcCCCCcEEEEeccccccccccCC
Q 044245 68 CHVLDIGAGTG-LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH-VNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 68 ~~VLDiG~GtG-~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~-~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.+|+=||+|.= +-++.+++... +...|+++|+++.+++.+++.++ ..|++.+++++.+|..+... ++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~---------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~--dl 190 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHG---------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY--DL 190 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HT---------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G--G-
T ss_pred ceEEEEcCCCcchHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc--cc
Confidence 59999999964 44666665432 13589999999999999999988 67888999999999877642 22
Q ss_pred CCCccEEEEccccccccC--CChHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSELLG--EGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~--e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..||+|+.. .+.+ ...-..++..+.+.++||++++-+
T Consensus 191 -~~~DvV~lA----alVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 191 -KEYDVVFLA----ALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ----SEEEE-----TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred -ccCCEEEEh----hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 479988752 2333 112445666666789999988755
No 367
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0086 Score=64.90 Aligned_cols=126 Identities=19% Similarity=0.159 Sum_probs=88.4
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
...+|.+|||+.++.|.=+..+|..... ....|+|+|.++.-++..++++++.|+. ++.+++.|...+...
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~--------~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~ 223 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMEN--------EGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAEL 223 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCC--------CCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccc
Confidence 3567899999999999888888877651 1245799999999999999999999997 588888887655321
Q ss_pred cCCCCCccEEEEccc--cccccCC--C---------------hHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 143 VDIDSRADILVSEIL--DSELLGE--G---------------LIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 143 ~~l~~~~DlIvse~~--~~~l~~e--~---------------~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
....++||.|+.+.. +.+.+.. . ....++...-++|+|||.++=..|++. +-|.+
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~--~eENE 297 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT--PEENE 297 (355)
T ss_pred ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc--hhcCH
Confidence 111136999998753 2223310 0 111355555568999999987777766 55555
No 368
>PLN02366 spermidine synthase
Probab=97.04 E-value=0.0038 Score=66.17 Aligned_cols=127 Identities=12% Similarity=-0.027 Sum_probs=76.7
Q ss_pred HHHHHHHHHhc--CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecc
Q 044245 392 SMVMAMRNALQ--GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~--~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~ 466 (694)
.|++.|.+..- ....+.||+||+| |.++..+++..+..+|..||- .+...+++++.... ++++..|++++.++
T Consensus 76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEi--D~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D 153 (308)
T PLN02366 76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEI--DKMVIDVSKKFFPDLAVGFDDPRVNLHIGD 153 (308)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEEC--CHHHHHHHHHhhhhhccccCCCceEEEECh
Confidence 46666665321 1235789999999 888878888755789999998 55444566664432 34553599999887
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEEcceEEEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIMPFKGILK 528 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~P~~a~l~ 528 (694)
..+.-. ..+.++.|+||+..+.-. +. + ..| .| |. ...+.|+|||+++-.....+
T Consensus 154 a~~~l~-~~~~~~yDvIi~D~~dp~--~~-~-~~L~t~ef-~~--~~~~~L~pgGvlv~q~~s~~ 210 (308)
T PLN02366 154 GVEFLK-NAPEGTYDAIIVDSSDPV--GP-A-QELFEKPF-FE--SVARALRPGGVVCTQAESMW 210 (308)
T ss_pred HHHHHh-hccCCCCCEEEEcCCCCC--Cc-h-hhhhHHHH-HH--HHHHhcCCCcEEEECcCCcc
Confidence 543321 122467999999753321 21 2 222 12 21 12346999999865444333
No 369
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.03 E-value=0.0067 Score=62.57 Aligned_cols=124 Identities=17% Similarity=0.083 Sum_probs=76.9
Q ss_pred hCCHHHHHHHHHHHH---hhcc------CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHH
Q 044245 47 LNDSYRNRAYRLAID---KMVT------KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMK 117 (694)
Q Consensus 47 l~D~~r~~~y~~ai~---~~~~------~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~ 117 (694)
....+|...|...+. +... .+.+||.=|||.|.|+..+|+.|- .+.|.|.|-.|+-..+
T Consensus 28 eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~------------~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 28 EGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY------------AVQGNEFSYFMLLASN 95 (270)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc------------eEEEEEchHHHHHHHH
Confidence 345667777665544 3332 247899999999999999999985 8999999999977665
Q ss_pred HHHHHcCCC---------------------------------------CcEEEEeccccccccccCCCCCccEEEEcccc
Q 044245 118 KVLHVNGMG---------------------------------------RNIKVINKRSDELEVGVDIDSRADILVSEILD 158 (694)
Q Consensus 118 ~~~~~ngl~---------------------------------------~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~ 158 (694)
-+.....-. .++....||..++..+....+++|.|++.
T Consensus 96 fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--- 172 (270)
T PF07942_consen 96 FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--- 172 (270)
T ss_pred HHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---
Confidence 544321111 12333334433333211123689999884
Q ss_pred ccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 159 SELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 159 ~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.|+..-.-+-..++.+.++|+|||.-|
T Consensus 173 FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 173 FFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred EEeechHHHHHHHHHHHHHhccCCEEE
Confidence 333222223345566778999999655
No 370
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.01 E-value=0.0015 Score=64.46 Aligned_cols=114 Identities=10% Similarity=0.053 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCC----HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH--------------HH-----c
Q 044245 67 SCHVLDIGAGTG----LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL--------------HV-----N 123 (694)
Q Consensus 67 ~~~VLDiG~GtG----~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~--------------~~-----n 123 (694)
.-+|+..||+|| .++|.+...+.... .-..+|+|.|+|+.+++.|++=+ +. .
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~-----~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~ 106 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGAL-----GWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERD 106 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-T-----T-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccC-----CCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccC
Confidence 468999999999 67777777433110 01369999999999999998621 00 0
Q ss_pred --C------CCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCce
Q 044245 124 --G------MGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 124 --g------l~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
+ +.++|++...+..+.. ...++||+|+|--+-.+ +.+.....+.+.+.+.|+|||.++-...
T Consensus 107 ~~~~~v~~~lr~~V~F~~~NL~~~~---~~~~~fD~I~CRNVlIY-F~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 107 GGGYRVKPELRKMVRFRRHNLLDPD---PPFGRFDLIFCRNVLIY-FDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGG-S-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred CCceeEChHHcCceEEEecccCCCC---cccCCccEEEecCEEEE-eCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 1 1146777777766611 23478999999522111 1233456677788889999999886544
No 371
>PRK03612 spermidine synthase; Provisional
Probab=97.01 E-value=0.0029 Score=72.16 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=68.8
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHh-----ccCCcccccEEEeecccccccccccCCc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVA-----DPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~-----~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
+.+.|||||+| |.++..+++.++.++|+.+|- ++...+.+++.. ..+.++..+++++.++..+.-. .. ++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEi--d~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~-~~-~~ 372 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDL--DPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR-KL-AE 372 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEEC--CHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH-hC-CC
Confidence 45689999999 888888888753489999999 665556666521 1123442589999887665322 11 46
Q ss_pred cccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEEcce
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~P~~ 524 (694)
+.|+||+.+.+.. +--. ..+ .| +. ...+.|+|||+++=+.
T Consensus 373 ~fDvIi~D~~~~~--~~~~-~~L~t~ef-~~--~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 373 KFDVIIVDLPDPS--NPAL-GKLYSVEF-YR--LLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCEEEEeCCCCC--Ccch-hccchHHH-HH--HHHHhcCCCeEEEEec
Confidence 8999999864321 1101 112 11 11 1234699999876443
No 372
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.99 E-value=0.0035 Score=64.54 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=57.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+.+.|||+||| |.++...++.| .+|+++|. ++.+.+.+++ +.- .+.++.++.+++. ++.++.|+|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~--s~~~l~~a~~----~~~---~~~~~~~d~~~~~---~~~~~fD~V 107 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG--SQVTALDL--SPPMLAQARQ----KDA---ADHYLAGDIESLP---LATATFDLA 107 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC--CeEEEEEC--CHHHHHHHHh----hCC---CCCEEEcCcccCc---CCCCcEEEE
Confidence 35689999999 98887777775 58999999 6654444433 221 2355666655543 334679999
Q ss_pred EccccccCCccccCcc-hhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQ-NLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~-~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|-.. +.|. .+. ..-..+.+.|+|||.++
T Consensus 108 ~s~~~-------l~~~~d~~--~~l~~~~~~Lk~gG~l~ 137 (251)
T PRK10258 108 WSNLA-------VQWCGNLS--TALRELYRVVRPGGVVA 137 (251)
T ss_pred EECch-------hhhcCCHH--HHHHHHHHHcCCCeEEE
Confidence 98631 1121 111 11122234799999765
No 373
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.97 E-value=0.0022 Score=64.87 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCC
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPG 437 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~ 437 (694)
....++......+++++|||+||| |.++.++++.| |++|||++.+
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~ 107 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVG 107 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCC
Confidence 445566665545688999999999 99999999996 9999999993
No 374
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.94 E-value=0.0028 Score=67.40 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=64.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
.|-+|+|+=+| |-.|+-+|++| +.+|||+|- ++.|.++++++++.|+++ ++|+.|.|++.++... ...+|-|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~di--NP~A~~~L~eNi~LN~v~-~~v~~i~gD~rev~~~---~~~aDrI 260 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDI--NPDAVEYLKENIRLNKVE-GRVEPILGDAREVAPE---LGVADRI 260 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcC-CceEEEEec--CHHHHHHHHHHHHhcCcc-ceeeEEeccHHHhhhc---cccCCEE
Confidence 47899999999 99999999997 555999999 999999999999999998 8999999998877542 1568877
Q ss_pred Ecc
Q 044245 484 IGE 486 (694)
Q Consensus 484 vsE 486 (694)
|.=
T Consensus 261 im~ 263 (341)
T COG2520 261 IMG 263 (341)
T ss_pred EeC
Confidence 764
No 375
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.94 E-value=0.0029 Score=68.88 Aligned_cols=102 Identities=25% Similarity=0.297 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEeccccccccccC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR-NIKVINKRSDELEVGVD 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-~I~vi~~~~~~l~~~~~ 144 (694)
.+.+|||.=+|||+=++..++..+ +..+|++.|+|+++++.+++|++.|++++ ++++.+.|...+-. .
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~---------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~--~ 117 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELA---------GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY--S 117 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-S---------SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC--H
T ss_pred CCceEEeccccccHHHHHHHHHcC---------CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh--h
Confidence 456899999999999999999843 23699999999999999999999999998 79999989877642 2
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..++||+|=.+++|+- .+.+..+++ .++.||.+.
T Consensus 118 ~~~~fD~IDlDPfGSp------~pfldsA~~-~v~~gGll~ 151 (377)
T PF02005_consen 118 RQERFDVIDLDPFGSP------APFLDSALQ-AVKDGGLLC 151 (377)
T ss_dssp STT-EEEEEE--SS--------HHHHHHHHH-HEEEEEEEE
T ss_pred ccccCCEEEeCCCCCc------cHhHHHHHH-HhhcCCEEE
Confidence 2478999998988852 344444444 677777653
No 376
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.92 E-value=0.0057 Score=61.99 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=60.3
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |.++...++.+...+|+++|. ++.+.+.+++. +. ++++++.+..++.. ++.+++|+|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~--~~~~~~~~~~~-----~~-~~~~~~~~d~~~~~---~~~~~fD~v 102 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDI--SAGMLAQAKTK-----LS-ENVQFICGDAEKLP---LEDSSFDLI 102 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeC--hHHHHHHHHHh-----cC-CCCeEEecchhhCC---CCCCceeEE
Confidence 34689999999 877777777764567899999 55444344322 22 46788887665543 235789999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-..... ++ +...+ . ..+.+.|+|||.++
T Consensus 103 i~~~~l~~----~~-~~~~~--l-~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 103 VSNLALQW----CD-DLSQA--L-SELARVLKPGGLLA 132 (240)
T ss_pred EEhhhhhh----cc-CHHHH--H-HHHHHHcCCCcEEE
Confidence 98642110 11 11111 1 22234799999775
No 377
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.92 E-value=0.00093 Score=65.33 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELE 140 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~ 140 (694)
...+|+|.-||.|.-++..|..++ .|+++|++|.-+.+|++|++-.|++++|++++||+.++-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~------------~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP------------YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA 156 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC------------eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH
Confidence 346899999999988888888886 899999999999999999999999999999999987754
No 378
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.89 E-value=0.005 Score=68.56 Aligned_cols=116 Identities=16% Similarity=0.026 Sum_probs=77.0
Q ss_pred CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..+|..|||+|+| |-.++.+|+. ++..+|+|+|. ++...+.+++.+++.|+. +|+++.++..++.. ...++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Di--s~~rl~~~~~n~~r~g~~--~v~~~~~Da~~l~~--~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDI--SREKIQLVEKHAKRLKLS--SIEIKIADAERLTE--YVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC--eEEEEECchhhhhh--hhhccC
Confidence 3467899999999 8777666664 33579999999 666667788889999985 58998887665431 113679
Q ss_pred cEEEccccccCCccccCc--chhh--------------HHHHHhhcccccCCCceEEcceEE
Q 044245 481 DLLIGEPYYFGNDGMLPW--QNLR--------------FWKERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w--~~l~--------------f~~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
|.|+..+-|.+ +|++.- +... .-....+ .++|+|||.++=+.|+
T Consensus 309 D~Vl~DaPCsg-~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a-~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 309 DRILVDAPCTS-LGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQA-WKLLEKGGILLYSTCT 368 (431)
T ss_pred CEEEECCCCCC-CccccCChHHHHhCCHHHHHHHHHHHHHHHHHH-HHhcCCCCEEEEEECC
Confidence 99999865554 365530 1110 0012222 2579999988655555
No 379
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.86 E-value=0.0056 Score=59.77 Aligned_cols=103 Identities=22% Similarity=0.181 Sum_probs=71.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC--CCcEEEEeccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM--GRNIKVINKRSDELEVG 142 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl--~~~I~vi~~~~~~l~~~ 142 (694)
.+|.+||.||-|.|+..-.+-++-+ .+=+.||.+|..++..|. +|+ .++|.++.+.+++...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-----------~~H~IiE~hp~V~krmr~----~gw~ek~nViil~g~WeDvl~- 163 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-----------DEHWIIEAHPDVLKRMRD----WGWREKENVIILEGRWEDVLN- 163 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-----------cceEEEecCHHHHHHHHh----cccccccceEEEecchHhhhc-
Confidence 5789999999999999888766644 566889999998877665 454 3689999999988642
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.-.++.||-|.-+.++ -+.|+...... ..-++|+|+|++--
T Consensus 164 ~L~d~~FDGI~yDTy~--e~yEdl~~~hq-h~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDTYS--ELYEDLRHFHQ-HVVRLLKPEGVFSY 204 (271)
T ss_pred cccccCcceeEeechh--hHHHHHHHHHH-HHhhhcCCCceEEE
Confidence 1123569999865432 12233333333 33469999987743
No 380
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.86 E-value=0.0031 Score=59.65 Aligned_cols=50 Identities=6% Similarity=-0.152 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhc-CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhH
Q 044245 389 WRLSMVMAMRNALQ-GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKG 442 (694)
Q Consensus 389 r~~~y~~Ai~~~~~-~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~ 442 (694)
+.+.+.+.|.+... ..+++.|||+||| |.++-..++.| . +|+++|. ++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~~g~D~--~~~~ 56 (161)
T PF13489_consen 5 RYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG-F-EVTGVDI--SPQM 56 (161)
T ss_dssp CCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT-S-EEEEEES--SHHH
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC-C-EEEEEEC--CHHH
Confidence 34556666766664 4567899999999 87766668886 5 9999999 5543
No 381
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.82 E-value=0.0095 Score=61.57 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCC----HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH-----cCCC-----------
Q 044245 67 SCHVLDIGAGTG----LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV-----NGMG----------- 126 (694)
Q Consensus 67 ~~~VLDiG~GtG----~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~-----ngl~----------- 126 (694)
.-+|+-+||+|| .++|.+.+.++. ......+|+|.|+|..+++.|++=+=. .+++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~-----~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~ 171 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGK-----LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERG 171 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhcc-----ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeec
Confidence 468999999999 788888888751 011247999999999999998753210 1111
Q ss_pred ------------CcEEEEeccccccccccCCCCCccEEEEccccccccC--CChHHHHHHHHHhccCCCCeEEcCc
Q 044245 127 ------------RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLG--EGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 127 ------------~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~--e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..|.+-..+..+-. ...++||+|+|- ..+++ +.....+.......|+|||.++-..
T Consensus 172 ~~~~y~v~~~ir~~V~F~~~NLl~~~---~~~~~fD~IfCR---NVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 172 GDGSYRVKEELRKMVRFRRHNLLDDS---PFLGKFDLIFCR---NVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred CCCcEEEChHHhcccEEeecCCCCCc---cccCCCCEEEEc---ceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 12333333322211 144679999994 22222 4445567777778999999987553
No 382
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.81 E-value=0.004 Score=66.38 Aligned_cols=91 Identities=20% Similarity=0.146 Sum_probs=56.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCc-EEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN-IKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~-I~vi~~~~~~l~~~~ 143 (694)
.++.+|+|-.||+|.+.+.+.+..... ....+..+++|+|+++.++..|+.++..++.... ..+..++...-...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~---~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~- 120 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEK---RNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF- 120 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTC---HHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC-
T ss_pred cccceeechhhhHHHHHHHHHHhhccc---ccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc-
Confidence 346789999999999988887742000 0000136899999999999999988877765433 45777776543311
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
...++||+|+++|...
T Consensus 121 ~~~~~~D~ii~NPPf~ 136 (311)
T PF02384_consen 121 IKNQKFDVIIGNPPFG 136 (311)
T ss_dssp TST--EEEEEEE--CT
T ss_pred ccccccccccCCCCcc
Confidence 1136899999998554
No 383
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.81 E-value=0.0068 Score=65.76 Aligned_cols=76 Identities=5% Similarity=-0.046 Sum_probs=52.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
.+.++|||||| |-..+.+|+......|+++|- +..+...+.+-+..+|+. +|.++++++..+.. .++.+.+|.|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI--~~~~i~~a~~ka~~~gL~--NV~~i~~DA~~ll~-~~~~~s~D~I 196 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEI--HTPSIEQVLKQIELLNLK--NLLIINYDARLLLE-LLPSNSVEKI 196 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEEC--CHHHHHHHHHHHHHcCCC--cEEEEECCHHHhhh-hCCCCceeEE
Confidence 45789999999 755555555422578999999 444334455556778985 69999998765532 3455778888
Q ss_pred Ec
Q 044245 484 IG 485 (694)
Q Consensus 484 vs 485 (694)
..
T Consensus 197 ~l 198 (390)
T PRK14121 197 FV 198 (390)
T ss_pred EE
Confidence 65
No 384
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.80 E-value=0.0059 Score=61.28 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=59.6
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-------------cccEEEeecccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-------------IDRVEILQKGKKCL 470 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-------------~~~i~vi~~~~~~~ 470 (694)
++..|||+||| |-=+.+.|+.| -+|+++|- |+.|.+. ..++||+. ..+|+++.++..++
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~--S~~Ai~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQG--HRVLGVEL--SEIAVEQ---FFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCC--CeEEEEeC--CHHHHHH---HHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 45689999999 88888888886 68999999 7766443 23445442 13577777765554
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
.... .++.|.|+-=..+. .++ ...+--|. ..+.++|+|||.
T Consensus 107 ~~~~--~~~fD~i~D~~~~~----~l~-~~~R~~~~-~~l~~lLkpgG~ 147 (213)
T TIGR03840 107 TAAD--LGPVDAVYDRAALI----ALP-EEMRQRYA-AHLLALLPPGAR 147 (213)
T ss_pred Cccc--CCCcCEEEechhhc----cCC-HHHHHHHH-HHHHHHcCCCCe
Confidence 4211 13467766544322 233 22211111 123458999986
No 385
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.80 E-value=0.0095 Score=62.53 Aligned_cols=119 Identities=23% Similarity=0.186 Sum_probs=83.1
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
...++..|||+++|.|.=+..++.... +.+.|+|+|.++.-+...+.++++.|.. +|.++..|......
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~---------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~- 150 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMG---------NKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDP- 150 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTT---------TTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHH-
T ss_pred cccccccccccccCCCCceeeeeeccc---------chhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccc-
Confidence 356789999999999988888887764 3479999999999999999999999986 78888877776531
Q ss_pred cCCCCCccEEEEcccccc--ccCCC----------hHH-------HHHHHHHhcc----CCCCeEEcCceEEE
Q 044245 143 VDIDSRADILVSEILDSE--LLGEG----------LIP-------TLQHAHDRLL----VENPLTVPCRVTTY 192 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~--l~~e~----------~l~-------~l~~~~~~~L----~p~G~iiP~~~~~~ 192 (694)
......||.|+.+..=++ .+... .+. .++....+++ +|||+++=..+++.
T Consensus 151 ~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 151 KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 111236999998763332 22211 111 3444445688 99998875555444
No 386
>PLN02823 spermine synthase
Probab=96.77 E-value=0.0081 Score=64.39 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=74.2
Q ss_pred HHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC--CcccccEEEeeccc
Q 044245 393 MVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN--CFSIDRVEILQKGK 467 (694)
Q Consensus 393 y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N--~l~~~~i~vi~~~~ 467 (694)
|.+++....-. ...+.||+||.| |.++..+.+..+..+|..||- .+...+++++....| ++...+++++.++.
T Consensus 89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEi--D~~vv~lar~~~~~~~~~~~dprv~v~~~Da 166 (336)
T PLN02823 89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDI--DQEVVDFCRKHLTVNREAFCDKRLELIINDA 166 (336)
T ss_pred HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEEC--CHHHHHHHHHhcccccccccCCceEEEEChh
Confidence 66665544221 134689999999 888887878655789999998 565566777766543 24336899998765
Q ss_pred ccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 468 KCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
-+.-. . ..++.|+||...+.-. .+.-+ ..| .| |.+ ...+.|+|||+++
T Consensus 167 ~~~L~-~-~~~~yDvIi~D~~dp~-~~~~~-~~Lyt~eF-~~~-~~~~~L~p~Gvlv 217 (336)
T PLN02823 167 RAELE-K-RDEKFDVIIGDLADPV-EGGPC-YQLYTKSF-YER-IVKPKLNPGGIFV 217 (336)
T ss_pred HHHHh-h-CCCCccEEEecCCCcc-ccCcc-hhhccHHH-HHH-HHHHhcCCCcEEE
Confidence 54321 1 2478999999853321 01112 112 22 221 2234699999764
No 387
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.77 E-value=0.003 Score=58.84 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=46.1
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
+|+|+|+| |..++.+++.+...+|+++|+ .+.+.+.+++.++.|+++ ++++++.-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~--~~~~~~~l~~~~~~n~~~--~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEP--LPDAYEILEENVKLNNLP--NVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEec--CHHHHHHHHHHHHHcCCC--cEEEEEee
Confidence 48999999 999999999863348999999 777777888999999995 58888764
No 388
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.77 E-value=0.0025 Score=66.48 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=59.9
Q ss_pred HHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 395 MAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 395 ~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
+.|.+.. +|+.||++=+= |-.|+.||+.| |++|++|+. |..+.+.++++++.||++.++++++..++-+.-.
T Consensus 116 ~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~--S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~- 188 (286)
T PF10672_consen 116 KWVRKYA---KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDS--SKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK- 188 (286)
T ss_dssp HHHHHHC---TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES---HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH-
T ss_pred HHHHHHc---CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeC--CHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH-
Confidence 3445444 57899996543 67889998875 999999999 7888889999999999976799999887643211
Q ss_pred cc-CCccccEEEccc
Q 044245 474 DT-QQKKVDLLIGEP 487 (694)
Q Consensus 474 ~l-~~~~vDvivsE~ 487 (694)
.+ ..++.|+||..|
T Consensus 189 ~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 189 RLKKGGRFDLIILDP 203 (286)
T ss_dssp HHHHTT-EEEEEE--
T ss_pred HHhcCCCCCEEEECC
Confidence 11 146899999995
No 389
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0048 Score=68.28 Aligned_cols=92 Identities=12% Similarity=0.000 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
++....-..+.....++..|+|+=|| |..++.+|+. +++|+++|- ++-|.+.|+++++.||+. +++++.+.+|
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi--~~~aV~~A~~NA~~n~i~--N~~f~~~~ae 351 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEI--SPEAVEAAQENAAANGID--NVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEec--CHHHHHHHHHHHHHcCCC--cEEEEeCCHH
Confidence 44444444444444566789999999 9999999975 799999999 787888899999999996 4999999999
Q ss_pred cccccccCCccccEEEccc
Q 044245 469 CLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~ 487 (694)
++......+.+.|+||-.|
T Consensus 352 ~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred HHhhhccccCCCCEEEECC
Confidence 8876432346789999986
No 390
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.75 E-value=0.0071 Score=61.22 Aligned_cols=72 Identities=13% Similarity=-0.019 Sum_probs=55.2
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+||| |.++...++.| + +|+++|. ++.+.+.+++....+++. ++|+++.+..+ . . .+..|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~-~-~v~~~D~--s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~---~--~-~~~fD~ 130 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG-A-KVVASDI--SPQMVEEARERAPEAGLA-GNITFEVGDLE---S--L-LGRFDT 130 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC-C-EEEEEEC--CHHHHHHHHHHHHhcCCc-cCcEEEEcCch---h--c-cCCcCE
Confidence 356789999999 99888888886 4 5999999 666666778777778876 78998887522 2 1 356899
Q ss_pred EEcc
Q 044245 483 LIGE 486 (694)
Q Consensus 483 ivsE 486 (694)
|++-
T Consensus 131 v~~~ 134 (230)
T PRK07580 131 VVCL 134 (230)
T ss_pred EEEc
Confidence 9874
No 391
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.74 E-value=0.0054 Score=56.68 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=55.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC-CccEEEEccccccccC-CC--------hHHHHH
Q 044245 102 MVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS-RADILVSEILDSELLG-EG--------LIPTLQ 171 (694)
Q Consensus 102 ~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~-~~DlIvse~~~~~l~~-e~--------~l~~l~ 171 (694)
+|+|.|+.+.+++.++++++.+++.++|+++....+++.. .+++ ++|+++.|+ |+ |-+ +. .+..+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~--~i~~~~v~~~iFNL-GY-LPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDE--YIPEGPVDAAIFNL-GY-LPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGG--T--S--EEEEEEEE-SB--CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHh--hCccCCcCEEEEEC-Cc-CCCCCCCCCcCcHHHHHHHH
Confidence 6999999999999999999999999899999999888763 3445 899999873 33 222 11 233444
Q ss_pred HHHHhccCCCCeEE
Q 044245 172 HAHDRLLVENPLTV 185 (694)
Q Consensus 172 ~~~~~~L~p~G~ii 185 (694)
.++ ++|+|||++.
T Consensus 77 ~al-~lL~~gG~i~ 89 (140)
T PF06962_consen 77 AAL-ELLKPGGIIT 89 (140)
T ss_dssp HHH-HHEEEEEEEE
T ss_pred HHH-HhhccCCEEE
Confidence 444 4899999875
No 392
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.0036 Score=57.35 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=74.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+.+|+|+|.|.+-+.++|.|. ..-+++|.|+-.+.++|-.+-+.|...+..+..+|....++
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g~-----------~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl----- 136 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCGL-----------RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL----- 136 (199)
T ss_pred CCcEEeccCCCceeehhhhhhCC-----------CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc-----
Confidence 46899999999999999999986 57899999999999999988889999899998888766543
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+..++. ++ .|.+++.+.+.++.-+..+.+++-+
T Consensus 137 ~dy~~vvi--Fg----aes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 137 RDYRNVVI--FG----AESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred cccceEEE--ee----hHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 22333331 11 3667787877776555555555533
No 393
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.71 E-value=0.01 Score=61.89 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=69.1
Q ss_pred HHHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc-CC-cccccEEEeecc
Q 044245 392 SMVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP-NC-FSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~-N~-l~~~~i~vi~~~ 466 (694)
.|.+.+.... .....+.||+||+| |.++..+++.+.+++|..+|. ++...+.+++.... ++ +...+++++.++
T Consensus 57 ~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~vei--d~~vi~~a~~~~~~~~~~~~~~~v~i~~~D 134 (270)
T TIGR00417 57 IYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDI--DEKVIELSKKFLPSLAGSYDDPRVDLQIDD 134 (270)
T ss_pred HHHHHhhhhHhhcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeC--CHHHHHHHHHHhHhhcccccCCceEEEECc
Confidence 3555554321 11234589999999 777766667654789999999 55555566665432 22 322478887754
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEEcc
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
..+.-. .. .++.|+||+..++.. +. . ..| .| + ....+.|+|||+++=.
T Consensus 135 ~~~~l~-~~-~~~yDvIi~D~~~~~--~~-~-~~l~~~ef-~--~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 135 GFKFLA-DT-ENTFDVIIVDSTDPV--GP-A-ETLFTKEF-Y--ELLKKALNEDGIFVAQ 185 (270)
T ss_pred hHHHHH-hC-CCCccEEEEeCCCCC--Cc-c-cchhHHHH-H--HHHHHHhCCCcEEEEc
Confidence 332211 11 368999999864321 11 1 122 11 1 1223469999987644
No 394
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.66 E-value=0.0077 Score=61.69 Aligned_cols=104 Identities=6% Similarity=-0.031 Sum_probs=68.4
Q ss_pred CCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC-----C
Q 044245 405 VQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ-----Q 477 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~-----~ 477 (694)
+.+.||+||++ |+=++..|++ +.-.+|+++|. .+...++|++.++..|++ ++|+++.|...++-. .|. .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~--~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e~L~-~l~~~~~~~ 154 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDI--NRENYELGLPVIQKAGVA-HKIDFREGPALPVLD-QMIEDGKYH 154 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeC--CHHHHHHHHHHHHHCCCC-CceEEEeccHHHHHH-HHHhccccC
Confidence 45689999998 7777766664 21248999999 565567889999999998 999999997655421 121 2
Q ss_pred ccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 478 KKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 478 ~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
++.|+|.-.--- +..+. |.... .++|+|||.|+=+
T Consensus 155 ~~fD~iFiDadK---~~Y~~-------y~~~~-l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADK---DNYIN-------YHKRL-IDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCH---HHhHH-------HHHHH-HHhcCCCeEEEEc
Confidence 467888765200 01111 22222 2469999987644
No 395
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.65 E-value=0.0095 Score=59.55 Aligned_cols=121 Identities=11% Similarity=0.114 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeec-c
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQK-G 466 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~-~ 466 (694)
+..|-..+.+.. +.+.||.||++ |+=+++-|.+ ..-.+++++|. .+...+.|+++.++-|+. ++|+++.+ +
T Consensus 47 ~g~~L~~L~~~~---~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~--~~e~~~~A~~n~~~ag~~-~~i~~~~~gd 120 (219)
T COG4122 47 TGALLRLLARLS---GPKRILEIGTAIGYSALWMALALPDDGRLTTIER--DEERAEIARENLAEAGVD-DRIELLLGGD 120 (219)
T ss_pred HHHHHHHHHHhc---CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeC--CHHHHHHHHHHHHHcCCc-ceEEEEecCc
Confidence 455666666555 56789999999 8888777775 21358999999 666667899999999998 89999984 3
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILK 528 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~ 528 (694)
.-+.-.. +..+..|+|.-.- . -+--| .| . +...++|+|||+|+=+.+-.-
T Consensus 121 al~~l~~-~~~~~fDliFIDa---d-K~~yp----~~--l-e~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 121 ALDVLSR-LLDGSFDLVFIDA---D-KADYP----EY--L-ERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHHHHh-ccCCCccEEEEeC---C-hhhCH----HH--H-HHHHHHhCCCcEEEEeecccC
Confidence 2222111 2235677776641 0 00001 11 1 112236999999887765443
No 396
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.64 E-value=0.005 Score=66.74 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=62.4
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc-----c---C-
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD-----T---Q- 476 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~-----l---~- 476 (694)
+.|||++|| |.+|+..|+. +++|+++|. ++.+.+.++++++.||++ +++++.++++++-... + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~--~~~v~~vE~--~~~av~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~~~~ 272 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN--FRRVLATEI--AKPSVNAAQYNIAANNID--NVQIIRMSAEEFTQAMNGVREFRRLKG 272 (353)
T ss_pred CcEEEEeccccHHHHHHHHh--CCEEEEEEC--CHHHHHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHhhccccccccc
Confidence 359999999 9999988885 679999999 777778899999999995 6999999887643210 1 0
Q ss_pred ----CccccEEEccccccCCccccC
Q 044245 477 ----QKKVDLLIGEPYYFGNDGMLP 497 (694)
Q Consensus 477 ----~~~vDvivsE~~~~~~e~~l~ 497 (694)
..+.|+|+-.|=.. |+.+
T Consensus 273 ~~~~~~~~d~v~lDPPR~---G~~~ 294 (353)
T TIGR02143 273 IDLKSYNCSTIFVDPPRA---GLDP 294 (353)
T ss_pred cccccCCCCEEEECCCCC---CCcH
Confidence 12369999996322 5555
No 397
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.64 E-value=0.0018 Score=63.51 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=69.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
...++|||||.|.++..+...+- .+++-+|.|-.|++.++. ++.+++ .+....+|-+.+++. .
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v-----------ekli~~DtS~~M~~s~~~-~qdp~i--~~~~~v~DEE~Ldf~---e 135 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV-----------EKLIMMDTSYDMIKSCRD-AQDPSI--ETSYFVGDEEFLDFK---E 135 (325)
T ss_pred CcceeecccchhhhhHHHHhcch-----------hheeeeecchHHHHHhhc-cCCCce--EEEEEecchhccccc---c
Confidence 47899999999999988877764 689999999999998874 333444 344455666666542 3
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..+|+|++.+--+ +-..+|......+..|+|+|.++
T Consensus 136 ns~DLiisSlslH---W~NdLPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 136 NSVDLIISSLSLH---WTNDLPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred cchhhhhhhhhhh---hhccCchHHHHHHHhcCCCccch
Confidence 6899999843211 12234544444556899999887
No 398
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.02 Score=55.55 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=71.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+||=+|+-+|.-.-..+.-.. .+.|||||.++.+....-..++.. .||--|-+|++.-.-..
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~----------~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG----------EGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYR 140 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC----------CCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhh
Confidence 56789999999999987766666543 478999999997765544444432 25666777776543222
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+-+.+|+|..+.-. .+....+..-.+.+|+++|.++
T Consensus 141 ~~Ve~VDviy~DVAQ-----p~Qa~I~~~Na~~FLk~~G~~~ 177 (231)
T COG1889 141 HLVEKVDVIYQDVAQ-----PNQAEILADNAEFFLKKGGYVV 177 (231)
T ss_pred hhcccccEEEEecCC-----chHHHHHHHHHHHhcccCCeEE
Confidence 344679999876322 3445556666678999999654
No 399
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.59 E-value=0.0049 Score=66.78 Aligned_cols=97 Identities=14% Similarity=0.040 Sum_probs=63.1
Q ss_pred hcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEE
Q 044245 383 IYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVE 461 (694)
Q Consensus 383 ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~ 461 (694)
..|-..-..-|..|+.-.. ..++ .|||+=|| |-+|+..|+. +++|++||. .+.|.+.|+++++.||+ ++++
T Consensus 176 QvN~~~~~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~--~~~av~~A~~Na~~N~i--~n~~ 247 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEI--VEEAVEDARENAKLNGI--DNVE 247 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES---HHHHHHHHHHHHHTT----SEE
T ss_pred cCcHHHHHHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeC--CHHHHHHHHHHHHHcCC--Ccce
Confidence 3333333344555555433 3344 69999999 9999999997 689999999 77777889999999999 5799
Q ss_pred Eeeccccccccc-------------ccCCccccEEEccc
Q 044245 462 ILQKGKKCLTMD-------------DTQQKKVDLLIGEP 487 (694)
Q Consensus 462 vi~~~~~~~~~~-------------~l~~~~vDvivsE~ 487 (694)
++.+.++++... .+...++|+||-.|
T Consensus 248 f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDP 286 (352)
T PF05958_consen 248 FIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDP 286 (352)
T ss_dssp EEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE--
T ss_pred EEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcC
Confidence 999887765321 12223689999986
No 400
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.56 E-value=0.012 Score=61.40 Aligned_cols=49 Identities=27% Similarity=0.330 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
...+|||+|||+|.-...+..... . ..+++++|.|+.|++.++...+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~--------~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-S--------LKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-C--------ceeeeeecCCHHHHHHHHHHHhcc
Confidence 357999999999976555544433 1 258999999999999999877643
No 401
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.51 E-value=0.0081 Score=58.72 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=64.4
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE 486 (694)
.++|||+| |+=++-.|=+---.+|+-+|+ ...=...++.+++.-|++ +++|+++++|+. ....++|+|+|=
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs--~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~~----~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVES--VGKKVAFLKEVVRELGLS--NVEVINGRAEEP----EYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEES--SHHHHHHHHHHHHHHT-S--SEEEEES-HHHT----TTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeC--CchHHHHHHHHHHHhCCC--CEEEEEeeeccc----ccCCCccEEEee
Confidence 69999999 766655555432568999999 443334678999999995 799999998871 125789999996
Q ss_pred ccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEE
Q 044245 487 PYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 487 ~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
-+ -+...+.- +. .++|++||.++--++.
T Consensus 123 Av-------~~l~~l~~-~~----~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 123 AV-------APLDKLLE-LA----RPLLKPGGRLLAYKGP 150 (184)
T ss_dssp SS-------SSHHHHHH-HH----GGGEEEEEEEEEEESS
T ss_pred hh-------cCHHHHHH-HH----HHhcCCCCEEEEEcCC
Confidence 32 12122200 22 2368999987766553
No 402
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.51 E-value=0.03 Score=59.59 Aligned_cols=124 Identities=10% Similarity=0.037 Sum_probs=76.3
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE--
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV-- 131 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v-- 131 (694)
+.+...|...+.++..++|+|||+|.=+..+.++..+.. +..+.+++|+|..+++.+.+.+....++ .+++
T Consensus 64 ~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~------~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~ 136 (319)
T TIGR03439 64 KKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQK------KSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAG 136 (319)
T ss_pred HHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcC------CCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEE
Confidence 445566777788888999999999965444444332100 1257999999999999999888744554 4554
Q ss_pred Eeccccccc--ccc-CCCCCccEEEEccccccccC-CC-hHHHHHHHHHh-ccCCCCeEEc
Q 044245 132 INKRSDELE--VGV-DIDSRADILVSEILDSELLG-EG-LIPTLQHAHDR-LLVENPLTVP 186 (694)
Q Consensus 132 i~~~~~~l~--~~~-~l~~~~DlIvse~~~~~l~~-e~-~l~~l~~~~~~-~L~p~G~iiP 186 (694)
+.++..+.. ++. .......+++. +|+.+-+ +. ....++..+++ .|+||+.++-
T Consensus 137 l~gdy~~~l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 137 LLGTYDDGLAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred EEecHHHHHhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 788765531 111 11233456654 4443322 11 22345556666 8999988764
No 403
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.023 Score=54.33 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=71.9
Q ss_pred CCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 406 QPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
.++|++||+| |..|-|.++. |+-....|.+- ++.|.++..+.++.|+. +|.+|+.+ +-. .|..++|||+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDi--Np~A~~~Tl~TA~~n~~---~~~~V~td---l~~-~l~~~~VDvL 114 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDI--NPEALEATLETARCNRV---HIDVVRTD---LLS-GLRNESVDVL 114 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecC--CHHHHHHHHHHHHhcCC---ccceeehh---HHh-hhccCCccEE
Confidence 4799999999 8887777775 43444456665 88998888899999986 47777653 322 2335899999
Q ss_pred Eccc-cccCCccccCcchhhHHHH-----HhhcccccCCCceEEcceEEEEEEEccC
Q 044245 484 IGEP-YYFGNDGMLPWQNLRFWKE-----RSKLDPVLSKEVIIMPFKGILKACAIFC 534 (694)
Q Consensus 484 vsE~-~~~~~e~~l~w~~l~f~~~-----r~~~~~~L~p~g~i~P~~a~l~~~~v~~ 534 (694)
|=-| |-.--+.-++-+.|.+.++ |+-.+++|..=--++-.++..|+..+..
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA 171 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence 9874 3222122222244555455 2222334432222223345577777654
No 404
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.47 E-value=0.017 Score=58.69 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH-----HcCCCCcEEEEecccccccc
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH-----VNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~-----~ngl~~~I~vi~~~~~~l~~ 141 (694)
...||++|+|+|+.++.+|..+. ..|.--|. +......+.+.. .++++..+.+..-++.+...
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~-----------~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~ 154 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLG-----------AEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALD 154 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhc-----------ceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCccc
Confidence 46799999999999999999765 47777676 445555444433 34444466665555555432
Q ss_pred ccCCCCC-ccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecchhhhhh
Q 044245 142 GVDIDSR-ADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKL 204 (694)
Q Consensus 142 ~~~l~~~-~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~~l~~~ 204 (694)
....... +|+|++- ...+.++..+.+...++.+|..++ ++ ..+.+......|+.
T Consensus 155 ~~~~~~~~~Dlilas---Dvvy~~~~~e~Lv~tla~ll~~~~-~i-----~l~~~lr~~~~~~~ 209 (248)
T KOG2793|consen 155 VSFRLPNPFDLILAS---DVVYEEESFEGLVKTLAFLLAKDG-TI-----FLAYPLRRDAAWEI 209 (248)
T ss_pred HhhccCCcccEEEEe---eeeecCCcchhHHHHHHHHHhcCC-eE-----EEEEecccchHHHH
Confidence 2223344 8999873 233345566666777777888887 22 23334455555553
No 405
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.46 E-value=0.013 Score=61.17 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=54.0
Q ss_pred CCCcEEEecCC-chHHHHHHHc-CC--CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 405 VQPLCVVADDS-VFLTICVARL-SK--TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~-g~--a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
++..|||+||| |.++...++. +. ..+|+++|. ++.+.+.|++ + . ..++++.+..+++.. +.+.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~--s~~~l~~A~~----~-~--~~~~~~~~d~~~lp~---~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDI--SKVAIKYAAK----R-Y--PQVTFCVASSHRLPF---ADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECC--CHHHHHHHHH----h-C--CCCeEEEeecccCCC---cCCce
Confidence 34679999999 8665544443 21 237999999 6655545432 1 2 246677766555532 34679
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+|++=. . + ..+ ..+.+.|||||.++
T Consensus 153 D~I~~~~--~------~-~~~------~e~~rvLkpgG~li 178 (272)
T PRK11088 153 DAIIRIY--A------P-CKA------EELARVVKPGGIVI 178 (272)
T ss_pred eEEEEec--C------C-CCH------HHHHhhccCCCEEE
Confidence 9998721 1 2 112 11234699999876
No 406
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.42 E-value=0.0083 Score=65.25 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=63.5
Q ss_pred CcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 407 PLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
..|||+-+| |++++-+|+- +||++|+++|. ++.|.++++++++.|++. +++|++++...+-.. . .++.|+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~--n~~Av~~i~~N~~~N~~~--~~~v~~~Da~~~l~~-~-~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDI--NPKAVESIKNNVEYNSVE--NIEVPNEDAANVLRY-R-NRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeC--CHHHHHHHHHHHHHhCCC--cEEEEchhHHHHHHH-h-CCCCCEEE
Confidence 479999999 9999999986 25899999999 888999999999999984 689999876655321 1 35799999
Q ss_pred ccccc
Q 044245 485 GEPYY 489 (694)
Q Consensus 485 sE~~~ 489 (694)
-.||.
T Consensus 120 lDPfG 124 (374)
T TIGR00308 120 IDPFG 124 (374)
T ss_pred eCCCC
Confidence 99963
No 407
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.42 E-value=0.029 Score=56.42 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.|++||.||-+- +.|+.+|..+. ..+|+.+|+++.+++..++.++..|++ |+.+..|.++- ++..+
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~----------~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~-LP~~~ 109 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGL----------PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDP-LPEEL 109 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT------------SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TTT
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCC----------CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEeccccc-CCHHH
Confidence 489999999877 77888777664 369999999999999999999999995 99999888763 34556
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCC
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENP 182 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G 182 (694)
.++||+++++|.... +++--.+-..+. .|+..|
T Consensus 110 ~~~fD~f~TDPPyT~---~G~~LFlsRgi~-~Lk~~g 142 (243)
T PF01861_consen 110 RGKFDVFFTDPPYTP---EGLKLFLSRGIE-ALKGEG 142 (243)
T ss_dssp SS-BSEEEE---SSH---HHHHHHHHHHHH-TB-STT
T ss_pred hcCCCEEEeCCCCCH---HHHHHHHHHHHH-HhCCCC
Confidence 689999999987742 222223334444 555544
No 408
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=96.40 E-value=0.0052 Score=53.66 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=47.0
Q ss_pred EEEecCC-chHHHHHHHc---CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 409 CVVADDS-VFLTICVARL---SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 409 vldig~G-giLsl~aA~~---g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
|||+||| |-.....++. |-..++++++. ++.+-+.+++..+..+. ++++++.+.+++.. ..++.|+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~--s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~---~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDI--SPEMLELAKKRFSEDGP---KVRFVQADARDLPF---SDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES---HHHHHHHHHHSHHTTT---TSEEEESCTTCHHH---HSSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEEC--CHHHHHHHHHhchhcCC---ceEEEECCHhHCcc---cCCCeeEEE
Confidence 6999999 7665555554 21279999999 66666677777766555 57888888877653 246899999
Q ss_pred c
Q 044245 485 G 485 (694)
Q Consensus 485 s 485 (694)
+
T Consensus 73 ~ 73 (101)
T PF13649_consen 73 C 73 (101)
T ss_dssp E
T ss_pred E
Confidence 9
No 409
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.016 Score=59.43 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.|-++....++..|++||.| |.|....++. +++|+|+|- .+....++++... .. ++++||++++-.+..
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEi--D~~l~~~L~~~~~---~~-~n~~vi~~DaLk~d~ 90 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEI--DRRLAEVLKERFA---PY-DNLTVINGDALKFDF 90 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEe--CHHHHHHHHHhcc---cc-cceEEEeCchhcCcc
Confidence 3445555555567799999999 9999999998 467999998 4443444444332 33 799999998776665
Q ss_pred cccCCccccEEEcc-ccccC
Q 044245 473 DDTQQKKVDLLIGE-PYYFG 491 (694)
Q Consensus 473 ~~l~~~~vDvivsE-~~~~~ 491 (694)
..+. +.+-|||- ||+-+
T Consensus 91 ~~l~--~~~~vVaNlPY~Is 108 (259)
T COG0030 91 PSLA--QPYKVVANLPYNIS 108 (259)
T ss_pred hhhc--CCCEEEEcCCCccc
Confidence 4331 56889998 77664
No 410
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.35 E-value=0.01 Score=58.37 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=46.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|-|+|||-+.++..+. . ..+|+..|.-. .| ++ ++..|+..+++++
T Consensus 73 ~~viaD~GCGdA~la~~~~-~------------~~~V~SfDLva-----------~n---~~--Vtacdia~vPL~~--- 120 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVP-N------------KHKVHSFDLVA-----------PN---PR--VTACDIANVPLED--- 120 (219)
T ss_dssp TS-EEEES-TT-HHHHH---S---------------EEEEESS------------SS---TT--EEES-TTS-S--T---
T ss_pred CEEEEECCCchHHHHHhcc-c------------CceEEEeeccC-----------CC---CC--EEEecCccCcCCC---
Confidence 5799999999999874332 1 14799999731 12 24 4558888888643
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+.+|++|..+ .|++......+.++. |.|++||.+.
T Consensus 121 ~svDv~VfcL---SLMGTn~~~fi~EA~-RvLK~~G~L~ 155 (219)
T PF05148_consen 121 ESVDVAVFCL---SLMGTNWPDFIREAN-RVLKPGGILK 155 (219)
T ss_dssp T-EEEEEEES------SS-HHHHHHHHH-HHEEEEEEEE
T ss_pred CceeEEEEEh---hhhCCCcHHHHHHHH-heeccCcEEE
Confidence 6899998742 355666677777665 5999987654
No 411
>PHA01634 hypothetical protein
Probab=96.32 E-value=0.0072 Score=54.09 Aligned_cols=57 Identities=9% Similarity=-0.042 Sum_probs=44.6
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEee
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQ 464 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~ 464 (694)
.++++|+|||++ |=-|+.-+-.| |++|+|+|+ .+..+++.+++++.|++- |+.....
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~--~~kl~k~~een~k~nnI~-DK~v~~~ 84 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRG-ASFVVQYEK--EEKLRKKWEEVCAYFNIC-DKAVMKG 84 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcC-ccEEEEecc--CHHHHHHHHHHhhhheee-eceeecc
Confidence 468999999988 66666666665 999999999 787788888899888775 6554433
No 412
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=0.0075 Score=57.66 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=51.4
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec-ccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINK-RSDELEV 141 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~-~~~~l~~ 141 (694)
.+.++.+|||+||..|.++..+.+... |++.|.+||+- .+. .. ..++++.+ |+++-..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~---------p~g~v~gVDll---------h~~--p~-~Ga~~i~~~dvtdp~~ 124 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVN---------PNGMVLGVDLL---------HIE--PP-EGATIIQGNDVTDPET 124 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhC---------CCceEEEEeee---------ecc--CC-CCcccccccccCCHHH
Confidence 366799999999999999999998875 56899999972 111 12 24666666 4544221
Q ss_pred -----ccCCCCCccEEEEcccc
Q 044245 142 -----GVDIDSRADILVSEILD 158 (694)
Q Consensus 142 -----~~~l~~~~DlIvse~~~ 158 (694)
...-..++|+|+|++..
T Consensus 125 ~~ki~e~lp~r~VdvVlSDMap 146 (232)
T KOG4589|consen 125 YRKIFEALPNRPVDVVLSDMAP 146 (232)
T ss_pred HHHHHHhCCCCcccEEEeccCC
Confidence 01112579999998643
No 413
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.29 E-value=0.011 Score=57.47 Aligned_cols=116 Identities=11% Similarity=-0.005 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCC---CCC-cEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEE-E
Q 044245 390 RLSMVMAMRNALQGR---VQP-LCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVE-I 462 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~---~~~-~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~-v 462 (694)
.+.|++-|..++..+ .+| -||.|||| | =.-+.--+- -..|+.+++ ++.+.+++.+-++.|.-. +++ +
T Consensus 57 ~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p--~~svt~lDp--n~~mee~~~ks~~E~k~~--~~~~f 130 (252)
T KOG4300|consen 57 ADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKP--INSVTCLDP--NEKMEEIADKSAAEKKPL--QVERF 130 (252)
T ss_pred HHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCC--CceEEEeCC--cHHHHHHHHHHHhhccCc--ceEEE
Confidence 455677777764332 222 47999999 5 222222122 368999999 888888998888888653 555 7
Q ss_pred eecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 463 LQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 463 i~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.+..|++. +|+..++|+||+-.--++.|.- . -.-..++++|+|||+++
T Consensus 131 vva~ge~l~--~l~d~s~DtVV~TlvLCSve~~-----~---k~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 131 VVADGENLP--QLADGSYDTVVCTLVLCSVEDP-----V---KQLNEVRRLLRPGGRII 179 (252)
T ss_pred EeechhcCc--ccccCCeeeEEEEEEEeccCCH-----H---HHHHHHHHhcCCCcEEE
Confidence 777767654 4567899999987533322221 1 11123456899999764
No 414
>PRK10742 putative methyltransferase; Provisional
Probab=96.21 E-value=0.015 Score=59.07 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=65.6
Q ss_pred HHHHHhcCCCCC--cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC-------C-cccccEEEee
Q 044245 396 AMRNALQGRVQP--LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN-------C-FSIDRVEILQ 464 (694)
Q Consensus 396 Ai~~~~~~~~~~--~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N-------~-l~~~~i~vi~ 464 (694)
+|.++....++. .|||+=+| |-.|+.+|..| ++ |+.+|. ++.+..++++.++.- . +. .+|++++
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G-~~-V~~vEr--~p~vaalL~dgL~ra~~~~~~~~~~~-~ri~l~~ 151 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-CR-VRMLER--NPVVAALLDDGLARGYADAEIGGWLQ-ERLQLIH 151 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC-CE-EEEEEC--CHHHHHHHHHHHHHhhhccccchhhh-ceEEEEe
Confidence 455555444555 89999999 99999999997 76 999999 888777777766652 2 33 5899999
Q ss_pred cccccccccccCCccccEEEcccccc
Q 044245 465 KGKKCLTMDDTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 465 ~~~~~~~~~~l~~~~vDvivsE~~~~ 490 (694)
+++.+.-. .+ ++..|+|-..|+|-
T Consensus 152 ~da~~~L~-~~-~~~fDVVYlDPMfp 175 (250)
T PRK10742 152 ASSLTALT-DI-TPRPQVVYLDPMFP 175 (250)
T ss_pred CcHHHHHh-hC-CCCCcEEEECCCCC
Confidence 98765532 22 34689999999765
No 415
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.21 E-value=0.0077 Score=59.76 Aligned_cols=117 Identities=8% Similarity=-0.017 Sum_probs=70.9
Q ss_pred CCCCCcEEEecC--C-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc---ccC
Q 044245 403 GRVQPLCVVADD--S-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD---DTQ 476 (694)
Q Consensus 403 ~~~~~~vldig~--G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~---~l~ 476 (694)
.+..|++++||+ | |+|.+.-|=-- -.+|+|+|- .+.+.++..++++.-|.. ++|+++++..-+.-.. +.+
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~-dGrv~a~ei--d~~~~~~~~~~~k~agv~-~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPE-DGRVVAIEI--DADAYEIGLELVKLAGVD-HKITFIEGPALESLDELLADGE 146 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCC-CceEEEEec--ChHHHHHhHHHHHhcccc-ceeeeeecchhhhHHHHHhcCC
Confidence 345689999995 6 66654443321 258999999 667777888999999998 9999999975432111 112
Q ss_pred CccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccCh
Q 044245 477 QKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCP 535 (694)
Q Consensus 477 ~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~ 535 (694)
....|.+.- +-.--+|+....+.=+++++||+|+=+..--.. +|..+
T Consensus 147 ~~tfDfaFv-----------DadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G-~v~~p 193 (237)
T KOG1663|consen 147 SGTFDFAFV-----------DADKDNYSNYYERLLRLLRVGGVIVVDNVLWPG-VVADP 193 (237)
T ss_pred CCceeEEEE-----------ccchHHHHHHHHHHHhhcccccEEEEeccccCC-cccCc
Confidence 233444333 211111211112222479999999877765555 54443
No 416
>PRK06202 hypothetical protein; Provisional
Probab=96.19 E-value=0.017 Score=58.71 Aligned_cols=86 Identities=15% Similarity=0.095 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc----CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL----SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~----g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
.|.+.+...+...++..|||+||| |.++...++. |-..+|+++|. ++.+.+.+++....+++ ++....
T Consensus 47 ~~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~--s~~~l~~a~~~~~~~~~-----~~~~~~ 119 (232)
T PRK06202 47 LYRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDP--DPRAVAFARANPRRPGV-----TFRQAV 119 (232)
T ss_pred HHHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcC--CHHHHHHHHhccccCCC-----eEEEEe
Confidence 344444444443456789999999 8777666653 21248999999 66665666554444433 333333
Q ss_pred cccccccccCCccccEEEccc
Q 044245 467 KKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~ 487 (694)
.+.+.. .++++|+|++-.
T Consensus 120 ~~~l~~---~~~~fD~V~~~~ 137 (232)
T PRK06202 120 SDELVA---EGERFDVVTSNH 137 (232)
T ss_pred cccccc---cCCCccEEEECC
Confidence 333332 347899999963
No 417
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.16 E-value=0.023 Score=56.64 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=46.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.++...++..+..+|+++|. ++.+.+.|++. +. .++++++...+ ..+.++.|+|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDi--S~~~l~~A~~~-----~~--~~~~~~~d~~~----~~~~~sfD~V 109 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEI--NEYAVEKAKAY-----LP--NINIIQGSLFD----PFKDNFFDLV 109 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHhh-----CC--CCcEEEeeccC----CCCCCCEEEE
Confidence 45679999999 877666666422478999999 66655555432 22 35666665433 2235789999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
++-.
T Consensus 110 ~~~~ 113 (204)
T TIGR03587 110 LTKG 113 (204)
T ss_pred EECC
Confidence 9864
No 418
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.15 E-value=0.014 Score=58.19 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=50.1
Q ss_pred EEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc-ccEEEcc
Q 044245 409 CVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK-VDLLIGE 486 (694)
Q Consensus 409 vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~-vDvivsE 486 (694)
|.||||- |.|++.+.+.|.+++|+|+|-+..+. +-|++.++.+|+. ++|++.-++ -++ .+.+.. +|.||-=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL--~~A~~~i~~~~l~-~~i~~rlgd--GL~--~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL--EKAKENIAKYGLE-DRIEVRLGD--GLE--VLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH--HHHHHHHHHTT-T-TTEEEEE-S--GGG--G--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH--HHHHHHHHHcCCc-ccEEEEECC--ccc--ccCCCCCCCEEEEe
Confidence 6799998 99999999999899999999843443 4578888999998 999998875 222 233344 8877654
Q ss_pred c
Q 044245 487 P 487 (694)
Q Consensus 487 ~ 487 (694)
+
T Consensus 74 G 74 (205)
T PF04816_consen 74 G 74 (205)
T ss_dssp E
T ss_pred c
Confidence 4
No 419
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.15 E-value=0.024 Score=58.50 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=54.5
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.+.....++..|||+|+| |.|+...++.+ .+|+++|. ++.+.+.+++.... . +++++++++..++....
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~--d~~~~~~l~~~~~~---~-~~v~v~~~D~~~~~~~~ 91 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEI--DPRLAEILRKLLSL---Y-ERLEVIEGDALKVDLPD 91 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEEC--CHHHHHHHHHHhCc---C-CcEEEEECchhcCChhH
Confidence 33444334467799999999 99998888884 57999999 55555555554432 2 57999999776654321
Q ss_pred cCCccccEEEccc
Q 044245 475 TQQKKVDLLIGEP 487 (694)
Q Consensus 475 l~~~~vDvivsE~ 487 (694)
. ...+.|||-+
T Consensus 92 ~--d~~~~vvsNl 102 (253)
T TIGR00755 92 F--PKQLKVVSNL 102 (253)
T ss_pred c--CCcceEEEcC
Confidence 1 1114888874
No 420
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.13 E-value=0.024 Score=60.33 Aligned_cols=72 Identities=13% Similarity=-0.163 Sum_probs=51.0
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCc---ccccEEEeecccccccccccCCccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCF---SIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l---~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
++..|||+||| |.++...++.| .+|+++|. ++.+.+.+++.++..+. ...++++...+.++ + .++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~--S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-----l-~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDI--SAAMVAEAERRAKEALAALPPEVLPKFEANDLES-----L-SGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEEC--CHHHHHHHHHHHHhcccccccccceEEEEcchhh-----c-CCCc
Confidence 56789999999 99999999985 48999999 67666677766654321 11356676654332 2 3678
Q ss_pred cEEEcc
Q 044245 481 DLLIGE 486 (694)
Q Consensus 481 DvivsE 486 (694)
|+|++-
T Consensus 214 D~Vv~~ 219 (315)
T PLN02585 214 DTVTCL 219 (315)
T ss_pred CEEEEc
Confidence 999875
No 421
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.07 E-value=0.072 Score=48.66 Aligned_cols=102 Identities=23% Similarity=0.219 Sum_probs=61.6
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc--cccccCCCC
Q 044245 70 VLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE--LEVGVDIDS 147 (694)
Q Consensus 70 VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~--l~~~~~l~~ 147 (694)
++|+|||+|... .+++... ....++++|.++.++..++......+.. .+.++.++... +.+.. ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~ 118 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG---------RGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFED--SA 118 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC---------CCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCC--CC
Confidence 999999999877 4444432 0137899999999998855444331111 16777777665 33211 03
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
.+|++.+.... . ... .........+.|+|+|.++...
T Consensus 119 ~~d~~~~~~~~-~--~~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 119 SFDLVISLLVL-H--LLP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred ceeEEeeeeeh-h--cCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 78988432111 1 111 4556666677899988776443
No 422
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=0.033 Score=59.08 Aligned_cols=99 Identities=23% Similarity=0.234 Sum_probs=76.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+|||-=+|||+=++..|.... ..+|+.-|+||.+.+.+++|++.|... ++.++++|...+-. ...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~----------~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~--~~~ 119 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG----------VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLH--ELH 119 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC----------ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHH--hcC
Confidence 67999999999999999998875 248999999999999999999999544 57777788777653 234
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..||+|=.+|+|+- .|.+..+++ .++.+|.+-
T Consensus 120 ~~fd~IDiDPFGSP------aPFlDaA~~-s~~~~G~l~ 151 (380)
T COG1867 120 RAFDVIDIDPFGSP------APFLDAALR-SVRRGGLLC 151 (380)
T ss_pred CCccEEecCCCCCC------chHHHHHHH-HhhcCCEEE
Confidence 68999988888862 344444443 567777764
No 423
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.015 Score=64.06 Aligned_cols=92 Identities=10% Similarity=-0.035 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
-+..++-|..+...-.|+.++|+=|| |..++..|+- +++||.||- ++.|...|++.++.||++ +.++|.|..|
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi--~~~aV~dA~~nA~~Ngis--Na~Fi~gqaE 441 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEI--SPDAVEDAEKNAQINGIS--NATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeec--ChhhcchhhhcchhcCcc--ceeeeecchh
Confidence 34567778888877778999999999 9999999993 999999999 777778899999999996 7999999888
Q ss_pred cccccccCC--cccc-EEEccc
Q 044245 469 CLTMDDTQQ--KKVD-LLIGEP 487 (694)
Q Consensus 469 ~~~~~~l~~--~~vD-vivsE~ 487 (694)
++-...+.+ ..-+ +.|..|
T Consensus 442 ~~~~sl~~~~~~~~~~v~iiDP 463 (534)
T KOG2187|consen 442 DLFPSLLTPCCDSETLVAIIDP 463 (534)
T ss_pred hccchhcccCCCCCceEEEECC
Confidence 775544322 2345 566665
No 424
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.87 E-value=0.049 Score=57.34 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=61.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
+.++..++|.-+|.|..+..++++.+ .++|+|+|.++.+++.|++..+. +.+++++++++..++...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~----------~g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLG----------TGRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDNFANFFEHL 85 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCC----------CCEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCCHHHHHHHH
Confidence 35678999999999999999998753 27999999999999999988764 346899999998776410
Q ss_pred -cCCCCCccEEEEc
Q 044245 143 -VDIDSRADILVSE 155 (694)
Q Consensus 143 -~~l~~~~DlIvse 155 (694)
..-..++|.|+.+
T Consensus 86 ~~~~~~~vDgIl~D 99 (305)
T TIGR00006 86 DELLVTKIDGILVD 99 (305)
T ss_pred HhcCCCcccEEEEe
Confidence 0011357777765
No 425
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.83 E-value=0.02 Score=55.75 Aligned_cols=75 Identities=7% Similarity=-0.028 Sum_probs=49.1
Q ss_pred HHHHHHhcCCCCCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 395 MAMRNALQGRVQPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 395 ~Ai~~~~~~~~~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
+.|.+-+. +++.|||+||| | +|..+..+. ..+++.+|-+ +.. +++ ..++|+ .||+++.++ .+
T Consensus 5 ~~I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid--~~~--v~~--cv~rGv-----~Viq~Dld~-gL 68 (193)
T PF07021_consen 5 QIIAEWIE--PGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEID--PDN--VAA--CVARGV-----SVIQGDLDE-GL 68 (193)
T ss_pred HHHHHHcC--CCCEEEecCCCchHHHHHHHHhc--CCeEEEEecC--HHH--HHH--HHHcCC-----CEEECCHHH-hH
Confidence 45666665 68999999999 6 777777765 4678999883 321 221 223554 588886553 23
Q ss_pred cccCCccccEEEc
Q 044245 473 DDTQQKKVDLLIG 485 (694)
Q Consensus 473 ~~l~~~~vDvivs 485 (694)
...+.+..|.+|-
T Consensus 69 ~~f~d~sFD~VIl 81 (193)
T PF07021_consen 69 ADFPDQSFDYVIL 81 (193)
T ss_pred hhCCCCCccEEeh
Confidence 3456788997776
No 426
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=95.81 E-value=0.003 Score=54.85 Aligned_cols=97 Identities=15% Similarity=0.031 Sum_probs=40.3
Q ss_pred EEecCC-chH-HHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEccc
Q 044245 410 VVADDS-VFL-TICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 410 ldig~G-giL-sl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~ 487 (694)
||+||| |.+ ..++++.. ..++++++.+ +.+...+++-...++. +..+.++-...++...+ ..++.|+|++=-
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s--~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDIS--PSMLERARERLAELGN--DNFERLRFDVLDLFDYD-PPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESS--SSTTSTTCCCHHHCT-----EEEEE--SSS---CC-C----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECC--HHHHHHHHHHhhhcCC--cceeEEEeecCChhhcc-cccccceehhhh
Confidence 799999 644 45555543 5789999994 3322222322333333 23444444333332222 135899999853
Q ss_pred cccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 488 YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 488 ~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
... .++ .+.- ..+ ++.+.|+|||.+
T Consensus 75 vl~----~l~--~~~~-~l~-~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLH----HLE--DIEA-VLR-NIYRLLKPGGIL 99 (99)
T ss_dssp TTS------S---HHH-HHH-HHTTT-TSS-EE
T ss_pred hHh----hhh--hHHH-HHH-HHHHHcCCCCCC
Confidence 111 111 2221 222 234689999975
No 427
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.67 E-value=0.053 Score=55.13 Aligned_cols=83 Identities=11% Similarity=0.080 Sum_probs=59.2
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|......+++.+||.+|-| |.|..-.-.+ |++|+|+|-. ..++.++ ++-++.-..+ ++.+|++|+.-..+.
T Consensus 49 ~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~D-prmvael-~krv~gtp~~-~kLqV~~gD~lK~d~-- 121 (315)
T KOG0820|consen 49 QIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEID-PRMVAEL-EKRVQGTPKS-GKLQVLHGDFLKTDL-- 121 (315)
T ss_pred HHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecC-cHHHHHH-HHHhcCCCcc-ceeeEEecccccCCC--
Confidence 34444445677899999999 9999888888 5899999984 4455555 4455555566 899999997554443
Q ss_pred cCCccccEEEcc-cc
Q 044245 475 TQQKKVDLLIGE-PY 488 (694)
Q Consensus 475 l~~~~vDvivsE-~~ 488 (694)
...|+.|+. ||
T Consensus 122 ---P~fd~cVsNlPy 133 (315)
T KOG0820|consen 122 ---PRFDGCVSNLPY 133 (315)
T ss_pred ---cccceeeccCCc
Confidence 346888886 44
No 428
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.67 E-value=0.06 Score=53.21 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=66.5
Q ss_pred hhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC
Q 044245 46 MLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM 125 (694)
Q Consensus 46 ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl 125 (694)
+++...-.-+|.+.|.+. +.+.|+++|.-.|.-+++.|.... ...+.++|++||++-... .++.++.+.+
T Consensus 14 i~q~P~Dm~~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~------~~~~~~~VigiDIdir~~--~~~a~e~hp~ 83 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWEL--KPDLIIETGIAHGGSLIFWASMLE------LLGGKGKVIGIDIDIRPH--NRKAIESHPM 83 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH----SEEEEE--TTSHHHHHHHHHHH------HTT---EEEEEES-GTT----S-GGGG---
T ss_pred hhcCHHHHHHHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHH------HhCCCceEEEEeCCcchh--chHHHhhccc
Confidence 456666677888888773 468999999999866665553321 001247999999953332 2233444667
Q ss_pred CCcEEEEecccccccccc---CC--CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 126 GRNIKVINKRSDELEVGV---DI--DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 126 ~~~I~vi~~~~~~l~~~~---~l--~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++|++++|++.+...-. .+ +....+|+- ++....+..+..+.. ...++++|+.+|
T Consensus 84 ~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVil---Ds~H~~~hvl~eL~~-y~plv~~G~Y~I 144 (206)
T PF04989_consen 84 SPRITFIQGDSIDPEIVDQVRELASPPHPVLVIL---DSSHTHEHVLAELEA-YAPLVSPGSYLI 144 (206)
T ss_dssp -TTEEEEES-SSSTHHHHTSGSS----SSEEEEE---SS----SSHHHHHHH-HHHT--TT-EEE
T ss_pred cCceEEEECCCCCHHHHHHHHHhhccCCceEEEE---CCCccHHHHHHHHHH-hCccCCCCCEEE
Confidence 789999999988754211 11 123446664 466666778887766 677999999875
No 429
>PRK05785 hypothetical protein; Provisional
Probab=95.64 E-value=0.081 Score=53.66 Aligned_cols=65 Identities=9% Similarity=0.018 Sum_probs=44.0
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
+..||||||| |.++...++.+ ..+|+++|. ++.+.+.+++ . .+.+++..+++. ++.+..|+|+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~--S~~Ml~~a~~---~-------~~~~~~d~~~lp---~~d~sfD~v~ 115 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDY--AENMLKMNLV---A-------DDKVVGSFEALP---FRDKSFDVVM 115 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECC--CHHHHHHHHh---c-------cceEEechhhCC---CCCCCEEEEE
Confidence 5689999999 98877777763 259999999 5654444432 1 123455555543 2357899999
Q ss_pred cc
Q 044245 485 GE 486 (694)
Q Consensus 485 sE 486 (694)
+-
T Consensus 116 ~~ 117 (226)
T PRK05785 116 SS 117 (226)
T ss_pred ec
Confidence 95
No 430
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.63 E-value=0.021 Score=57.52 Aligned_cols=79 Identities=25% Similarity=0.186 Sum_probs=48.9
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH---HcCC-----CCcEEEEecccccc
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH---VNGM-----GRNIKVINKRSDEL 139 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~---~ngl-----~~~I~vi~~~~~~l 139 (694)
.+|||.-+|-|.=++.+|..|. +|+++|.||.+..+.+.-++ ...- ..+|+++++|..++
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~------------~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC------------KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY 144 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--------------EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred CEEEECCCcchHHHHHHHccCC------------eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence 4899999999999999998874 89999999988777654332 2221 14899999998886
Q ss_pred ccccCCCCCccEEEEcccccc
Q 044245 140 EVGVDIDSRADILVSEILDSE 160 (694)
Q Consensus 140 ~~~~~l~~~~DlIvse~~~~~ 160 (694)
-. .....+|+|..+||...
T Consensus 145 L~--~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 145 LR--QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CC--CHSS--SEEEE--S---
T ss_pred Hh--hcCCCCCEEEECCCCCC
Confidence 42 22368999999998754
No 431
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.61 E-value=0.056 Score=56.11 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
...+.|.+.+...++..|+++|.| |.|+-..++.| ++|+++|. .+...+.+++.... . +++++|+++.-++
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~--d~~~~~~L~~~~~~---~-~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEI--DPDLAKHLKERFAS---N-PNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEES--SHHHHHHHHHHCTT---C-SSEEEEES-TTTS
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecC--cHhHHHHHHHHhhh---c-ccceeeecchhcc
Confidence 445556666655477899999999 99998889984 89999999 55555555554442 2 6899999988776
Q ss_pred cccccCCccccEEEcc-cccc
Q 044245 471 TMDDTQQKKVDLLIGE-PYYF 490 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE-~~~~ 490 (694)
............|||- ||+.
T Consensus 89 ~~~~~~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPYNI 109 (262)
T ss_dssp CGGGHCSSSEEEEEEEETGTG
T ss_pred ccHHhhcCCceEEEEEecccc
Confidence 6543212456678886 6644
No 432
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.56 E-value=0.043 Score=51.26 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=47.0
Q ss_pred CCCCcEEEecCC-chHHHHHHH-----cCCCceEEEcCCCcChhHHHHHHHHhccCC--cccccEEEeeccccccccccc
Q 044245 404 RVQPLCVVADDS-VFLTICVAR-----LSKTAHVLSLLPGLGDKGAQYLRTVADPNC--FSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~-----~g~a~~V~ave~~~~~~~~~~~~~i~~~N~--l~~~~i~vi~~~~~~~~~~~l 475 (694)
.+...|+|+|+| |.||++.|. .- --+|+++|.. +...+.+.+..+..+ +. .+++.+++...+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~-~~~v~~iD~~--~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 96 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSP-NLRVLGIDCN--ESLVESAQKRAQKLGSDLE-KRLSFIQGDIADESS--- 96 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCC-CCeEEEEECC--cHHHHHHHHHHHHhcchhh-ccchhhccchhhhcc---
Confidence 345689999999 999999998 42 4799999984 433344444455444 43 456666554332221
Q ss_pred CCccccEEEc
Q 044245 476 QQKKVDLLIG 485 (694)
Q Consensus 476 ~~~~vDvivs 485 (694)
....+++|+
T Consensus 97 -~~~~~~~vg 105 (141)
T PF13679_consen 97 -SDPPDILVG 105 (141)
T ss_pred -cCCCeEEEE
Confidence 345677776
No 433
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=95.46 E-value=0.17 Score=51.14 Aligned_cols=108 Identities=15% Similarity=0.033 Sum_probs=71.3
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCC------ceEEEcCCCcChhHHHHHHHHhccCCcccc-cEEEeecccccccc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKT------AHVLSLLPGLGDKGAQYLRTVADPNCFSID-RVEILQKGKKCLTM 472 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a------~~V~ave~~~~~~~~~~~~~i~~~N~l~~~-~i~vi~~~~~~~~~ 472 (694)
....++..|||+++| |-+++-..++-++ ++|+-++- ++.+-..+++=.++-++..+ ++.++.++.|++..
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di--np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF 173 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI--NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF 173 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC--CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC
Confidence 344566789999999 9888888776445 78999888 55554556655555677622 38999999998876
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+ ....|....-- |+=.|..+.- -.+++| |-|||||+++
T Consensus 174 d---d~s~D~yTiaf------GIRN~th~~k-~l~EAY-RVLKpGGrf~ 211 (296)
T KOG1540|consen 174 D---DDSFDAYTIAF------GIRNVTHIQK-ALREAY-RVLKPGGRFS 211 (296)
T ss_pred C---CCcceeEEEec------ceecCCCHHH-HHHHHH-HhcCCCcEEE
Confidence 4 46677665431 2223332211 344454 3699999665
No 434
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.43 E-value=0.06 Score=54.25 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+|-|+|||-+-++. +. ..+|+..|.- .. +=.++..|+..+++.+
T Consensus 181 ~~vIaD~GCGEakiA~---~~------------~~kV~SfDL~--------------a~--~~~V~~cDm~~vPl~d--- 226 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS---SE------------RHKVHSFDLV--------------AV--NERVIACDMRNVPLED--- 226 (325)
T ss_pred ceEEEecccchhhhhh---cc------------ccceeeeeee--------------cC--CCceeeccccCCcCcc---
Confidence 5789999999987754 11 2579999862 11 2234558888887643
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
+.+|++|..+ .+++..+...+.++ .|.|++||.+ |++-|.|.
T Consensus 227 ~svDvaV~CL---SLMgtn~~df~kEa-~RiLk~gG~l-------~IAEv~SR 268 (325)
T KOG3045|consen 227 ESVDVAVFCL---SLMGTNLADFIKEA-NRILKPGGLL-------YIAEVKSR 268 (325)
T ss_pred CcccEEEeeH---hhhcccHHHHHHHH-HHHhccCceE-------EEEehhhh
Confidence 7899988632 34556666655555 5699999865 55555554
No 435
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.26 E-value=0.066 Score=53.93 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-------------cccEEEeeccccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-------------IDRVEILQKGKKC 469 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-------------~~~i~vi~~~~~~ 469 (694)
.++..||+.||| |.=.++.|+.| -+|+++|- ++.|.+.+ .+.|++. .++|+++.++.=+
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDl--s~~Ai~~~---~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~ 108 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDL--SPTAIEQA---FEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE 108 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES---HHHHHHH---HHHCTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEec--CHHHHHHH---HHHhccCCCcccccceeeecCCceEEEEccccc
Confidence 345689999999 87777777776 58999999 77764433 3334431 1467888887655
Q ss_pred ccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 470 LTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
++.... .++|+|.==.++. .|| ..++=-|++. +.++|+|||.
T Consensus 109 l~~~~~--g~fD~iyDr~~l~----Alp-p~~R~~Ya~~-l~~ll~p~g~ 150 (218)
T PF05724_consen 109 LPPEDV--GKFDLIYDRTFLC----ALP-PEMRERYAQQ-LASLLKPGGR 150 (218)
T ss_dssp GGGSCH--HSEEEEEECSSTT----TS--GGGHHHHHHH-HHHCEEEEEE
T ss_pred CChhhc--CCceEEEEecccc----cCC-HHHHHHHHHH-HHHHhCCCCc
Confidence 554332 4688886545444 355 3454334443 2457899887
No 436
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.21 E-value=0.028 Score=57.76 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=34.2
Q ss_pred HhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHH
Q 044245 61 DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMV 113 (694)
Q Consensus 61 ~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~ 113 (694)
.+....+++|||+|||+|+.++.+.+.+. ..+...|.|...+
T Consensus 111 ~~~~~~~k~vLELgCg~~Lp~i~~~~~~~-----------~~~~fqD~na~vl 152 (282)
T KOG2920|consen 111 AQMSFSGKRVLELGCGAALPGIFAFVKGA-----------VSVHFQDFNAEVL 152 (282)
T ss_pred hheEecCceeEecCCcccccchhhhhhcc-----------ceeeeEecchhhe
Confidence 34456789999999999999999999985 5778888776555
No 437
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.20 E-value=0.098 Score=50.99 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCc---------eEEEcCCCcChhHHHHHHHHhccCCcccccEE
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTA---------HVLSLLPGLGDKGAQYLRTVADPNCFSIDRVE 461 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~---------~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~ 461 (694)
....|+.+.....++.+|+|-=|| |-+.+-||..+... ++++.+- ++.+.+.++++++..|+. +.|.
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di--~~~~v~~a~~N~~~ag~~-~~i~ 91 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDI--DPKAVRGARENLKAAGVE-DYID 91 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEES--SHHHHHHHHHHHHHTT-C-GGEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCC--CHHHHHHHHHHHHhcccC-CceE
Confidence 455566666655677899997788 66666666553222 2778888 666777889999999998 8999
Q ss_pred EeecccccccccccCCccccEEEccc-cc
Q 044245 462 ILQKGKKCLTMDDTQQKKVDLLIGEP-YY 489 (694)
Q Consensus 462 vi~~~~~~~~~~~l~~~~vDvivsE~-~~ 489 (694)
+.+.+..++.. ..+.+|+||+.| |.
T Consensus 92 ~~~~D~~~l~~---~~~~~d~IvtnPPyG 117 (179)
T PF01170_consen 92 FIQWDARELPL---PDGSVDAIVTNPPYG 117 (179)
T ss_dssp EEE--GGGGGG---TTSBSCEEEEE--ST
T ss_pred EEecchhhccc---ccCCCCEEEECcchh
Confidence 99988887772 246899999994 53
No 438
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.12 E-value=0.063 Score=54.40 Aligned_cols=82 Identities=20% Similarity=0.158 Sum_probs=52.8
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
...+...+....+|+|||||.=.+++......+ ...++|+|++..+++...+.....+...++.+ .|.
T Consensus 96 Y~~if~~~~~p~sVlDigCGlNPlalp~~~~~~----------~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v--~Dl 163 (251)
T PF07091_consen 96 YDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAP----------GATYIAYDIDSQLVEFLNAFLAVLGVPHDARV--RDL 163 (251)
T ss_dssp HHHHCCCS---SEEEEET-TTCHHHHHTTTSST----------T-EEEEEESBHHHHHHHHHHHHHTT-CEEEEE--E-T
T ss_pred HHHHHhcCCCCchhhhhhccCCceehhhcccCC----------CcEEEEEeCCHHHHHHHHHHHHhhCCCcceeE--eee
Confidence 333333344468999999999888887654432 35899999999999999999998887655554 343
Q ss_pred cccccccCCCCCccEEEE
Q 044245 137 DELEVGVDIDSRADILVS 154 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvs 154 (694)
..-. ..+..|+.+.
T Consensus 164 ~~~~----~~~~~DlaLl 177 (251)
T PF07091_consen 164 LSDP----PKEPADLALL 177 (251)
T ss_dssp TTSH----TTSEESEEEE
T ss_pred eccC----CCCCcchhhH
Confidence 2211 1256888764
No 439
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.06 E-value=0.022 Score=62.79 Aligned_cols=116 Identities=18% Similarity=0.152 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhccC----C--CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEE---cCCHHHHHHHHHHHHHc
Q 044245 53 NRAYRLAIDKMVTK----S--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTAC---ESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 53 ~~~y~~ai~~~~~~----~--~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~av---E~s~~~~~~A~~~~~~n 123 (694)
...|.+.|.+.+.. + .++||+|||+|.++..+..++- .+..+ |..+..++.| .+.
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V------------~t~s~a~~d~~~~qvqfa----leR 161 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV------------TTMSFAPNDEHEAQVQFA----LER 161 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc------------eEEEcccccCCchhhhhh----hhc
Confidence 35677777776532 3 4799999999999988887752 22222 2323334443 335
Q ss_pred CCCCcEEEEeccccccccccCCCCCccEEEEccccccccC-CChHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 124 GMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLG-EGLIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 124 gl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~-e~~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
|++.-+.++ -...+++++ ..||+|=|. .+++. ...-..++-.++|+|+|||.++-..-.+|
T Consensus 162 Gvpa~~~~~--~s~rLPfp~---~~fDmvHcs---rc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 162 GVPAMIGVL--GSQRLPFPS---NAFDMVHCS---RCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred Ccchhhhhh--ccccccCCc---cchhhhhcc---cccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 665433332 134555543 689998552 22221 00001244567889999999987666666
No 440
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.05 E-value=0.11 Score=55.03 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCCCCcEEE--ecCCchHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeec-cccc
Q 044245 393 MVMAMRNALQGRVQPLCVV--ADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQK-GKKC 469 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vld--ig~GgiLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~-~~~~ 469 (694)
+.+|+.+...-.+|..||| .|+|||| +-|.-.| .+||.++- ...+.+=++.+.+.-|++ ...++.. ++++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiL-iEagl~G--~~viG~Di--d~~mv~gak~Nl~~y~i~--~~~~~~~~Da~~ 257 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGIL-IEAGLMG--ARVIGSDI--DERMVRGAKINLEYYGIE--DYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHH-HhhhhcC--ceEeecch--HHHHHhhhhhhhhhhCcC--ceeEEEeccccc
Confidence 5667777777778889999 6777877 5555566 47889877 333334468888888874 5666666 6666
Q ss_pred ccccccCCccccEEEcccccc
Q 044245 470 LTMDDTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~~~~ 490 (694)
+. |+...+|.|+++|.|-
T Consensus 258 lp---l~~~~vdaIatDPPYG 275 (347)
T COG1041 258 LP---LRDNSVDAIATDPPYG 275 (347)
T ss_pred CC---CCCCccceEEecCCCC
Confidence 65 4444699999998764
No 441
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.01 E-value=0.091 Score=52.47 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=53.9
Q ss_pred CCcEEEecCC-chHHHHHH--HcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc-cc
Q 044245 406 QPLCVVADDS-VFLTICVA--RLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK-VD 481 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA--~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~-vD 481 (694)
++.++|||.| |+=++-.| .. ..+|+-+|+....+ ..++++.+.-|+ ++++++++++|++... .+ .|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p--~~~vtLles~~Kk~--~FL~~~~~eL~L--~nv~i~~~RaE~~~~~----~~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP--DLKVTLLESLGKKI--AFLREVKKELGL--ENVEIVHGRAEEFGQE----KKQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc--CCcEEEEccCchHH--HHHHHHHHHhCC--CCeEEehhhHhhcccc----cccCc
Confidence 4789999999 76555433 33 34599999954333 467999999999 4899999999988742 22 99
Q ss_pred EEEccc
Q 044245 482 LLIGEP 487 (694)
Q Consensus 482 vivsE~ 487 (694)
+|.|=-
T Consensus 138 ~vtsRA 143 (215)
T COG0357 138 VVTSRA 143 (215)
T ss_pred EEEeeh
Confidence 999964
No 442
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.01 E-value=0.087 Score=54.14 Aligned_cols=121 Identities=10% Similarity=0.027 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecc
Q 044245 392 SMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~ 466 (694)
.|+++|...... ...+.||.||.| |.++..+.+....++|..||- .+...+++++.... +++...|++++.++
T Consensus 61 ~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEi--D~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 61 IYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEI--DPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp HHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES---HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred HHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEec--ChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 466666544321 135789999998 877777778754689999988 56555666665543 22333699998876
Q ss_pred cccccccccCCc-cccEEEccccccCCccccCcc--hhhHHHHHhhcccccCCCceEEc
Q 044245 467 KKCLTMDDTQQK-KVDLLIGEPYYFGNDGMLPWQ--NLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 467 ~~~~~~~~l~~~-~vDvivsE~~~~~~e~~l~w~--~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
.-..-.. ..+ +.|+||...+.-. +.-+ . ...|+-.. ++.|+|||+++=
T Consensus 139 g~~~l~~--~~~~~yDvIi~D~~dp~--~~~~-~l~t~ef~~~~---~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 139 GRKFLKE--TQEEKYDVIIVDLTDPD--GPAP-NLFTREFYQLC---KRRLKPDGVLVL 189 (246)
T ss_dssp HHHHHHT--SSST-EEEEEEESSSTT--SCGG-GGSSHHHHHHH---HHHEEEEEEEEE
T ss_pred hHHHHHh--ccCCcccEEEEeCCCCC--CCcc-cccCHHHHHHH---HhhcCCCcEEEE
Confidence 5433221 134 8999999875421 2221 1 12332222 235999997653
No 443
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.98 E-value=0.22 Score=53.69 Aligned_cols=123 Identities=20% Similarity=0.153 Sum_probs=84.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
.++|.+|||+.+-.|.=+...|..-. ..+.|+|.|.|.+-+...+.++.+.|+. +..+.+.|..+++...
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMk---------n~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~ 308 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMK---------NTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKE 308 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHc---------CCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccc
Confidence 45789999999999865555554443 2479999999999999999999999986 6667777877765322
Q ss_pred CCCCCccEEEEcccccc--ccCCC-----------------hHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 144 DIDSRADILVSEILDSE--LLGEG-----------------LIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~--l~~e~-----------------~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
.+++||-|+.+-.=++ ++... +...++...-.++++||+++=..+++- +-|.+
T Consensus 309 -~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~--~~ENE 380 (460)
T KOG1122|consen 309 -FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT--VEENE 380 (460)
T ss_pred -cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc--hhhhH
Confidence 4458998887643333 33211 111233333348999999998777766 44554
No 444
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=94.93 E-value=0.13 Score=51.91 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=61.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-------------cccEEEeecccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-------------IDRVEILQKGKKCL 470 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-------------~~~i~vi~~~~~~~ 470 (694)
++..||+.||| |.=..+.|+.| . +|+++|- |+.|.+ +..+.|++. ...|+++.++.-++
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G-~-~V~GvDl--S~~Ai~---~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKG-V-KVIGIEL--SEKAVL---SFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCC-C-cEEEEec--CHHHHH---HHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 45689999999 98777778886 4 6999999 777643 333444432 24677777765544
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
....-...++|.|.==.++. .|| ..++--|++. +.++|+|||.+
T Consensus 116 ~~~~~~~~~fD~VyDra~~~----Alp-p~~R~~Y~~~-l~~lL~pgg~l 159 (226)
T PRK13256 116 PKIANNLPVFDIWYDRGAYI----ALP-NDLRTNYAKM-MLEVCSNNTQI 159 (226)
T ss_pred CccccccCCcCeeeeehhHh----cCC-HHHHHHHHHH-HHHHhCCCcEE
Confidence 32100014577754333333 456 4454334433 24578888763
No 445
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.73 E-value=0.039 Score=56.65 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC----------------C---
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM----------------G--- 126 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl----------------~--- 126 (694)
+|.++||||||+-+..+..|.... .+|+..|..+...+..++-++..+- .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f-----------~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~ 124 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF-----------EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKW 124 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE-----------EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh-----------cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchh
Confidence 467899999999766555444433 5899999999888776665543211 0
Q ss_pred --------CcEE-EEecccccccc-c--cCCCCCccEEEEccccccccCCChHHHH---HHHHHhccCCCCeEEc
Q 044245 127 --------RNIK-VINKRSDELEV-G--VDIDSRADILVSEILDSELLGEGLIPTL---QHAHDRLLVENPLTVP 186 (694)
Q Consensus 127 --------~~I~-vi~~~~~~l~~-~--~~l~~~~DlIvse~~~~~l~~e~~l~~l---~~~~~~~L~p~G~iiP 186 (694)
..|+ ++..|...... + ..+++++|+|++-..--.. -+ .++.. ...+.++|+|||.++-
T Consensus 125 ~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a-~~-d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 125 EEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESA-CK-DLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH--S-SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHH-cC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 1233 56666655331 1 1345679999873211000 11 13333 3344578999998864
No 446
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=94.66 E-value=0.14 Score=57.36 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=75.3
Q ss_pred CCCCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 404 RVQPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 404 ~~~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
.+|..|||+.+| | =-..+|+..++...|+|+|.+ +.-.+.+++.+++-|+. +|.|+..+...+.. .+ ++.+|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~--~~R~~~L~~nl~r~G~~--nv~v~~~D~~~~~~-~~-~~~fD 185 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYS--ASRVKVLHANISRCGVS--NVALTHFDGRVFGA-AL-PETFD 185 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCC--eEEEEeCchhhhhh-hc-hhhcC
Confidence 367899999998 4 445556666545699999994 33234667888888985 58888776665432 12 46799
Q ss_pred EEEccccccCCccccCcc--hhhHH--------------HHHhhcccccCCCceEEcceEEE
Q 044245 482 LLIGEPYYFGNDGMLPWQ--NLRFW--------------KERSKLDPVLSKEVIIMPFKGIL 527 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~--~l~f~--------------~~r~~~~~~L~p~g~i~P~~a~l 527 (694)
.|+-..=+++ +||+.=. ....| ..+++ -++|||||+++=+.|++
T Consensus 186 ~ILvDaPCSG-~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A-~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 186 AILLDAPCSG-EGTVRKDPDALKNWSPESNLEIAATQRELIESA-FHALKPGGTLVYSTCTL 245 (470)
T ss_pred eEEEcCCCCC-CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHH-HHHcCCCcEEEEECCCC
Confidence 9998754555 6776511 11111 11222 24799999998777764
No 447
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=94.62 E-value=0.12 Score=50.95 Aligned_cols=70 Identities=10% Similarity=-0.032 Sum_probs=43.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |.++...++.+ ...++++|. ++.+.+.+ +.+ .++++.+..++. ...++.++.|+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~--s~~~i~~a----~~~-----~~~~~~~d~~~~-l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEI--DQDGVLAC----VAR-----GVNVIQGDLDEG-LEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeC--CHHHHHHH----HHc-----CCeEEEEEhhhc-ccccCCCCcCEE
Confidence 46789999999 87766666654 457899998 55432222 222 355666654431 111334679999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
++-.
T Consensus 80 i~~~ 83 (194)
T TIGR02081 80 ILSQ 83 (194)
T ss_pred EEhh
Confidence 9964
No 448
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=94.57 E-value=0.14 Score=53.15 Aligned_cols=41 Identities=17% Similarity=-0.025 Sum_probs=29.3
Q ss_pred CCcEEEecCC-ch----HHHHHHHcCC-----CceEEEcCCCcChhHHHHHHH
Q 044245 406 QPLCVVADDS-VF----LTICVARLSK-----TAHVLSLLPGLGDKGAQYLRT 448 (694)
Q Consensus 406 ~~~vldig~G-gi----Lsl~aA~~g~-----a~~V~ave~~~~~~~~~~~~~ 448 (694)
+..|+|+||| |- |+|.+++.++ ..+|+|++. ++.+-+.|++
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Di--s~~~L~~Ar~ 150 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDI--DLKALEKARA 150 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEEC--CHHHHHHHHc
Confidence 3589999999 74 7888887642 248999999 6655455544
No 449
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=94.55 E-value=0.11 Score=54.94 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=68.6
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
...+|+|.|.|.++-.+....+ +|-+++.+.+.+..++.... .| |+-+.+++..- . .
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp------------~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-----~-P 235 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP------------HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-----T-P 235 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC------------CCceeecCHHHHHhhhhhhc-CC----cceeccccccc-----C-C
Confidence 7899999999988888887654 68889988877766665543 33 66677776542 2 2
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+.|+|+.-|+-+.+-.|+....+...++ -|.|+|+++
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~-sL~~~GkIi 272 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKK-SLPPGGKII 272 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHH-hCCCCCEEE
Confidence 5789998887766666666666666554 789988775
No 450
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.40 E-value=0.32 Score=52.80 Aligned_cols=118 Identities=22% Similarity=0.237 Sum_probs=73.5
Q ss_pred chHHHhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHH
Q 044245 41 TSYLDMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKV 119 (694)
Q Consensus 41 ~~~~~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~ 119 (694)
.....++.+..-......+..+...++.+|+-+|||+ |+++..+++..+ ..+|+++|.++.-++.|++.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~G----------a~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLG----------ASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcC----------CceEEEeCCCHHHHHHHHHh
Confidence 3445667777655444445555555566999999996 999888888765 47999999999999999863
Q ss_pred HHHcCCCCcEEEEecc-----ccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 120 LHVNGMGRNIKVINKR-----SDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 120 ~~~ngl~~~I~vi~~~-----~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
. +. +.+.....+ ..++. ....+|+++ |..+ ....+..+++ +++++|.++
T Consensus 213 ~---g~-~~~~~~~~~~~~~~~~~~t----~g~g~D~vi-e~~G-------~~~~~~~ai~-~~r~gG~v~ 266 (350)
T COG1063 213 G---GA-DVVVNPSEDDAGAEILELT----GGRGADVVI-EAVG-------SPPALDQALE-ALRPGGTVV 266 (350)
T ss_pred C---CC-eEeecCccccHHHHHHHHh----CCCCCCEEE-ECCC-------CHHHHHHHHH-HhcCCCEEE
Confidence 2 11 111111111 00111 113599987 3333 2445555554 889999875
No 451
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=94.26 E-value=0.13 Score=55.63 Aligned_cols=107 Identities=12% Similarity=0.011 Sum_probs=75.7
Q ss_pred hhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc
Q 044245 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 62 ~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~ 141 (694)
.-+.++..++|+|||.|..+...+.... .++++++.|+.-+..+.......++.++-.++.++.-..++
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~-----------~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f 174 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKK-----------AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF 174 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhcc-----------CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC
Confidence 3455677899999999999888887764 68999999998888888777777776666666666665544
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++ ..||.+-+- ..+.+.+....+...+.+.++|||..+
T Consensus 175 ed---n~fd~v~~l---d~~~~~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 175 ED---NTFDGVRFL---EVVCHAPDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred Cc---cccCcEEEE---eecccCCcHHHHHHHHhcccCCCceEE
Confidence 32 578877541 112233334455555566799999876
No 452
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.07 E-value=0.013 Score=56.83 Aligned_cols=102 Identities=25% Similarity=0.274 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.++||+|+|.|-++...+-.. .+|||.|.|..|....++. +.. .+..++ +.+ -.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f------------eevyATElS~tMr~rL~kk----~yn-Vl~~~e--w~~------t~ 167 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF------------EEVYATELSWTMRDRLKKK----NYN-VLTEIE--WLQ------TD 167 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH------------HHHHHHHhhHHHHHHHhhc----CCc-eeeehh--hhh------cC
Confidence 4789999999999998887765 3899999999998777642 331 122211 111 12
Q ss_pred CCccEEEE-ccccccccCCChHHHHHHHHHhccCC-CCeEEcCceEEEEEEec
Q 044245 147 SRADILVS-EILDSELLGEGLIPTLQHAHDRLLVE-NPLTVPCRVTTYGQLVE 197 (694)
Q Consensus 147 ~~~DlIvs-e~~~~~l~~e~~l~~l~~~~~~~L~p-~G~iiP~~~~~~~~~ve 197 (694)
-++|+|.| ++++-+. ..-.++.-+...|+| +|++|-.-.--|.--||
T Consensus 168 ~k~dli~clNlLDRc~----~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE 216 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCF----DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVE 216 (288)
T ss_pred ceeehHHHHHHHHhhc----ChHHHHHHHHHHhccCCCcEEEEEEecccceee
Confidence 47999877 3222211 122345555567777 77776544433333334
No 453
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.04 E-value=0.3 Score=49.30 Aligned_cols=99 Identities=10% Similarity=0.086 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcEEEecCCchHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 387 GEWRLSMVMAMRNALQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 387 ~~r~~~y~~Ai~~~~~~~~~~~vldig~GgiLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
+.-|.-.|.++....-.+.||.+|++|+.=+.|+.+|-.|..++|+-++- .+..-.++++.++..|++ |+.++-+
T Consensus 26 T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDi--DeRll~fI~~~a~~~gl~---i~~~~~D 100 (243)
T PF01861_consen 26 TPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDI--DERLLDFINRVAEEEGLP---IEAVHYD 100 (243)
T ss_dssp -HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S---HHHHHHHHHHHHHHT-----EEEE---
T ss_pred cHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEc--CHHHHHHHHHHHHHcCCc---eEEEEec
Confidence 33444444455555544678999999999888888888777889988888 565567788899999984 7777654
Q ss_pred cccccccccCCccccEEEccccccC
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFG 491 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~ 491 (694)
..+=-..++ .++.|++++.|=|+.
T Consensus 101 lR~~LP~~~-~~~fD~f~TDPPyT~ 124 (243)
T PF01861_consen 101 LRDPLPEEL-RGKFDVFFTDPPYTP 124 (243)
T ss_dssp TTS---TTT-SS-BSEEEE---SSH
T ss_pred ccccCCHHH-hcCCCEEEeCCCCCH
Confidence 321111122 378999999975553
No 454
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.038 Score=60.53 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=81.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc-CC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV-DI 145 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~-~l 145 (694)
+-+|||.=++||+-++..|+..+ +..+|+|-|.++..++..++|++.|+..+.++..++|..-+.... ..
T Consensus 110 ~l~vLealsAtGlrslRya~El~---------~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~ 180 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELP---------GVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMV 180 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhc---------chhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccc
Confidence 46899999999999999998875 246899999999999999999999999988888888876654311 12
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+||+|=.+++|+. ..+++..-+-++.||++.-.
T Consensus 181 ~~~FDvIDLDPyGs~-------s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 181 AKFFDVIDLDPYGSP-------SPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ccccceEecCCCCCc-------cHHHHHHHHHhhcCCEEEEE
Confidence 368999988888853 23333333467899987643
No 455
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.92 E-value=0.08 Score=48.70 Aligned_cols=82 Identities=13% Similarity=0.066 Sum_probs=56.7
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
|.+....++||.++|+||| |.||.-++-.+ +..|+.++- .+.|-+++.+++..-.+ +|.+++....+++..
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDI--dpeALEIf~rNaeEfEv---qidlLqcdildle~~-- 111 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDI--DPEALEIFTRNAEEFEV---QIDLLQCDILDLELK-- 111 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeec--CHHHHHHHhhchHHhhh---hhheeeeeccchhcc--
Confidence 4445555789999999999 99997666675 999999887 67766665544444333 467888865555442
Q ss_pred CCccccEEEccc
Q 044245 476 QQKKVDLLIGEP 487 (694)
Q Consensus 476 ~~~~vDvivsE~ 487 (694)
..-+|..|-.|
T Consensus 112 -~g~fDtaviNp 122 (185)
T KOG3420|consen 112 -GGIFDTAVINP 122 (185)
T ss_pred -CCeEeeEEecC
Confidence 35677766663
No 456
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=93.92 E-value=0.13 Score=49.03 Aligned_cols=74 Identities=16% Similarity=0.058 Sum_probs=50.1
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc-ccEEEc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK-VDLLIG 485 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~-vDvivs 485 (694)
+|+|+-+| |-=+..-|+. .++|+|+|- .+.-.++++.+++--|.+ ++|+++.++..++... +...+ +|+|..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidi--d~~~~~~a~hNa~vYGv~-~~I~~i~gD~~~~~~~-~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDI--DPERLECAKHNAEVYGVA-DNIDFICGDFFELLKR-LKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES---HHHHHHHHHHHHHTT-G-GGEEEEES-HHHHGGG-B------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEeCCHHHHHhh-ccccccccEEEE
Confidence 68998888 7777777787 489999999 666667889999999987 9999999988766432 21122 699986
Q ss_pred cc
Q 044245 486 EP 487 (694)
Q Consensus 486 E~ 487 (694)
-|
T Consensus 76 SP 77 (163)
T PF09445_consen 76 SP 77 (163)
T ss_dssp --
T ss_pred CC
Confidence 53
No 457
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.90 E-value=0.1 Score=54.55 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=52.5
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSR 148 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~ 148 (694)
+|+|+.||.|.+++-+.++|. ..|+++|.++.+++..++|.. +. ++.+|+.++... ++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-----------~~v~a~e~~~~a~~~~~~N~~-----~~--~~~~Di~~~~~~-~~~~~ 62 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-----------EIVAANEIDKSAAETYEANFP-----NK--LIEGDITKIDEK-DFIPD 62 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-----------EEEEEEeCCHHHHHHHHHhCC-----CC--CccCccccCchh-hcCCC
Confidence 689999999999999888876 578999999999888776542 11 566788777532 22357
Q ss_pred ccEEEEcc
Q 044245 149 ADILVSEI 156 (694)
Q Consensus 149 ~DlIvse~ 156 (694)
+|+++..+
T Consensus 63 ~D~l~~gp 70 (275)
T cd00315 63 IDLLTGGF 70 (275)
T ss_pred CCEEEeCC
Confidence 99998754
No 458
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.89 E-value=0.14 Score=50.87 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCCC-HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEecccccccccc
Q 044245 66 KSCHVLDIGAGTG-LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-GMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG-~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-gl~~~I~vi~~~~~~l~~~~ 143 (694)
++.+.||||.|.- +..+.-.+..+ .+.+|.|+++..++.|+.++.+| ++...|++....-.+--++.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYg-----------wrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~g 146 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYG-----------WRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNG 146 (292)
T ss_pred CceEEEeeccCcccccccccceeec-----------ceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccc
Confidence 4578999999964 33333333322 58899999999999999999999 88888887655433322211
Q ss_pred --CCCCCccEEEEccccc
Q 044245 144 --DIDSRADILVSEILDS 159 (694)
Q Consensus 144 --~l~~~~DlIvse~~~~ 159 (694)
...++||..+||+..+
T Consensus 147 iig~nE~yd~tlCNPPFh 164 (292)
T COG3129 147 IIGKNERYDATLCNPPFH 164 (292)
T ss_pred cccccceeeeEecCCCcc
Confidence 1247999999997663
No 459
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.86 E-value=0.57 Score=48.24 Aligned_cols=122 Identities=14% Similarity=0.138 Sum_probs=68.5
Q ss_pred HHHHhhccC-C-CEEEEEcCC--CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 58 LAIDKMVTK-S-CHVLDIGAG--TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 58 ~ai~~~~~~-~-~~VLDiG~G--tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
++++.+... | ...|||||| |-...-..|++.. |..+|+-+|.+|-.+..++..+..+.- .+..+++
T Consensus 58 RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~---------P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~ 127 (267)
T PF04672_consen 58 RAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA---------PDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQ 127 (267)
T ss_dssp HHHHHHHCTT---EEEEET--S--SS-HHHHHHHH----------TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE
T ss_pred HHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC---------CCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEe
Confidence 344444444 5 569999999 3333455666655 468999999999999999988876643 2589999
Q ss_pred cccccccc--c-------cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceE
Q 044245 134 KRSDELEV--G-------VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 134 ~~~~~l~~--~-------~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
+|.++... . -++.+++=+++..++. ++-.+.....+...++..|.||..++-.-.+
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh-~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLH-FVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GG-GS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeec-cCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 99987541 0 1233445566554433 3333345667778888899999988755444
No 460
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=93.85 E-value=0.47 Score=50.29 Aligned_cols=72 Identities=8% Similarity=-0.137 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHH-HHHhccCCcccccEEEeecccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYL-RTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~-~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
.+.+.|.+.+. ++..|||+||| |..+...++++. ..+|++++- |+.+-+.+ +++.+.. ..-+|+.+.++..
T Consensus 52 ~~~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDi--S~~mL~~a~~~l~~~~--p~~~v~~i~gD~~ 125 (301)
T TIGR03438 52 RHADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDI--SADALKESAAALAADY--PQLEVHGICADFT 125 (301)
T ss_pred HHHHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEEC--CHHHHHHHHHHHHhhC--CCceEEEEEEccc
Confidence 44555655553 45689999999 877766666531 268999999 55433333 3333221 2135777887654
Q ss_pred c
Q 044245 469 C 469 (694)
Q Consensus 469 ~ 469 (694)
+
T Consensus 126 ~ 126 (301)
T TIGR03438 126 Q 126 (301)
T ss_pred c
Confidence 3
No 461
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.70 E-value=0.32 Score=51.87 Aligned_cols=92 Identities=33% Similarity=0.410 Sum_probs=59.6
Q ss_pred hccCCCEEEEEcCC-CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc-ccccc
Q 044245 63 MVTKSCHVLDIGAG-TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR-SDELE 140 (694)
Q Consensus 63 ~~~~~~~VLDiG~G-tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~-~~~l~ 140 (694)
.+.+|+.|+-+|+| .|.+++.+|++-. .+|+++|.+++-++.|++. |-. .++... .....
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-----------a~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~ 224 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-----------AEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALE 224 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-----------CeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhH
Confidence 46789999999998 3466777777543 5999999999999988864 322 233333 22221
Q ss_pred cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 141 VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...+.+|+|+.-. + ...+.... +.|+++|+++
T Consensus 225 ---~~~~~~d~ii~tv--------~-~~~~~~~l-~~l~~~G~~v 256 (339)
T COG1064 225 ---AVKEIADAIIDTV--------G-PATLEPSL-KALRRGGTLV 256 (339)
T ss_pred ---HhHhhCcEEEECC--------C-hhhHHHHH-HHHhcCCEEE
Confidence 2234599998521 1 23333344 4889999886
No 462
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=93.67 E-value=0.12 Score=50.88 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCcEEEecCC-chH-HHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeec
Q 044245 388 EWRLSMVMAMRNALQGRVQPLCVVADDS-VFL-TICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQK 465 (694)
Q Consensus 388 ~r~~~y~~Ai~~~~~~~~~~~vldig~G-giL-sl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~ 465 (694)
+|+.-.+.-+.+....+. ..|+|+||| |.. -+++.|.. ...|+.++.| -+|..+.+++.. +.++.++
T Consensus 14 eRtRPa~dLla~Vp~~~~-~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS-~~Mla~Aa~rlp--------~~~f~~a 82 (257)
T COG4106 14 ERTRPARDLLARVPLERP-RRVVDLGCGPGNSTELLARRWP-DAVITGIDSS-PAMLAKAAQRLP--------DATFEEA 82 (257)
T ss_pred hccCcHHHHHhhCCcccc-ceeeecCCCCCHHHHHHHHhCC-CCeEeeccCC-HHHHHHHHHhCC--------CCceecc
Confidence 466666666666555443 479999999 754 67888886 6789999994 234333333222 3556666
Q ss_pred ccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 466 GKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 466 ~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
+..+.. +..+.|+|.+.-.+ -.|| ++..- +.| +=..|.|||.+
T Consensus 83 Dl~~w~----p~~~~dllfaNAvl----qWlp-dH~~l-l~r--L~~~L~Pgg~L 125 (257)
T COG4106 83 DLRTWK----PEQPTDLLFANAVL----QWLP-DHPEL-LPR--LVSQLAPGGVL 125 (257)
T ss_pred cHhhcC----CCCccchhhhhhhh----hhcc-ccHHH-HHH--HHHhhCCCceE
Confidence 544443 24678999987321 2355 33210 111 11258999854
No 463
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.65 E-value=0.16 Score=50.80 Aligned_cols=52 Identities=21% Similarity=0.078 Sum_probs=40.4
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 55 AYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
...+.|+..-.+|..|||--||||..+.+|.+.|. +.+++|+++..++.|++
T Consensus 180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R------------~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR------------RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-------------EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhhhccceeeehhhhccChHHHHHHHcCC------------eEEEEeCCHHHHHHhcC
Confidence 34455555556799999999999999999988874 89999999999999874
No 464
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.62 E-value=0.3 Score=47.62 Aligned_cols=62 Identities=23% Similarity=0.223 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC------CCCcEEEEecccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG------MGRNIKVINKRSD 137 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng------l~~~I~vi~~~~~ 137 (694)
+..-..|||||-|.|.+.++-..+ +..+.|.|+--...++.+.++.+.+ .-.+|.++..+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fP----------dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~nam 127 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFP----------DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAM 127 (249)
T ss_pred ccceEEeeccCccchhhhccccCc----------cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccch
Confidence 456789999999999999988875 6789999998888999998887654 1136666665543
No 465
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.59 E-value=0.63 Score=48.43 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhh---ccC------CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 48 NDSYRNRAYRLAIDKM---VTK------SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 48 ~D~~r~~~y~~ai~~~---~~~------~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
.-.+|...|...|... ..+ ...||-=|||.|.|+.-+|..|. ++-|-|.|--|+-+..-
T Consensus 123 ~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~------------~~qGNEfSy~Mli~S~F 190 (369)
T KOG2798|consen 123 GQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF------------KCQGNEFSYFMLICSSF 190 (369)
T ss_pred cchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc------------cccccHHHHHHHHHHHH
Confidence 4467777887777653 222 46799999999999999999986 55556887777765544
Q ss_pred HH
Q 044245 119 VL 120 (694)
Q Consensus 119 ~~ 120 (694)
.+
T Consensus 191 iL 192 (369)
T KOG2798|consen 191 IL 192 (369)
T ss_pred HH
Confidence 44
No 466
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.46 E-value=0.2 Score=49.97 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=61.6
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.++++.+||-+|+++|.---..+..-. +.+-|||+|.+...=...-..++ .-+ ||.-|-.|++...-.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVG---------peG~VYAVEfs~rsGRdL~nmAk--kRt-NiiPIiEDArhP~KY 220 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVG---------PEGCVYAVEFSHRSGRDLINMAK--KRT-NIIPIIEDARHPAKY 220 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccC---------CCceEEEEEecccchHHHHHHhh--ccC-CceeeeccCCCchhe
Confidence 367899999999999976544444433 46789999998754332221221 122 455555566542211
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.-+-.-+|+|+++.-. .+....+.-..+.+|++||-++-
T Consensus 221 RmlVgmVDvIFaDvaq-----pdq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 221 RMLVGMVDVIFADVAQ-----PDQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred eeeeeeEEEEeccCCC-----chhhhhhhhhhhhhhccCCeEEE
Confidence 1112347888875322 22223333334579999998764
No 467
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.34 E-value=0.055 Score=58.14 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=58.9
Q ss_pred HHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCc-EEEEeccccc
Q 044245 60 IDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN-IKVINKRSDE 138 (694)
Q Consensus 60 i~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~-I~vi~~~~~~ 138 (694)
+.....+|..|-|+-||-|.+++.|++.+ ++|+|-|.|+++++..+.+++.|.+... |++++.+..+
T Consensus 243 lsg~fk~gevv~D~FaGvGPfa~Pa~kK~------------crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 243 LSGLFKPGEVVCDVFAGVGPFALPAAKKG------------CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred HhhccCCcchhhhhhcCcCccccchhhcC------------cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 33456779999999999999999999987 5999999999999999999999988766 8888877665
Q ss_pred c
Q 044245 139 L 139 (694)
Q Consensus 139 l 139 (694)
.
T Consensus 311 F 311 (495)
T KOG2078|consen 311 F 311 (495)
T ss_pred H
Confidence 4
No 468
>PRK11524 putative methyltransferase; Provisional
Probab=93.31 E-value=0.24 Score=52.08 Aligned_cols=54 Identities=20% Similarity=0.035 Sum_probs=45.4
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV 122 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ 122 (694)
.+.|...-.+|+.|||--+|||.-+++|.+.|. +.+|+|++++-++.|++++..
T Consensus 199 erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR------------~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 199 KRIILASSNPGDIVLDPFAGSFTTGAVAKASGR------------KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC------------CEEEEeCCHHHHHHHHHHHHh
Confidence 344444446799999999999999999988874 899999999999999998753
No 469
>PRK13699 putative methylase; Provisional
Probab=93.24 E-value=0.28 Score=49.73 Aligned_cols=58 Identities=17% Similarity=0.096 Sum_probs=47.5
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
+...+.|...-.+|..|||--||||..++.+.+.|. +.+|+|+++.-.+.|.++++..
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r------------~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR------------RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC------------CEEEEecCHHHHHHHHHHHHHH
Confidence 344555555556799999999999999999888874 8999999999999999888653
No 470
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.86 E-value=0.16 Score=53.09 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=34.2
Q ss_pred CCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHH
Q 044245 405 VQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRT 448 (694)
Q Consensus 405 ~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~ 448 (694)
+|..||++|+| |++.+++||+=||++|+.+|. ++.-.++|++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~--~~~Rle~Ak~ 212 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL--VANRLELAKK 212 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec--CHHHHHHHHH
Confidence 67899999999 999999999866999999999 5543344443
No 471
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=92.85 E-value=0.92 Score=47.04 Aligned_cols=117 Identities=12% Similarity=-0.027 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-c--hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-V--FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-g--iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
.++||.+....-+...||||-+| | +|-........+..|.-.|= ++...+..++.++++||+ +.+++.+++.-+
T Consensus 123 i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDy--s~~Nv~~g~~li~~~gL~-~i~~f~~~dAfd 199 (311)
T PF12147_consen 123 IRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDY--SPINVEKGRALIAERGLE-DIARFEQGDAFD 199 (311)
T ss_pred HHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeC--CHHHHHHHHHHHHHcCCc-cceEEEecCCCC
Confidence 34444444332234578999999 5 66555544322456666666 677667789999999998 888999987543
Q ss_pred ccc-cccCCccccEEEccccccCCccccCcchhhHHHHHh---hcccccCCCceEE
Q 044245 470 LTM-DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERS---KLDPVLSKEVIIM 521 (694)
Q Consensus 470 ~~~-~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~---~~~~~L~p~g~i~ 521 (694)
-.. ..+ ..+++++|.-+.|.+ ++ ++= ..+. -+...+.|||.+|
T Consensus 200 ~~~l~~l-~p~P~l~iVsGL~El----F~-Dn~---lv~~sl~gl~~al~pgG~lI 246 (311)
T PF12147_consen 200 RDSLAAL-DPAPTLAIVSGLYEL----FP-DND---LVRRSLAGLARALEPGGYLI 246 (311)
T ss_pred HhHhhcc-CCCCCEEEEecchhh----CC-cHH---HHHHHHHHHHHHhCCCcEEE
Confidence 221 122 235677777654442 22 221 1111 1223588988765
No 472
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=92.85 E-value=0.55 Score=46.77 Aligned_cols=86 Identities=5% Similarity=-0.088 Sum_probs=43.0
Q ss_pred HHhcCCCCCcEEEecCC-chHHH-HHHHcCCCceEEEcCCCcChhHHHHHH-------HHhccCCcccccEEEeeccccc
Q 044245 399 NALQGRVQPLCVVADDS-VFLTI-CVARLSKTAHVLSLLPGLGDKGAQYLR-------TVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 399 ~~~~~~~~~~vldig~G-giLsl-~aA~~g~a~~V~ave~~~~~~~~~~~~-------~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
+.....++.+.+|||+| |=+-+ .|++.| +++++.||- .+....+++ +.++..|....+|++++++.-+
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi--~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEI--LPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE---SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEe--chHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 33444467799999999 85444 455665 999999998 554444433 3344455544688888875432
Q ss_pred ccccccCCccccEEEccc
Q 044245 470 LTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~ 487 (694)
-...+..-..+|+|..--
T Consensus 113 ~~~~~~~~s~AdvVf~Nn 130 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNN 130 (205)
T ss_dssp HHHHHHHGHC-SEEEE--
T ss_pred cHhHhhhhcCCCEEEEec
Confidence 211111124578888753
No 473
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.79 E-value=0.72 Score=48.02 Aligned_cols=81 Identities=11% Similarity=0.042 Sum_probs=62.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
+.++...+|.--|.|..|..+.+.++ +.++++|+|.++.+++.|++....++ +++++++++..++...
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~---------~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLP---------DLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEAL 89 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCC---------CCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHH
Confidence 55679999999999999999988875 24689999999999999999888765 6999999987776421
Q ss_pred -cCCCCCccEEEEc
Q 044245 143 -VDIDSRADILVSE 155 (694)
Q Consensus 143 -~~l~~~~DlIvse 155 (694)
..-.+++|-|+.+
T Consensus 90 ~~~~i~~vDGiL~D 103 (314)
T COG0275 90 KELGIGKVDGILLD 103 (314)
T ss_pred HhcCCCceeEEEEe
Confidence 0012466766654
No 474
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.77 E-value=0.36 Score=47.91 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=79.2
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
|.+.+. .+..+.|||+= +.|+..+.+-+-++.++|.|-...+. +.|.+.+++|++. ++|+|-.++- +. .+
T Consensus 10 va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl--~~a~~~v~~~~l~-~~i~vr~~dg--l~--~l 80 (226)
T COG2384 10 VANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL--ESAIRNVKKNNLS-ERIDVRLGDG--LA--VL 80 (226)
T ss_pred HHHHHH--cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH--HHHHHHHHhcCCc-ceEEEeccCC--cc--cc
Confidence 444443 34458999988 99999999987799999999854554 4567889999998 9999987753 22 22
Q ss_pred C-CccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccCh
Q 044245 476 Q-QKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCP 535 (694)
Q Consensus 476 ~-~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~ 535 (694)
. ..++|++|==+ |-. . .-++ .|..|...+|..-++-++|....
T Consensus 81 ~~~d~~d~ivIAG-------MGG-~-----lI~~----ILee~~~~l~~~~rlILQPn~~~ 124 (226)
T COG2384 81 ELEDEIDVIVIAG-------MGG-T-----LIRE----ILEEGKEKLKGVERLILQPNIHT 124 (226)
T ss_pred CccCCcCEEEEeC-------CcH-H-----HHHH----HHHHhhhhhcCcceEEECCCCCH
Confidence 2 23688877654 222 1 1112 36777778888888889998755
No 475
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=92.74 E-value=0.15 Score=50.45 Aligned_cols=87 Identities=10% Similarity=0.003 Sum_probs=54.5
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.++|||||=+...... +.+ --.|++||.++. .-.+.+.|.-+.+++..-.+
T Consensus 53 lrlLEVGals~~N~~s--~~~-----------~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e 103 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG-----------WFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESE 103 (219)
T ss_pred ceEEeecccCCCCccc--ccC-----------ceeeEEeecCCC----------------CCCceeeccccCCCCCCccc
Confidence 5899999886543222 222 246999998641 12245667777666544457
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCe
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPL 183 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ 183 (694)
+||+|++-++-.++-.....-.+.....++|+|+|.
T Consensus 104 ~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 104 KFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred ceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 999999866555543222223455555679999998
No 476
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=92.62 E-value=0.76 Score=46.94 Aligned_cols=90 Identities=11% Similarity=-0.049 Sum_probs=49.3
Q ss_pred CCCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 405 VQPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
+...+||||+| | +..-| |.. -++|||-|. |..++.. .+.-|+ +|+... +... .+.+.|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l-~~~--f~~v~aTE~--S~~Mr~r----L~~kg~-----~vl~~~--~w~~---~~~~fDv 154 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERL-APL--FKEVYATEA--SPPMRWR----LSKKGF-----TVLDID--DWQQ---TDFKFDV 154 (265)
T ss_pred cCCceEEecCCCcHHHHHH-Hhh--cceEEeecC--CHHHHHH----HHhCCC-----eEEehh--hhhc---cCCceEE
Confidence 34679999999 5 55555 455 578999999 6665432 334444 444321 1221 1357899
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|.+= ++|+-..-..-..++.+ ..|+|+|+++
T Consensus 155 IscL-------NvLDRc~~P~~LL~~i~-~~l~p~G~li 185 (265)
T PF05219_consen 155 ISCL-------NVLDRCDRPLTLLRDIR-RALKPNGRLI 185 (265)
T ss_pred Eeeh-------hhhhccCCHHHHHHHHH-HHhCCCCEEE
Confidence 8662 23331111111233332 2589998765
No 477
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=92.58 E-value=0.23 Score=52.77 Aligned_cols=68 Identities=19% Similarity=0.100 Sum_probs=48.4
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+|..|||||++ |=.+..+++.| + +|+||+. .+++.. +... .+|+.+++..-.... ..+.+|+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG-~-~V~AVD~--g~l~~~----L~~~-----~~V~h~~~d~fr~~p---~~~~vDw 273 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG-M-FVTAVDN--GPMAQS----LMDT-----GQVEHLRADGFKFRP---PRKNVDW 273 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC-C-EEEEEec--hhcCHh----hhCC-----CCEEEEeccCcccCC---CCCCCCE
Confidence 468899999999 77788888886 6 9999998 565432 2222 578888765332221 1578999
Q ss_pred EEccc
Q 044245 483 LIGEP 487 (694)
Q Consensus 483 ivsE~ 487 (694)
+||..
T Consensus 274 vVcDm 278 (357)
T PRK11760 274 LVCDM 278 (357)
T ss_pred EEEec
Confidence 99975
No 478
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=92.39 E-value=0.19 Score=50.35 Aligned_cols=35 Identities=9% Similarity=-0.109 Sum_probs=27.7
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHH
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYL 446 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~ 446 (694)
..+|+||| |.-+..+|.. -++|+|++. ++.+-++|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~--~k~VIatD~--s~~mL~~a 71 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH--YKEVIATDV--SEAMLKVA 71 (261)
T ss_pred eEEEeccCCCcchHHHHHh--hhhheeecC--CHHHHHHh
Confidence 78999999 9777888887 799999999 55443443
No 479
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.05 E-value=0.34 Score=52.55 Aligned_cols=57 Identities=21% Similarity=0.106 Sum_probs=41.5
Q ss_pred hhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCC
Q 044245 378 PERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLP 436 (694)
Q Consensus 378 r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~ 436 (694)
.....+|.|.-=+..+-.|...... ++..|+++|+| |||+..+||..||++|++++.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~--~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~ 201 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVR--PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDR 201 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCC--CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 4456777777766533324444443 34489999999 999999999767999999988
No 480
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=91.92 E-value=0.16 Score=53.23 Aligned_cols=83 Identities=20% Similarity=0.150 Sum_probs=63.0
Q ss_pred hhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHH-------HHHHHHHHcCCCC-cEEEEe
Q 044245 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVK-------LMKKVLHVNGMGR-NIKVIN 133 (694)
Q Consensus 62 ~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~-------~A~~~~~~ngl~~-~I~vi~ 133 (694)
..+.+|+.|+|=-.|||.+.+.+|+-|+ .|+|.|++-.|+. ..+.|.++.|.+. -+.++.
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa------------~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~ 271 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA------------YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT 271 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc------------eeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence 3477899999999999999999999987 9999999988876 2455666667432 355677
Q ss_pred ccccccccccCCCCCccEEEEcccc
Q 044245 134 KRSDELEVGVDIDSRADILVSEILD 158 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~ 158 (694)
+|...-..-. ...||.|||++.+
T Consensus 272 ~D~sn~~~rs--n~~fDaIvcDPPY 294 (421)
T KOG2671|consen 272 ADFSNPPLRS--NLKFDAIVCDPPY 294 (421)
T ss_pred ecccCcchhh--cceeeEEEeCCCc
Confidence 7776644322 3589999999765
No 481
>PRK04148 hypothetical protein; Provisional
Probab=91.50 E-value=0.55 Score=43.28 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-ch-HHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VF-LTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-gi-Lsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
....|.++....+++.|+|||+| |. ++...++.| ..|+|++- ++.+.+. ++.++ +.++.++ +
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi--~~~aV~~----a~~~~-----~~~v~dD---l 67 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDI--NEKAVEK----AKKLG-----LNAFVDD---L 67 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEEC--CHHHHHH----HHHhC-----CeEEECc---C
Confidence 34456666655456789999999 86 888888886 69999999 6654433 33333 3455553 3
Q ss_pred cccccC-CccccEEEc
Q 044245 471 TMDDTQ-QKKVDLLIG 485 (694)
Q Consensus 471 ~~~~l~-~~~vDvivs 485 (694)
...++. =+.+|+|-|
T Consensus 68 f~p~~~~y~~a~liys 83 (134)
T PRK04148 68 FNPNLEIYKNAKLIYS 83 (134)
T ss_pred CCCCHHHHhcCCEEEE
Confidence 222221 255788876
No 482
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.31 E-value=0.88 Score=51.64 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc--c
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG--V 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~--~ 143 (694)
+..+|+|--||||.+-..+++...... ....++|.|+++....+|+.+.-.+|+...+.+.+++...-+.. .
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~------~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~ 259 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQ------DEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDK 259 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhc------cceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCccccc
Confidence 457899999999988777776653110 02579999999999999999999998864455555554332211 1
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
+..++||.|++++..+
T Consensus 260 ~~~~~~D~viaNPPf~ 275 (489)
T COG0286 260 DDKGKFDFVIANPPFS 275 (489)
T ss_pred CCccceeEEEeCCCCC
Confidence 2346899999998765
No 483
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=91.31 E-value=0.38 Score=50.74 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=54.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
..++...+|.--|.|..|..+.++.+ .++|+|+|.++.+++.|++++.. ..+++.+++++..++...
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~----------~~~li~~DrD~~a~~~a~~~l~~--~~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLP----------NGRLIGIDRDPEALERAKERLKK--FDDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-T----------T-EEEEEES-HHHHHHHHCCTCC--CCTTEEEEES-GGGHHHHH
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCC----------CCeEEEecCCHHHHHHHHHHHhh--ccceEEEEeccHHHHHHHH
Confidence 45678999999999999999998765 37999999999999999876653 357999999998776511
Q ss_pred -cC-CCCCccEEEEc
Q 044245 143 -VD-IDSRADILVSE 155 (694)
Q Consensus 143 -~~-l~~~~DlIvse 155 (694)
.. ...++|.|+.+
T Consensus 86 ~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 86 KELNGINKVDGILFD 100 (310)
T ss_dssp HHTTTTS-EEEEEEE
T ss_pred HHccCCCccCEEEEc
Confidence 11 12467777765
No 484
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=91.15 E-value=0.97 Score=45.49 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=30.1
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCC
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLP 436 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~ 436 (694)
..|+++.||||||- |+|++..|+.-|++.|..++-
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDI 90 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDI 90 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeec
Confidence 45778899999998 999999999756999998876
No 485
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=91.13 E-value=1.9 Score=44.19 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=68.1
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcC-CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLS-KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g-~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
|..-..-.+|.+|+.-|+| |=||.+.||+- -..|||..|-+ ...+.+ +.+=.+..|+. |+++|++.++-.-....
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH-~~Ra~k-a~eeFr~hgi~-~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFH-ETRAEK-ALEEFREHGIG-DNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEec-HHHHHH-HHHHHHHhCCC-cceEEEEeecccCCccc
Confidence 5555566789999999999 89999999972 24699999884 223333 34446778898 99999998765443321
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHH
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWK 505 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~ 505 (694)
...++|.|.-.. --||..+.+++
T Consensus 174 -ks~~aDaVFLDl-------PaPw~AiPha~ 196 (314)
T KOG2915|consen 174 -KSLKADAVFLDL-------PAPWEAIPHAA 196 (314)
T ss_pred -cccccceEEEcC-------CChhhhhhhhH
Confidence 135788886653 46888876433
No 486
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.98 E-value=0.4 Score=50.23 Aligned_cols=45 Identities=40% Similarity=0.536 Sum_probs=40.9
Q ss_pred ccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 64 VTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 64 ~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
++.|.+||-+|+|. |++++.+||+.+ +.+|+.+|.++.-++.||+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G----------A~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG----------ASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC----------CCcEEEeecCHHHHHHHHH
Confidence 67799999999995 999999999976 4799999999999999987
No 487
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=90.95 E-value=0.87 Score=47.96 Aligned_cols=77 Identities=9% Similarity=0.000 Sum_probs=54.3
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC--Ccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ--QKK 479 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~--~~~ 479 (694)
.++.+++|.++| |--|...++..+ ..+||+++. .+.|.+.+++.++. . ++|+++++...++... +. ...
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~--D~~al~~ak~~L~~---~-~ri~~i~~~f~~l~~~-l~~~~~~ 90 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDR--DPDAIAAAKDRLKP---F-GRFTLVHGNFSNLKEV-LAEGLGK 90 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcC--CHHHHHHHHHhhcc---C-CcEEEEeCCHHHHHHH-HHcCCCc
Confidence 356799999999 666666666532 468999999 77776777665544 3 7999999988776421 21 127
Q ss_pred ccEEEccc
Q 044245 480 VDLLIGEP 487 (694)
Q Consensus 480 vDvivsE~ 487 (694)
+|.|+...
T Consensus 91 vDgIl~DL 98 (296)
T PRK00050 91 VDGILLDL 98 (296)
T ss_pred cCEEEECC
Confidence 99998863
No 488
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=90.83 E-value=2 Score=47.61 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=75.4
Q ss_pred HhhccCCC-EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccc
Q 044245 61 DKMVTKSC-HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDEL 139 (694)
Q Consensus 61 ~~~~~~~~-~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l 139 (694)
.+.+.+.. ++|-+|||.--++....+.|- ..|+.+|.|+..++.+...-.. . ..-+.+...++..+
T Consensus 42 ~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~-----------~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l 108 (482)
T KOG2352|consen 42 MKYLSPSDFKILQLGCGNSELSEHLYKNGF-----------EDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQL 108 (482)
T ss_pred HHhhchhhceeEeecCCCCHHHHHHHhcCC-----------CCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhc
Confidence 34455555 999999999999999888875 6899999999887776543321 1 23578888888888
Q ss_pred ccccCCCCCccEEEEcccccccc-CCCh------HHHHHHHHHhccCCCCeEE
Q 044245 140 EVGVDIDSRADILVSEILDSELL-GEGL------IPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 140 ~~~~~l~~~~DlIvse~~~~~l~-~e~~------l~~l~~~~~~~L~p~G~ii 185 (694)
.+++ +.||+++-..-...++ +|.. ....+....++|++||+.+
T Consensus 109 ~fed---ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 109 VFED---ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred cCCC---cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 7654 7899998755333333 2222 2234445567899999864
No 489
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=90.69 E-value=0.59 Score=47.75 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
|+.|+-+|-- -+.|++++-.+- ..+|..+|+++..+...++.++..|+. +|+.+.-|.+.- ++.++.
T Consensus 153 gK~I~vvGDD-DLtsia~aLt~m----------pk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~p-lpe~~~ 219 (354)
T COG1568 153 GKEIFVVGDD-DLTSIALALTGM----------PKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNP-LPEDLK 219 (354)
T ss_pred CCeEEEEcCc-hhhHHHHHhcCC----------CceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhccc-ChHHHH
Confidence 6789999944 477777776664 368999999999999999999999985 688888787763 345666
Q ss_pred CCccEEEEcccc
Q 044245 147 SRADILVSEILD 158 (694)
Q Consensus 147 ~~~DlIvse~~~ 158 (694)
++||+++++|..
T Consensus 220 ~kFDvfiTDPpe 231 (354)
T COG1568 220 RKFDVFITDPPE 231 (354)
T ss_pred hhCCeeecCchh
Confidence 899999998654
No 490
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=90.67 E-value=0.1 Score=53.67 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=65.7
Q ss_pred CcEEEecCC-chHHH-HHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 407 PLCVVADDS-VFLTI-CVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 407 ~~vldig~G-giLsl-~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
-+|+|+=+| |...| |..+|| |+.|+|+|= .+.+.+.+++.++.|+.. ++..++++....... ...+|-|
T Consensus 196 eviVDLYAGIGYFTlpflV~ag-Ak~V~A~Ew--Np~svEaLrR~~~~N~V~-~r~~i~~gd~R~~~~----~~~AdrV- 266 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAG-AKTVFACEW--NPWSVEALRRNAEANNVM-DRCRITEGDNRNPKP----RLRADRV- 266 (351)
T ss_pred chhhhhhcccceEEeehhhccC-ccEEEEEec--CHHHHHHHHHHHHhcchH-HHHHhhhccccccCc----cccchhe-
Confidence 467888889 88888 888996 999999999 898888999999999998 888888886443322 1234443
Q ss_pred ccccccCCccccCcchhhHHHHHhhcccccCCCc
Q 044245 485 GEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEV 518 (694)
Q Consensus 485 sE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g 518 (694)
++ |||| +.=.=|..--+ .|+|.|
T Consensus 267 ----nL---GLlP-Sse~~W~~A~k---~Lk~eg 289 (351)
T KOG1227|consen 267 ----NL---GLLP-SSEQGWPTAIK---ALKPEG 289 (351)
T ss_pred ----ee---cccc-ccccchHHHHH---HhhhcC
Confidence 23 6788 65444443333 367644
No 491
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=90.55 E-value=0.077 Score=46.66 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=25.9
Q ss_pred CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEccc
Q 044245 428 TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 428 a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~ 487 (694)
..++++++.. +. .+-.+++++..+++ ++++++++.+.+.-. .++.+++|+|.-..
T Consensus 23 ~~~~~~vD~~--~~-~~~~~~~~~~~~~~-~~~~~~~g~s~~~l~-~~~~~~~dli~iDg 77 (106)
T PF13578_consen 23 RGKLYSVDPF--PG-DEQAQEIIKKAGLS-DRVEFIQGDSPDFLP-SLPDGPIDLIFIDG 77 (106)
T ss_dssp ----EEEESS---------------GGG--BTEEEEES-THHHHH-HHHH--EEEEEEES
T ss_pred cCCEEEEECC--Cc-ccccchhhhhcCCC-CeEEEEEcCcHHHHH-HcCCCCEEEEEECC
Confidence 3589999993 32 11235566767887 899999998876522 33346788887664
No 492
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=90.29 E-value=1.2 Score=44.05 Aligned_cols=111 Identities=11% Similarity=0.071 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCc-ccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCF-SIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l-~~~~i~vi~~~~~~~ 470 (694)
|-.|..+++.. +|.+||.||-| ||..-+.-++- ..+=+-+|+ .+-. .++ ++.+|. +.++|.++.|+=+++
T Consensus 90 iMha~A~ai~t-kggrvLnVGFGMgIidT~iQe~~-p~~H~IiE~--hp~V---~kr-mr~~gw~ek~nViil~g~WeDv 161 (271)
T KOG1709|consen 90 IMHALAEAIST-KGGRVLNVGFGMGIIDTFIQEAP-PDEHWIIEA--HPDV---LKR-MRDWGWREKENVIILEGRWEDV 161 (271)
T ss_pred HHHHHHHHHhh-CCceEEEeccchHHHHHHHhhcC-CcceEEEec--CHHH---HHH-HHhcccccccceEEEecchHhh
Confidence 33344444433 67799999999 99887776663 555567888 5532 222 455664 347888899876665
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
- +.|+.+-.|-|.=..|-.++|-+.. | .+..-++|||+|..
T Consensus 162 l-~~L~d~~FDGI~yDTy~e~yEdl~~-----~---hqh~~rLLkP~gv~ 202 (271)
T KOG1709|consen 162 L-NTLPDKHFDGIYYDTYSELYEDLRH-----F---HQHVVRLLKPEGVF 202 (271)
T ss_pred h-ccccccCcceeEeechhhHHHHHHH-----H---HHHHhhhcCCCceE
Confidence 3 3565666888876654333222111 1 11223589999854
No 493
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.07 E-value=1.5 Score=47.26 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=54.3
Q ss_pred ccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 64 VTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
..++.+||-.|+|. |.+++.+|++.. ..+|++++.++.-++.|++ .|.. . ++..+..++..-
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G----------~~~Vi~~~~~~~~~~~a~~----lGa~-~--vi~~~~~~~~~~ 229 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLG----------AAEIVCADVSPRSLSLARE----MGAD-K--LVNPQNDDLDHY 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEEeCCHHHHHHHHH----cCCc-E--EecCCcccHHHH
Confidence 44688999999863 566666666643 2479999999888777764 3432 1 222111111100
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
....+.+|+++- ..+. ...+..+. ++|+++|+++
T Consensus 230 ~~~~g~~D~vid-~~G~-------~~~~~~~~-~~l~~~G~iv 263 (343)
T PRK09880 230 KAEKGYFDVSFE-VSGH-------PSSINTCL-EVTRAKGVMV 263 (343)
T ss_pred hccCCCCCEEEE-CCCC-------HHHHHHHH-HHhhcCCEEE
Confidence 011135898874 2331 22333344 4789999886
No 494
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.98 E-value=0.39 Score=53.29 Aligned_cols=113 Identities=16% Similarity=0.070 Sum_probs=64.5
Q ss_pred HHHHHHHHhhccCC--CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 54 RAYRLAIDKMVTKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 54 ~~y~~ai~~~~~~~--~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
..|.+.+...+..+ ..|+|+.+|.|.++..+... .|+....-+..-.-.-.++-..|+- -+
T Consensus 351 ~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~--------------~VWVMNVVP~~~~ntL~vIydRGLI---G~ 413 (506)
T PF03141_consen 351 SHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDD--------------PVWVMNVVPVSGPNTLPVIYDRGLI---GV 413 (506)
T ss_pred HHHHHhhcccccccceeeeeeecccccHHHHHhccC--------------CceEEEecccCCCCcchhhhhcccc---hh
Confidence 34444444334444 57999999999987776543 2444333222111111233344552 22
Q ss_pred Eeccccc-cccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 132 INKRSDE-LEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 132 i~~~~~~-l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+ |+.+ ++ --|..||+|=++-+.+.....-.+..++-..+|.|+|+|.++-+
T Consensus 414 yh-DWCE~fs---TYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 414 YH-DWCEAFS---TYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred cc-chhhccC---CCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 22 4333 22 23578999987655544444334667777889999999998754
No 495
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=89.86 E-value=0.42 Score=50.85 Aligned_cols=68 Identities=24% Similarity=0.223 Sum_probs=52.1
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSR 148 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~ 148 (694)
+|+|+-||.|.+++-+.++|. ..|.|+|+++.+++.-+.|.. .+..+|+.++... ++++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~-----------~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~-~l~~~ 61 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF-----------EVVWAVEIDPDACETYKANFP--------EVICGDITEIDPS-DLPKD 61 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE-----------EEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHH-HHHHT
T ss_pred cEEEEccCccHHHHHHHhcCc-----------EEEEEeecCHHHHHhhhhccc--------ccccccccccccc-ccccc
Confidence 689999999999999999985 579999999998888776653 6778898887642 34435
Q ss_pred ccEEEEcc
Q 044245 149 ADILVSEI 156 (694)
Q Consensus 149 ~DlIvse~ 156 (694)
+|+++.-+
T Consensus 62 ~D~l~ggp 69 (335)
T PF00145_consen 62 VDLLIGGP 69 (335)
T ss_dssp -SEEEEE-
T ss_pred ceEEEecc
Confidence 99998754
No 496
>PRK00536 speE spermidine synthase; Provisional
Probab=89.50 E-value=1.3 Score=45.71 Aligned_cols=117 Identities=12% Similarity=-0.012 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecc
Q 044245 392 SMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~ 466 (694)
.|+..|.+-.-. ...+.||.||.| |-..--..|+. .+|.-||- .+...+++++..-. .+++--|++++..
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeI--D~~Vv~~~k~~lP~~~~~~~DpRv~l~~~- 131 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD--THVDFVQA--DEKILDSFISFFPHFHEVKNNKNFTHAKQ- 131 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcC--CeeEEEEC--CHHHHHHHHHHCHHHHHhhcCCCEEEeeh-
Confidence 466666544321 134789999999 88888888984 58988877 34333444441111 2454368888862
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACA 531 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~ 531 (694)
+. +...++.||||....|. . .| | +. ..+.|+|||+++=.....+..+
T Consensus 132 ---~~--~~~~~~fDVIIvDs~~~--------~--~f-y-~~-~~~~L~~~Gi~v~Qs~sp~~~~ 178 (262)
T PRK00536 132 ---LL--DLDIKKYDLIICLQEPD--------I--HK-I-DG-LKRMLKEDGVFISVAKHPLLEH 178 (262)
T ss_pred ---hh--hccCCcCCEEEEcCCCC--------h--HH-H-HH-HHHhcCCCcEEEECCCCcccCH
Confidence 21 11237899999984222 1 22 2 11 2346999999988877666543
No 497
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=89.27 E-value=1.7 Score=42.36 Aligned_cols=128 Identities=17% Similarity=0.147 Sum_probs=75.8
Q ss_pred HHHhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHH----HH--HH
Q 044245 43 YLDMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPM----VK--LM 116 (694)
Q Consensus 43 ~~~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~----~~--~A 116 (694)
-.+|..|..|.-. +-..---+.++.+|.|+--|.|.++..++.+-+ +.+.||+.=.++.. .. ..
T Consensus 26 aad~~rD~~Rhp~-E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vg---------p~G~Vy~~~p~e~~~~~~~~~~r~ 95 (238)
T COG4798 26 AADMARDKARHPG-EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVG---------PKGKVYAYVPAELTKFAKREGPRL 95 (238)
T ss_pred HHHhhhhhccCcc-ceeEEeccCCCCEEEEEecCCccHhhhhchhcC---------CceeEEEecchhhcccccchhhhh
Confidence 4566666665431 111112367899999999999999999998876 35788886543321 11 11
Q ss_pred HHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEcccccc----ccCCChHHHHHHHHHhccCCCCeEE
Q 044245 117 KKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSE----LLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 117 ~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~----l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+...++.... |++++.+....+. .+++.|++.....+.. .++.+....+..+..+.|+|||+++
T Consensus 96 ~~~~~e~~~a-N~e~~~~~~~A~~----~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~ 163 (238)
T COG4798 96 NAAAREPVYA-NVEVIGKPLVALG----APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYL 163 (238)
T ss_pred hhhhhhhhhh-hhhhhCCcccccC----CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEE
Confidence 1111222332 5666666655543 2356777765433322 2334456667777778999999875
No 498
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.70 E-value=2.2 Score=46.18 Aligned_cols=91 Identities=11% Similarity=0.016 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCc---------------------------------------
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTA--------------------------------------- 429 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~--------------------------------------- 429 (694)
++....||.......++...+|-=|| |-+..-||..+ +.
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~-~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIA-ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhc-cccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 45667777777766677677887788 77777777664 21
Q ss_pred -eEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEccc
Q 044245 430 -HVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 430 -~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~ 487 (694)
+.|.+|- .+.+.+.|+.++++-|+. |.|++.++++..+... .+..|+|||-|
T Consensus 255 ~~~~G~Di--d~r~i~~Ak~NA~~AGv~-d~I~f~~~d~~~l~~~---~~~~gvvI~NP 307 (381)
T COG0116 255 PIIYGSDI--DPRHIEGAKANARAAGVG-DLIEFKQADATDLKEP---LEEYGVVISNP 307 (381)
T ss_pred ceEEEecC--CHHHHHHHHHHHHhcCCC-ceEEEEEcchhhCCCC---CCcCCEEEeCC
Confidence 3668887 666678899999999998 9999999988877652 16789999995
No 499
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=88.52 E-value=1.1 Score=46.38 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=77.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH--cCCC-CcEEEEecccccccccc
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV--NGMG-RNIKVINKRSDELEVGV 143 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~--ngl~-~~I~vi~~~~~~l~~~~ 143 (694)
.++||-||-|.|......+++-. -..+.-||++...++..++.... .|++ .+|.++-||...+--
T Consensus 122 pkkvlVVgggDggvlrevikH~~----------ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~-- 189 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKS----------VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLE-- 189 (337)
T ss_pred CCeEEEEecCCccceeeeecccc----------ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHH--
Confidence 58999999999988777777621 35899999999999999988763 4554 478888887655431
Q ss_pred CC-CCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcCceEE
Q 044245 144 DI-DSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 144 ~l-~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
+. .++||+|+.+.-+-..-.+. ..........+.|++||.++-..-.+
T Consensus 190 ~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 190 DLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred HhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 22 46899999875332211111 12334445566899999887655433
No 500
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=0.24 Score=46.54 Aligned_cols=103 Identities=8% Similarity=0.046 Sum_probs=60.9
Q ss_pred CCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-cccEEEeecccccccccccCCccc
Q 044245 404 RVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-IDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 404 ~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
+.|+.|+.+|.| |+-++|.|...-.+.|.--+. .+.+.+-.++++..|..+ .+++.+++-....-.... .....
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdg--ne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~-eq~tF 104 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDG--NEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ-EQHTF 104 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecC--CHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH-hhCcc
Confidence 456778999999 888888887533455655566 566666678888888543 145555543222111111 13579
Q ss_pred cEEEcc--ccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 481 DLLIGE--PYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 481 DvivsE--~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
|+|++- .||..+ . + -..+.+.++|+|.|+
T Consensus 105 DiIlaADClFfdE~----h-~-----sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 105 DIILAADCLFFDEH----H-E-----SLVDTIKSLLRPSGR 135 (201)
T ss_pred cEEEeccchhHHHH----H-H-----HHHHHHHHHhCcccc
Confidence 999985 444311 0 0 222334557999875
Done!