BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044247
         (333 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HOE|A Chain A, Crystal Structure Of N-Acetylglucosamine Kinase (Tm1224)
           From Thermotoga Maritima At 2.46 A Resolution
          Length = 380

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 14  LERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGG 73
           L+ V   G S L E  +  G +R   Y D    D  RY  +G+  LI L  ++K +V GG
Sbjct: 269 LKHVLSXGFSSLAE-ARDSGDVRVKEYFD----DIARYFSIGLLNLIHLFGISK-IVIGG 322

Query: 74  YDRACSLGSLKKL------NLLRQCSID 95
           + +      LKK+      +LL + S+D
Sbjct: 323 FFKELGENFLKKIKIEVETHLLYKHSVD 350


>pdb|2TRC|G Chain G, PhosducinTRANSDUCIN BETA-Gamma Complex
 pdb|1B9X|B Chain B, Structural Analysis Of Phosducin And Its Phosphorylation-
           Regulated Interaction With Transducin
 pdb|1B9Y|B Chain B, Structural Analysis Of Phosducin And Its Phosphorylation-
           Regulated Interaction With Transducin Beta-Gamma
          Length = 68

 Score = 28.1 bits (61), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 270 MPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACHILQERNREETGEDWPMIRHIPD 329
           MP ++   +    +LK   D L ++ TL+ + +   C   ++   E +GED P+++ IP+
Sbjct: 1   MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGED-PLVKGIPE 59

Query: 330 IYIP 333
              P
Sbjct: 60  DKNP 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.140    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,302,031
Number of Sequences: 62578
Number of extensions: 349971
Number of successful extensions: 774
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 6
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)