Query 044247
Match_columns 333
No_of_seqs 170 out of 1968
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 12:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 6.3E-22 1.4E-26 199.7 12.9 265 4-307 156-439 (968)
2 PLN03210 Resistant to P. syrin 99.9 2.7E-21 6E-26 196.2 15.8 117 182-312 778-909 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.8E-21 4E-26 196.4 13.4 274 3-309 179-465 (968)
4 KOG0444 Cytoskeletal regulator 99.8 2.9E-22 6.4E-27 180.0 -5.4 256 3-310 94-376 (1255)
5 PLN03210 Resistant to P. syrin 99.8 1.2E-18 2.6E-23 177.1 15.1 248 11-312 610-885 (1153)
6 KOG4194 Membrane glycoprotein 99.8 2E-19 4.3E-24 160.7 2.6 64 8-73 169-234 (873)
7 KOG0444 Cytoskeletal regulator 99.7 5.3E-20 1.2E-24 165.7 -2.9 272 2-310 68-353 (1255)
8 KOG4194 Membrane glycoprotein 99.7 1.1E-18 2.4E-23 155.9 0.6 251 7-302 192-446 (873)
9 KOG0472 Leucine-rich repeat pr 99.7 4.8E-19 1E-23 151.7 -7.7 251 3-310 59-311 (565)
10 KOG0472 Leucine-rich repeat pr 99.6 3.5E-17 7.6E-22 140.4 -2.4 111 175-307 428-539 (565)
11 KOG0618 Serine/threonine phosp 99.6 8.2E-17 1.8E-21 150.9 -3.6 231 2-284 254-489 (1081)
12 PRK15387 E3 ubiquitin-protein 99.5 2.3E-13 4.9E-18 130.6 11.3 237 2-307 214-456 (788)
13 KOG0618 Serine/threonine phosp 99.4 3.9E-15 8.5E-20 139.8 -3.3 127 155-308 358-488 (1081)
14 KOG0617 Ras suppressor protein 99.4 3.1E-15 6.6E-20 114.5 -4.4 164 27-224 25-191 (264)
15 PRK15370 E3 ubiquitin-protein 99.4 3.7E-13 7.9E-18 129.7 7.9 233 2-308 191-427 (754)
16 cd00116 LRR_RI Leucine-rich re 99.4 3.5E-14 7.6E-19 125.7 0.7 39 8-46 19-61 (319)
17 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.7E-19 111.2 -3.5 184 8-224 29-218 (264)
18 KOG4658 Apoptotic ATPase [Sign 99.4 7.1E-13 1.5E-17 129.7 6.5 206 7-222 566-787 (889)
19 cd00116 LRR_RI Leucine-rich re 99.3 2.3E-13 4.9E-18 120.5 -0.3 269 16-309 2-291 (319)
20 PRK15370 E3 ubiquitin-protein 99.3 7.4E-12 1.6E-16 120.7 6.4 217 1-283 211-427 (754)
21 PRK15387 E3 ubiquitin-protein 99.2 1.3E-10 2.9E-15 111.8 12.3 227 12-306 201-432 (788)
22 KOG4658 Apoptotic ATPase [Sign 99.2 1.4E-11 3E-16 120.7 5.0 189 2-209 585-798 (889)
23 KOG4237 Extracellular matrix p 99.2 1.2E-12 2.6E-17 112.6 -3.9 90 2-94 80-171 (498)
24 KOG4341 F-box protein containi 99.0 4.2E-12 9.1E-17 110.1 -5.9 162 153-333 291-457 (483)
25 KOG3207 Beta-tubulin folding c 98.9 3.5E-10 7.6E-15 98.8 1.8 180 9-216 118-312 (505)
26 KOG4341 F-box protein containi 98.9 6.7E-11 1.5E-15 102.7 -3.5 263 13-312 139-417 (483)
27 PF14580 LRR_9: Leucine-rich r 98.8 1.4E-09 3E-14 86.3 2.4 128 152-302 15-147 (175)
28 KOG1909 Ran GTPase-activating 98.8 3.7E-10 8.1E-15 96.0 -1.2 250 8-283 26-310 (382)
29 KOG2120 SCF ubiquitin ligase, 98.8 2.3E-10 5.1E-15 95.3 -3.6 182 37-252 186-374 (419)
30 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.5E-14 95.6 -0.2 187 7-216 141-337 (505)
31 KOG1909 Ran GTPase-activating 98.8 5.1E-10 1.1E-14 95.2 -2.6 20 149-168 206-225 (382)
32 KOG1259 Nischarin, modulator o 98.7 2.5E-09 5.3E-14 89.5 -0.4 224 8-282 178-410 (490)
33 KOG1259 Nischarin, modulator o 98.7 4.8E-09 1E-13 87.8 0.9 126 155-307 283-410 (490)
34 COG4886 Leucine-rich repeat (L 98.6 3.9E-08 8.4E-13 89.8 4.4 59 12-72 116-175 (394)
35 KOG0532 Leucine-rich repeat (L 98.5 1.3E-08 2.9E-13 92.0 -0.6 156 1-192 110-270 (722)
36 KOG2120 SCF ubiquitin ligase, 98.5 7.7E-09 1.7E-13 86.5 -2.8 170 105-307 200-374 (419)
37 KOG0532 Leucine-rich repeat (L 98.4 1.6E-08 3.5E-13 91.4 -2.8 179 2-215 88-270 (722)
38 COG4886 Leucine-rich repeat (L 98.4 1.7E-07 3.6E-12 85.6 3.3 163 1-196 128-291 (394)
39 PF14580 LRR_9: Leucine-rich r 98.4 2.2E-07 4.8E-12 73.8 2.9 102 13-127 20-125 (175)
40 KOG4237 Extracellular matrix p 98.3 1.2E-08 2.6E-13 88.4 -5.2 228 5-252 108-357 (498)
41 PF13855 LRR_8: Leucine rich r 98.2 1E-06 2.2E-11 57.4 3.1 58 12-71 1-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.3E-11 57.3 2.1 57 182-251 1-59 (61)
43 PLN03150 hypothetical protein; 98.0 7.6E-06 1.6E-10 78.8 5.8 107 13-126 419-526 (623)
44 PRK15386 type III secretion pr 98.0 2.9E-05 6.2E-10 69.5 8.4 139 8-192 48-187 (426)
45 KOG3665 ZYG-1-like serine/thre 98.0 1.9E-06 4.2E-11 83.0 0.3 160 12-191 122-284 (699)
46 PRK15386 type III secretion pr 97.9 6.5E-05 1.4E-09 67.3 9.6 75 110-214 47-121 (426)
47 KOG0531 Protein phosphatase 1, 97.9 1E-06 2.2E-11 80.9 -1.9 41 32-73 91-131 (414)
48 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3.1E-10 47.8 3.6 40 12-53 1-40 (44)
49 KOG2982 Uncharacterized conser 97.9 1.3E-06 2.9E-11 73.3 -1.5 110 9-126 42-157 (418)
50 KOG0531 Protein phosphatase 1, 97.9 2.5E-06 5.5E-11 78.3 -0.3 107 7-127 90-198 (414)
51 KOG3665 ZYG-1-like serine/thre 97.9 3.9E-06 8.5E-11 80.9 0.7 138 114-280 121-259 (699)
52 PLN03150 hypothetical protein; 97.8 3.2E-05 7E-10 74.5 6.1 42 175-216 435-477 (623)
53 KOG2982 Uncharacterized conser 97.8 6E-06 1.3E-10 69.5 0.2 209 10-249 69-287 (418)
54 KOG1859 Leucine-rich repeat pr 97.7 1.9E-07 4E-12 87.1 -10.1 60 151-215 204-264 (1096)
55 KOG1947 Leucine rich repeat pr 97.7 3.9E-06 8.4E-11 78.5 -2.5 141 34-192 186-331 (482)
56 KOG1947 Leucine rich repeat pr 97.6 6.5E-06 1.4E-10 77.0 -2.1 138 58-214 186-330 (482)
57 KOG1859 Leucine-rich repeat pr 97.5 3.2E-06 7E-11 79.1 -4.9 90 109-221 203-294 (1096)
58 COG5238 RNA1 Ran GTPase-activa 97.5 5.1E-05 1.1E-09 63.2 2.3 253 8-285 26-316 (388)
59 KOG1644 U2-associated snRNP A' 97.5 0.00024 5.1E-09 56.8 5.3 106 181-305 41-149 (233)
60 PF12799 LRR_4: Leucine Rich r 97.4 0.0002 4.4E-09 42.8 3.0 33 183-216 2-35 (44)
61 KOG1644 U2-associated snRNP A' 97.3 0.00036 7.8E-09 55.8 4.9 92 150-252 58-151 (233)
62 COG5238 RNA1 Ran GTPase-activa 97.2 0.00023 5E-09 59.5 2.7 174 4-192 50-252 (388)
63 KOG2123 Uncharacterized conser 97.1 4.4E-05 9.6E-10 63.8 -2.8 106 155-277 18-123 (388)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00057 1.2E-08 56.8 2.3 113 8-125 39-153 (260)
65 KOG3864 Uncharacterized conser 96.4 0.00029 6.4E-09 56.2 -2.4 88 206-310 102-190 (221)
66 KOG2123 Uncharacterized conser 96.4 8.9E-05 1.9E-09 62.0 -5.7 105 113-248 17-124 (388)
67 KOG4579 Leucine-rich repeat (L 96.4 0.00025 5.4E-09 53.1 -2.8 64 8-73 49-113 (177)
68 KOG2739 Leucine-rich acidic nu 95.8 0.0037 8E-08 52.1 1.2 91 8-99 61-155 (260)
69 PF13306 LRR_5: Leucine rich r 95.3 0.074 1.6E-06 39.8 6.7 35 178-214 31-67 (129)
70 PF00560 LRR_1: Leucine Rich R 95.3 0.011 2.4E-07 29.4 1.4 20 13-33 1-20 (22)
71 KOG4579 Leucine-rich repeat (L 95.3 0.0012 2.5E-08 49.7 -3.2 66 147-216 44-111 (177)
72 PF00560 LRR_1: Leucine Rich R 94.2 0.025 5.5E-07 28.0 1.1 21 37-58 1-21 (22)
73 PF13306 LRR_5: Leucine rich r 93.9 0.13 2.8E-06 38.5 4.9 58 151-213 30-89 (129)
74 KOG3864 Uncharacterized conser 93.4 0.019 4.2E-07 46.1 -0.3 88 13-102 102-191 (221)
75 PF13504 LRR_7: Leucine rich r 92.8 0.092 2E-06 24.1 1.6 15 13-28 2-16 (17)
76 smart00367 LRR_CC Leucine-rich 88.9 0.27 5.7E-06 25.4 1.3 14 271-284 2-15 (26)
77 smart00369 LRR_TYP Leucine-ric 87.4 0.48 1E-05 24.3 1.7 18 12-30 2-19 (26)
78 smart00370 LRR Leucine-rich re 87.4 0.48 1E-05 24.3 1.7 18 12-30 2-19 (26)
79 PF13516 LRR_6: Leucine Rich r 75.5 0.79 1.7E-05 22.9 -0.2 12 12-23 2-13 (24)
80 KOG0473 Leucine-rich repeat pr 73.3 0.19 4.1E-06 41.6 -4.4 87 4-96 33-120 (326)
81 smart00364 LRR_BAC Leucine-ric 53.9 8.8 0.00019 19.8 1.1 16 14-30 4-19 (26)
82 smart00365 LRR_SD22 Leucine-ri 51.6 13 0.00027 19.2 1.5 12 12-23 2-13 (26)
83 KOG3763 mRNA export factor TAP 50.8 4.6 9.9E-05 37.9 -0.3 12 204-215 243-254 (585)
84 KOG4308 LRR-containing protein 44.6 0.42 9.1E-06 44.7 -8.1 33 14-46 89-125 (478)
85 KOG0473 Leucine-rich repeat pr 36.1 1.8 3.9E-05 36.0 -4.7 64 6-71 59-122 (326)
86 KOG3763 mRNA export factor TAP 35.6 14 0.00031 34.7 0.5 62 154-218 216-283 (585)
87 smart00368 LRR_RI Leucine rich 32.2 33 0.00072 17.8 1.3 11 13-23 3-13 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=6.3e-22 Score=199.70 Aligned_cols=265 Identities=17% Similarity=0.160 Sum_probs=135.5
Q ss_pred ccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcccc
Q 044247 4 LPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSL 83 (333)
Q Consensus 4 lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 83 (333)
+|..++.+++|++|++++|...+.+|..++++++|++|++++|.....+|..++.+++|++|++.+|... +..+..+
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l 232 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS---GEIPYEI 232 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC---CcCChhH
Confidence 3444555555555555555433444555555555555555555333344444555555555555544433 2233444
Q ss_pred ccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEE
Q 044247 84 KKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHI 163 (333)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 163 (333)
.++++|+.|++...... ......+..+++|++|++++|. .....+..+..+++|+.|++
T Consensus 233 ~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~-----------------l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLT----GPIPSSLGNLKNLQYLFLYQNK-----------------LSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred hcCCCCCEEECcCceec----cccChhHhCCCCCCEEECcCCe-----------------eeccCchhHhhccCcCEEEC
Confidence 44555555444332110 0111234444555555555553 22233344445556666666
Q ss_pred eeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCccccCCC
Q 044247 164 HEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPK 242 (333)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~ 242 (333)
++|..... + |.++..+++|+.|++++|...+..|. ++.+++|+.|++++|.....+|.. +..+++
T Consensus 292 s~n~l~~~-~-p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~------------l~~~~~ 357 (968)
T PLN00113 292 SDNSLSGE-I-PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN------------LGKHNN 357 (968)
T ss_pred cCCeeccC-C-ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH------------HhCCCC
Confidence 55544321 3 55555566666666666544333443 555566666666665532233322 345556
Q ss_pred ccEEeeccCcc-------------ccccc-----cCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcc
Q 044247 243 LKRLRFWSMSE-------------LEEWD-----LGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWG 304 (333)
Q Consensus 243 L~~L~l~~~~~-------------L~~~~-----~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 304 (333)
|+.|+++++.- ++.+. +.+.+|..+..+++|+.|++++|+....+|..+..+++|+.+++ .
T Consensus 358 L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-s 436 (968)
T PLN00113 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI-S 436 (968)
T ss_pred CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC-c
Confidence 66666654321 01111 22345556667788888888887666667777777888888888 7
Q ss_pred cCh
Q 044247 305 ACH 307 (333)
Q Consensus 305 ~c~ 307 (333)
+|.
T Consensus 437 ~N~ 439 (968)
T PLN00113 437 NNN 439 (968)
T ss_pred CCc
Confidence 764
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.7e-21 Score=196.25 Aligned_cols=117 Identities=22% Similarity=0.323 Sum_probs=76.7
Q ss_pred CCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccc--
Q 044247 182 TNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWD-- 258 (333)
Q Consensus 182 ~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~-- 258 (333)
++|+.|++++|..+..+|. ++++++|+.|++++|..++.+|.. ..+++|+.|++++|.++..++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-------------~~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-------------INLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-------------CCccccCEEECCCCCcccccccc
Confidence 4555555555544444444 555555555555555555544432 134555555555554443332
Q ss_pred --------c----CCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccChhhHhh
Q 044247 259 --------L----GTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACHILQER 312 (333)
Q Consensus 259 --------~----~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~~l~~~ 312 (333)
+ -..+|.++..+++|+.|++.+|++++.+|.....+++|+.+++ .+|+.++..
T Consensus 845 ~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l-~~C~~L~~~ 909 (1153)
T PLN03210 845 STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF-SDCGALTEA 909 (1153)
T ss_pred ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec-CCCcccccc
Confidence 0 1235667778999999999999999999998888999999999 999988754
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.8e-21 Score=196.35 Aligned_cols=274 Identities=19% Similarity=0.223 Sum_probs=196.2
Q ss_pred cccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccc
Q 044247 3 KLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGS 82 (333)
Q Consensus 3 ~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 82 (333)
.+|..++++++|++|++++|...+.+|..++++++|++|++++|.....+|..++.+++|++|++.+|... +..+..
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~ 255 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT---GPIPSS 255 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec---cccChh
Confidence 57889999999999999999966789999999999999999999666678888999999999999988765 456777
Q ss_pred cccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEE
Q 044247 83 LKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELH 162 (333)
Q Consensus 83 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 162 (333)
+.++++|+.|.+....-.. .....+..+++|++|++++|.+ ....+..+..+++|+.|+
T Consensus 256 l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l-----------------~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSL-----------------SGEIPELVIQLQNLEILH 314 (968)
T ss_pred HhCCCCCCEEECcCCeeec----cCchhHhhccCcCEEECcCCee-----------------ccCCChhHcCCCCCcEEE
Confidence 8889999998886533211 1223566778999999988853 334455566677777777
Q ss_pred EeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCC---------
Q 044247 163 IHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDT--------- 232 (333)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~--------- 232 (333)
+++|..... + |..+..+++|+.|++++|...+.+|. ++.+++|+.|++++|.....++..+......+
T Consensus 315 l~~n~~~~~-~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 315 LFSNNFTGK-I-PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred CCCCccCCc-C-ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 777665531 3 66667777777777777755545554 66677777777777663333333211100000
Q ss_pred ---CCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccChhh
Q 044247 233 ---DGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACHIL 309 (333)
Q Consensus 233 ---~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~~l 309 (333)
....+..+++|+.|++++|. +.+.+|..+..+++|+.|++++|.....++.....+++|+.|++ .+|...
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-~~n~~~ 465 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNS------FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL-ARNKFF 465 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCE------eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC-cCceee
Confidence 00114456777777777754 33445667778999999999997766667776777999999999 988643
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=2.9e-22 Score=180.04 Aligned_cols=256 Identities=19% Similarity=0.217 Sum_probs=162.7
Q ss_pred cccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCccccccc-ccccccCceeeeEEEcCccCCCCCcc
Q 044247 3 KLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 3 ~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
.+|..|.+|..|.+|+++.|. +.+.|..+..-+++-.|+++.| .++.+|.. +.++.-|-.|++++|.... .++
T Consensus 94 GiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~----LPP 167 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM----LPP 167 (1255)
T ss_pred CCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh----cCH
Confidence 578888888888888888887 7777777766667777777666 55555543 2344445555555554432 344
Q ss_pred ccccCc------------------------cCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcc
Q 044247 82 SLKKLN------------------------LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGR 137 (333)
Q Consensus 82 ~l~~l~------------------------~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 137 (333)
.++.+. +|+.|++.+... ....++..+.++.+|..++++.|
T Consensus 168 Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~N------------ 232 (1255)
T KOG0444|consen 168 QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSEN------------ 232 (1255)
T ss_pred HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc---hhhcCCCchhhhhhhhhcccccc------------
Confidence 444444 444444443322 11122234444556666666665
Q ss_pred cCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceeccccc
Q 044247 138 RENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~ 216 (333)
....++..+...++|+.|++++|...+ + .....-+.+|+.|+++.| .+..+|. +..+++|+.|++.+|.
T Consensus 233 ------~Lp~vPecly~l~~LrrLNLS~N~ite--L-~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 233 ------NLPIVPECLYKLRNLRRLNLSGNKITE--L-NMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred ------CCCcchHHHhhhhhhheeccCcCceee--e-eccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc
Confidence 334555666666667777777666665 4 444445666777777766 5566665 6677777777777765
Q ss_pred c-cccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCC
Q 044247 217 S-VKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKS 295 (333)
Q Consensus 217 ~-l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~ 295 (333)
. .+-+|.. ++.+.+|+.+...+ +.|+ .+|+.+..|+.|+.|.+. |+++..+|..+.-++
T Consensus 303 L~FeGiPSG------------IGKL~~Levf~aan-N~LE------lVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~ 362 (1255)
T KOG0444|consen 303 LTFEGIPSG------------IGKLIQLEVFHAAN-NKLE------LVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLP 362 (1255)
T ss_pred ccccCCccc------------hhhhhhhHHHHhhc-cccc------cCchhhhhhHHHHHhccc-ccceeechhhhhhcC
Confidence 2 1223322 56677777777766 3443 355667799999999997 588999999998899
Q ss_pred CcceEEEcccChhhH
Q 044247 296 TLQNLEIWGACHILQ 310 (333)
Q Consensus 296 ~L~~L~l~~~c~~l~ 310 (333)
.|+.|++ +++|++.
T Consensus 363 ~l~vLDl-reNpnLV 376 (1255)
T KOG0444|consen 363 DLKVLDL-RENPNLV 376 (1255)
T ss_pred Ccceeec-cCCcCcc
Confidence 9999999 9998875
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.2e-18 Score=177.15 Aligned_cols=248 Identities=22% Similarity=0.265 Sum_probs=146.6
Q ss_pred CCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCc
Q 044247 11 LYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLR 90 (333)
Q Consensus 11 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 90 (333)
+.+|++|++.++. +..++..+..+++|+.|+++++..+..+|. +..+++|++|++.+|... ...+..+.++++|+
T Consensus 610 ~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L---~~lp~si~~L~~L~ 684 (1153)
T PLN03210 610 PENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL---VELPSSIQYLNKLE 684 (1153)
T ss_pred ccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCc---cccchhhhccCCCC
Confidence 4555556665555 555555555566666666665544555543 555566666666555433 23444555556666
Q ss_pred eeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCC
Q 044247 91 QCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRR 170 (333)
Q Consensus 91 ~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 170 (333)
.|.+..+..+..... .+ .+++|+.|++++|. ....++. ...+|+.|+++++....
T Consensus 685 ~L~L~~c~~L~~Lp~----~i-~l~sL~~L~Lsgc~-----------------~L~~~p~---~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 685 DLDMSRCENLEILPT----GI-NLKSLYRLNLSGCS-----------------RLKSFPD---ISTNISWLDLDETAIEE 739 (1153)
T ss_pred EEeCCCCCCcCccCC----cC-CCCCCCEEeCCCCC-----------------Ccccccc---ccCCcCeeecCCCcccc
Confidence 665554443322111 11 34556666666552 1112221 12456667776666555
Q ss_pred CccCchhhhcCCCccEEEeecCCCC------CCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccccCCC
Q 044247 171 NVVPKNWVMSLTNLRVLHLFECRNC------EHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPK 242 (333)
Q Consensus 171 ~~~~~~~~~~~~~L~~L~l~~~~~~------~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~ 242 (333)
+ |..+ .+++|+.|.+.++... ..++. ...+++|+.|++++|..+..+|.. ++.+++
T Consensus 740 --l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s------------i~~L~~ 803 (1153)
T PLN03210 740 --F-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS------------IQNLHK 803 (1153)
T ss_pred --c-cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh------------hhCCCC
Confidence 5 5443 4666777766654211 11111 223468889999988877777665 678999
Q ss_pred ccEEeeccCccccccccCCccccccccCCCcceEecccCcCccc--------------------CCcccCCCCCcceEEE
Q 044247 243 LKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKA--------------------LPDHLLQKSTLQNLEI 302 (333)
Q Consensus 243 L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--------------------l~~~~~~l~~L~~L~l 302 (333)
|+.|++.+|.+++.++... .+++|++|++++|..++. +|..+..+++|+.|++
T Consensus 804 L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred CCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEEC
Confidence 9999999998887665321 466777777777766543 4445566889999999
Q ss_pred cccChhhHhh
Q 044247 303 WGACHILQER 312 (333)
Q Consensus 303 ~~~c~~l~~~ 312 (333)
.+|..++..
T Consensus 877 -~~C~~L~~l 885 (1153)
T PLN03210 877 -NGCNNLQRV 885 (1153)
T ss_pred -CCCCCcCcc
Confidence 999888764
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=2e-19 Score=160.67 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=35.8
Q ss_pred hcCCCcccEEeecCCCccccc-CccccccccccEEecCCCCCccccccc-ccccccCceeeeEEEcCc
Q 044247 8 LCELYNLERVNVSGCSHLREL-PQGIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFVVCGG 73 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 73 (333)
+..=.++++|++++|. ++.+ -..|.++.+|..|.++.| .+..+|.. +.++++|+.|++..|.+.
T Consensus 169 fp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 169 FPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred CCCCCCceEEeecccc-ccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccccee
Confidence 3444556666666666 3322 233555666666666666 44455443 444666666666666554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=5.3e-20 Score=165.66 Aligned_cols=272 Identities=19% Similarity=0.180 Sum_probs=187.7
Q ss_pred CcccchhcCCCcccEEeecCCCcc-cccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHL-RELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
.++-..+..++.|+.+.++.|..- .-+|..|..+..|..|+++.| .+..+|.++..-.++-.|++++|.+..++...
T Consensus 68 ~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~l- 145 (1255)
T KOG0444|consen 68 ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSL- 145 (1255)
T ss_pred HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchH-
Confidence 345567888999999999999833 368999999999999999999 77899999999999999999999887522222
Q ss_pred cccccCccCceeEec--CCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhc----------ccCCcccccccc
Q 044247 81 GSLKKLNLLRQCSID--GLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAG----------RRENEEDEDERL 148 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~--~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 148 (333)
+-+++.|-.|++. .++.++ ..+..+..|++|.+++|.+. +.+-.+ ...+.+-....+
T Consensus 146 --finLtDLLfLDLS~NrLe~LP-------PQ~RRL~~LqtL~Ls~NPL~--hfQLrQLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 146 --FINLTDLLFLDLSNNRLEMLP-------PQIRRLSMLQTLKLSNNPLN--HFQLRQLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred --HHhhHhHhhhccccchhhhcC-------HHHHHHhhhhhhhcCCChhh--HHHHhcCccchhhhhhhcccccchhhcC
Confidence 2445555555443 333333 35566677777888777531 110000 001111133444
Q ss_pred cccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccC
Q 044247 149 LDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLG 227 (333)
Q Consensus 149 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~ 227 (333)
+..+..+.+|..++++.|.... + |+.+-.+++|++|++++| .++.+.. .+...+|++|.++.|+ ++.+|..
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp~--v-Pecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a--- 286 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLPI--V-PECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDA--- 286 (1255)
T ss_pred CCchhhhhhhhhccccccCCCc--c-hHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHH---
Confidence 5555566677777777776666 6 776667777777777777 3343332 5556677777777777 6666654
Q ss_pred CCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 228 VESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 228 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
+..+++|+.|.+.++ .| ..++||..++.+..|+.+...+ ++++-+|.++..++.|+.|.+ ..+.
T Consensus 287 ---------vcKL~kL~kLy~n~N-kL----~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L-~~Nr 350 (1255)
T KOG0444|consen 287 ---------VCKLTKLTKLYANNN-KL----TFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL-DHNR 350 (1255)
T ss_pred ---------HhhhHHHHHHHhccC-cc----cccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc-cccc
Confidence 456777777777663 33 3466888888999999998887 788889999999999999999 7665
Q ss_pred hhH
Q 044247 308 ILQ 310 (333)
Q Consensus 308 ~l~ 310 (333)
.++
T Consensus 351 LiT 353 (1255)
T KOG0444|consen 351 LIT 353 (1255)
T ss_pred eee
Confidence 544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-18 Score=155.93 Aligned_cols=251 Identities=20% Similarity=0.204 Sum_probs=189.1
Q ss_pred hhcCCCcccEEeecCCCcccccCccccc-cccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCCCccccc
Q 044247 7 TLCELYNLERVNVSGCSHLRELPQGIGK-LRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRACSLGSLK 84 (333)
Q Consensus 7 ~l~~l~~L~~L~l~~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 84 (333)
++..+.+|-+|.++.|. +..+|....+ +++|+.|++..| .++.+ -..+..+++|+.|.+..|.+.......+-.+.
T Consensus 192 ~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE 269 (873)
T ss_pred cccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeec
Confidence 57788899999999998 8888876555 999999999998 44444 34578999999999999887653344444444
Q ss_pred cCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEe
Q 044247 85 KLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIH 164 (333)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 164 (333)
+|..|. |..+.+..+.. ..+.++..|+.|++++|. +..--...|..+++|+.|+++
T Consensus 270 kme~l~-L~~N~l~~vn~------g~lfgLt~L~~L~lS~Na-----------------I~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 270 KMEHLN-LETNRLQAVNE------GWLFGLTSLEQLDLSYNA-----------------IQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred ccceee-cccchhhhhhc------ccccccchhhhhccchhh-----------------hheeecchhhhcccceeEecc
Confidence 444332 44445444333 577788999999999995 333445778889999999999
Q ss_pred eecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccccCCC
Q 044247 165 EYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPK 242 (333)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~ 242 (333)
.|...+ ++++.+..+..|+.|.|++| .++.+.. +.++.+|+.|++++|. +....++.-+. +.++++
T Consensus 326 ~N~i~~--l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~--------f~gl~~ 393 (873)
T KOG4194|consen 326 SNRITR--LDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVA--------FNGLPS 393 (873)
T ss_pred cccccc--CChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhh--------hccchh
Confidence 999988 75677888999999999999 5666655 7778999999999998 54443332221 678999
Q ss_pred ccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEE
Q 044247 243 LKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEI 302 (333)
Q Consensus 243 L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 302 (333)
|++|++.+ ++++.++-. .+..++.|++|++.++.....-|..+..+ .|++|.+
T Consensus 394 LrkL~l~g-Nqlk~I~kr-----Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 394 LRKLRLTG-NQLKSIPKR-----AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hhheeecC-ceeeecchh-----hhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 99999999 467666522 34568999999999977666666677766 8888877
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=4.8e-19 Score=151.71 Aligned_cols=251 Identities=22% Similarity=0.225 Sum_probs=195.1
Q ss_pred cccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccc
Q 044247 3 KLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGS 82 (333)
Q Consensus 3 ~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 82 (333)
.+-..+.++..|.+|++++++ +.++|++++.+..++.++++.| .+..+|+.++.+.++.+++.+.+.... .+.+
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~e----l~~~ 132 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKE----LPDS 132 (565)
T ss_pred hccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceee----cCch
Confidence 344567788888899999988 8888888999999999999888 677888888888889988888777654 5666
Q ss_pred cccCccCceeEec--CCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccE
Q 044247 83 LKKLNLLRQCSID--GLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKE 160 (333)
Q Consensus 83 l~~l~~L~~L~l~--~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 160 (333)
+..+-.+..+... .+..++ ..+..+.++..+.+.+++ ..+.+.....++.|+.
T Consensus 133 i~~~~~l~dl~~~~N~i~slp-------~~~~~~~~l~~l~~~~n~------------------l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQISSLP-------EDMVNLSKLSKLDLEGNK------------------LKALPENHIAMKRLKH 187 (565)
T ss_pred HHHHhhhhhhhccccccccCc-------hHHHHHHHHHHhhccccc------------------hhhCCHHHHHHHHHHh
Confidence 6666555554332 222222 345566777788888883 3444555455788888
Q ss_pred EEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccC
Q 044247 161 LHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAF 240 (333)
Q Consensus 161 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l 240 (333)
|+...+...+ + |..++.+.+|+.|++..| .+..+|.+++|..|++|+++.|. ++.+|.+. ...+
T Consensus 188 ld~~~N~L~t--l-P~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~-i~~lpae~-----------~~~L 251 (565)
T KOG0472|consen 188 LDCNSNLLET--L-PPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ-IEMLPAEH-----------LKHL 251 (565)
T ss_pred cccchhhhhc--C-ChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH-HHhhHHHH-----------hccc
Confidence 8887777766 8 889999999999999998 67788999999999999999998 77777654 4588
Q ss_pred CCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccChhhH
Q 044247 241 PKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACHILQ 310 (333)
Q Consensus 241 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~~l~ 310 (333)
+.+..|++.+ .++++++.. +.-+.+|++|++++ +.+..+|..++++ .|+.|.+ .+.|.-+
T Consensus 252 ~~l~vLDLRd-Nklke~Pde------~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~l-eGNPlrT 311 (565)
T KOG0472|consen 252 NSLLVLDLRD-NKLKEVPDE------ICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLAL-EGNPLRT 311 (565)
T ss_pred ccceeeeccc-cccccCchH------HHHhhhhhhhcccC-CccccCCcccccc-eeeehhh-cCCchHH
Confidence 9999999998 467666644 44889999999998 7889999999988 8999999 8887543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=3.5e-17 Score=140.41 Aligned_cols=111 Identities=22% Similarity=0.301 Sum_probs=79.7
Q ss_pred chhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCcc
Q 044247 175 KNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSE 253 (333)
Q Consensus 175 ~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 253 (333)
|..++.+++|..|++++| .+-++|. ++.+..|+.|+++.|. ...+|... ....-|+.+ +....+
T Consensus 428 ~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~------------y~lq~lEtl-las~nq 492 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECL------------YELQTLETL-LASNNQ 492 (565)
T ss_pred hHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc-cccchHHH------------hhHHHHHHH-Hhcccc
Confidence 666778888888888887 5666776 7777888888888885 66666532 122233333 333345
Q ss_pred ccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 254 LEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 254 L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
+..++.+ .+..+.+|..|++.+ +.+..+|..++.+.+|++|++ ++.|
T Consensus 493 i~~vd~~-----~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL-~gNp 539 (565)
T KOG0472|consen 493 IGSVDPS-----GLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLEL-DGNP 539 (565)
T ss_pred ccccChH-----HhhhhhhcceeccCC-CchhhCChhhccccceeEEEe-cCCc
Confidence 5444433 256889999999987 788899999999999999999 8876
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=8.2e-17 Score=150.90 Aligned_cols=231 Identities=25% Similarity=0.291 Sum_probs=161.4
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
+.+|.+++.+.+|+.+....|. +..+|..+....+|+.|.+..| .++.+|...+.+.+|++|++..|.... .+.
T Consensus 254 ~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~----lp~ 327 (1081)
T KOG0618|consen 254 SNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPS----LPD 327 (1081)
T ss_pred hcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccc----cch
Confidence 4567777777777777777776 5777777777777777777777 566677766677777777777776653 222
Q ss_pred c-cccCcc-CceeEec--CCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCC
Q 044247 82 S-LKKLNL-LRQCSID--GLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPN 157 (333)
Q Consensus 82 ~-l~~l~~-L~~L~l~--~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (333)
. +..+.. ++.+... .+...+.+.+ ..++.|+.|.+.+|. ..++....+..+++
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e------~~~~~Lq~LylanN~-----------------Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEE------NNHAALQELYLANNH-----------------LTDSCFPVLVNFKH 384 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccc------hhhHHHHHHHHhcCc-----------------ccccchhhhccccc
Confidence 1 111111 1111111 1111111111 123567777777776 45566778888999
Q ss_pred ccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCc
Q 044247 158 LKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSS 236 (333)
Q Consensus 158 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 236 (333)
|+.|++++|.... |+...+.+++.|+.|++++| .++.+|. +..++.|++|...+|. +..+|+
T Consensus 385 LKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe------------- 447 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNS--FPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQ-LLSFPE------------- 447 (1081)
T ss_pred eeeeeeccccccc--CCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCc-eeechh-------------
Confidence 9999999998877 73445668999999999999 6777777 8889999999999988 667773
Q ss_pred cccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCc
Q 044247 237 VIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCREL 284 (333)
Q Consensus 237 ~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 284 (333)
+..+++|+.++++. ++|+.+.+....|+ |+|++|+++++.++
T Consensus 448 ~~~l~qL~~lDlS~-N~L~~~~l~~~~p~-----p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSC-NNLSEVTLPEALPS-----PNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhcCcceEEeccc-chhhhhhhhhhCCC-----cccceeeccCCccc
Confidence 67999999999986 68888776665443 89999999998764
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=2.3e-13 Score=130.57 Aligned_cols=237 Identities=20% Similarity=0.191 Sum_probs=132.4
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
+.+|..+. .+|+.|++.+|. +..+|. .+++|++|++++| .+..+|.. .++|++|++.+|.... .+.
T Consensus 214 tsLP~~l~--~~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L~~----Lp~ 279 (788)
T PRK15387 214 TTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPLTH----LPA 279 (788)
T ss_pred CcCCcchh--cCCCEEEccCCc-CCCCCC---CCCCCcEEEecCC-ccCcccCc---ccccceeeccCCchhh----hhh
Confidence 45677665 367888888776 666665 2567888888777 56666642 3567777777665442 111
Q ss_pred ccccCccCceeEecC--CCCCCChhhHHHHhhcccCCccceEEeecCCCCCch-hhhc---ccCCcccccccccccCCCC
Q 044247 82 SLKKLNLLRQCSIDG--LGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDE-EQAG---RRENEEDEDERLLDALGPP 155 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~l~~~ 155 (333)
.. .+|+.|.+.. +..++. ..++|+.|++++|++..... +... ...++ ....++. ..
T Consensus 280 lp---~~L~~L~Ls~N~Lt~LP~----------~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N--~L~~LP~---lp 341 (788)
T PRK15387 280 LP---SGLCKLWIFGNQLTSLPV----------LPPGLQELSVSDNQLASLPALPSELCKLWAYNN--QLTSLPT---LP 341 (788)
T ss_pred ch---hhcCEEECcCCccccccc----------cccccceeECCCCccccCCCCcccccccccccC--ccccccc---cc
Confidence 11 2344444432 222211 13567788887775432100 0000 00000 0011110 11
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGS 235 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 235 (333)
.+|+.|++++|.... + |.. .++|+.|++++| .+..+|.. ..+|+.|++++|. +..+|.
T Consensus 342 ~~Lq~LdLS~N~Ls~--L-P~l---p~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~N~-Lt~LP~------------ 399 (788)
T PRK15387 342 SGLQELSVSDNQLAS--L-PTL---PSELYKLWAYNN-RLTSLPAL--PSGLKELIVSGNR-LTSLPV------------ 399 (788)
T ss_pred cccceEecCCCccCC--C-CCC---Ccccceehhhcc-ccccCccc--ccccceEEecCCc-ccCCCC------------
Confidence 356666666666555 5 432 345666666665 34445442 2457777777765 444432
Q ss_pred ccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 236 SVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
..++|+.|+++++ .+..++ . .+.+|+.|++++ +.++.+|..+..+++|+.|++ .+++
T Consensus 400 ---l~s~L~~LdLS~N-~LssIP------~---l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdL-s~N~ 456 (788)
T PRK15387 400 ---LPSELKELMVSGN-RLTSLP------M---LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNL-EGNP 456 (788)
T ss_pred ---cccCCCEEEccCC-cCCCCC------c---chhhhhhhhhcc-CcccccChHHhhccCCCeEEC-CCCC
Confidence 2346788888875 354433 1 134678888887 567788888888899999999 8875
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=3.9e-15 Score=139.82 Aligned_cols=127 Identities=27% Similarity=0.449 Sum_probs=98.3
Q ss_pred CCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCC
Q 044247 155 PPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDT 232 (333)
Q Consensus 155 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 232 (333)
++.|+.|.+.+|.....-+ ..+.++.+|+.|+|++| .++.+|. +.+++.|++|++++|. ++.+|..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~--p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t-------- 425 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCF--PVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLPDT-------- 425 (1081)
T ss_pred hHHHHHHHHhcCcccccch--hhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-hhhhhHH--------
Confidence 3567778888877666423 34567999999999999 6778887 8889999999999998 8888866
Q ss_pred CCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCccc--CCcccCCCCCcceEEEcccChh
Q 044247 233 DGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKA--LPDHLLQKSTLQNLEIWGACHI 308 (333)
Q Consensus 233 ~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~c~~ 308 (333)
+..++.|++|...+ +.+..+| .+..++.|+.++++ |+.++. ++.... .++|+.|++ ++++.
T Consensus 426 ----va~~~~L~tL~ahs-N~l~~fP-------e~~~l~qL~~lDlS-~N~L~~~~l~~~~p-~p~LkyLdl-SGN~~ 488 (1081)
T KOG0618|consen 426 ----VANLGRLHTLRAHS-NQLLSFP-------ELAQLPQLKVLDLS-CNNLSEVTLPEALP-SPNLKYLDL-SGNTR 488 (1081)
T ss_pred ----HHhhhhhHHHhhcC-Cceeech-------hhhhcCcceEEecc-cchhhhhhhhhhCC-Ccccceeec-cCCcc
Confidence 67889999998887 4555555 23478999999998 577764 444333 389999999 98874
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=3.1e-15 Score=114.50 Aligned_cols=164 Identities=24% Similarity=0.246 Sum_probs=123.7
Q ss_pred ccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCceeEe--cCCCCCCChh
Q 044247 27 ELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSI--DGLGGVSDAG 104 (333)
Q Consensus 27 ~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l--~~~~~~~~~~ 104 (333)
++|. +..+.+...|.++.| .+..+|..++.+.+|+.|+++++++.. .+..++.+++|+.|.+ +.+..++
T Consensus 25 ~~~g-Lf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~----lp~~issl~klr~lnvgmnrl~~lp--- 95 (264)
T KOG0617|consen 25 ELPG-LFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEE----LPTSISSLPKLRILNVGMNRLNILP--- 95 (264)
T ss_pred hccc-ccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhh----cChhhhhchhhhheecchhhhhcCc---
Confidence 3444 556677777778887 667777778888888888888777755 6777777777777544 3333333
Q ss_pred hHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCc
Q 044247 105 EARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNL 184 (333)
Q Consensus 105 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 184 (333)
..++.++.|+.|++.+|++ .....+..|..+..|+.|.++++.+.. + |..++.+.+|
T Consensus 96 ----rgfgs~p~levldltynnl----------------~e~~lpgnff~m~tlralyl~dndfe~--l-p~dvg~lt~l 152 (264)
T KOG0617|consen 96 ----RGFGSFPALEVLDLTYNNL----------------NENSLPGNFFYMTTLRALYLGDNDFEI--L-PPDVGKLTNL 152 (264)
T ss_pred ----cccCCCchhhhhhcccccc----------------ccccCCcchhHHHHHHHHHhcCCCccc--C-Chhhhhhcce
Confidence 3778889999999998875 334556777778889999999998887 7 8889999999
Q ss_pred cEEEeecCCCCCCCCC-CCCCccccceeccccccccccccc
Q 044247 185 RVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNE 224 (333)
Q Consensus 185 ~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~ 224 (333)
+.|.+.+|+.+ .+|. ++.++.|++|++.+|. ++.+|.+
T Consensus 153 qil~lrdndll-~lpkeig~lt~lrelhiqgnr-l~vlppe 191 (264)
T KOG0617|consen 153 QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR-LTVLPPE 191 (264)
T ss_pred eEEeeccCchh-hCcHHHHHHHHHHHHhcccce-eeecChh
Confidence 99999998544 4554 8889999999999988 6666553
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=3.7e-13 Score=129.66 Aligned_cols=233 Identities=14% Similarity=0.152 Sum_probs=139.4
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
+.+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++| .+..+|..+. .+|+.|++++|.... .+.
T Consensus 191 tsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~----LP~ 258 (754)
T PRK15370 191 TTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITE----LPE 258 (754)
T ss_pred CcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCc----CCh
Confidence 45666553 467788888776 667776554 47888888877 5566665442 467788877776553 233
Q ss_pred ccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEE
Q 044247 82 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKEL 161 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 161 (333)
.+. .+|+.|++... .+.... ..+ .++|+.|++++|.+. .++..+ .++|+.|
T Consensus 259 ~l~--s~L~~L~Ls~N-~L~~LP----~~l--~~sL~~L~Ls~N~Lt------------------~LP~~l--p~sL~~L 309 (754)
T PRK15370 259 RLP--SALQSLDLFHN-KISCLP----ENL--PEELRYLSVYDNSIR------------------TLPAHL--PSGITHL 309 (754)
T ss_pred hHh--CCCCEEECcCC-ccCccc----ccc--CCCCcEEECCCCccc------------------cCcccc--hhhHHHH
Confidence 332 35666655421 111111 111 146778888777432 222222 1367777
Q ss_pred EEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCC
Q 044247 162 HIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFP 241 (333)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~ 241 (333)
++++|.... + |..+ +++|+.|++++| .+..+|. .-+++|+.|++++|. +..+|.. ..+
T Consensus 310 ~Ls~N~Lt~--L-P~~l--~~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N~-L~~LP~~--------------lp~ 367 (754)
T PRK15370 310 NVQSNSLTA--L-PETL--PPGLKTLEAGEN-ALTSLPA-SLPPELQVLDVSKNQ-ITVLPET--------------LPP 367 (754)
T ss_pred HhcCCcccc--C-Cccc--cccceeccccCC-ccccCCh-hhcCcccEEECCCCC-CCcCChh--------------hcC
Confidence 777776665 5 5433 467888888887 4455554 113678888888876 5555432 235
Q ss_pred CccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCccc----CCCCCcceEEEcccChh
Q 044247 242 KLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHL----LQKSTLQNLEIWGACHI 308 (333)
Q Consensus 242 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~~c~~ 308 (333)
+|++|++++| ++..++. .+ .+.|+.|++++ +.+..+|..+ ...+++..+++ .+++.
T Consensus 368 ~L~~LdLs~N-~Lt~LP~------~l--~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L-~~Npl 427 (754)
T PRK15370 368 TITTLDVSRN-ALTNLPE------NL--PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIV-EYNPF 427 (754)
T ss_pred CcCEEECCCC-cCCCCCH------hH--HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEe-eCCCc
Confidence 7888888885 4544432 11 24688888887 4566666533 33577888888 77663
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=3.5e-14 Score=125.67 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=19.2
Q ss_pred hcCCCcccEEeecCCCcc----cccCccccccccccEEecCCC
Q 044247 8 LCELYNLERVNVSGCSHL----RELPQGIGKLRKLMYLDNDYT 46 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~----~~lp~~i~~l~~L~~L~l~~~ 46 (333)
+..+.+|++|++.+|... ..++..+...++|++++++++
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~ 61 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN 61 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc
Confidence 334445556666655521 223444444555555555554
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.2e-14 Score=111.22 Aligned_cols=184 Identities=21% Similarity=0.233 Sum_probs=108.5
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLN 87 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 87 (333)
+..+.+...|.++.|+ +..+|+.|..+.+|+.|++..| .++.+|..+..++.|++|++.-+.... .+.+++.++
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~----lprgfgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNI----LPRGFGSFP 102 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhc----CccccCCCc
Confidence 3344555555555555 5555555555555665555555 445555555555555555555444332 444555555
Q ss_pred cCceeEec--CCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEee
Q 044247 88 LLRQCSID--GLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHE 165 (333)
Q Consensus 88 ~L~~L~l~--~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 165 (333)
.|+.|++. .+.. ..+...+..+..|+.|.+..| ...-++..++.+.+|+.|.+++
T Consensus 103 ~levldltynnl~e-----~~lpgnff~m~tlralyl~dn------------------dfe~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNE-----NSLPGNFFYMTTLRALYLGDN------------------DFEILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred hhhhhhcccccccc-----ccCCcchhHHHHHHHHHhcCC------------------CcccCChhhhhhcceeEEeecc
Confidence 55554432 1111 112224445566777777777 3345566777888888888888
Q ss_pred ecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCC---ccccceeccccccccccccc
Q 044247 166 YRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKL---TSLEDLYIAGMKSVKRVGNE 224 (333)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l---~~L~~L~l~~~~~l~~i~~~ 224 (333)
+...+ + |..++.+..|+.|++.+| .++.+|+ ++.+ .+=+.+.+..|+.+..+.+.
T Consensus 160 ndll~--l-pkeig~lt~lrelhiqgn-rl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 160 NDLLS--L-PKEIGDLTRLRELHIQGN-RLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred Cchhh--C-cHHHHHHHHHHHHhcccc-eeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence 88888 8 888988999999999998 4556665 4432 22244555566655555443
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.37 E-value=7.1e-13 Score=129.66 Aligned_cols=206 Identities=26% Similarity=0.284 Sum_probs=129.9
Q ss_pred hhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccC
Q 044247 7 TLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKL 86 (333)
Q Consensus 7 ~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l 86 (333)
.+..|+.|++||+++|..+..+|..|+.+=+||+|+++++ .+..+|.+++++..|.+|++..+.... ..+.....|
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~---~~~~i~~~L 641 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLE---SIPGILLEL 641 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccc---cccchhhhc
Confidence 3677999999999999888999999999999999999998 778999999999999999999887663 234555669
Q ss_pred ccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhc----cc--CCcc----cccccccccCCCCC
Q 044247 87 NLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAG----RR--ENEE----DEDERLLDALGPPP 156 (333)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~--~~~~----~~~~~~~~~l~~~~ 156 (333)
.+|++|.+..-. ..........+..+.+|+.+.+..... ...+... ++ .... .........+..+.
T Consensus 642 ~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~ 717 (889)
T KOG4658|consen 642 QSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLG 717 (889)
T ss_pred ccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeeccccccc
Confidence 999998887543 112233345566667777777654421 0000000 00 0000 01122334445566
Q ss_pred CccEEEEeeecCCCCccCchh-----hhc-CCCccEEEeecCCCCCCCCCCCCCccccceeccccccccccc
Q 044247 157 NLKELHIHEYRGRRNVVPKNW-----VMS-LTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVG 222 (333)
Q Consensus 157 ~L~~L~l~~~~~~~~~~~~~~-----~~~-~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~ 222 (333)
+|+.|.+.+|.+.+.. ..+ ... |+++..+.+..|....++.+....++|+.|++.+|..++.+.
T Consensus 718 ~L~~L~i~~~~~~e~~--~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 718 NLEELSILDCGISEIV--IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred CcceEEEEcCCCchhh--cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 6777777766664310 111 111 445555555555555554444445677777777776655543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=2.3e-13 Score=120.49 Aligned_cols=269 Identities=17% Similarity=0.115 Sum_probs=163.6
Q ss_pred EEeecCCCcc-cccCccccccccccEEecCCCCCc----ccccccccccccCceeeeEEEcCcc---CCCCCccccccCc
Q 044247 16 RVNVSGCSHL-RELPQGIGKLRKLMYLDNDYTDSL----RYLPVGIGELIRLRRVTKFVVCGGY---DRACSLGSLKKLN 87 (333)
Q Consensus 16 ~L~l~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~----~~~p~~i~~l~~L~~L~l~~~~~~~---~~~~~~~~l~~l~ 87 (333)
.|++..+... ...+..+..+++|+.|++++|... ..++..+...++++++++..+.... ........+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666533 345555677888999999999431 2345556677889999988765441 0011223456688
Q ss_pred cCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCC-CCccEEEEeee
Q 044247 88 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPP-PNLKELHIHEY 166 (333)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~ 166 (333)
+|+.|++.+..-.......+...... ++|++|++++|.+.+. ....+...+..+ ++|+.|++++|
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~-------------~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDR-------------GLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchH-------------HHHHHHHHHHhCCCCceEEEcCCC
Confidence 99999887644322222223223333 5699999999975431 222333455566 89999999998
Q ss_pred cCCCC---ccCchhhhcCCCccEEEeecCCCCCC----CC-CCCCCccccceecccccccccccccccCCCCCCCCCccc
Q 044247 167 RGRRN---VVPKNWVMSLTNLRVLHLFECRNCEH----LP-PLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVI 238 (333)
Q Consensus 167 ~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~----l~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~ 238 (333)
..... .+ ...+..+++|+.|++++|...+. ++ .+..+++|++|++++|. +.......+... +.
T Consensus 148 ~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~-------~~ 218 (319)
T cd00116 148 RLEGASCEAL-AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAET-------LA 218 (319)
T ss_pred cCCchHHHHH-HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHH-------hc
Confidence 86631 02 33455678999999999843321 11 13445799999999987 432221111110 45
Q ss_pred cCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCc----ccCCcccCCCCCcceEEEcccChhh
Q 044247 239 AFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCREL----KALPDHLLQKSTLQNLEIWGACHIL 309 (333)
Q Consensus 239 ~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l----~~l~~~~~~l~~L~~L~l~~~c~~l 309 (333)
.+++|++|++++|. +.+..............+.|++|++.+|... ..+...+..+++|+.+++ .++.--
T Consensus 219 ~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l-~~N~l~ 291 (319)
T cd00116 219 SLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL-RGNKFG 291 (319)
T ss_pred ccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC-CCCCCc
Confidence 78899999999963 4432211000000012489999999998543 123344555789999999 887643
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=7.4e-12 Score=120.73 Aligned_cols=217 Identities=16% Similarity=0.168 Sum_probs=144.7
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCc
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
|+.+|..+. .+|++|++++|. +..+|..+. ++|+.|++++| .+..+|..+. .+|+.|++++|.... .+
T Consensus 211 LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N~L~~----LP 278 (754)
T PRK15370 211 LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFHNKISC----LP 278 (754)
T ss_pred CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcCCccCc----cc
Confidence 356777665 589999999998 778887554 47999999999 5678887653 589999998887654 33
Q ss_pred cccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccE
Q 044247 81 GSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKE 160 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 160 (333)
..+. ++|+.|.+... .+..... .+ .++|+.|++++|.+. .++..+ .++|+.
T Consensus 279 ~~l~--~sL~~L~Ls~N-~Lt~LP~----~l--p~sL~~L~Ls~N~Lt------------------~LP~~l--~~sL~~ 329 (754)
T PRK15370 279 ENLP--EELRYLSVYDN-SIRTLPA----HL--PSGITHLNVQSNSLT------------------ALPETL--PPGLKT 329 (754)
T ss_pred cccC--CCCcEEECCCC-ccccCcc----cc--hhhHHHHHhcCCccc------------------cCCccc--ccccee
Confidence 3332 36777776542 1221111 11 146888888888532 222222 257889
Q ss_pred EEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccC
Q 044247 161 LHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAF 240 (333)
Q Consensus 161 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l 240 (333)
|++++|.... + |..+ +++|+.|++++| .+..+|. .-.++|+.|++++|. +..+|.. ..
T Consensus 330 L~Ls~N~Lt~--L-P~~l--~~sL~~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~N~-Lt~LP~~--------------l~ 387 (754)
T PRK15370 330 LEAGENALTS--L-PASL--PPELQVLDVSKN-QITVLPE-TLPPTITTLDVSRNA-LTNLPEN--------------LP 387 (754)
T ss_pred ccccCCcccc--C-Chhh--cCcccEEECCCC-CCCcCCh-hhcCCcCEEECCCCc-CCCCCHh--------------HH
Confidence 9998888776 7 6555 478999999998 4555664 123689999999987 6666543 12
Q ss_pred CCccEEeeccCccccccccCCccccccccCCCcceEecccCcC
Q 044247 241 PKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRE 283 (333)
Q Consensus 241 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 283 (333)
+.|+.|+++++ ++..++ ..+|.....++++..|++.+++.
T Consensus 388 ~sL~~LdLs~N-~L~~LP--~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 388 AALQIMQASRN-NLVRLP--ESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHHHhhccC-CcccCc--hhHHHHhhcCCCccEEEeeCCCc
Confidence 36888888884 555444 22334444568888888887653
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.21 E-value=1.3e-10 Score=111.77 Aligned_cols=227 Identities=19% Similarity=0.103 Sum_probs=130.1
Q ss_pred CcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCce
Q 044247 12 YNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQ 91 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 91 (333)
..-..|+++++. +..+|..+. ++|+.|++..| .++.+|.. +++|++|++++|.... .+.. .++|+.
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~Lts----LP~l---p~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQLTS----LPVL---PPGLLE 266 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCccCc----ccCc---ccccce
Confidence 446689999997 778998775 48999999998 67788763 5899999999987764 2222 245666
Q ss_pred eEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCC
Q 044247 92 CSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRN 171 (333)
Q Consensus 92 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 171 (333)
|++.... +... .. ...+|+.|++++|.+ ..++. ..++|+.|++++|....
T Consensus 267 L~Ls~N~-L~~L----p~---lp~~L~~L~Ls~N~L------------------t~LP~---~p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 267 LSIFSNP-LTHL----PA---LPSGLCKLWIFGNQL------------------TSLPV---LPPGLQELSVSDNQLAS- 316 (788)
T ss_pred eeccCCc-hhhh----hh---chhhcCEEECcCCcc------------------ccccc---cccccceeECCCCcccc-
Confidence 6654321 1111 11 125788899998853 22222 23678888888887766
Q ss_pred ccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCC-CCcc----ccCCCccEE
Q 044247 172 VVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTD-GSSV----IAFPKLKRL 246 (333)
Q Consensus 172 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~-~~~~----~~l~~L~~L 246 (333)
+ |.. ..+|+.|++++| .++.+|.+ ..+|+.|++++|. ++.+|........+.. ...+ ....+|+.|
T Consensus 317 -L-p~l---p~~L~~L~Ls~N-~L~~LP~l--p~~Lq~LdLS~N~-Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~L 387 (788)
T PRK15387 317 -L-PAL---PSELCKLWAYNN-QLTSLPTL--PSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKEL 387 (788)
T ss_pred -C-CCC---cccccccccccC-cccccccc--ccccceEecCCCc-cCCCCCCCcccceehhhccccccCcccccccceE
Confidence 5 442 345666677666 44445532 2467777777665 5544421000000000 0000 011356666
Q ss_pred eeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccC
Q 044247 247 RFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGAC 306 (333)
Q Consensus 247 ~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c 306 (333)
+++++ .+..++ . ..++|+.|+++++ .++.+|.. +.+|+.|++ .++
T Consensus 388 dLs~N-~Lt~LP------~---l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~L-s~N 432 (788)
T PRK15387 388 IVSGN-RLTSLP------V---LPSELKELMVSGN-RLTSLPML---PSGLLSLSV-YRN 432 (788)
T ss_pred EecCC-cccCCC------C---cccCCCEEEccCC-cCCCCCcc---hhhhhhhhh-ccC
Confidence 66653 333322 1 1246777777763 45556643 345666666 543
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=1.4e-11 Score=120.70 Aligned_cols=189 Identities=26% Similarity=0.311 Sum_probs=127.5
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
..+|.+|+.|-+||+|+++++. +..+|..++++++|.+|++..+.....+|.....+++|++|.+....... ......
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~l~ 662 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-DKLLLK 662 (889)
T ss_pred CcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-chhhHH
Confidence 5799999999999999999999 88999999999999999999987766666556679999999998765221 133455
Q ss_pred ccccCccCceeEecCCCC--CC-------------------ChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCC
Q 044247 82 SLKKLNLLRQCSIDGLGG--VS-------------------DAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRREN 140 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~--~~-------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 140 (333)
++.++.+|+.+....... +. .........+..+.+|+.|.+.++...+..
T Consensus 663 el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~--------- 733 (889)
T KOG4658|consen 663 ELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIV--------- 733 (889)
T ss_pred hhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhh---------
Confidence 566666666655432111 00 001112234555788999999888532211
Q ss_pred ccccccccccc--CC-CCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccc
Q 044247 141 EEDEDERLLDA--LG-PPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLED 209 (333)
Q Consensus 141 ~~~~~~~~~~~--l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~ 209 (333)
...... .. .++++..+.+.+|.+.. . +.|....++|+.|.+.+|..+++..+ ...+..++.
T Consensus 734 -----~~~~~~~~~~~~f~~l~~~~~~~~~~~r--~-l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 734 -----IEWEESLIVLLCFPNLSKVSILNCHMLR--D-LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred -----cccccccchhhhHHHHHHHHhhcccccc--c-cchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 111111 11 13466666677777777 5 67777899999999999987776544 444444554
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=1.2e-12 Score=112.58 Aligned_cols=90 Identities=22% Similarity=0.231 Sum_probs=46.4
Q ss_pred Ccccc-hhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCccccccc-ccccccCceeeeEEEcCccCCCCC
Q 044247 2 EKLPE-TLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFVVCGGYDRACS 79 (333)
Q Consensus 2 ~~lp~-~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~ 79 (333)
+.||. .++.+++|+.|+++.|.....-|.++.++++|..|-+.+++.++.+|.+ ++.+..|+.|.+.-|... ...
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~---Cir 156 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN---CIR 156 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc---chh
Confidence 34442 4555666666666666533344555666666666666554455555544 555666666555444433 222
Q ss_pred ccccccCccCceeEe
Q 044247 80 LGSLKKLNLLRQCSI 94 (333)
Q Consensus 80 ~~~l~~l~~L~~L~l 94 (333)
...+..|+++..|++
T Consensus 157 ~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSL 171 (498)
T ss_pred HHHHHHhhhcchhcc
Confidence 333444444444443
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.03 E-value=4.2e-12 Score=110.05 Aligned_cols=162 Identities=16% Similarity=0.185 Sum_probs=96.7
Q ss_pred CCCCCccEEEEeeecCCCCccCchhhh-cCCCccEEEeecCCCCCCCC--C-CCCCccccceecccccccccccccccCC
Q 044247 153 GPPPNLKELHIHEYRGRRNVVPKNWVM-SLTNLRVLHLFECRNCEHLP--P-LGKLTSLEDLYIAGMKSVKRVGNEFLGV 228 (333)
Q Consensus 153 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~l~--~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 228 (333)
..+..|+++..+++....... ...++ +.++|+.|-++.|...++.- . -.+++.|+.+++..|..+.+- .+..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~s- 366 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEV-LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLAS- 366 (483)
T ss_pred hhhhHhhhhcccCCCCCchHH-HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhh-
Confidence 345677777777766544111 11122 57788888888886554422 2 335677888888877533221 1111
Q ss_pred CCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCccc-CCcccCCCCCcceEEEcccCh
Q 044247 229 ESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKA-LPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 229 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~~c~ 307 (333)
...++|.|+++.++.|....+-.+. ...........|+.+++.+|+.+++ .-..+..+++|+.+++ .+|.
T Consensus 367 -------ls~~C~~lr~lslshce~itD~gi~-~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l-~~~q 437 (483)
T KOG4341|consen 367 -------LSRNCPRLRVLSLSHCELITDEGIR-HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL-IDCQ 437 (483)
T ss_pred -------hccCCchhccCChhhhhhhhhhhhh-hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee-echh
Confidence 1467888888888887655443100 0011123667888889999988763 3345666889999999 9888
Q ss_pred hhHhhcccCCCCCCccccCcCceecC
Q 044247 308 ILQERNREETGEDWPMIRHIPDIYIP 333 (333)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~i~~~~~~ 333 (333)
.++.--... -..|+|+++++
T Consensus 438 ~vtk~~i~~------~~~~lp~i~v~ 457 (483)
T KOG4341|consen 438 DVTKEAISR------FATHLPNIKVH 457 (483)
T ss_pred hhhhhhhHH------HHhhCccceeh
Confidence 765432111 14677777664
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=3.5e-10 Score=98.85 Aligned_cols=180 Identities=17% Similarity=0.043 Sum_probs=102.4
Q ss_pred cCCCcccEEeecCCCcccccC--ccccccccccEEecCCCCCccc---ccccccccccCceeeeEEEcCccCCCCCcccc
Q 044247 9 CELYNLERVNVSGCSHLRELP--QGIGKLRKLMYLDNDYTDSLRY---LPVGIGELIRLRRVTKFVVCGGYDRACSLGSL 83 (333)
Q Consensus 9 ~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~---~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 83 (333)
.++.+|+...++++. ....+ .....|++++.|+++.| .+.. +..-...+++|+.|+++.|.... ......-
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSN--FISSNTT 193 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccC--Cccccch
Confidence 467889999999988 55544 35667999999999998 3332 22335689999999999887664 1111111
Q ss_pred ccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEE
Q 044247 84 KKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHI 163 (333)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 163 (333)
..+++++.|.++.|.- . ...+...+..+|+|+.|.+..|. ..........-+..|+.|+|
T Consensus 194 ~~l~~lK~L~l~~CGl-s--~k~V~~~~~~fPsl~~L~L~~N~-----------------~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGL-S--WKDVQWILLTFPSLEVLYLEANE-----------------IILIKATSTKILQTLQELDL 253 (505)
T ss_pred hhhhhhheEEeccCCC-C--HHHHHHHHHhCCcHHHhhhhccc-----------------ccceecchhhhhhHHhhccc
Confidence 2455666677766543 2 12344455667777777777772 00010111122345666666
Q ss_pred eeecCCCCccCc--hhhhcCCCccEEEeecCCCCCCC--CC------CCCCccccceeccccc
Q 044247 164 HEYRGRRNVVPK--NWVMSLTNLRVLHLFECRNCEHL--PP------LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 164 ~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~l--~~------~~~l~~L~~L~l~~~~ 216 (333)
+++.... + + ...+.++.|+.|.++.|. +.++ |+ ...+++|++|.+..|+
T Consensus 254 s~N~li~--~-~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 254 SNNNLID--F-DQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cCCcccc--c-ccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 6655555 3 3 223356666666666552 2221 11 1335555666555555
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.90 E-value=6.7e-11 Score=102.70 Aligned_cols=263 Identities=18% Similarity=0.173 Sum_probs=124.2
Q ss_pred cccEEeecCCCccc--ccCccccccccccEEecCCCCCccccc--ccccccccCceeeeEEEcCccCCCCCccc-cccCc
Q 044247 13 NLERVNVSGCSHLR--ELPQGIGKLRKLMYLDNDYTDSLRYLP--VGIGELIRLRRVTKFVVCGGYDRACSLGS-LKKLN 87 (333)
Q Consensus 13 ~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~l~ 87 (333)
.|+.|.+++|...+ .+-.....+|++++|.+.+|..++... ..-..+++|++|++..|.... ...... ...++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT--~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT--DVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH--HHHHHHHHHhhh
Confidence 46667777776442 333434557777777777765444311 111346666666666544332 112221 12344
Q ss_pred cCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeec
Q 044247 88 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYR 167 (333)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (333)
+|.++.+..+..+.. ..+.....+++.++.+...+|. .. ....+...-..+.-+..+++..|.
T Consensus 217 kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~----e~-----------~le~l~~~~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCL----EL-----------ELEALLKAAAYCLEILKLNLQHCN 279 (483)
T ss_pred hHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccc----cc-----------cHHHHHHHhccChHhhccchhhhc
Confidence 555555555444332 2333344455555555554542 00 111111111122334444444444
Q ss_pred CCCCccCch-hh--hcCCCccEEEeecCCCCCCCCC---CCCCccccceecccccccccccccccCCCCCCCCCccccCC
Q 044247 168 GRRNVVPKN-WV--MSLTNLRVLHLFECRNCEHLPP---LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFP 241 (333)
Q Consensus 168 ~~~~~~~~~-~~--~~~~~L~~L~l~~~~~~~~l~~---~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~ 241 (333)
..+ - .+ |. ..+..|+.|..++|...++... -.++++|+.+.+..|+.+........+ .+.+
T Consensus 280 ~lT--D-~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----------rn~~ 346 (483)
T KOG4341|consen 280 QLT--D-EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----------RNCP 346 (483)
T ss_pred ccc--c-hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----------cCCh
Confidence 333 1 11 11 1455666666666655444322 224566666666666655444333332 3556
Q ss_pred CccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccC-----CcccCCCCCcceEEEcccChhhHhh
Q 044247 242 KLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKAL-----PDHLLQKSTLQNLEIWGACHILQER 312 (333)
Q Consensus 242 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~~c~~l~~~ 312 (333)
.|+.+++..|....+-. +-.-...+|.|+.+++++|..++.. .....+...|+.+.+ ++||.+++.
T Consensus 347 ~Le~l~~e~~~~~~d~t----L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL-~n~p~i~d~ 417 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGT----LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLEL-DNCPLITDA 417 (483)
T ss_pred hhhhhcccccceehhhh----HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeee-cCCCCchHH
Confidence 66666666654332221 1111235666666666666655533 222334555666666 666666554
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=1.4e-09 Score=86.34 Aligned_cols=128 Identities=18% Similarity=0.282 Sum_probs=50.4
Q ss_pred CCCCCCccEEEEeeecCCCCccCchhhh-cCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCC
Q 044247 152 LGPPPNLKELHIHEYRGRRNVVPKNWVM-SLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVES 230 (333)
Q Consensus 152 l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 230 (333)
+.++.++++|+++++.... + ..++ .+.+|+.|++++| .++.++.+..++.|+.|++++|. ++.++..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--I--e~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l----- 83 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--I--ENLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGL----- 83 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHH-----
T ss_pred ccccccccccccccccccc--c--cchhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccch-----
Confidence 3345678999999999887 4 4565 5889999999999 67778888889999999999998 77664321
Q ss_pred CCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCc----ccCCCCCcceEEE
Q 044247 231 DTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD----HLLQKSTLQNLEI 302 (333)
Q Consensus 231 ~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l 302 (333)
...+|+|++|++++ +++.++..- ..+..+|+|+.|++.++|.-.. +. .+..+|+|+.||-
T Consensus 84 ------~~~lp~L~~L~L~~-N~I~~l~~l----~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 ------DKNLPNLQELYLSN-NKISDLNEL----EPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp ------HHH-TT--EEE-TT-S---SCCCC----GGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred ------HHhCCcCCEEECcC-CcCCChHHh----HHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 24689999999998 456555421 2245789999999999886532 22 3445899999877
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.83 E-value=3.7e-10 Score=96.02 Aligned_cols=250 Identities=17% Similarity=0.153 Sum_probs=143.6
Q ss_pred hcCCCcccEEeecCCCcc----cccCccccccccccEEecCCCCCcc----ccc-------ccccccccCceeeeEEEcC
Q 044247 8 LCELYNLERVNVSGCSHL----RELPQGIGKLRKLMYLDNDYTDSLR----YLP-------VGIGELIRLRRVTKFVVCG 72 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~----~~lp~~i~~l~~L~~L~l~~~~~~~----~~p-------~~i~~l~~L~~L~l~~~~~ 72 (333)
+..+..+..+++++|... ..+...+.+.++|+..++++- ... .+| ..+...++|++|++++|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345667777888877632 234445666677777777653 111 122 2234556777777777766
Q ss_pred ccCCCCCccc----cccCccCceeEecCCCCCCChhhH---------HHHhhcccCCccceEEeecCCCCCchhhhcccC
Q 044247 73 GYDRACSLGS----LKKLNLLRQCSIDGLGGVSDAGEA---------RRAELEKKKNLFDLELDFDNLRDGDEEQAGRRE 139 (333)
Q Consensus 73 ~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~---------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 139 (333)
.. ..++. +.+...|++|.++++.--+..+.. ...-..+-++|+.+...+|.+.+.
T Consensus 105 G~---~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~--------- 172 (382)
T KOG1909|consen 105 GP---KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG--------- 172 (382)
T ss_pred Cc---cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc---------
Confidence 52 22222 345566777666654432322222 122334457888888888876543
Q ss_pred CcccccccccccCCCCCCccEEEEeeecCCCCcc--CchhhhcCCCccEEEeecCCCCCC----CC-CCCCCccccceec
Q 044247 140 NEEDEDERLLDALGPPPNLKELHIHEYRGRRNVV--PKNWVMSLTNLRVLHLFECRNCEH----LP-PLGKLTSLEDLYI 212 (333)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~----l~-~~~~l~~L~~L~l 212 (333)
....+...+..++.|+.+.+..+......+ ....+.++++|+.|+|.+|..... +. .+..+++|++|++
T Consensus 173 ----ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 173 ----GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ----cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 334555667777889999888766544101 012344789999999998843321 11 2566788999999
Q ss_pred ccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcC
Q 044247 213 AGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRE 283 (333)
Q Consensus 213 ~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 283 (333)
++|. ++.-....+...- ....|.|+.|.+.++.-=.+-. ..+...+...|.|++|++++|..
T Consensus 249 ~dcl-l~~~Ga~a~~~al------~~~~p~L~vl~l~gNeIt~da~--~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCL-LENEGAIAFVDAL------KESAPSLEVLELAGNEITRDAA--LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccc-cccccHHHHHHHH------hccCCCCceeccCcchhHHHHH--HHHHHHHhcchhhHHhcCCcccc
Confidence 9887 4433211111100 2357899999998863211111 01112233579999999998765
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.3e-10 Score=95.35 Aligned_cols=182 Identities=17% Similarity=0.170 Sum_probs=118.4
Q ss_pred cccEEecCCCCCccc--ccccccccccCceeeeEEEcCccCCCCCccccccCccCceeEecCCCCCCChhhHHHHhhccc
Q 044247 37 KLMYLDNDYTDSLRY--LPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKK 114 (333)
Q Consensus 37 ~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~ 114 (333)
.|++||++.. .++. +-.-+..+.+|+.|.+.++... ......+.+-..|..+++..+.++.. .+....+..|
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~Ld---D~I~~~iAkN~~L~~lnlsm~sG~t~--n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLD---DPIVNTIAKNSNLVRLNLSMCSGFTE--NALQLLLSSC 259 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccC---cHHHHHHhccccceeeccccccccch--hHHHHHHHhh
Confidence 4778888765 3332 1122456777888877776655 34455566667777777777776654 4556678889
Q ss_pred CCccceEEeecCCCCCchhhhcccCCcccccccccccC-CCCCCccEEEEeeecCCC--CccCchhhhcCCCccEEEeec
Q 044247 115 KNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDAL-GPPPNLKELHIHEYRGRR--NVVPKNWVMSLTNLRVLHLFE 191 (333)
Q Consensus 115 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~ 191 (333)
+.|.+|++++|.+... .+..++ +--++|+.|+++++.-.- +++ ......+|+|..|++++
T Consensus 260 s~L~~LNlsWc~l~~~----------------~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTE----------------KVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSD 322 (419)
T ss_pred hhHhhcCchHhhccch----------------hhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeecccc
Confidence 9999999999954321 111111 122578888998864222 112 22334799999999999
Q ss_pred CCCCCC--CCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCc
Q 044247 192 CRNCEH--LPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMS 252 (333)
Q Consensus 192 ~~~~~~--l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 252 (333)
|..+.. +..+..++.|++|.++.|..+ +|+.++. +...|.|.+|++.+|-
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~---------l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE---------LNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee---------eccCcceEEEEecccc
Confidence 977665 222677889999999999754 3443332 5677888888888863
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.2e-09 Score=95.61 Aligned_cols=187 Identities=16% Similarity=0.054 Sum_probs=129.1
Q ss_pred hhcCCCcccEEeecCCCcc--cccCccccccccccEEecCCCCCccccccc-ccccccCceeeeEEEcCccCCCCCcccc
Q 044247 7 TLCELYNLERVNVSGCSHL--RELPQGIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFVVCGGYDRACSLGSL 83 (333)
Q Consensus 7 ~l~~l~~L~~L~l~~~~~~--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l 83 (333)
....|++++.|+++.|-.. ..+-.....+|+|+.|+++.|...--.... -..+++|+.|.++.|+..+ .......
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~--k~V~~~~ 218 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW--KDVQWIL 218 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH--HHHHHHH
Confidence 5677999999999999733 344555678999999999998332212121 3478899999999999886 5555556
Q ss_pred ccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEE
Q 044247 84 KKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHI 163 (333)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 163 (333)
..++++..|.+..-+.+.... ....-+..|++|++++|++ ...+.......++.|+.|.+
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~----~~~~i~~~L~~LdLs~N~l----------------i~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKA----TSTKILQTLQELDLSNNNL----------------IDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred HhCCcHHHhhhhcccccceec----chhhhhhHHhhccccCCcc----------------cccccccccccccchhhhhc
Confidence 677888887665432211100 1122346899999999964 22333456778899999999
Q ss_pred eeecCCCCccCchh-----hhcCCCccEEEeecCCC--CCCCCCCCCCccccceeccccc
Q 044247 164 HEYRGRRNVVPKNW-----VMSLTNLRVLHLFECRN--CEHLPPLGKLTSLEDLYIAGMK 216 (333)
Q Consensus 164 ~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~--~~~l~~~~~l~~L~~L~l~~~~ 216 (333)
+.+...+..+ |+. ...+++|++|++..|.. +..+..+..+++|+.|.+..++
T Consensus 279 s~tgi~si~~-~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 279 SSTGIASIAE-PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccCcchhcC-CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 9887766333 333 34799999999999954 4444456667888888877665
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=5.1e-10 Score=95.22 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=9.7
Q ss_pred cccCCCCCCccEEEEeeecC
Q 044247 149 LDALGPPPNLKELHIHEYRG 168 (333)
Q Consensus 149 ~~~l~~~~~L~~L~l~~~~~ 168 (333)
..++..+++|++|++++|.+
T Consensus 206 ~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 206 AEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred HHHHHhCCcceeeecccchh
Confidence 34444455555555555443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=2.5e-09 Score=89.53 Aligned_cols=224 Identities=19% Similarity=0.115 Sum_probs=115.7
Q ss_pred hcCCCcccEEeecCCCcc--------cccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCC
Q 044247 8 LCELYNLERVNVSGCSHL--------RELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACS 79 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~--------~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~ 79 (333)
+.-+..|.+|.+++...- ..+|-.+.-.++|..+.++.| ..+.+-.-...-+.|+++.+.......
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~-~~~~i~~~~~~kptl~t~~v~~s~~~~----- 251 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSAL-STENIVDIELLKPTLQTICVHNTTIQD----- 251 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeecc-chhheeceeecCchhheeeeecccccc-----
Confidence 334667888888876421 234444556789999999998 334443333455788888876654432
Q ss_pred ccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCcc
Q 044247 80 LGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLK 159 (333)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 159 (333)
.+.+--++++....... ..... ......+...+.|+++++++| ....+.++..-.|.++
T Consensus 252 ~~~l~pe~~~~D~~~~E-~~t~~--G~~~~~~dTWq~LtelDLS~N------------------~I~~iDESvKL~Pkir 310 (490)
T KOG1259|consen 252 VPSLLPETILADPSGSE-PSTSN--GSALVSADTWQELTELDLSGN------------------LITQIDESVKLAPKLR 310 (490)
T ss_pred cccccchhhhcCccCCC-CCccC--CceEEecchHhhhhhcccccc------------------chhhhhhhhhhcccee
Confidence 11111111111111000 00000 001112333456777777777 3344445555556677
Q ss_pred EEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCccc
Q 044247 160 ELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVI 238 (333)
Q Consensus 160 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~ 238 (333)
.|+++.|.... + +.+..+++|+.|++++| .+..+.. -..+-+.+.|.+++|. ++.+.. +.
T Consensus 311 ~L~lS~N~i~~--v--~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG-------------L~ 371 (490)
T KOG1259|consen 311 RLILSQNRIRT--V--QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNK-IETLSG-------------LR 371 (490)
T ss_pred EEeccccceee--e--hhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh-------------hH
Confidence 77777666665 3 33556667777777766 2333222 1234456666666665 333321 44
Q ss_pred cCCCccEEeeccCccccccccCCccccccccCCCcceEecccCc
Q 044247 239 AFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCR 282 (333)
Q Consensus 239 ~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 282 (333)
.+-+|..|++.++ +++.+.--. .++.+|+|+.+.+.+++
T Consensus 372 KLYSLvnLDl~~N-~Ie~ldeV~----~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 372 KLYSLVNLDLSSN-QIEELDEVN----HIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhheecccccc-chhhHHHhc----ccccccHHHHHhhcCCC
Confidence 5556666666663 343333111 13356677776666654
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=4.8e-09 Score=87.81 Aligned_cols=126 Identities=19% Similarity=0.224 Sum_probs=61.2
Q ss_pred CCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCC
Q 044247 155 PPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDG 234 (333)
Q Consensus 155 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 234 (333)
...|+.++++.|.... + ...+.-.|+++.|++++|. +..+..+..+++|..|++++|. +..+...
T Consensus 283 Wq~LtelDLS~N~I~~--i-DESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~-Ls~~~Gw---------- 347 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ--I-DESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNL-LAECVGW---------- 347 (490)
T ss_pred Hhhhhhccccccchhh--h-hhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccch-hHhhhhh----------
Confidence 3455566666655555 4 4445455666666666652 2233334555666666666655 3322111
Q ss_pred CccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCC--cccCCCCCcceEEEcccCh
Q 044247 235 SSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALP--DHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 235 ~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~~c~ 307 (333)
-..+-+.++|.++++ .++++. ....+-+|..|++++ +++..+. ..++++|.|+.+.+ .++|
T Consensus 348 --h~KLGNIKtL~La~N-~iE~LS-------GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L-~~NP 410 (490)
T KOG1259|consen 348 --HLKLGNIKTLKLAQN-KIETLS-------GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRL-TGNP 410 (490)
T ss_pred --HhhhcCEeeeehhhh-hHhhhh-------hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhh-cCCC
Confidence 123445555655552 222222 112445556666665 3333222 14555666666666 5554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=3.9e-08 Score=89.76 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=26.9
Q ss_pred CcccEEeecCCCcccccCccccccc-cccEEecCCCCCcccccccccccccCceeeeEEEcC
Q 044247 12 YNLERVNVSGCSHLRELPQGIGKLR-KLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCG 72 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~ 72 (333)
+.++.|++.++. +..+|....... +|+.|++++| .+..+|..++.+++|+.|++..|..
T Consensus 116 ~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 116 TNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred cceeEEecCCcc-cccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchh
Confidence 344444444444 444444344442 4555555444 3344433344445555555444444
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.52 E-value=1.3e-08 Score=91.96 Aligned_cols=156 Identities=22% Similarity=0.258 Sum_probs=107.9
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCc
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
|+.+|..++.+..|.+|+++.|. +..+|..++.|+ |+.|.++.| +++.+|.+++....|.+|+.+.|.+.. .+
T Consensus 110 ~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~s----lp 182 (722)
T KOG0532|consen 110 IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQS----LP 182 (722)
T ss_pred ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhh----ch
Confidence 45677778888888888888887 777787777776 777777776 677788888877788888887777654 67
Q ss_pred cccccCccCceeEecC--CCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCc
Q 044247 81 GSLKKLNLLRQCSIDG--LGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNL 158 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 158 (333)
..+..+.+|+.|.+.. +..++ ..+..+ .|..|++++| ....++-.|..+.+|
T Consensus 183 sql~~l~slr~l~vrRn~l~~lp-------~El~~L-pLi~lDfScN------------------kis~iPv~fr~m~~L 236 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNHLEDLP-------EELCSL-PLIRLDFSCN------------------KISYLPVDFRKMRHL 236 (722)
T ss_pred HHhhhHHHHHHHHHhhhhhhhCC-------HHHhCC-ceeeeecccC------------------ceeecchhhhhhhhh
Confidence 7777777777655532 22222 234322 5777888887 456667777888888
Q ss_pred cEEEEeeecCCCCccCchhhh---cCCCccEEEeecC
Q 044247 159 KELHIHEYRGRRNVVPKNWVM---SLTNLRVLHLFEC 192 (333)
Q Consensus 159 ~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~ 192 (333)
++|.|.+|.... - |..++ ..+-.++|+...|
T Consensus 237 q~l~LenNPLqS--P-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 237 QVLQLENNPLQS--P-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeeccCCCCC--C-hHHHHhccceeeeeeecchhc
Confidence 888888877766 2 44444 3344567777666
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=7.7e-09 Score=86.46 Aligned_cols=170 Identities=19% Similarity=0.222 Sum_probs=114.4
Q ss_pred hHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccC-chhhhcCCC
Q 044247 105 EARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVP-KNWVMSLTN 183 (333)
Q Consensus 105 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~ 183 (333)
..+...++.|.+|+.|.+.+.. ..+.+...++.-.+|+.|+++.|.+.++ .+ .-.+.++..
T Consensus 200 stl~~iLs~C~kLk~lSlEg~~-----------------LdD~I~~~iAkN~~L~~lnlsm~sG~t~-n~~~ll~~scs~ 261 (419)
T KOG2120|consen 200 STLHGILSQCSKLKNLSLEGLR-----------------LDDPIVNTIAKNSNLVRLNLSMCSGFTE-NALQLLLSSCSR 261 (419)
T ss_pred HHHHHHHHHHHhhhhccccccc-----------------cCcHHHHHHhccccceeeccccccccch-hHHHHHHHhhhh
Confidence 3445567778888888888886 4455566677778999999998887763 20 123457888
Q ss_pred ccEEEeecCCCCCCCCC--CC-CCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccC
Q 044247 184 LRVLHLFECRNCEHLPP--LG-KLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLG 260 (333)
Q Consensus 184 L~~L~l~~~~~~~~l~~--~~-~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~ 260 (333)
|..|+++.|...++.-. +. --++|..|.++++... +...-+..- ...+|+|..|++++|..++.
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--l~~sh~~tL-------~~rcp~l~~LDLSD~v~l~~---- 328 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--LQKSHLSTL-------VRRCPNLVHLDLSDSVMLKN---- 328 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--hhhhHHHHH-------HHhCCceeeeccccccccCc----
Confidence 99999998843332211 11 1367888999887632 211111111 56789999999999877644
Q ss_pred CccccccccCCCcceEecccCcCcc-cCCcccCCCCCcceEEEcccCh
Q 044247 261 TAIKGEIIIMPRLSSLSIQSCRELK-ALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
..-..+..|+.|++|+++.|=.+. .-...+.+.|+|..|++ .+|-
T Consensus 329 -~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv-~g~v 374 (419)
T KOG2120|consen 329 -DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDV-FGCV 374 (419)
T ss_pred -hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEe-cccc
Confidence 222346689999999999987653 22235667899999999 8774
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=1.6e-08 Score=91.40 Aligned_cols=179 Identities=21% Similarity=0.215 Sum_probs=128.8
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
..+|..++.|..|+.+.+..|. +..+|..+.++..|.+|+++.| .+..+|..+..++ |+.|-+.+|.... .+.
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~~----lp~ 160 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLTS----LPE 160 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCcccc----CCc
Confidence 5678888888888888888887 7888888999999999999888 5677787776655 7888887777654 677
Q ss_pred ccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEE
Q 044247 82 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKEL 161 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 161 (333)
+++.+.+|..|+....+. ......+..+.+|+.|++..|+ ...++..+. .-.|..|
T Consensus 161 ~ig~~~tl~~ld~s~nei-----~slpsql~~l~slr~l~vrRn~------------------l~~lp~El~-~LpLi~l 216 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEI-----QSLPSQLGYLTSLRDLNVRRNH------------------LEDLPEELC-SLPLIRL 216 (722)
T ss_pred ccccchhHHHhhhhhhhh-----hhchHHhhhHHHHHHHHHhhhh------------------hhhCCHHHh-CCceeee
Confidence 777666666665543221 1233467777888888888884 345555555 3468889
Q ss_pred EEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC----CCCCccccceecccc
Q 044247 162 HIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP----LGKLTSLEDLYIAGM 215 (333)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~----~~~l~~L~~L~l~~~ 215 (333)
++++|+... + |..|..+..|++|-|.+|. ++.-|. -|...-.++|+..-|
T Consensus 217 DfScNkis~--i-Pv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 217 DFSCNKISY--L-PVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecccCceee--c-chhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 999998888 8 8888899999999999884 444443 233334566666655
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=1.7e-07 Score=85.61 Aligned_cols=163 Identities=25% Similarity=0.273 Sum_probs=104.9
Q ss_pred CCcccchhcCCC-cccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCC
Q 044247 1 IEKLPETLCELY-NLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACS 79 (333)
Q Consensus 1 ~~~lp~~l~~l~-~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~ 79 (333)
+.++|.....+. +|+.|+++++. +..+|..++.+++|+.|+++.| .+..+|...+..++|+.|+++++.... .
T Consensus 128 i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~----l 201 (394)
T COG4886 128 ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISD----L 201 (394)
T ss_pred cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCcccc----C
Confidence 457888888885 99999999999 8888877999999999999999 678888766688999999999888764 3
Q ss_pred ccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCcc
Q 044247 80 LGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLK 159 (333)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 159 (333)
+..+.....|+.+.+..-..+. ....+..+.++..+.+..+. .......+..+++++
T Consensus 202 ~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~------------------~~~~~~~~~~l~~l~ 258 (394)
T COG4886 202 PPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNK------------------LEDLPESIGNLSNLE 258 (394)
T ss_pred chhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCce------------------eeeccchhccccccc
Confidence 4333333345544443221000 11133444555555554442 222234455555566
Q ss_pred EEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCC
Q 044247 160 ELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCE 196 (333)
Q Consensus 160 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 196 (333)
.|+++++.... + +. +..+.+++.|+++++....
T Consensus 259 ~L~~s~n~i~~--i-~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 259 TLDLSNNQISS--I-SS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred eeccccccccc--c-cc-ccccCccCEEeccCccccc
Confidence 66666666655 3 32 5556666666666664433
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.37 E-value=2.2e-07 Score=73.77 Aligned_cols=102 Identities=22% Similarity=0.268 Sum_probs=24.9
Q ss_pred cccEEeecCCCcccccCcccc-ccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcccc-ccCccCc
Q 044247 13 NLERVNVSGCSHLRELPQGIG-KLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSL-KKLNLLR 90 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~l~~L~ 90 (333)
+++.|+++++. +..+.. ++ .+.+|+.|++++| .+..++ ++..++.|++|++++|.+.. ....+ ..+++|+
T Consensus 20 ~~~~L~L~~n~-I~~Ie~-L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~----i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGNQ-ISTIEN-LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISS----ISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------S---TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-----CHHHHHH-TT--
T ss_pred ccccccccccc-cccccc-hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCc----cccchHHhCCcCC
Confidence 45666666665 444332 43 3556666666666 444442 35556666666666665542 21222 2355555
Q ss_pred eeEecC--CCCCCChhhHHHHhhcccCCccceEEeecCC
Q 044247 91 QCSIDG--LGGVSDAGEARRAELEKKKNLFDLELDFDNL 127 (333)
Q Consensus 91 ~L~l~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 127 (333)
.|.+.. +..+... ..+..+++|+.|++.+|++
T Consensus 92 ~L~L~~N~I~~l~~l-----~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 92 ELYLSNNKISDLNEL-----EPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EEE-TTS---SCCCC-----GGGGG-TT--EEE-TT-GG
T ss_pred EEECcCCcCCChHHh-----HHHHcCCCcceeeccCCcc
Confidence 555532 2122111 2344556666666666544
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.35 E-value=1.2e-08 Score=88.41 Aligned_cols=228 Identities=16% Similarity=0.184 Sum_probs=117.3
Q ss_pred cchhcCCCcccEEeecCCCcccccCcc-ccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCCCccc
Q 044247 5 PETLCELYNLERVNVSGCSHLRELPQG-IGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRACSLGS 82 (333)
Q Consensus 5 p~~l~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 82 (333)
|+.+.+++.|-.|-+.+++.+..+|.. +++|..|+.|.+..| .+.-+ ...+..+++|..|.++++........ .
T Consensus 108 p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~---t 183 (498)
T KOG4237|consen 108 PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKG---T 183 (498)
T ss_pred hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccc---c
Confidence 567888888888888885558888864 777889999888887 33333 34578888888888888876531122 2
Q ss_pred cccCccCceeEecC--------CCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhc-----cc----CCccccc
Q 044247 83 LKKLNLLRQCSIDG--------LGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAG-----RR----ENEEDED 145 (333)
Q Consensus 83 l~~l~~L~~L~l~~--------~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~----~~~~~~~ 145 (333)
+..+..++.+++.. +....+........++.........+.+..+...+..++. .+ .... ..
T Consensus 184 f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~-~d 262 (498)
T KOG4237|consen 184 FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF-PD 262 (498)
T ss_pred ccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC-cC
Confidence 33333333332211 1111111111111111111111111111100000000000 00 0000 01
Q ss_pred ccc-cccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceeccccccccccc
Q 044247 146 ERL-LDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVG 222 (333)
Q Consensus 146 ~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~ 222 (333)
... ...|..+++|++|++++|.... +.+.+|.....++.|.|..| .++.+.. +.++..|+.|++.+|+ ++.+.
T Consensus 263 ~~cP~~cf~~L~~L~~lnlsnN~i~~--i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~ 338 (498)
T KOG4237|consen 263 SICPAKCFKKLPNLRKLNLSNNKITR--IEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVA 338 (498)
T ss_pred CcChHHHHhhcccceEeccCCCccch--hhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCe-eEEEe
Confidence 111 1225566777777777777666 54566777777777777776 3443333 5566677777777776 55554
Q ss_pred ccccCCCCCCCCCccccCCCccEEeeccCc
Q 044247 223 NEFLGVESDTDGSSVIAFPKLKRLRFWSMS 252 (333)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 252 (333)
... +..+..|.+|.+-+++
T Consensus 339 ~~a-----------F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 339 PGA-----------FQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccc-----------ccccceeeeeehccCc
Confidence 332 3445566666665543
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1e-06 Score=57.35 Aligned_cols=58 Identities=28% Similarity=0.334 Sum_probs=48.4
Q ss_pred CcccEEeecCCCcccccCc-cccccccccEEecCCCCCcccccc-cccccccCceeeeEEEc
Q 044247 12 YNLERVNVSGCSHLRELPQ-GIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVC 71 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~ 71 (333)
++|++|++++|. +..+|. .+.++++|++|++++| .+..++. .+..+++|++|++.+|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 578999999997 777774 6788999999999988 6666664 57899999999998764
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=1.1e-06 Score=57.26 Aligned_cols=57 Identities=23% Similarity=0.391 Sum_probs=31.6
Q ss_pred CCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccC
Q 044247 182 TNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSM 251 (333)
Q Consensus 182 ~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 251 (333)
|+|++|++++| .+..+++ +.++++|++|++++|. ++.++... +..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~-----------f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDA-----------FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETTT-----------TTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHHH-----------HcCCCCCCEEeCcCC
Confidence 35566666665 4444443 5556666666666555 45554332 345666666666654
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.02 E-value=7.6e-06 Score=78.81 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=72.2
Q ss_pred cccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCcee
Q 044247 13 NLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQC 92 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 92 (333)
.++.|++.++...+.+|..++.+++|+.|++++|.....+|..++.+++|+.|++.+|... +..+..+.++++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls---g~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN---GSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC---CCCchHHhcCCCCCEE
Confidence 3677888888755678888888888888888888555567777888888888888887765 4566677788888887
Q ss_pred EecCCCCCCChhhHHHHhhcc-cCCccceEEeecC
Q 044247 93 SIDGLGGVSDAGEARRAELEK-KKNLFDLELDFDN 126 (333)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~ 126 (333)
++....-..... ..+.. ..++..+++.+|.
T Consensus 496 ~Ls~N~l~g~iP----~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNGNSLSGRVP----AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ECcCCcccccCC----hHHhhccccCceEEecCCc
Confidence 775432111111 12222 2355677777774
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=2.9e-05 Score=69.55 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=82.0
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLN 87 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 87 (333)
+..+.++++|++++|. +..+|. -.++|++|.+++|..++.+|..+ ..+|++|++.+|... ...+.
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L---~sLP~------ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI---SGLPE------ 112 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc---ccccc------
Confidence 4457889999999996 888883 23469999999988887777654 368999999877433 22333
Q ss_pred cCceeEecCCCCCCChhhHHHHhhccc-CCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeee
Q 044247 88 LLRQCSIDGLGGVSDAGEARRAELEKK-KNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEY 166 (333)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 166 (333)
+|+.|.+... ... .+..+ ++|+.|.+..++. . .....+. .-.++|+.|.+++|
T Consensus 113 sLe~L~L~~n-~~~--------~L~~LPssLk~L~I~~~n~---~------------~~~~lp~--~LPsSLk~L~Is~c 166 (426)
T PRK15386 113 SVRSLEIKGS-ATD--------SIKNVPNGLTSLSINSYNP---E------------NQARIDN--LISPSLKTLSLTGC 166 (426)
T ss_pred ccceEEeCCC-CCc--------ccccCcchHhheecccccc---c------------ccccccc--ccCCcccEEEecCC
Confidence 3444444321 100 12222 3566776643310 0 0001111 12257888888887
Q ss_pred cCCCCccCchhhhcCCCccEEEeecC
Q 044247 167 RGRRNVVPKNWVMSLTNLRVLHLFEC 192 (333)
Q Consensus 167 ~~~~~~~~~~~~~~~~~L~~L~l~~~ 192 (333)
.... + |..+ ..+|+.|.++.+
T Consensus 167 ~~i~--L-P~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 167 SNII--L-PEKL--PESLQSITLHIE 187 (426)
T ss_pred Cccc--C-cccc--cccCcEEEeccc
Confidence 7665 5 5433 467888888764
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.95 E-value=1.9e-06 Score=82.98 Aligned_cols=160 Identities=20% Similarity=0.163 Sum_probs=95.7
Q ss_pred CcccEEeecCCCcc-cccCccccc-cccccEEecCCCCCcc-cccccccccccCceeeeEEEcCccCCCCCccccccCcc
Q 044247 12 YNLERVNVSGCSHL-RELPQGIGK-LRKLMYLDNDYTDSLR-YLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNL 88 (333)
Q Consensus 12 ~~L~~L~l~~~~~~-~~lp~~i~~-l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 88 (333)
.+|++|++++.... ...|..++. +|+|+.|.+.+-.... .+......+++|..|+++++... ...+++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-----nl~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-----NLSGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-----CcHHHhcccc
Confidence 57888998886533 345555665 8899999888753222 12233567888999999888776 3477888888
Q ss_pred CceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecC
Q 044247 89 LRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRG 168 (333)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 168 (333)
|+.|.+.+++-... .....+..+++|+.|+++......... ......+--..+|+|+.|+.++...
T Consensus 197 Lq~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~~-----------ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 197 LQVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDTK-----------IIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHHhccCCCCCch---hhHHHHhcccCCCeeeccccccccchH-----------HHHHHHHhcccCccccEEecCCcch
Confidence 88888887654321 222456678888888888764221110 1111122222357777777776554
Q ss_pred CCCccCchhhhcCCCccEEEeec
Q 044247 169 RRNVVPKNWVMSLTNLRVLHLFE 191 (333)
Q Consensus 169 ~~~~~~~~~~~~~~~L~~L~l~~ 191 (333)
....+ ...+..-++|+.+.+.+
T Consensus 263 ~~~~l-e~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 263 NEEIL-EELLNSHPNLQQIAALD 284 (699)
T ss_pred hHHHH-HHHHHhCccHhhhhhhh
Confidence 43212 22233455555555443
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=6.5e-05 Score=67.32 Aligned_cols=75 Identities=23% Similarity=0.287 Sum_probs=49.0
Q ss_pred hhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEe
Q 044247 110 ELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHL 189 (333)
Q Consensus 110 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 189 (333)
.+..+.++++|++++|. ...++ .-.++|+.|.+++|..... + |+.+ .++|++|++
T Consensus 47 r~~~~~~l~~L~Is~c~------------------L~sLP---~LP~sLtsL~Lsnc~nLts-L-P~~L--P~nLe~L~L 101 (426)
T PRK15386 47 QIEEARASGRLYIKDCD------------------IESLP---VLPNELTEITIENCNNLTT-L-PGSI--PEGLEKLTV 101 (426)
T ss_pred HHHHhcCCCEEEeCCCC------------------CcccC---CCCCCCcEEEccCCCCccc-C-Cchh--hhhhhheEc
Confidence 45557888899998883 23333 1234688898888766542 4 5444 468899999
Q ss_pred ecCCCCCCCCCCCCCccccceeccc
Q 044247 190 FECRNCEHLPPLGKLTSLEDLYIAG 214 (333)
Q Consensus 190 ~~~~~~~~l~~~~~l~~L~~L~l~~ 214 (333)
++|..+..+| ++|+.|++..
T Consensus 102 s~Cs~L~sLP-----~sLe~L~L~~ 121 (426)
T PRK15386 102 CHCPEISGLP-----ESVRSLEIKG 121 (426)
T ss_pred cCcccccccc-----cccceEEeCC
Confidence 8886666554 3566666654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=1e-06 Score=80.87 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=18.4
Q ss_pred ccccccccEEecCCCCCcccccccccccccCceeeeEEEcCc
Q 044247 32 IGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGG 73 (333)
Q Consensus 32 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 73 (333)
+..+++|..|++.+| .+..+...+..+++|++|++++|.+.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~ 131 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKIT 131 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheeccccccc
Confidence 444445555555444 33333222444455555555444443
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.4e-05 Score=47.83 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=31.3
Q ss_pred CcccEEeecCCCcccccCccccccccccEEecCCCCCccccc
Q 044247 12 YNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLP 53 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p 53 (333)
++|++|++++|. +..+|..+++|++|+.|++++| .+..++
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 478999999998 7788888999999999999998 455543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=1.3e-06 Score=73.33 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=63.1
Q ss_pred cCCCcccEEeecCCCcccccCc--cc-cccccccEEecCCCCCccc--ccccccccccCceeeeEEEcCccCCCCCcccc
Q 044247 9 CELYNLERVNVSGCSHLRELPQ--GI-GKLRKLMYLDNDYTDSLRY--LPVGIGELIRLRRVTKFVVCGGYDRACSLGSL 83 (333)
Q Consensus 9 ~~l~~L~~L~l~~~~~~~~lp~--~i-~~l~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 83 (333)
...+-++.|.+.+|. +..... .+ ..++.++.+++.+|....+ +..-+.+++.|+.|+++.|.... .+..+
T Consensus 42 ~s~ra~ellvln~~~-id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s----~I~~l 116 (418)
T KOG2982|consen 42 SSLRALELLVLNGSI-IDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS----DIKSL 116 (418)
T ss_pred ccccchhhheecCCC-CCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC----ccccC
Confidence 333444455555654 322111 12 3477888899988833222 33346788999999998887764 22222
Q ss_pred -ccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecC
Q 044247 84 -KKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDN 126 (333)
Q Consensus 84 -~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 126 (333)
.-+.+|+.+.+++.. ++. ......+..+|.+++|+++.|+
T Consensus 117 p~p~~nl~~lVLNgT~-L~w--~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGTG-LSW--TQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred cccccceEEEEEcCCC-CCh--hhhhhhhhcchhhhhhhhccch
Confidence 234566677776532 221 1223456667788888887774
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=2.5e-06 Score=78.28 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=77.0
Q ss_pred hhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccC
Q 044247 7 TLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKL 86 (333)
Q Consensus 7 ~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l 86 (333)
.++.+++|+.|++.++. +..+...+..+++|++|++++| .++.+. ++..++.|+.|++.+|.+.. +..+..+
T Consensus 90 ~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i~~-----~~~~~~l 161 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLISD-----ISGLESL 161 (414)
T ss_pred ccccccceeeeeccccc-hhhcccchhhhhcchheecccc-cccccc-chhhccchhhheeccCcchh-----ccCCccc
Confidence 47789999999999998 7666666888999999999999 666663 47888889999999988763 4444445
Q ss_pred ccCceeEecCCCCCCChhhHHHHh--hcccCCccceEEeecCC
Q 044247 87 NLLRQCSIDGLGGVSDAGEARRAE--LEKKKNLFDLELDFDNL 127 (333)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~ 127 (333)
..|+.+++........ .. +..+.+++.+.+..+.+
T Consensus 162 ~~L~~l~l~~n~i~~i------e~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDI------ENDELSELISLEELDLGGNSI 198 (414)
T ss_pred hhhhcccCCcchhhhh------hhhhhhhccchHHHhccCCch
Confidence 6666655554322111 12 35667788888877753
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=3.9e-06 Score=80.87 Aligned_cols=138 Identities=19% Similarity=0.235 Sum_probs=90.5
Q ss_pred cCCccceEEeecCCCCCchhhhcccCCcccccccccccCC-CCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecC
Q 044247 114 KKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALG-PPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFEC 192 (333)
Q Consensus 114 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 192 (333)
-.+|++|++++... ....++..++ -+|+|+.|.+.+-......+ .....+||+|..||++++
T Consensus 121 r~nL~~LdI~G~~~----------------~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL----------------FSNGWPKKIGTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGT 183 (699)
T ss_pred HHhhhhcCccccch----------------hhccHHHHHhhhCcccceEEecCceecchhH-HHHhhccCccceeecCCC
Confidence 36899999988642 3334444444 46999999999866554223 334458999999999998
Q ss_pred CCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCC
Q 044247 193 RNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPR 272 (333)
Q Consensus 193 ~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~ 272 (333)
++..+...+.+++|+.|.+.+-. ++.-.. +.. +-.+.+|+.||++.-.+...-..-...-+.-..+|.
T Consensus 184 -nI~nl~GIS~LknLq~L~mrnLe-~e~~~~--l~~--------LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe 251 (699)
T KOG3665|consen 184 -NISNLSGISRLKNLQVLSMRNLE-FESYQD--LID--------LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE 251 (699)
T ss_pred -CccCcHHHhccccHHHHhccCCC-CCchhh--HHH--------HhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence 67778778899999999988765 222110 000 447889999999875433222110101112236899
Q ss_pred cceEeccc
Q 044247 273 LSSLSIQS 280 (333)
Q Consensus 273 L~~L~l~~ 280 (333)
|+.|+.++
T Consensus 252 LrfLDcSg 259 (699)
T KOG3665|consen 252 LRFLDCSG 259 (699)
T ss_pred ccEEecCC
Confidence 99999886
No 52
>PLN03150 hypothetical protein; Provisional
Probab=97.82 E-value=3.2e-05 Score=74.51 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=18.1
Q ss_pred chhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceeccccc
Q 044247 175 KNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 175 ~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~ 216 (333)
|..+..+++|+.|+|++|...+.+|. ++.+++|+.|++++|.
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ 477 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC
Confidence 33344444444444444433333332 4444444444444444
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=6e-06 Score=69.51 Aligned_cols=209 Identities=13% Similarity=0.040 Sum_probs=113.7
Q ss_pred CCCcccEEeecCCCcc--cccCccccccccccEEecCCCCCcccccccc-cccccCceeeeEEEcCccCCCCCccccccC
Q 044247 10 ELYNLERVNVSGCSHL--RELPQGIGKLRKLMYLDNDYTDSLRYLPVGI-GELIRLRRVTKFVVCGGYDRACSLGSLKKL 86 (333)
Q Consensus 10 ~l~~L~~L~l~~~~~~--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l 86 (333)
.+++++.+++.+|... .++...+.++|.|+.|+++.|+.-..+ ..+ ....+|+.|.+.+....+ ......+..+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w--~~~~s~l~~l 145 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSW--TQSTSSLDDL 145 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCCh--hhhhhhhhcc
Confidence 3678899999999833 245555678999999999998432222 112 345688999888887776 5555566777
Q ss_pred ccCceeEecCC--CCCCChhhHHHHhhcc-cCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEE
Q 044247 87 NLLRQCSIDGL--GGVSDAGEARRAELEK-KKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHI 163 (333)
Q Consensus 87 ~~L~~L~l~~~--~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 163 (333)
++++.|++..- ..+.. .+. .... -+.++++++..|.+ . .-.........+|++..+-+
T Consensus 146 P~vtelHmS~N~~rq~n~-Dd~---c~e~~s~~v~tlh~~~c~~----~-----------~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNL-DDN---CIEDWSTEVLTLHQLPCLE----Q-----------LWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred hhhhhhhhccchhhhhcc-ccc---cccccchhhhhhhcCCcHH----H-----------HHHHHHhHHhhcccchheee
Confidence 77777655421 11100 000 0001 12445555555521 0 00011111223467777777
Q ss_pred eeecCCCCccC-chhhhcCCCccEEEeecCCCCCC---CCCCCCCccccceecccccccccccccccCCCCCCCCCcccc
Q 044247 164 HEYRGRRNVVP-KNWVMSLTNLRVLHLFECRNCEH---LPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIA 239 (333)
Q Consensus 164 ~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~---l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~ 239 (333)
..|...+ .. -.....+|.+-.|.++.+ .+++ +..+.+++.|..|.+.+++-...+..+.-..- -++.
T Consensus 207 ~e~PlK~--~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~l------lIaR 277 (418)
T KOG2982|consen 207 CEGPLKT--ESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFL------LIAR 277 (418)
T ss_pred ecCcccc--hhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEE------EEee
Confidence 6665444 20 112223566667777766 3333 44477788888888888874433322111100 1456
Q ss_pred CCCccEEeec
Q 044247 240 FPKLKRLRFW 249 (333)
Q Consensus 240 l~~L~~L~l~ 249 (333)
+++++.|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 6777777543
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.73 E-value=1.9e-07 Score=87.08 Aligned_cols=60 Identities=25% Similarity=0.242 Sum_probs=29.7
Q ss_pred cCCCCCCccEEEEeeecCCCCccCchh-hhcCCCccEEEeecCCCCCCCCCCCCCccccceecccc
Q 044247 151 ALGPPPNLKELHIHEYRGRRNVVPKNW-VMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGM 215 (333)
Q Consensus 151 ~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~ 215 (333)
++..+++|+.|+|+.|.... + |.. ...+. |..|.+++| .++.+..+.++.+|+.||+++|
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~--v-p~l~~~gc~-L~~L~lrnN-~l~tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRH--V-PQLSMVGCK-LQLLNLRNN-ALTTLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhcccccccccccchhcc--c-cccchhhhh-heeeeeccc-HHHhhhhHHhhhhhhccchhHh
Confidence 44455555555555555444 3 221 11222 555555555 3444444555555666666554
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.68 E-value=3.9e-06 Score=78.54 Aligned_cols=141 Identities=21% Similarity=0.097 Sum_probs=68.8
Q ss_pred ccccccEEecCCCCCccc--ccccccccccCceeeeEEE-cCccCCC-CCccccccCccCceeEecCCCCCCChhhHHHH
Q 044247 34 KLRKLMYLDNDYTDSLRY--LPVGIGELIRLRRVTKFVV-CGGYDRA-CSLGSLKKLNLLRQCSIDGLGGVSDAGEARRA 109 (333)
Q Consensus 34 ~l~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~-~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 109 (333)
.++.|+.|.+.+|..+.. +-.....+++|+.|++..+ ....... ........+.+|+.+++.....+.+ ..+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd--~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD--IGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc--hhHHH
Confidence 366777777776655444 2233456677777776652 1111000 0111223344555555554443333 22222
Q ss_pred hhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCc-cCchhhhcCCCccEEE
Q 044247 110 ELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNV-VPKNWVMSLTNLRVLH 188 (333)
Q Consensus 110 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~ 188 (333)
....+++|++|.+..|.- . ....+......+++|+.|++++|...... + .....++++++.|.
T Consensus 264 l~~~c~~L~~L~l~~c~~----l-----------t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l-~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSN----L-----------TDEGLVSIAERCPSLRELDLSGCHGLTDSGL-EALLKNCPNLRELK 327 (482)
T ss_pred HHhhCCCcceEccCCCCc----c-----------chhHHHHHHHhcCcccEEeeecCccchHHHH-HHHHHhCcchhhhh
Confidence 333367777777666630 0 22333344455677788887777665310 1 12223466666655
Q ss_pred eecC
Q 044247 189 LFEC 192 (333)
Q Consensus 189 l~~~ 192 (333)
+..+
T Consensus 328 ~~~~ 331 (482)
T KOG1947|consen 328 LLSL 331 (482)
T ss_pred hhhc
Confidence 5443
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.61 E-value=6.5e-06 Score=77.04 Aligned_cols=138 Identities=19% Similarity=0.093 Sum_probs=65.5
Q ss_pred ccccCceeeeEEEcCccCCCC-CccccccCccCceeEecC-CCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhh
Q 044247 58 ELIRLRRVTKFVVCGGYDRAC-SLGSLKKLNLLRQCSIDG-LGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQA 135 (333)
Q Consensus 58 ~l~~L~~L~l~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 135 (333)
.++.|+.|.+.++.... .. ........+.|+.|++.. .................+.+|+.+++.++..
T Consensus 186 ~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-------- 255 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKIT--DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL-------- 255 (482)
T ss_pred hCchhhHhhhcccccCC--hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc--------
Confidence 35666666666655442 11 123334455666666654 2222222222223444556677777766631
Q ss_pred cccCCcccccccccccCC-CCCCccEEEEeeecCCC-CccCchhhhcCCCccEEEeecCCCCCC--CCC-CCCCccccce
Q 044247 136 GRRENEEDEDERLLDALG-PPPNLKELHIHEYRGRR-NVVPKNWVMSLTNLRVLHLFECRNCEH--LPP-LGKLTSLEDL 210 (333)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~--l~~-~~~l~~L~~L 210 (333)
..+.....+. .+++|+.|.+.+|...+ ..+ ......+++|+.|++++|..+.+ +.. ..++++|+.|
T Consensus 256 --------isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l 326 (482)
T KOG1947|consen 256 --------VTDIGLSALASRCPNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLREL 326 (482)
T ss_pred --------cCchhHHHHHhhCCCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhh
Confidence 1111122222 26777777766666422 111 11222577777777777755432 111 2235555554
Q ss_pred eccc
Q 044247 211 YIAG 214 (333)
Q Consensus 211 ~l~~ 214 (333)
.+..
T Consensus 327 ~~~~ 330 (482)
T KOG1947|consen 327 KLLS 330 (482)
T ss_pred hhhh
Confidence 4443
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.54 E-value=3.2e-06 Score=79.09 Aligned_cols=90 Identities=22% Similarity=0.190 Sum_probs=65.2
Q ss_pred HhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEE
Q 044247 109 AELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLH 188 (333)
Q Consensus 109 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 188 (333)
..+..++.|++|++++|.+ ..++..-..--+|..|.+++|...+ -..+.++.+|+.|+
T Consensus 203 ~~Lr~l~~LkhLDlsyN~L------------------~~vp~l~~~gc~L~~L~lrnN~l~t----L~gie~LksL~~LD 260 (1096)
T KOG1859|consen 203 DNLRRLPKLKHLDLSYNCL------------------RHVPQLSMVGCKLQLLNLRNNALTT----LRGIENLKSLYGLD 260 (1096)
T ss_pred HHHHhcccccccccccchh------------------ccccccchhhhhheeeeecccHHHh----hhhHHhhhhhhccc
Confidence 3677889999999999843 3333322222349999999988877 45677899999999
Q ss_pred eecCCCCC--CCCCCCCCccccceecccccccccc
Q 044247 189 LFECRNCE--HLPPLGKLTSLEDLYIAGMKSVKRV 221 (333)
Q Consensus 189 l~~~~~~~--~l~~~~~l~~L~~L~l~~~~~l~~i 221 (333)
+++|...+ .+.+++.+..|+.|++.+|+ +-.-
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNP-l~c~ 294 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNP-LCCA 294 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCc-cccC
Confidence 99983322 35557778899999999998 4333
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.52 E-value=5.1e-05 Score=63.24 Aligned_cols=253 Identities=20% Similarity=0.087 Sum_probs=128.6
Q ss_pred hcCCCcccEEeecCCCcc----cccCccccccccccEEecCCCCCcc----ccc-------ccccccccCceeeeEEEcC
Q 044247 8 LCELYNLERVNVSGCSHL----RELPQGIGKLRKLMYLDNDYTDSLR----YLP-------VGIGELIRLRRVTKFVVCG 72 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~----~~lp~~i~~l~~L~~L~l~~~~~~~----~~p-------~~i~~l~~L~~L~l~~~~~ 72 (333)
+..+..+..+++++|-.. ..+...|.+-.+|+..++++- ... .++ ..+.+++.|+..++++|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 334566677777777632 234444555666666666543 111 111 2245667777777776665
Q ss_pred ccCCCCCccc----cccCccCceeEecCCCCCCChhhHH---------HHhhcccCCccceEEeecCCCCCchhhhcccC
Q 044247 73 GYDRACSLGS----LKKLNLLRQCSIDGLGGVSDAGEAR---------RAELEKKKNLFDLELDFDNLRDGDEEQAGRRE 139 (333)
Q Consensus 73 ~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~---------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 139 (333)
.. ..+.. +.+-+.|.+|.+++..-=+..+.-+ ..-...-|.|+.+....|.+..+
T Consensus 105 g~---~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng--------- 172 (388)
T COG5238 105 GS---EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG--------- 172 (388)
T ss_pred Cc---ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC---------
Confidence 42 22222 3444455555554322111111111 12233457888888888865433
Q ss_pred CcccccccccccCCCCCCccEEEEeeecCCCCcc---CchhhhcCCCccEEEeecCCCCCC----CC-CCCCCcccccee
Q 044247 140 NEEDEDERLLDALGPPPNLKELHIHEYRGRRNVV---PKNWVMSLTNLRVLHLFECRNCEH----LP-PLGKLTSLEDLY 211 (333)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~----l~-~~~~l~~L~~L~ 211 (333)
........+....+|+.+.+..|......+ .-..+..+++|+.|++.+|..... +. .+...+.|+.|.
T Consensus 173 ----s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 173 ----SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred ----cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 122223334455688888888766543101 001122688999999999843221 11 144567789999
Q ss_pred cccccccccccc-cccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccc-cccCCCcceEecccCcCcc
Q 044247 212 IAGMKSVKRVGN-EFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGE-IIIMPRLSSLSIQSCRELK 285 (333)
Q Consensus 212 l~~~~~l~~i~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~ 285 (333)
+.+|- ++.-.. .++.. ..-..+|+|..|.......-..+-..-.+++. -..+|-|..|.+.+ ++++
T Consensus 249 lnDCl-ls~~G~~~v~~~------f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~ 316 (388)
T COG5238 249 LNDCL-LSNEGVKSVLRR------FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIK 316 (388)
T ss_pred ccchh-hccccHHHHHHH------hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-Ccch
Confidence 99886 332211 11110 00235678888877764321111100001110 11678888888887 4444
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00024 Score=56.76 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=64.5
Q ss_pred CCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccC
Q 044247 181 LTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLG 260 (333)
Q Consensus 181 ~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~ 260 (333)
.-+...+++++| .+..++.+..++.|.+|.+++|. +..+...+ ...+|+|..|.+.++ ++.++.--
T Consensus 41 ~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNr-It~I~p~L-----------~~~~p~l~~L~LtnN-si~~l~dl 106 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDL-----------DTFLPNLKTLILTNN-SIQELGDL 106 (233)
T ss_pred ccccceeccccc-chhhcccCCCccccceEEecCCc-ceeeccch-----------hhhccccceEEecCc-chhhhhhc
Confidence 345667777777 45555566667788888888777 66665443 346677888888773 45444311
Q ss_pred CccccccccCCCcceEecccCcCccc--CCc-ccCCCCCcceEEEccc
Q 044247 261 TAIKGEIIIMPRLSSLSIQSCRELKA--LPD-HLLQKSTLQNLEIWGA 305 (333)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~-~~~~l~~L~~L~l~~~ 305 (333)
.. ...||+|++|.+.+++.-.. -.. .+..+|+|+.||. ..
T Consensus 107 ~p----La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF-~k 149 (233)
T KOG1644|consen 107 DP----LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDF-QK 149 (233)
T ss_pred ch----hccCCccceeeecCCchhcccCceeEEEEecCcceEeeh-hh
Confidence 11 23677888888777553321 111 2334788888887 54
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.37 E-value=0.0002 Score=42.84 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=15.7
Q ss_pred CccEEEeecCCCCCCCCC-CCCCccccceeccccc
Q 044247 183 NLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 183 ~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~ 216 (333)
+|++|++++| .++++++ ++.+++|+.|++++|+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 4455555555 3344444 5555555555555554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00036 Score=55.75 Aligned_cols=92 Identities=28% Similarity=0.352 Sum_probs=66.7
Q ss_pred ccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecC--CCCCCCCCCCCCccccceecccccccccccccccC
Q 044247 150 DALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFEC--RNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLG 227 (333)
Q Consensus 150 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 227 (333)
..|..+++|..|.+++|.... +.|..-..+++|..|.+.+| ..++++.++..||+|++|.+-+|+ ++.-...-.
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~- 133 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRL- 133 (233)
T ss_pred ccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCcee-
Confidence 456677889999999999888 63444446889999999998 344566778889999999999887 443322111
Q ss_pred CCCCCCCCccccCCCccEEeeccCc
Q 044247 228 VESDTDGSSVIAFPKLKRLRFWSMS 252 (333)
Q Consensus 228 ~~~~~~~~~~~~l~~L~~L~l~~~~ 252 (333)
..+..+|+|+.|++++..
T Consensus 134 -------yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 134 -------YVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred -------EEEEecCcceEeehhhhh
Confidence 115678999999988743
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.22 E-value=0.00023 Score=59.46 Aligned_cols=174 Identities=18% Similarity=0.114 Sum_probs=82.5
Q ss_pred ccchhcCCCcccEEeecCCCcc---cccC-------ccccccccccEEecCCCCCccccccc----ccccccCceeeeEE
Q 044247 4 LPETLCELYNLERVNVSGCSHL---RELP-------QGIGKLRKLMYLDNDYTDSLRYLPVG----IGELIRLRRVTKFV 69 (333)
Q Consensus 4 lp~~l~~l~~L~~L~l~~~~~~---~~lp-------~~i~~l~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~l~~ 69 (333)
+...|.+-++|++.++++-... .+++ +++-+||+|+..++++|..-...|+. +..-+.|.+|.+.+
T Consensus 50 l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 50 LCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred HHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeec
Confidence 3344555566666666654311 1222 23456677777777776433333322 44556677777766
Q ss_pred EcCccCCCCCcc-c---------cccCccCceeEecCCCCCCC-hhhHHHHhhcccCCccceEEeecCCCCCchhhhccc
Q 044247 70 VCGGYDRACSLG-S---------LKKLNLLRQCSIDGLGGVSD-AGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRR 138 (333)
Q Consensus 70 ~~~~~~~~~~~~-~---------l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 138 (333)
|+.....+..++ . ...-+.|+...... ..+.+ ........+..-.+|+.+.+..|.++...
T Consensus 130 nGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg------- 201 (388)
T COG5238 130 NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHENLKEVKIQQNGIRPEG------- 201 (388)
T ss_pred CCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhcCceeEEeeecCcCcch-------
Confidence 665432122111 0 11223344322221 11111 22223334444456677777666543211
Q ss_pred CCcccccccccccCCCCCCccEEEEeeecCCCCccC----chhhhcCCCccEEEeecC
Q 044247 139 ENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVP----KNWVMSLTNLRVLHLFEC 192 (333)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~ 192 (333)
..+-....+..+.+|+.|++.+|.++. .. ...++.++.|+.|.+.+|
T Consensus 202 -----v~~L~~~gl~y~~~LevLDlqDNtft~--~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 202 -----VTMLAFLGLFYSHSLEVLDLQDNTFTL--EGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred -----hHHHHHHHHHHhCcceeeeccccchhh--hhHHHHHHHhcccchhhhccccch
Confidence 122223344556677777776665544 10 112235566777777776
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=4.4e-05 Score=63.82 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=74.3
Q ss_pred CCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCC
Q 044247 155 PPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDG 234 (333)
Q Consensus 155 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 234 (333)
+.+.+.|+..+|.... ......++.|+.|.|+-| .+..+.++..|++|++|||..|. +..+.+-.+
T Consensus 18 l~~vkKLNcwg~~L~D----Isic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~-I~sldEL~Y-------- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD----ISICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNC-IESLDELEY-------- 83 (388)
T ss_pred HHHhhhhcccCCCccH----HHHHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcc-cccHHHHHH--------
Confidence 3456777777877666 344457999999999998 67788889999999999999887 666655433
Q ss_pred CccccCCCccEEeeccCccccccccCCccccccccCCCcceEe
Q 044247 235 SSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLS 277 (333)
Q Consensus 235 ~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~ 277 (333)
+.++|+|+.|.|..++....-.. .---..+..+|+|++|+
T Consensus 84 --LknlpsLr~LWL~ENPCc~~ag~-nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 --LKNLPSLRTLWLDENPCCGEAGQ-NYRRKVLRVLPNLKKLD 123 (388)
T ss_pred --HhcCchhhhHhhccCCcccccch-hHHHHHHHHcccchhcc
Confidence 67889999999887653211110 00001334678888886
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00057 Score=56.79 Aligned_cols=113 Identities=19% Similarity=0.029 Sum_probs=71.5
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCC--CCcccccccccccccCceeeeEEEcCccCCCCCcccccc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYT--DSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKK 85 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~--~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 85 (333)
...+.+|+.|++.++. +..+-. +-.|++|+.|.+++| .....++.-...+++|++|+++.|++.. ......+..
T Consensus 39 ~d~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 3456677888877776 433333 557889999999998 3333344445567999999999988764 334555566
Q ss_pred CccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeec
Q 044247 86 LNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFD 125 (333)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 125 (333)
+.+|..|.+..+.... ..+.-...+..+++|++|+-...
T Consensus 115 l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 6666666666554322 22333345556678887765544
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.00029 Score=56.23 Aligned_cols=88 Identities=17% Similarity=0.264 Sum_probs=58.4
Q ss_pred cccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcc
Q 044247 206 SLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELK 285 (333)
Q Consensus 206 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 285 (333)
.++.++.+++. +....-+. +..++.++.|.+.+|..+.+|.+..- ..-.++|+.|+|++|++++
T Consensus 102 ~IeaVDAsds~-I~~eGle~-----------L~~l~~i~~l~l~~ck~~dD~~L~~l----~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEH-----------LRDLRSIKSLSLANCKYFDDWCLERL----GGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred eEEEEecCCch-HHHHHHHH-----------HhccchhhhheeccccchhhHHHHHh----cccccchheeeccCCCeec
Confidence 46667777655 32222111 56777888888888888888774322 1146889999999888887
Q ss_pred cCC-cccCCCCCcceEEEcccChhhH
Q 044247 286 ALP-DHLLQKSTLQNLEIWGACHILQ 310 (333)
Q Consensus 286 ~l~-~~~~~l~~L~~L~l~~~c~~l~ 310 (333)
+-. ..+..+++|+.|.+ .+-+.+.
T Consensus 166 ~~GL~~L~~lknLr~L~l-~~l~~v~ 190 (221)
T KOG3864|consen 166 DGGLACLLKLKNLRRLHL-YDLPYVA 190 (221)
T ss_pred hhHHHHHHHhhhhHHHHh-cCchhhh
Confidence 533 24556888888888 7665544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=8.9e-05 Score=62.05 Aligned_cols=105 Identities=22% Similarity=0.199 Sum_probs=74.7
Q ss_pred ccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecC
Q 044247 113 KKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFEC 192 (333)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 192 (333)
.+.+.+.|++++|.+.+ ......++.|++|.++-|.+.+ + ..+..|++|+.|.|..|
T Consensus 17 dl~~vkKLNcwg~~L~D-------------------Isic~kMp~lEVLsLSvNkIss--L--~pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD-------------------ISICEKMPLLEVLSLSVNKISS--L--APLQRCTRLKELYLRKN 73 (388)
T ss_pred HHHHhhhhcccCCCccH-------------------HHHHHhcccceeEEeecccccc--c--hhHHHHHHHHHHHHHhc
Confidence 34678889999995421 2344578999999999998888 4 44678999999999988
Q ss_pred CCCCCCCC---CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEee
Q 044247 193 RNCEHLPP---LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRF 248 (333)
Q Consensus 193 ~~~~~l~~---~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l 248 (333)
.+.++.. +.++|+|+.|.|..|+=...-+.. +... .+..+|+|++|+=
T Consensus 74 -~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~n-YR~~------VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 74 -CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQN-YRRK------VLRVLPNLKKLDN 124 (388)
T ss_pred -ccccHHHHHHHhcCchhhhHhhccCCcccccchh-HHHH------HHHHcccchhccC
Confidence 4455443 778899999999988733333221 1221 2677899998863
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.37 E-value=0.00025 Score=53.14 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=32.9
Q ss_pred hcCCCcccEEeecCCCcccccCccccc-cccccEEecCCCCCcccccccccccccCceeeeEEEcCc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGK-LRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGG 73 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 73 (333)
+.+..+|...++++|. +..+|..+.. .+-++.|++..| .+..+|.+++.++.|+.|++..|...
T Consensus 49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccc
Confidence 3344444555555555 4455544433 335555555555 44555555555555555555555543
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.84 E-value=0.0037 Score=52.06 Aligned_cols=91 Identities=16% Similarity=0.066 Sum_probs=61.6
Q ss_pred hcCCCcccEEeecCC--CcccccCccccccccccEEecCCCCCccccc--ccccccccCceeeeEEEcCccCCCCCcccc
Q 044247 8 LCELYNLERVNVSGC--SHLRELPQGIGKLRKLMYLDNDYTDSLRYLP--VGIGELIRLRRVTKFVVCGGYDRACSLGSL 83 (333)
Q Consensus 8 l~~l~~L~~L~l~~~--~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 83 (333)
+..|++|+.|.++.| .....++...-.+|+|++|++++| .+..+. ..+..+.+|..|++++|.......+.-..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 456889999999999 433556655667799999999999 444321 125677788889988887664222222334
Q ss_pred ccCccCceeEecCCCC
Q 044247 84 KKLNLLRQCSIDGLGG 99 (333)
Q Consensus 84 ~~l~~L~~L~l~~~~~ 99 (333)
.-+++|++|+...+..
T Consensus 140 ~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVDG 155 (260)
T ss_pred HHhhhhccccccccCC
Confidence 5577787776665544
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.31 E-value=0.074 Score=39.82 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=13.2
Q ss_pred hhcCCCccEEEeecCCCCCCCCC--CCCCccccceeccc
Q 044247 178 VMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAG 214 (333)
Q Consensus 178 ~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~ 214 (333)
+..+++|+.+.+.++ +..++. +.++++|+.+.+.+
T Consensus 31 F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS
T ss_pred ccccccccccccccc--ccccceeeeecccccccccccc
Confidence 334445555555442 222222 44444555555543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.29 E-value=0.011 Score=29.35 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=11.1
Q ss_pred cccEEeecCCCcccccCcccc
Q 044247 13 NLERVNVSGCSHLRELPQGIG 33 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~lp~~i~ 33 (333)
+|++|++++|. +..+|..++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTT
T ss_pred CccEEECCCCc-CEeCChhhc
Confidence 35666666664 445555444
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.29 E-value=0.0012 Score=49.67 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=51.4
Q ss_pred cccccCCCCCCccEEEEeeecCCCCccCchhhh-cCCCccEEEeecCCCCCCCCC-CCCCccccceeccccc
Q 044247 147 RLLDALGPPPNLKELHIHEYRGRRNVVPKNWVM-SLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 147 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~ 216 (333)
+....+..-.+|..+++++|.... + |..+. .++.++.|++++| .+.++|. +..++.|+.|.++.|+
T Consensus 44 davy~l~~~~el~~i~ls~N~fk~--f-p~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 44 DAVYMLSKGYELTKISLSDNGFKK--F-PKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred HHHHHHhCCceEEEEecccchhhh--C-CHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc
Confidence 334445556788888999988888 8 55554 6788999999988 6677776 8888999999999888
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.20 E-value=0.025 Score=28.01 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=16.7
Q ss_pred cccEEecCCCCCcccccccccc
Q 044247 37 KLMYLDNDYTDSLRYLPVGIGE 58 (333)
Q Consensus 37 ~L~~L~l~~~~~~~~~p~~i~~ 58 (333)
+|++|++++| .++.+|..+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 5899999999 67788876654
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.86 E-value=0.13 Score=38.53 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=20.8
Q ss_pred cCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecc
Q 044247 151 ALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIA 213 (333)
Q Consensus 151 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~ 213 (333)
++..+++|+.+.+... ... +....+..+++++.+.+..+ ...++. +..+++|+.+++.
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEET
T ss_pred hccccccccccccccc-ccc--cceeeeeccccccccccccc--ccccccccccccccccccccC
Confidence 3444445555555432 222 21223334445555555432 222222 3444555555554
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=0.019 Score=46.09 Aligned_cols=88 Identities=20% Similarity=0.107 Sum_probs=59.3
Q ss_pred cccEEeecCCCcccccCccccccccccEEecCCCCCccccc-cccc-ccccCceeeeEEEcCccCCCCCccccccCccCc
Q 044247 13 NLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLP-VGIG-ELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLR 90 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 90 (333)
.++.++-+++....+--+.+.+++.++.|.+..|..+..-. +.++ -.++|+.|+++.|...+ ......+.++++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT--~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT--DGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec--hhHHHHHHHhhhhH
Confidence 34556656665334555557778888888888886655421 1122 45788999998887665 66677788888888
Q ss_pred eeEecCCCCCCC
Q 044247 91 QCSIDGLGGVSD 102 (333)
Q Consensus 91 ~L~l~~~~~~~~ 102 (333)
.|.+.++..+.+
T Consensus 180 ~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 180 RLHLYDLPYVAN 191 (221)
T ss_pred HHHhcCchhhhc
Confidence 888887766554
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.77 E-value=0.092 Score=24.14 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=6.2
Q ss_pred cccEEeecCCCccccc
Q 044247 13 NLERVNVSGCSHLREL 28 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~l 28 (333)
+|+.|++++|. +.++
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 45555555555 4433
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.94 E-value=0.27 Score=25.38 Aligned_cols=14 Identities=29% Similarity=0.828 Sum_probs=6.4
Q ss_pred CCcceEecccCcCc
Q 044247 271 PRLSSLSIQSCREL 284 (333)
Q Consensus 271 ~~L~~L~l~~c~~l 284 (333)
++|++|++++|+.+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 34444444444444
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.41 E-value=0.48 Score=24.31 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=8.9
Q ss_pred CcccEEeecCCCcccccCc
Q 044247 12 YNLERVNVSGCSHLRELPQ 30 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~~lp~ 30 (333)
++|++|++.+|. +..+|.
T Consensus 2 ~~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCCEEECCCCc-CCcCCH
Confidence 445555555554 444444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.41 E-value=0.48 Score=24.31 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=8.9
Q ss_pred CcccEEeecCCCcccccCc
Q 044247 12 YNLERVNVSGCSHLRELPQ 30 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~~lp~ 30 (333)
++|++|++.+|. +..+|.
T Consensus 2 ~~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCCEEECCCCc-CCcCCH
Confidence 445555555554 444444
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.47 E-value=0.79 Score=22.95 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=5.4
Q ss_pred CcccEEeecCCC
Q 044247 12 YNLERVNVSGCS 23 (333)
Q Consensus 12 ~~L~~L~l~~~~ 23 (333)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 455555555555
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=73.29 E-value=0.19 Score=41.61 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=65.6
Q ss_pred cc-chhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccc
Q 044247 4 LP-ETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGS 82 (333)
Q Consensus 4 lp-~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 82 (333)
+| ..+..+....+||++.+. +..+-..++.++.|..|+++.+ .+..+|.+.+....+.++.++.|.... .+.+
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~----~p~s 106 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQ----QPKS 106 (326)
T ss_pred cchhhhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhh----CCcc
Confidence 44 356777888889988887 6666666778888999999887 567788888888888888888877654 5666
Q ss_pred cccCccCceeEecC
Q 044247 83 LKKLNLLRQCSIDG 96 (333)
Q Consensus 83 l~~l~~L~~L~l~~ 96 (333)
.+..++++++....
T Consensus 107 ~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKK 120 (326)
T ss_pred ccccCCcchhhhcc
Confidence 67777777655544
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=53.89 E-value=8.8 Score=19.84 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=7.6
Q ss_pred ccEEeecCCCcccccCc
Q 044247 14 LERVNVSGCSHLRELPQ 30 (333)
Q Consensus 14 L~~L~l~~~~~~~~lp~ 30 (333)
|+.|++++|. +..+|+
T Consensus 4 L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 4 LKELNVSNNQ-LTSLPE 19 (26)
T ss_pred cceeecCCCc-cccCcc
Confidence 4455555554 444443
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=51.56 E-value=13 Score=19.23 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=5.6
Q ss_pred CcccEEeecCCC
Q 044247 12 YNLERVNVSGCS 23 (333)
Q Consensus 12 ~~L~~L~l~~~~ 23 (333)
++|++|++..|+
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 344444444444
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.80 E-value=4.6 Score=37.90 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=5.9
Q ss_pred Cccccceecccc
Q 044247 204 LTSLEDLYIAGM 215 (333)
Q Consensus 204 l~~L~~L~l~~~ 215 (333)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 344555555544
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=44.55 E-value=0.42 Score=44.67 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=17.8
Q ss_pred ccEEeecCCCcc----cccCccccccccccEEecCCC
Q 044247 14 LERVNVSGCSHL----RELPQGIGKLRKLMYLDNDYT 46 (333)
Q Consensus 14 L~~L~l~~~~~~----~~lp~~i~~l~~L~~L~l~~~ 46 (333)
+..|.+.+|... ..+-..+..++.|..|++++|
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n 125 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN 125 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC
Confidence 555666666522 123333455666666666666
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=36.08 E-value=1.8 Score=36.05 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=46.3
Q ss_pred chhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEc
Q 044247 6 ETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVC 71 (333)
Q Consensus 6 ~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 71 (333)
+.++.++.|..|+++.+. +..+|..+++...++.++...| +....|...+..+.++.++.-.+.
T Consensus 59 ~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 59 KNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred cchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhccCc
Confidence 345556677777877776 7778888888888888887776 666777777777777777765544
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.65 E-value=14 Score=34.74 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=31.0
Q ss_pred CCCCccEEEEeeecCCCCccC--chhhhcCCCccEEEeecCC-CCCC---CCCCCCCccccceeccccccc
Q 044247 154 PPPNLKELHIHEYRGRRNVVP--KNWVMSLTNLRVLHLFECR-NCEH---LPPLGKLTSLEDLYIAGMKSV 218 (333)
Q Consensus 154 ~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~---l~~~~~l~~L~~L~l~~~~~l 218 (333)
+.+.+..+.+++|.... +. .......|+|+.|+|++|. .+.. ++.+++ ..|++|.+.+|+-.
T Consensus 216 n~p~i~sl~lsnNrL~~--Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH--LDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhc--hhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence 44566666666665544 20 1111246677777777661 1111 222333 24667777776633
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=32.16 E-value=33 Score=17.75 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=5.4
Q ss_pred cccEEeecCCC
Q 044247 13 NLERVNVSGCS 23 (333)
Q Consensus 13 ~L~~L~l~~~~ 23 (333)
+|++|+|++|.
T Consensus 3 ~L~~LdL~~N~ 13 (28)
T smart00368 3 SLRELDLSNNK 13 (28)
T ss_pred ccCEEECCCCC
Confidence 44555555544
Done!