Query 044247
Match_columns 333
No_of_seqs 170 out of 1968
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 22:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 4.5E-25 1.5E-29 216.0 15.0 285 5-333 385-768 (768)
2 4fcg_A Uncharacterized protein 99.9 4.4E-23 1.5E-27 182.0 20.0 228 11-302 80-308 (328)
3 4fcg_A Uncharacterized protein 99.9 4.2E-23 1.4E-27 182.1 19.3 217 1-280 93-310 (328)
4 3rgz_A Protein brassinosteroid 99.9 6.9E-23 2.4E-27 200.5 18.1 272 3-307 358-691 (768)
5 4fmz_A Internalin; leucine ric 99.9 2.4E-22 8.2E-27 178.7 18.6 260 2-307 57-322 (347)
6 4fmz_A Internalin; leucine ric 99.9 4.1E-22 1.4E-26 177.2 18.6 260 2-307 79-344 (347)
7 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-23 5.7E-28 183.6 9.5 252 12-311 50-306 (313)
8 4eco_A Uncharacterized protein 99.9 8.4E-23 2.9E-27 195.8 15.0 266 3-307 290-598 (636)
9 2id5_A Lingo-1, leucine rich r 99.9 9.6E-22 3.3E-26 182.3 19.8 271 5-307 49-331 (477)
10 4eco_A Uncharacterized protein 99.9 1.4E-22 4.8E-27 194.2 14.3 114 4-126 239-364 (636)
11 3v47_A TOLL-like receptor 5B a 99.9 2.1E-22 7.2E-27 185.6 14.8 130 156-307 275-406 (455)
12 2id5_A Lingo-1, leucine rich r 99.9 3.5E-22 1.2E-26 185.2 16.0 270 1-307 23-307 (477)
13 4ecn_A Leucine-rich repeat pro 99.9 3.3E-22 1.1E-26 195.9 16.3 255 4-302 481-783 (876)
14 3t6q_A CD180 antigen; protein- 99.9 9.7E-22 3.3E-26 187.6 19.2 187 7-216 273-460 (606)
15 4ecn_A Leucine-rich repeat pro 99.9 1E-21 3.5E-26 192.4 19.5 268 4-308 533-839 (876)
16 1ogq_A PGIP-2, polygalacturona 99.9 4.7E-23 1.6E-27 180.7 8.1 240 3-288 67-308 (313)
17 3v47_A TOLL-like receptor 5B a 99.9 3.6E-21 1.2E-25 177.3 20.4 107 182-307 275-382 (455)
18 3o6n_A APL1; leucine-rich repe 99.9 1.8E-21 6.3E-26 175.8 16.3 264 2-307 58-350 (390)
19 3t6q_A CD180 antigen; protein- 99.9 1.5E-21 5.1E-26 186.3 15.1 264 1-308 290-559 (606)
20 3oja_B Anopheles plasmodium-re 99.9 4.5E-21 1.5E-25 182.6 17.4 266 3-307 65-356 (597)
21 1xku_A Decorin; proteoglycan, 99.9 2E-20 7E-25 165.1 19.5 252 2-308 44-305 (330)
22 1o6v_A Internalin A; bacterial 99.9 3.8E-20 1.3E-24 171.1 22.1 263 8-307 86-364 (466)
23 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-20 3.6E-25 167.1 17.2 250 1-309 45-307 (332)
24 2z80_A TOLL-like receptor 2, v 99.9 3.3E-21 1.1E-25 171.8 13.2 263 1-307 43-312 (353)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.2E-20 2.1E-24 173.6 22.6 90 2-96 65-155 (562)
26 1xku_A Decorin; proteoglycan, 99.9 3.8E-20 1.3E-24 163.4 19.5 240 13-307 32-274 (330)
27 2ft3_A Biglycan; proteoglycan, 99.9 3.4E-20 1.2E-24 163.8 19.2 250 2-307 17-275 (332)
28 1o6v_A Internalin A; bacterial 99.9 4.8E-20 1.6E-24 170.4 20.6 241 8-307 64-320 (466)
29 3vq2_A TLR4, TOLL-like recepto 99.9 8.2E-20 2.8E-24 174.2 22.6 59 152-216 281-339 (606)
30 3oja_B Anopheles plasmodium-re 99.8 1.2E-20 4E-25 179.7 15.8 246 10-307 49-335 (597)
31 3o6n_A APL1; leucine-rich repe 99.8 3E-20 1E-24 167.9 17.5 243 2-283 82-351 (390)
32 2z7x_B TOLL-like receptor 1, v 99.8 6.5E-20 2.2E-24 171.8 20.3 113 3-127 35-150 (520)
33 3zyj_A Leucine-rich repeat-con 99.8 5.9E-20 2E-24 168.5 19.4 242 14-307 45-290 (440)
34 3bz5_A Internalin-J, INLJ; leu 99.8 6.6E-20 2.2E-24 168.7 19.3 104 6-127 36-139 (457)
35 3zyi_A Leucine-rich repeat-con 99.8 7.1E-20 2.4E-24 168.6 19.2 242 14-307 56-301 (452)
36 3vq2_A TLR4, TOLL-like recepto 99.8 1.7E-20 5.9E-25 178.9 15.5 249 8-307 281-556 (606)
37 3bz5_A Internalin-J, INLJ; leu 99.8 4.5E-20 1.5E-24 169.8 17.7 184 2-216 55-244 (457)
38 2z81_A CD282 antigen, TOLL-lik 99.8 2E-20 6.7E-25 176.4 14.0 162 5-192 43-206 (549)
39 2z63_A TOLL-like receptor 4, v 99.8 7.1E-20 2.4E-24 173.3 17.5 84 8-94 72-156 (570)
40 3j0a_A TOLL-like receptor 5; m 99.8 4.2E-19 1.4E-23 175.5 23.2 118 5-128 41-161 (844)
41 2z66_A Variable lymphocyte rec 99.8 2.1E-20 7.2E-25 163.2 12.2 136 151-307 121-259 (306)
42 2z63_A TOLL-like receptor 4, v 99.8 5.5E-20 1.9E-24 174.1 15.7 252 4-307 274-529 (570)
43 2z7x_B TOLL-like receptor 1, v 99.8 5.1E-19 1.7E-23 165.7 20.1 135 148-307 340-479 (520)
44 2z81_A CD282 antigen, TOLL-lik 99.8 5E-19 1.7E-23 166.8 19.6 139 152-307 357-508 (549)
45 3o53_A Protein LRIM1, AGAP0063 99.8 5.9E-21 2E-25 167.7 5.5 247 8-312 30-278 (317)
46 3j0a_A TOLL-like receptor 5; m 99.8 3.5E-19 1.2E-23 176.0 17.4 83 11-96 23-106 (844)
47 1ziw_A TOLL-like receptor 3; i 99.8 8.8E-19 3E-23 169.3 19.1 87 5-96 66-154 (680)
48 1ziw_A TOLL-like receptor 3; i 99.8 1E-18 3.6E-23 168.8 18.4 160 2-192 17-181 (680)
49 3oja_A Leucine-rich immune mol 99.8 2.9E-20 9.9E-25 172.5 6.8 243 3-302 21-269 (487)
50 2z66_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 155.4 13.4 234 1-283 19-260 (306)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.8E-18 6.1E-23 163.6 17.9 116 1-129 43-160 (562)
52 1ozn_A Reticulon 4 receptor; N 99.8 2.2E-18 7.4E-23 148.9 15.5 178 12-216 32-212 (285)
53 2z80_A TOLL-like receptor 2, v 99.8 1.7E-18 5.9E-23 154.2 14.2 235 2-284 65-314 (353)
54 3zyj_A Leucine-rich repeat-con 99.8 3.1E-18 1.1E-22 157.1 14.8 229 2-282 56-290 (440)
55 3zyi_A Leucine-rich repeat-con 99.8 3.7E-18 1.3E-22 157.1 14.7 230 2-282 67-301 (452)
56 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-17 4.5E-22 144.0 16.1 172 15-216 14-188 (285)
57 1jl5_A Outer protein YOPM; leu 99.8 1.9E-18 6.6E-23 158.8 11.0 243 2-306 24-287 (454)
58 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-17 8.9E-22 156.2 17.9 239 1-308 52-296 (622)
59 1h6u_A Internalin H; cell adhe 99.8 1E-17 3.5E-22 146.3 13.7 191 8-251 37-227 (308)
60 3o53_A Protein LRIM1, AGAP0063 99.7 1.3E-18 4.5E-23 152.6 7.9 236 13-309 11-250 (317)
61 1wwl_A Monocyte differentiatio 99.7 1.3E-18 4.3E-23 152.4 7.7 244 8-307 39-307 (312)
62 4g8a_A TOLL-like receptor 4; l 99.7 2.2E-17 7.6E-22 157.9 17.0 117 1-127 64-185 (635)
63 2xwt_C Thyrotropin receptor; s 99.7 2.5E-17 8.6E-22 138.5 15.0 197 13-283 32-238 (239)
64 1wwl_A Monocyte differentiatio 99.7 6.9E-18 2.4E-22 147.7 10.0 226 4-282 57-307 (312)
65 2z62_A TOLL-like receptor 4, v 99.7 2.2E-17 7.6E-22 141.8 12.5 87 2-95 20-108 (276)
66 1p9a_G Platelet glycoprotein I 99.7 1E-16 3.5E-21 138.7 15.3 198 7-252 5-206 (290)
67 2ast_B S-phase kinase-associat 99.7 9.7E-19 3.3E-23 154.6 2.1 58 12-70 70-128 (336)
68 3rfs_A Internalin B, repeat mo 99.7 5.8E-17 2E-21 139.0 12.2 207 32-296 37-247 (272)
69 2o6q_A Variable lymphocyte rec 99.7 3.9E-16 1.3E-20 133.7 17.0 195 13-252 17-216 (270)
70 4ay9_X Follicle-stimulating ho 99.7 5.2E-16 1.8E-20 137.9 17.8 98 183-302 155-253 (350)
71 2o6q_A Variable lymphocyte rec 99.7 2.9E-16 1E-20 134.4 15.6 183 1-216 28-216 (270)
72 3oja_A Leucine-rich immune mol 99.7 4.3E-17 1.5E-21 151.2 10.8 224 27-309 21-250 (487)
73 1jl5_A Outer protein YOPM; leu 99.7 2.6E-16 8.8E-21 144.6 15.8 156 12-216 131-288 (454)
74 3rfs_A Internalin B, repeat mo 99.7 3.5E-17 1.2E-21 140.4 9.3 58 10-71 39-96 (272)
75 2ca6_A RAN GTPase-activating p 99.7 1.8E-18 6.1E-23 156.0 1.2 258 3-284 23-316 (386)
76 4ay9_X Follicle-stimulating ho 99.7 4.8E-16 1.6E-20 138.2 16.9 226 1-280 21-255 (350)
77 1h6u_A Internalin H; cell adhe 99.7 2E-16 6.9E-21 138.1 14.2 181 2-223 54-234 (308)
78 2xwt_C Thyrotropin receptor; s 99.7 4.2E-16 1.4E-20 131.0 15.5 205 25-308 23-238 (239)
79 2ca6_A RAN GTPase-activating p 99.7 1.4E-18 4.7E-23 156.7 -0.7 252 25-307 21-314 (386)
80 1p9a_G Platelet glycoprotein I 99.7 3.7E-16 1.3E-20 135.2 14.4 199 32-282 6-206 (290)
81 4g8a_A TOLL-like receptor 4; l 99.7 7.8E-16 2.7E-20 147.1 18.0 116 1-129 43-162 (635)
82 2z62_A TOLL-like receptor 4, v 99.7 8E-16 2.7E-20 132.1 12.8 65 25-95 19-84 (276)
83 1h6t_A Internalin B; cell adhe 99.7 3.7E-16 1.3E-20 135.3 10.4 170 8-216 42-211 (291)
84 3g06_A SSPH2 (leucine-rich rep 99.6 7.1E-15 2.4E-19 139.5 19.6 229 11-307 39-272 (622)
85 1z7x_W Ribonuclease inhibitor; 99.6 5.7E-18 1.9E-22 156.1 -1.6 141 154-307 254-409 (461)
86 1z7x_W Ribonuclease inhibitor; 99.6 5.5E-18 1.9E-22 156.2 -2.0 40 266-307 336-381 (461)
87 3ogk_B Coronatine-insensitive 99.6 5.9E-17 2E-21 154.0 3.5 265 4-311 212-527 (592)
88 4glp_A Monocyte differentiatio 99.6 4E-16 1.4E-20 136.4 8.2 223 12-282 64-305 (310)
89 2ast_B S-phase kinase-associat 99.6 5.7E-17 2E-21 143.2 2.8 191 3-251 84-282 (336)
90 3ogk_B Coronatine-insensitive 99.6 4E-17 1.4E-21 155.1 1.6 38 269-307 461-499 (592)
91 3goz_A Leucine-rich repeat-con 99.6 4.8E-17 1.7E-21 145.3 0.6 250 4-283 14-296 (362)
92 1m9s_A Internalin B; cell inva 99.6 1.9E-15 6.3E-20 143.3 11.2 174 8-221 39-212 (605)
93 3goz_A Leucine-rich repeat-con 99.6 9.7E-17 3.3E-21 143.3 1.3 262 16-307 2-295 (362)
94 4glp_A Monocyte differentiatio 99.6 4.2E-15 1.4E-19 129.8 10.8 205 10-252 89-305 (310)
95 3m19_A Variable lymphocyte rec 99.6 2.6E-14 8.8E-19 120.9 14.1 174 12-251 14-189 (251)
96 1h6t_A Internalin B; cell adhe 99.5 3E-14 1E-18 123.2 11.4 169 32-251 42-210 (291)
97 3m19_A Variable lymphocyte rec 99.5 5.7E-14 1.9E-18 118.8 13.0 162 1-216 26-190 (251)
98 2p1m_B Transport inhibitor res 99.5 1.1E-15 3.7E-20 145.3 0.7 280 4-308 176-518 (594)
99 2p1m_B Transport inhibitor res 99.5 2.7E-16 9.4E-21 149.4 -3.6 116 9-125 102-221 (594)
100 4ezg_A Putative uncharacterize 99.5 6.1E-14 2.1E-18 114.1 10.3 151 33-216 41-192 (197)
101 1m9s_A Internalin B; cell inva 99.5 1.6E-14 5.5E-19 136.8 7.4 187 13-252 22-208 (605)
102 4ezg_A Putative uncharacterize 99.5 1.8E-13 6.1E-18 111.3 12.5 152 56-251 40-191 (197)
103 1xeu_A Internalin C; cellular 99.5 2.6E-14 9E-19 121.7 5.9 167 10-216 17-183 (263)
104 3cvr_A Invasion plasmid antige 99.5 2.8E-13 9.4E-18 127.2 13.0 175 13-252 60-241 (571)
105 1dce_A Protein (RAB geranylger 99.5 2E-15 6.9E-20 142.1 -1.9 120 157-301 442-566 (567)
106 1dce_A Protein (RAB geranylger 99.4 2.2E-15 7.4E-20 141.9 -4.3 205 33-277 346-566 (567)
107 2o6s_A Variable lymphocyte rec 99.4 2.1E-12 7.1E-17 105.9 12.1 171 15-223 10-183 (208)
108 1xeu_A Internalin C; cellular 99.4 7.8E-13 2.7E-17 112.5 9.7 152 2-193 32-183 (263)
109 2o6s_A Variable lymphocyte rec 99.4 2.6E-12 9E-17 105.3 12.2 141 111-296 48-190 (208)
110 3cvr_A Invasion plasmid antige 99.4 2.9E-12 9.9E-17 120.3 12.1 170 1-223 71-248 (571)
111 3e6j_A Variable lymphocyte rec 99.4 7.8E-12 2.7E-16 104.1 12.6 148 14-216 21-170 (229)
112 2v9t_B SLIT homolog 2 protein 99.3 1.2E-11 4.1E-16 102.3 12.2 129 156-307 32-163 (220)
113 3e6j_A Variable lymphocyte rec 99.3 1.9E-11 6.4E-16 101.8 13.4 128 156-307 40-170 (229)
114 2v9t_B SLIT homolog 2 protein 99.3 1.3E-11 4.5E-16 102.1 11.4 146 15-216 14-163 (220)
115 2xot_A Amphoterin-induced prot 99.3 7.8E-12 2.7E-16 111.4 10.0 170 15-216 21-200 (361)
116 2v70_A SLIT-2, SLIT homolog 2 99.3 3.3E-11 1.1E-15 99.7 12.3 129 156-307 32-164 (220)
117 2v70_A SLIT-2, SLIT homolog 2 99.3 3.1E-11 1.1E-15 99.7 11.2 147 15-216 14-164 (220)
118 2ell_A Acidic leucine-rich nuc 99.3 1.1E-11 3.8E-16 97.9 7.7 132 154-307 22-158 (168)
119 2xot_A Amphoterin-induced prot 99.2 1.2E-11 4.1E-16 110.2 8.5 166 1-193 30-200 (361)
120 2ell_A Acidic leucine-rich nuc 99.2 3.8E-11 1.3E-15 94.8 8.0 136 11-199 23-163 (168)
121 2je0_A Acidic leucine-rich nuc 99.2 1.9E-11 6.6E-16 94.5 4.7 127 155-302 16-147 (149)
122 3sb4_A Hypothetical leucine ri 99.1 2.2E-10 7.6E-15 100.6 10.9 239 11-302 48-328 (329)
123 1a9n_A U2A', U2A'; complex (nu 99.1 5.4E-11 1.9E-15 94.7 6.0 136 151-309 14-153 (176)
124 2je0_A Acidic leucine-rich nuc 99.1 1.1E-10 3.6E-15 90.2 6.0 129 10-190 15-148 (149)
125 1a9n_A U2A', U2A'; complex (nu 99.1 1.6E-10 5.3E-15 92.0 7.0 60 8-71 15-75 (176)
126 4b8c_D Glucose-repressible alc 99.1 2.8E-11 9.7E-16 117.3 1.5 64 154-222 245-309 (727)
127 1w8a_A SLIT protein; signaling 99.0 1.4E-09 4.9E-14 87.7 10.7 105 157-282 30-137 (192)
128 1ds9_A Outer arm dynein; leuci 99.0 2E-11 6.8E-16 99.2 -0.5 115 1-126 37-151 (198)
129 4b8c_D Glucose-repressible alc 99.0 7.1E-11 2.4E-15 114.5 2.9 113 28-170 216-330 (727)
130 2wfh_A SLIT homolog 2 protein 99.0 2.8E-09 9.4E-14 86.1 11.7 105 156-282 31-137 (193)
131 2wfh_A SLIT homolog 2 protein 99.0 3.2E-09 1.1E-13 85.7 11.0 123 159-307 13-137 (193)
132 1w8a_A SLIT protein; signaling 99.0 2.5E-09 8.6E-14 86.3 10.0 124 159-307 11-137 (192)
133 4fdw_A Leucine rich hypothetic 99.0 4.7E-08 1.6E-12 88.0 19.0 237 8-305 132-379 (401)
134 1ds9_A Outer arm dynein; leuci 99.0 3.6E-11 1.2E-15 97.7 -1.9 107 8-126 14-126 (198)
135 2o6r_A Variable lymphocyte rec 98.9 1E-08 3.5E-13 81.4 12.4 105 181-306 27-134 (177)
136 2o6r_A Variable lymphocyte rec 98.9 8.5E-09 2.9E-13 81.9 11.7 107 156-283 28-136 (177)
137 3sb4_A Hypothetical leucine ri 98.9 4.8E-09 1.6E-13 92.1 9.7 221 11-278 100-328 (329)
138 4fdw_A Leucine rich hypothetic 98.9 6.5E-08 2.2E-12 87.0 16.7 216 8-280 154-379 (401)
139 2r9u_A Variable lymphocyte rec 98.7 5.7E-08 2E-12 76.9 9.2 82 156-252 33-116 (174)
140 3g39_A Variable lymphocyte rec 98.7 5.4E-08 1.9E-12 76.7 8.9 82 156-252 30-113 (170)
141 2r9u_A Variable lymphocyte rec 98.7 4.9E-08 1.7E-12 77.3 7.2 100 15-127 15-117 (174)
142 3g39_A Variable lymphocyte rec 98.6 1.1E-07 3.6E-12 75.0 7.3 101 14-127 11-114 (170)
143 3un9_A NLR family member X1; l 98.6 4.2E-09 1.4E-13 93.9 -1.3 61 11-72 71-138 (372)
144 3e4g_A ATP synthase subunit S, 98.4 2.1E-07 7.1E-12 73.0 5.4 113 4-118 53-170 (176)
145 4fs7_A Uncharacterized protein 98.4 8E-06 2.7E-10 73.2 15.9 215 30-302 156-373 (394)
146 2ifg_A High affinity nerve gro 98.4 5.2E-07 1.8E-11 79.5 7.5 88 1-96 21-112 (347)
147 2ra8_A Uncharacterized protein 98.4 9E-08 3.1E-12 84.8 1.9 166 27-216 130-318 (362)
148 4fs7_A Uncharacterized protein 98.4 1.2E-05 4E-10 72.2 15.6 57 7-67 66-124 (394)
149 2ra8_A Uncharacterized protein 98.4 1.4E-07 4.7E-12 83.6 2.9 137 150-307 166-318 (362)
150 3un9_A NLR family member X1; l 98.3 9.8E-09 3.3E-13 91.5 -5.0 38 35-73 71-114 (372)
151 3e4g_A ATP synthase subunit S, 98.3 1.3E-07 4.4E-12 74.2 1.3 89 156-257 61-155 (176)
152 2ifg_A High affinity nerve gro 98.3 3.6E-06 1.2E-10 74.1 9.8 98 161-281 13-113 (347)
153 4gt6_A Cell surface protein; l 98.1 0.00049 1.7E-08 61.5 19.7 107 178-309 261-370 (394)
154 1io0_A Tropomodulin; LRR prote 97.6 1.6E-05 5.6E-10 63.2 2.3 118 5-126 29-162 (185)
155 4gt6_A Cell surface protein; l 97.6 0.0012 4.2E-08 58.9 13.9 125 150-302 259-385 (394)
156 1io0_A Tropomodulin; LRR prote 97.5 1.5E-05 5.1E-10 63.5 0.4 99 103-216 24-134 (185)
157 3rw6_A Nuclear RNA export fact 97.2 0.00024 8.2E-09 59.7 3.9 61 10-72 168-232 (267)
158 4h09_A Hypothetical leucine ri 97.1 0.018 6.3E-07 50.8 15.5 32 13-46 92-123 (379)
159 3rw6_A Nuclear RNA export fact 97.1 0.00037 1.3E-08 58.5 3.9 60 154-216 168-231 (267)
160 4h09_A Hypothetical leucine ri 96.8 0.031 1.1E-06 49.3 14.1 105 110-249 235-341 (379)
161 3rfe_A Platelet glycoprotein I 91.8 0.17 5.9E-06 37.1 4.1 12 239-250 53-64 (130)
162 1pgv_A TMD-1, tropomodulin TMD 91.7 0.053 1.8E-06 43.0 1.3 115 8-125 37-167 (197)
163 1pgv_A TMD-1, tropomodulin TMD 91.4 0.044 1.5E-06 43.5 0.5 44 110-166 93-136 (197)
164 3rfe_A Platelet glycoprotein I 90.7 0.26 9E-06 36.1 4.2 54 16-73 12-68 (130)
165 2lz0_A Uncharacterized protein 35.1 30 0.001 23.6 3.0 15 177-191 38-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=4.5e-25 Score=215.95 Aligned_cols=285 Identities=15% Similarity=0.114 Sum_probs=134.4
Q ss_pred cchhcC--CCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccc
Q 044247 5 PETLCE--LYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGS 82 (333)
Q Consensus 5 p~~l~~--l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 82 (333)
|..+.. +++|++|++++|...+.+|..++.+++|++|++++|.....+|..++.+++|+.|++.+|... +..+..
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~ 461 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE---GEIPQE 461 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC---SCCCGG
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc---CcCCHH
Confidence 444444 556666666666644456666666666666666666333345555666666666666665544 334455
Q ss_pred cccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEE
Q 044247 83 LKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELH 162 (333)
Q Consensus 83 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 162 (333)
+..+++|+.|++....-... ....+..+++|++|++++|.+ ...++..+..+++|+.|+
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l-----------------~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRL-----------------TGEIPKWIGRLENLAILK 520 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCC-----------------CSCCCGGGGGCTTCCEEE
T ss_pred HcCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCcc-----------------CCcCChHHhcCCCCCEEE
Confidence 55566666655544221111 112345556666666666642 223334444455555555
Q ss_pred EeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCC-------------------------------------------
Q 044247 163 IHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLP------------------------------------------- 199 (333)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~------------------------------------------- 199 (333)
+++|..... + |..+..+++|+.|++++|...+.+|
T Consensus 521 L~~N~l~~~-~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 521 LSNNSFSGN-I-PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp CCSSCCEEE-C-CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred CCCCcccCc-C-CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 555544321 3 4445555555555555442221111
Q ss_pred ----------------------------CCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccC
Q 044247 200 ----------------------------PLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSM 251 (333)
Q Consensus 200 ----------------------------~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 251 (333)
.++.+++|+.|++++|.....+|.. ++.++.|+.|+++++
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~------------l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE------------IGSMPYLFILNLGHN 666 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG------------GGGCTTCCEEECCSS
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH------------HhccccCCEEeCcCC
Confidence 1223345555555555533334433 345555555555554
Q ss_pred ccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEc----------------------ccChhh
Q 044247 252 SELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIW----------------------GACHIL 309 (333)
Q Consensus 252 ~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~----------------------~~c~~l 309 (333)
. +.+.+|..+..+++|+.|++++|.....+|..+..+++|+.|++. .+|+.+
T Consensus 667 ~------l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 667 D------ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp C------CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred c------cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 3 334444455555555555555544334455555555555555550 333332
Q ss_pred H----hhcccCCCCCCccccCcCceecC
Q 044247 310 Q----ERNREETGEDWPMIRHIPDIYIP 333 (333)
Q Consensus 310 ~----~~~~~~~~~~~~~~~~i~~~~~~ 333 (333)
. ..|....+++|++++|+|+++-|
T Consensus 741 cg~~l~~C~~~~~~~~~~~~~~~~~~~~ 768 (768)
T 3rgz_A 741 CGYPLPRCDPSNADGYAHHQRSHHHHHH 768 (768)
T ss_dssp ESTTSCCCCSCC----------------
T ss_pred cCCCCcCCCCCccCCCCCCCCccccCCC
Confidence 2 24777888999999999988643
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=4.4e-23 Score=182.00 Aligned_cols=228 Identities=20% Similarity=0.171 Sum_probs=164.6
Q ss_pred CCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCc
Q 044247 11 LYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLR 90 (333)
Q Consensus 11 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 90 (333)
..++++|+++++. +..+|..++.+++|++|++++| .+..+|..++.+++|++|++++|.... .+..+..+++|+
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~----lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRA----LPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCC----CCGGGGGCTTCC
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCcccc----CcHHHhcCcCCC
Confidence 4788888888888 6788888888888888888888 455788888888888888888776542 344445555555
Q ss_pred eeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCC
Q 044247 91 QCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRR 170 (333)
Q Consensus 91 ~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 170 (333)
.| ++++|........ .. ........+..+++|+.|++++|....
T Consensus 154 ~L----------------------------~L~~n~~~~~~p~-~~-------~~~~~~~~~~~l~~L~~L~L~~n~l~~ 197 (328)
T 4fcg_A 154 EL----------------------------SIRACPELTELPE-PL-------ASTDASGEHQGLVNLQSLRLEWTGIRS 197 (328)
T ss_dssp EE----------------------------EEEEETTCCCCCS-CS-------EEEC-CCCEEESTTCCEEEEEEECCCC
T ss_pred EE----------------------------ECCCCCCccccCh-hH-------hhccchhhhccCCCCCEEECcCCCcCc
Confidence 44 4444321100000 00 000111223457888899998888776
Q ss_pred CccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeec
Q 044247 171 NVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFW 249 (333)
Q Consensus 171 ~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 249 (333)
+ |..+..+++|+.|++++|. +..+|. ++.+++|++|++++|.....++.. +..+++|++|+++
T Consensus 198 --l-p~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~------------~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 198 --L-PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPI------------FGGRAPLKRLILK 261 (328)
T ss_dssp --C-CGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCC------------TTCCCCCCEEECT
T ss_pred --c-hHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHH------------hcCCCCCCEEECC
Confidence 7 7788889999999999884 445554 778889999999998866666544 5688899999999
Q ss_pred cCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEE
Q 044247 250 SMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEI 302 (333)
Q Consensus 250 ~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 302 (333)
+|..+. .+|..+..+++|++|++++|+.++.+|..+..+++|+.+++
T Consensus 262 ~n~~~~------~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 262 DCSNLL------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TCTTCC------BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred CCCchh------hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 886543 34455668999999999999999999999999999999988
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=4.2e-23 Score=182.10 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=179.2
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCc
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
+..+|..++++++|++|++++|. +..+|..++.+++|++|++++| .+..+|..++.+++|++|++++|... +..+
T Consensus 93 l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~---~~~p 167 (328)
T 4fcg_A 93 LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPEL---TELP 167 (328)
T ss_dssp CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTC---CCCC
T ss_pred chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCc---cccC
Confidence 45789999999999999999998 6699999999999999999999 56688999999999999999998765 3334
Q ss_pred cccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccE
Q 044247 81 GSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKE 160 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 160 (333)
..+.... + . ..+..+++|++|++++|.+ ..++..+..+++|+.
T Consensus 168 ~~~~~~~------~------~-------~~~~~l~~L~~L~L~~n~l------------------~~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 168 EPLASTD------A------S-------GEHQGLVNLQSLRLEWTGI------------------RSLPASIANLQNLKS 210 (328)
T ss_dssp SCSEEEC-------------C-------CCEEESTTCCEEEEEEECC------------------CCCCGGGGGCTTCCE
T ss_pred hhHhhcc------c------h-------hhhccCCCCCEEECcCCCc------------------CcchHhhcCCCCCCE
Confidence 3332210 0 0 1356678999999999953 355667888899999
Q ss_pred EEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCcccc
Q 044247 161 LHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIA 239 (333)
Q Consensus 161 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~ 239 (333)
|++++|.... + +..+..+++|+.|++++|...+.+|. ++.+++|++|++++|...+.+|.. +..
T Consensus 211 L~L~~N~l~~--l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~------------~~~ 275 (328)
T 4fcg_A 211 LKIRNSPLSA--L-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD------------IHR 275 (328)
T ss_dssp EEEESSCCCC--C-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT------------GGG
T ss_pred EEccCCCCCc--C-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh------------hhc
Confidence 9999999887 7 77888999999999999988777776 889999999999999877777655 678
Q ss_pred CCCccEEeeccCccccccccCCccccccccCCCcceEeccc
Q 044247 240 FPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQS 280 (333)
Q Consensus 240 l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 280 (333)
+++|++|++++|+.+ +.+|+.+..+++|+.+.+..
T Consensus 276 l~~L~~L~L~~n~~~------~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNL------SRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CTTCCEEECTTCTTC------CCCCGGGGGSCTTCEEECCG
T ss_pred CCCCCEEeCCCCCch------hhccHHHhhccCceEEeCCH
Confidence 999999999998744 45667777999999998875
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=6.9e-23 Score=200.50 Aligned_cols=272 Identities=19% Similarity=0.151 Sum_probs=219.0
Q ss_pred cccchhcCCC-cccEEeecCCCcccccCccccc--cccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCC
Q 044247 3 KLPETLCELY-NLERVNVSGCSHLRELPQGIGK--LRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACS 79 (333)
Q Consensus 3 ~lp~~l~~l~-~L~~L~l~~~~~~~~lp~~i~~--l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~ 79 (333)
.+|..+..++ +|++|++++|...+.+|..+.. +++|++|++++|.....+|..++.+++|++|++++|... +..
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~---~~~ 434 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS---GTI 434 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE---SCC
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc---Ccc
Confidence 5788899988 9999999999966788887877 899999999999655578888999999999999998776 456
Q ss_pred ccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCcc
Q 044247 80 LGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLK 159 (333)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 159 (333)
+..+..+++|+.|++....-... ....+..+++|++|++++|. .....+..+..+++|+
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~-----------------l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGE----IPQELMYVKTLETLILDFND-----------------LTGEIPSGLSNCTNLN 493 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSC-----------------CCSCCCGGGGGCTTCC
T ss_pred cHHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCceEEEecCCc-----------------ccCcCCHHHhcCCCCC
Confidence 77889999999998876432211 22367788999999999996 3345567788899999
Q ss_pred EEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCC------
Q 044247 160 ELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDT------ 232 (333)
Q Consensus 160 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~------ 232 (333)
.|++++|..... + |.++..+++|+.|++++|...+.+|. ++.+++|+.|++++|.....+|..+.......
T Consensus 494 ~L~L~~N~l~~~-~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 494 WISLSNNRLTGE-I-PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp EEECCSSCCCSC-C-CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred EEEccCCccCCc-C-ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 999999988742 6 88999999999999999976666775 88999999999999985556665433211000
Q ss_pred ----------------------------------------------------CCCccccCCCccEEeeccCccccccccC
Q 044247 233 ----------------------------------------------------DGSSVIAFPKLKRLRFWSMSELEEWDLG 260 (333)
Q Consensus 233 ----------------------------------------------------~~~~~~~l~~L~~L~l~~~~~L~~~~~~ 260 (333)
....+..+++|+.|+++++. +.
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~------l~ 645 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM------LS 645 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC------CB
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc------cc
Confidence 01135567899999999964 55
Q ss_pred CccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 261 TAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
+.+|..+..+++|+.|++++|.....+|..+..+++|+.|++ ++|.
T Consensus 646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL-s~N~ 691 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL-SSNK 691 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC-CSSC
T ss_pred ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC-CCCc
Confidence 678888999999999999997777789999999999999999 8875
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.4e-22 Score=178.68 Aligned_cols=260 Identities=18% Similarity=0.173 Sum_probs=153.7
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
..+|. ++.+++|++|++++|. +..++. +..+++|++|++++| .+..++ .+..+++|++|++++|.... ..
T Consensus 57 ~~~~~-~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~~-----~~ 126 (347)
T 4fmz_A 57 ASIQG-IEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISD-----IS 126 (347)
T ss_dssp CCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCCC-----CG
T ss_pred ccchh-hhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCcccC-----ch
Confidence 34543 7778888888888887 666666 788888888888888 555654 47788888888887776553 22
Q ss_pred ccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhc--c----cCCcccccccccccCCCC
Q 044247 82 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAG--R----RENEEDEDERLLDALGPP 155 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~l~~~ 155 (333)
.+..+++|+.|++......... ..+..+++|++|++++|.+.....-... + ..++ ....+. .+..+
T Consensus 127 ~~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~-~~~~l 198 (347)
T 4fmz_A 127 PLANLTKMYSLNLGANHNLSDL-----SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN--QIEDIS-PLASL 198 (347)
T ss_dssp GGTTCTTCCEEECTTCTTCCCC-----GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTS--CCCCCG-GGGGC
T ss_pred hhccCCceeEEECCCCCCcccc-----cchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCC--cccccc-cccCC
Confidence 2666777777777654333322 1255566666666666643221100000 0 0000 001111 13444
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGS 235 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 235 (333)
++|+.++++++.... + +. +..+++|+.|++++| .+..++.+..+++|++|++++|. +..++.
T Consensus 199 ~~L~~L~l~~n~l~~--~-~~-~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------ 260 (347)
T 4fmz_A 199 TSLHYFTAYVNQITD--I-TP-VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQ-ISDINA------------ 260 (347)
T ss_dssp TTCCEEECCSSCCCC--C-GG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG------------
T ss_pred CccceeecccCCCCC--C-ch-hhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCCc-cCCChh------------
Confidence 556666665555544 3 22 555666666666666 34444446666667777776665 333321
Q ss_pred ccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 236 SVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
+..+++|++|++++| .+..++ .+..+++|++|++++|......+..+..+++|+.|++ ++|+
T Consensus 261 -~~~l~~L~~L~l~~n-~l~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~ 322 (347)
T 4fmz_A 261 -VKDLTKLKMLNVGSN-QISDIS-------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL-SQNH 322 (347)
T ss_dssp -GTTCTTCCEEECCSS-CCCCCG-------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC-CSSS
T ss_pred -HhcCCCcCEEEccCC-ccCCCh-------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc-cCCc
Confidence 456777777777775 343332 2446778888888876544444555666788888888 7776
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=4.1e-22 Score=177.16 Aligned_cols=260 Identities=13% Similarity=0.162 Sum_probs=185.3
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
..+|. +..+++|++|++++|. +..++ .+..+++|++|++++| .+..++. +..+++|++|++.+|.... ...
T Consensus 79 ~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~----~~~ 149 (347)
T 4fmz_A 79 TDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLS----DLS 149 (347)
T ss_dssp CCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCC----CCG
T ss_pred ccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcc----ccc
Confidence 45566 8889999999999987 66665 4888999999999888 5566655 7788888888888775543 344
Q ss_pred ccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhc------ccCCcccccccccccCCCC
Q 044247 82 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAG------RRENEEDEDERLLDALGPP 155 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ 155 (333)
.+..+++|+.|.+........ . .+..+++|++|++++|.+.+...-... ....+ ..... ..+..+
T Consensus 150 ~~~~l~~L~~L~l~~~~~~~~-~-----~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n--~l~~~-~~~~~~ 220 (347)
T 4fmz_A 150 PLSNMTGLNYLTVTESKVKDV-T-----PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN--QITDI-TPVANM 220 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSS--CCCCC-GGGGGC
T ss_pred chhhCCCCcEEEecCCCcCCc-h-----hhccCCCCCEEEccCCcccccccccCCCccceeecccC--CCCCC-chhhcC
Confidence 467777777777765432211 1 255667777777777765433210000 00001 11111 126678
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGS 235 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 235 (333)
++|+.|++++|.... + +. +..+++|+.|++++| .+..++.+..+++|+.|++++|. +..++.
T Consensus 221 ~~L~~L~l~~n~l~~--~-~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------ 282 (347)
T 4fmz_A 221 TRLNSLKIGNNKITD--L-SP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDISV------------ 282 (347)
T ss_dssp TTCCEEECCSSCCCC--C-GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG------------
T ss_pred CcCCEEEccCCccCC--C-cc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCChh------------
Confidence 999999999998887 5 44 788999999999999 56667778899999999999997 555531
Q ss_pred ccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 236 SVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
+..+++|++|++++|. + ....+..+..+++|++|++++|+ ++.++. +..+++|+.|++ .+|+
T Consensus 283 -~~~l~~L~~L~L~~n~-l-----~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l-~~N~ 344 (347)
T 4fmz_A 283 -LNNLSQLNSLFLNNNQ-L-----GNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADF-ANQV 344 (347)
T ss_dssp -GGGCTTCSEEECCSSC-C-----CGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESS-SCC-
T ss_pred -hcCCCCCCEEECcCCc-C-----CCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeeh-hhhc
Confidence 5789999999999974 3 22333456689999999999976 555555 667999999999 8886
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.7e-23 Score=183.56 Aligned_cols=252 Identities=13% Similarity=0.097 Sum_probs=197.0
Q ss_pred CcccEEeecCCCccc--ccCccccccccccEEecCC-CCCcccccccccccccCceeeeEEEcCccCCCCCccccccCcc
Q 044247 12 YNLERVNVSGCSHLR--ELPQGIGKLRKLMYLDNDY-TDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNL 88 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~l~~-~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 88 (333)
.++++|+++++...+ .+|..++.+++|++|++++ |.....+|..++.+++|++|++++|... +..+..+.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---GAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---EECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC---CcCCHHHhCCCC
Confidence 579999999999555 7999999999999999995 6455578888999999999999999876 346777889999
Q ss_pred CceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCC-CccEEEEeeec
Q 044247 89 LRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPP-NLKELHIHEYR 167 (333)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~ 167 (333)
|+.|++....-.. .....+..+++|++|++++|. ....++..+..++ +|+.|++++|.
T Consensus 127 L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~-----------------l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 127 LVTLDFSYNALSG----TLPPSISSLPNLVGITFDGNR-----------------ISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp CCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSC-----------------CEEECCGGGGCCCTTCCEEECCSSE
T ss_pred CCEEeCCCCccCC----cCChHHhcCCCCCeEECcCCc-----------------ccCcCCHHHhhhhhcCcEEECcCCe
Confidence 9998886532110 112367788999999999995 3345667777777 99999999987
Q ss_pred CCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEE
Q 044247 168 GRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRL 246 (333)
Q Consensus 168 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L 246 (333)
.... + |..+..++ |+.|++++|...+..+. ++.+++|+.|++++|. +...+.. +..+++|++|
T Consensus 186 l~~~-~-~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~------------~~~l~~L~~L 249 (313)
T 1ogq_A 186 LTGK-I-PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGK------------VGLSKNLNGL 249 (313)
T ss_dssp EEEE-C-CGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGG------------CCCCTTCCEE
T ss_pred eecc-C-ChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecCc------------ccccCCCCEE
Confidence 6631 4 77787776 99999999954444444 7889999999999998 4322222 4578999999
Q ss_pred eeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccChhhHh
Q 044247 247 RFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACHILQE 311 (333)
Q Consensus 247 ~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~~l~~ 311 (333)
+++++. +.+.+|..+..+++|++|++++|.....+|.. ..+++|+.+++ .+++.+..
T Consensus 250 ~Ls~N~------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l-~~N~~lc~ 306 (313)
T 1ogq_A 250 DLRNNR------IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY-ANNKCLCG 306 (313)
T ss_dssp ECCSSC------CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT-CSSSEEES
T ss_pred ECcCCc------ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHh-cCCCCccC
Confidence 999964 33446677789999999999997666677775 67999999999 88886543
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=8.4e-23 Score=195.75 Aligned_cols=266 Identities=12% Similarity=0.145 Sum_probs=152.8
Q ss_pred cccchhcCC------CcccEEeecCCCcccccCc--cccccccccEEecCCCCCcccccccccccccCceeeeEEEcCcc
Q 044247 3 KLPETLCEL------YNLERVNVSGCSHLRELPQ--GIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGY 74 (333)
Q Consensus 3 ~lp~~l~~l------~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~ 74 (333)
.+|..++.+ ++|++|++++|. +..+|. .++.+++|++|++++|.....+| .++.+++|++|++++|....
T Consensus 290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~ 367 (636)
T 4eco_A 290 QLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE 367 (636)
T ss_dssp HHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE
T ss_pred cchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc
Confidence 367777766 888888888887 558887 78888888888888884433777 77888888888888776653
Q ss_pred CCCCCccccccCcc-CceeEecCCC--CCCChhhHHHHhhcc--cCCccceEEeecCCCCCchhhhcccCCccccccccc
Q 044247 75 DRACSLGSLKKLNL-LRQCSIDGLG--GVSDAGEARRAELEK--KKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLL 149 (333)
Q Consensus 75 ~~~~~~~~l~~l~~-L~~L~l~~~~--~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (333)
.+..+..+++ |+.|++.... .++. .+.. +++|++|++++|.+.+ ..+
T Consensus 368 ----lp~~l~~l~~~L~~L~Ls~N~l~~lp~-------~~~~~~l~~L~~L~Ls~N~l~~-----------------~~p 419 (636)
T 4eco_A 368 ----IPANFCGFTEQVENLSFAHNKLKYIPN-------IFDAKSVSVMSAIDFSYNEIGS-----------------VDG 419 (636)
T ss_dssp ----CCTTSEEECTTCCEEECCSSCCSSCCS-------CCCTTCSSCEEEEECCSSCTTT-----------------TTT
T ss_pred ----ccHhhhhhcccCcEEEccCCcCcccch-------hhhhcccCccCEEECcCCcCCC-----------------cch
Confidence 5556777777 8877775432 2222 2333 2367777877775432 122
Q ss_pred ccCC-------CCCCccEEEEeeecCCCCccCchh-hhcCCCccEEEeecCCCCCCCCC--CCC-------Cccccceec
Q 044247 150 DALG-------PPPNLKELHIHEYRGRRNVVPKNW-VMSLTNLRVLHLFECRNCEHLPP--LGK-------LTSLEDLYI 212 (333)
Q Consensus 150 ~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~--~~~-------l~~L~~L~l 212 (333)
..+. .+++|+.|++++|.... + |.. +..+++|+.|++++|. +..+|. +.. +++|+.|++
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--l-p~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISK--F-PKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCS--C-CTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEEC
T ss_pred hhhcccccccccCCCCCEEECcCCccCc--C-CHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEEC
Confidence 2222 34455555555555544 4 332 2335555555555552 223332 111 115555555
Q ss_pred cccccccccccccc--CCCCCCC-----------CCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecc
Q 044247 213 AGMKSVKRVGNEFL--GVESDTD-----------GSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQ 279 (333)
Q Consensus 213 ~~~~~l~~i~~~~~--~~~~~~~-----------~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~ 279 (333)
++|. ++.+|..+. .....+. ...+..+++|++|+++++..+..-.+.+.+|..+..+++|++|+++
T Consensus 496 s~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 496 RFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp CSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred cCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 5554 334443321 0000000 0013455566666665443222223345566677778888888888
Q ss_pred cCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 280 SCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 280 ~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
+|.. +.+|..+. ++|+.|++ ++|+
T Consensus 575 ~N~l-~~ip~~~~--~~L~~L~L-s~N~ 598 (636)
T 4eco_A 575 SNDI-RKVNEKIT--PNISVLDI-KDNP 598 (636)
T ss_dssp SSCC-CBCCSCCC--TTCCEEEC-CSCT
T ss_pred CCcC-CccCHhHh--CcCCEEEC-cCCC
Confidence 7554 77776544 78888888 7775
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=9.6e-22 Score=182.31 Aligned_cols=271 Identities=15% Similarity=0.098 Sum_probs=165.3
Q ss_pred cchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCccccccc-ccccccCceeeeEEEcCccCCCCCcccc
Q 044247 5 PETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFVVCGGYDRACSLGSL 83 (333)
Q Consensus 5 p~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l 83 (333)
|..+.++++|++|++++|......|..+.++++|++|++++| .+..+|.. ++.+++|++|++++|.... ..+..+
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~---~~~~~~ 124 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVI---LLDYMF 124 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCE---ECTTTT
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCcccc---CChhHc
Confidence 457888888888888888744455777888888888888887 55666543 6778888888887776552 233445
Q ss_pred ccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhc----c----cCCcccccccccccCCCC
Q 044247 84 KKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAG----R----RENEEDEDERLLDALGPP 155 (333)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~l~~~ 155 (333)
..+++|+.|++....- .. .....+..+++|++|++++|.+......... + ..++. ........+..+
T Consensus 125 ~~l~~L~~L~l~~n~l-~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l 199 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDL-VY---ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRL 199 (477)
T ss_dssp TTCTTCCEEEECCTTC-CE---ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSC
T ss_pred cccccCCEEECCCCcc-ce---eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccC
Confidence 6667777766654211 10 0012345566667777766654321100000 0 00000 111222345556
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTD 233 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 233 (333)
++|+.|++++|..... + +.......+|+.|++++| .++.++. ++.+++|+.|++++|. +..++...
T Consensus 200 ~~L~~L~l~~~~~~~~-~-~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-------- 267 (477)
T 2id5_A 200 YRLKVLEISHWPYLDT-M-TPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-------- 267 (477)
T ss_dssp TTCCEEEEECCTTCCE-E-CTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS--------
T ss_pred cccceeeCCCCccccc-c-CcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhh--------
Confidence 6666666666554431 3 333333446777777776 4445553 6677788888888776 55554332
Q ss_pred CCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCc-ccCCCCCcceEEEcccCh
Q 044247 234 GSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD-HLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~c~ 307 (333)
+..+++|++|+++++ .+..+ .+..+..+++|++|++++| .++.++. .+..+++|+.|++ .+++
T Consensus 268 ---~~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l-~~N~ 331 (477)
T 2id5_A 268 ---LHELLRLQEIQLVGG-QLAVV-----EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLIL-DSNP 331 (477)
T ss_dssp ---CTTCTTCCEEECCSS-CCSEE-----CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEEC-CSSC
T ss_pred ---ccccccCCEEECCCC-ccceE-----CHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEc-cCCC
Confidence 457788888888875 33322 3445668899999999985 5666665 4577899999999 7665
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.4e-22 Score=194.18 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=86.6
Q ss_pred ccchhc--CCCcccEEeecCCCcccccCccccccccccEEecCCCCCcc--ccccccccc------ccCceeeeEEEcCc
Q 044247 4 LPETLC--ELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLR--YLPVGIGEL------IRLRRVTKFVVCGG 73 (333)
Q Consensus 4 lp~~l~--~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l------~~L~~L~l~~~~~~ 73 (333)
+|..++ ++++|++|++++|...+.+|..++++++|++|++++|..+. .+|..++.+ ++|++|++.+|...
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 899999 99999999999999778999999999999999999995244 588877776 89999999888765
Q ss_pred cCCCCCcc--ccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecC
Q 044247 74 YDRACSLG--SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDN 126 (333)
Q Consensus 74 ~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 126 (333)
. .+. .+.++++|+.|++....-... +. .+..+++|++|++++|.
T Consensus 319 ~----ip~~~~l~~l~~L~~L~L~~N~l~g~----ip-~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 319 T----FPVETSLQKMKKLGMLECLYNQLEGK----LP-AFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp S----CCCHHHHTTCTTCCEEECCSCCCEEE----CC-CCEEEEEESEEECCSSE
T ss_pred c----cCchhhhccCCCCCEEeCcCCcCccc----hh-hhCCCCCCCEEECCCCc
Confidence 3 555 678888888887765321101 11 34555667777776663
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.1e-22 Score=185.56 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=98.2
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCC-CCCCCccccceecccccccccccccccCCCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLP-PLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDG 234 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 234 (333)
++|+.|++++|.... ..+..+..+++|+.|++++|...+..+ .++.+++|++|++++|. ++.++...
T Consensus 275 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--------- 342 (455)
T 3v47_A 275 SGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRM--------- 342 (455)
T ss_dssp SCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGG---------
T ss_pred cCceEEEecCccccc--cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhH---------
Confidence 578899998887766 436678889999999999985433334 37889999999999997 55554332
Q ss_pred CccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCc-ccCCCCCcceEEEcccCh
Q 044247 235 SSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD-HLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 235 ~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~c~ 307 (333)
+..+++|++|+++++. +.. ..|..+..+++|++|++++| .++.+|. .+..+++|+.|++ ++++
T Consensus 343 --~~~l~~L~~L~Ls~N~-l~~-----~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l-~~N~ 406 (455)
T 3v47_A 343 --FENLDKLEVLDLSYNH-IRA-----LGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWL-HTNP 406 (455)
T ss_dssp --GTTCTTCCEEECCSSC-CCE-----ECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC-CSSC
T ss_pred --hcCcccCCEEECCCCc-ccc-----cChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEc-cCCC
Confidence 5688999999999963 332 23455668999999999985 5666665 4577999999999 7654
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=185.24 Aligned_cols=270 Identities=15% Similarity=0.079 Sum_probs=186.0
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCccc-ccccccccccCceeeeEEEcCccCCCCC
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRY-LPVGIGELIRLRRVTKFVVCGGYDRACS 79 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~L~l~~~~~~~~~~~~ 79 (333)
++.+|..+. +++++|++++|......+..+..+++|++|++++| .+.. .|..++.+++|++|++.+|.... ..
T Consensus 23 l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~ 96 (477)
T 2id5_A 23 FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKL---IP 96 (477)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCS---CC
T ss_pred cCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCc---cC
Confidence 356777664 68999999999933444678999999999999999 4454 47779999999999999987653 23
Q ss_pred ccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCcc
Q 044247 80 LGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLK 159 (333)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 159 (333)
...+..+++|+.|++....- .. .....+..+++|++|++++|.+ ....+..+..+++|+
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i-~~---~~~~~~~~l~~L~~L~l~~n~l-----------------~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKI-VI---LLDYMFQDLYNLKSLEVGDNDL-----------------VYISHRAFSGLNSLE 155 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCC-CE---ECTTTTTTCTTCCEEEECCTTC-----------------CEECTTSSTTCTTCC
T ss_pred cccccCCCCCCEEECCCCcc-cc---CChhHccccccCCEEECCCCcc-----------------ceeChhhccCCCCCC
Confidence 33467889999998875322 11 1113577889999999999953 233345778889999
Q ss_pred EEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCC-----
Q 044247 160 ELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDT----- 232 (333)
Q Consensus 160 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~----- 232 (333)
.|++++|.... +++..+..+++|+.|++++|. +..++. +..+++|+.|++++|..+..++...+.....+
T Consensus 156 ~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 156 QLTLEKCNLTS--IPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp EEEEESCCCSS--CCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred EEECCCCcCcc--cChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 99999988777 634567789999999999884 333333 77788888888888776666554432211000
Q ss_pred -----CCC--ccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEccc
Q 044247 233 -----DGS--SVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGA 305 (333)
Q Consensus 233 -----~~~--~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~ 305 (333)
... .+..+++|++|+++++. +..+. +..+..+++|++|++++|......+..+..+++|+.|++ ++
T Consensus 233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-~~ 305 (477)
T 2id5_A 233 HCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIE-----GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV-SG 305 (477)
T ss_dssp SSCCCSCCHHHHTTCTTCCEEECCSSC-CCEEC-----TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC-CS
T ss_pred CCcccccCHHHhcCccccCeeECCCCc-CCccC-----hhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC-CC
Confidence 000 13445566666666542 22221 233456788888888876544444666777888888888 77
Q ss_pred Ch
Q 044247 306 CH 307 (333)
Q Consensus 306 c~ 307 (333)
|.
T Consensus 306 N~ 307 (477)
T 2id5_A 306 NQ 307 (477)
T ss_dssp SC
T ss_pred Cc
Confidence 63
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=3.3e-22 Score=195.93 Aligned_cols=255 Identities=14% Similarity=0.177 Sum_probs=154.2
Q ss_pred ccchhc--CCCcccEEeecCCCcccccCccccccccccEEecCCCCCcc--cccccccccc-------cCceeeeEEEcC
Q 044247 4 LPETLC--ELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLR--YLPVGIGELI-------RLRRVTKFVVCG 72 (333)
Q Consensus 4 lp~~l~--~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~-------~L~~L~l~~~~~ 72 (333)
+|..++ ++++|++|++++|...+.+|..++++++|++|++++|..+. .+|..++.++ +|++|++++|..
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 899988 99999999999998788999999999999999999995355 4887777766 999999998877
Q ss_pred ccCCCCCcc--ccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccc
Q 044247 73 GYDRACSLG--SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLD 150 (333)
Q Consensus 73 ~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (333)
.. .+. .+.++++|+.|++....- ... . .+..+++|+.|++++|.+. .++.
T Consensus 561 ~~----ip~~~~l~~L~~L~~L~Ls~N~l-~~l----p-~~~~L~~L~~L~Ls~N~l~------------------~lp~ 612 (876)
T 4ecn_A 561 EE----FPASASLQKMVKLGLLDCVHNKV-RHL----E-AFGTNVKLTDLKLDYNQIE------------------EIPE 612 (876)
T ss_dssp CB----CCCHHHHTTCTTCCEEECTTSCC-CBC----C-CCCTTSEESEEECCSSCCS------------------CCCT
T ss_pred Cc----cCChhhhhcCCCCCEEECCCCCc-ccc----h-hhcCCCcceEEECcCCccc------------------cchH
Confidence 53 555 688888999988865332 111 1 4667788888888888532 3444
Q ss_pred cCCCCCC-ccEEEEeeecCCCCccCchhhhcCC--CccEEEeecCCC----------------------------CCCCC
Q 044247 151 ALGPPPN-LKELHIHEYRGRRNVVPKNWVMSLT--NLRVLHLFECRN----------------------------CEHLP 199 (333)
Q Consensus 151 ~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~----------------------------~~~l~ 199 (333)
.+..+++ |+.|++++|.... + |..+..++ +|+.|++++|.. +..+|
T Consensus 613 ~l~~l~~~L~~L~Ls~N~L~~--l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp 689 (876)
T 4ecn_A 613 DFCAFTDQVEGLGFSHNKLKY--I-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689 (876)
T ss_dssp TSCEECTTCCEEECCSSCCCS--C-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC
T ss_pred HHhhccccCCEEECcCCCCCc--C-chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC
Confidence 4555555 6666666555444 4 44333222 244444444432 22333
Q ss_pred C--CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccc--cCCCcce
Q 044247 200 P--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEII--IMPRLSS 275 (333)
Q Consensus 200 ~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~--~~~~L~~ 275 (333)
. +..+++|+.|++++|. +..+|...+.... +....+++|+.|++++| ++.. +|..+. .+++|+.
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~----~~l~nl~~L~~L~Ls~N-~L~~------lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNL-MTSIPENSLKPKD----GNYKNTYLLTTIDLRFN-KLTS------LSDDFRATTLPYLSN 757 (876)
T ss_dssp HHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTT----SCCTTGGGCCEEECCSS-CCCC------CCGGGSTTTCTTCCE
T ss_pred HHHHccCCCCCEEECCCCc-CCccChHHhcccc----ccccccCCccEEECCCC-CCcc------chHHhhhccCCCcCE
Confidence 3 2245666666666665 4455543332100 00112236666666554 2221 223332 4455555
Q ss_pred EecccCcCcccCCcccCCCCCcceEEE
Q 044247 276 LSIQSCRELKALPDHLLQKSTLQNLEI 302 (333)
Q Consensus 276 L~l~~c~~l~~l~~~~~~l~~L~~L~l 302 (333)
|++++| .++.+|..+..+++|+.|++
T Consensus 758 L~Ls~N-~L~~lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 758 MDVSYN-CFSSFPTQPLNSSQLKAFGI 783 (876)
T ss_dssp EECCSS-CCSSCCCGGGGCTTCCEEEC
T ss_pred EEeCCC-CCCccchhhhcCCCCCEEEC
Confidence 555543 23334444444555555555
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=9.7e-22 Score=187.56 Aligned_cols=187 Identities=18% Similarity=0.170 Sum_probs=112.5
Q ss_pred hhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccC
Q 044247 7 TLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKL 86 (333)
Q Consensus 7 ~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l 86 (333)
.++.+++|++|++++|. +..+|..++.+++|++|++++|......|..++.+++|++|++.+|.... ......+..+
T Consensus 273 ~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l 349 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL--ELGTGCLENL 349 (606)
T ss_dssp TTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC--BCCSSTTTTC
T ss_pred HhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc--ccchhhhhcc
Confidence 37778888888888887 66788778888888888888874333345567788888888887776542 2223346677
Q ss_pred ccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeee
Q 044247 87 NLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEY 166 (333)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 166 (333)
++|+.|++....- .... .....+..+++|++|++++|.+ ....+..+..+++|+.|++++|
T Consensus 350 ~~L~~L~l~~n~l-~~~~-~~~~~~~~l~~L~~L~l~~n~l-----------------~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 350 ENLRELDLSHDDI-ETSD-CCNLQLRNLSHLQSLNLSYNEP-----------------LSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp TTCCEEECCSSCC-CEEE-ESTTTTTTCTTCCEEECCSCSC-----------------EEECTTTTTTCTTCSEEECTTC
T ss_pred CcCCEEECCCCcc-cccc-CcchhcccCCCCCEEECCCCcC-----------------CcCCHHHhcCCccCCeEECCCC
Confidence 7777777654321 1100 0012456677788888877742 2233445556666666666665
Q ss_pred cCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceeccccc
Q 044247 167 RGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 167 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~ 216 (333)
..... .++..+..+++|+.|++++|......+. ++.+++|++|++++|.
T Consensus 411 ~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 411 RLKVK-DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CEECC-TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred cCCCc-ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 54431 1022355566666666666633222232 5556666666666665
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1e-21 Score=192.42 Aligned_cols=268 Identities=13% Similarity=0.110 Sum_probs=151.8
Q ss_pred ccchhcCCC-------cccEEeecCCCcccccCc--cccccccccEEecCCCCCcccccccccccccCceeeeEEEcCcc
Q 044247 4 LPETLCELY-------NLERVNVSGCSHLRELPQ--GIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGY 74 (333)
Q Consensus 4 lp~~l~~l~-------~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~ 74 (333)
+|..++.++ +|++|++++|. +..+|. .++.+++|+.|++++| .+..+| .++.+++|+.|++++|....
T Consensus 533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~Ls~N~l~~ 609 (876)
T 4ecn_A 533 LKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKLDYNQIEE 609 (876)
T ss_dssp HHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEECCSSCCSC
T ss_pred chHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEECcCCcccc
Confidence 666666665 88888888888 558888 7888888888888888 455777 68888888888888877653
Q ss_pred CCCCCccccccCcc-CceeEecCCC--CCCChhhHHHHhhccc--CCccceEEeecCCCCCchhhhcccCCccccccccc
Q 044247 75 DRACSLGSLKKLNL-LRQCSIDGLG--GVSDAGEARRAELEKK--KNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLL 149 (333)
Q Consensus 75 ~~~~~~~~l~~l~~-L~~L~l~~~~--~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (333)
.+..+..+++ |+.|++.... .++. .+..+ ++|+.|++++|.+.+.. ..++
T Consensus 610 ----lp~~l~~l~~~L~~L~Ls~N~L~~lp~-------~~~~~~~~~L~~L~Ls~N~l~g~i--------------p~l~ 664 (876)
T 4ecn_A 610 ----IPEDFCAFTDQVEGLGFSHNKLKYIPN-------IFNAKSVYVMGSVDFSYNKIGSEG--------------RNIS 664 (876)
T ss_dssp ----CCTTSCEECTTCCEEECCSSCCCSCCS-------CCCTTCSSCEEEEECCSSCTTTTS--------------SSCS
T ss_pred ----chHHHhhccccCCEEECcCCCCCcCch-------hhhccccCCCCEEECcCCcCCCcc--------------ccch
Confidence 5556777777 8887775432 2221 23333 34788888877643211 1111
Q ss_pred ccCC--CCCCccEEEEeeecCCCCccCchhh-hcCCCccEEEeecCCCCCCCCC--CC-------CCccccceecccccc
Q 044247 150 DALG--PPPNLKELHIHEYRGRRNVVPKNWV-MSLTNLRVLHLFECRNCEHLPP--LG-------KLTSLEDLYIAGMKS 217 (333)
Q Consensus 150 ~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~l~~--~~-------~l~~L~~L~l~~~~~ 217 (333)
..+. ..++|+.|++++|.... + |..+ ..+++|+.|++++| .+..+|. +. ++++|+.|++++|.
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~~--l-p~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~- 739 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQK--F-PTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK- 739 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCCS--C-CHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-
T ss_pred hhhccccCCCcCEEEccCCcCCc--c-CHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-
Confidence 1111 22355555555555444 4 3332 24555555555554 2223332 11 11245555555544
Q ss_pred ccccccccc--CCCCCCC-----------CCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCc
Q 044247 218 VKRVGNEFL--GVESDTD-----------GSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCREL 284 (333)
Q Consensus 218 l~~i~~~~~--~~~~~~~-----------~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 284 (333)
+..+|..+. .....+. ...+..+++|+.|++++++.+..-.+.+.+|..+..+++|+.|++++|..
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred CccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 333433211 0000000 00134556666666655443333334455666677778888888877654
Q ss_pred ccCCcccCCCCCcceEEEcccChh
Q 044247 285 KALPDHLLQKSTLQNLEIWGACHI 308 (333)
Q Consensus 285 ~~l~~~~~~l~~L~~L~l~~~c~~ 308 (333)
+.+|..+. ++|+.|++ ++|+.
T Consensus 819 ~~Ip~~l~--~~L~~LdL-s~N~l 839 (876)
T 4ecn_A 819 RKVDEKLT--PQLYILDI-ADNPN 839 (876)
T ss_dssp CBCCSCCC--SSSCEEEC-CSCTT
T ss_pred CccCHhhc--CCCCEEEC-CCCCC
Confidence 77776543 57888888 77753
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=4.7e-23 Score=180.71 Aligned_cols=240 Identities=15% Similarity=0.097 Sum_probs=188.6
Q ss_pred cccchhcCCCcccEEeecC-CCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 3 KLPETLCELYNLERVNVSG-CSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 3 ~lp~~l~~l~~L~~L~l~~-~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
.+|..++++++|++|++++ +...+.+|..++.+++|++|++++|.....+|..++.+++|++|++++|... +..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~---~~~p~ 143 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---GTLPP 143 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE---SCCCG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC---CcCCh
Confidence 5899999999999999995 7755789999999999999999999554478888999999999999998876 44677
Q ss_pred ccccCccCceeEecCCCCCCChhhHHHHhhcccC-CccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccE
Q 044247 82 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKK-NLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKE 160 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 160 (333)
.+..+++|+.|++....-. ......+..++ +|++|++++|. .....+..+..++ |+.
T Consensus 144 ~~~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~~L~~L~L~~N~-----------------l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRIS----GAIPDSYGSFSKLFTSMTISRNR-----------------LTGKIPPTFANLN-LAF 201 (313)
T ss_dssp GGGGCTTCCEEECCSSCCE----EECCGGGGCCCTTCCEEECCSSE-----------------EEEECCGGGGGCC-CSE
T ss_pred HHhcCCCCCeEECcCCccc----CcCCHHHhhhhhcCcEEECcCCe-----------------eeccCChHHhCCc-ccE
Confidence 8889999999988754321 11223566777 99999999995 3335556666665 999
Q ss_pred EEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccC
Q 044247 161 LHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAF 240 (333)
Q Consensus 161 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l 240 (333)
|++++|..... . +..+..+++|+.|++++|......+.++.+++|++|++++|.....+|.. +..+
T Consensus 202 L~Ls~N~l~~~-~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~------------l~~l 267 (313)
T 1ogq_A 202 VDLSRNMLEGD-A-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG------------LTQL 267 (313)
T ss_dssp EECCSSEEEEC-C-GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG------------GGGC
T ss_pred EECcCCcccCc-C-CHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH------------HhcC
Confidence 99999877651 3 77788899999999999965555666888999999999999843355544 6789
Q ss_pred CCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCC
Q 044247 241 PKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALP 288 (333)
Q Consensus 241 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 288 (333)
++|++|+++++. +. +.+|.. ..+++|+.+++.+++.+...|
T Consensus 268 ~~L~~L~Ls~N~-l~-----~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 268 KFLHSLNVSFNN-LC-----GEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTCCEEECCSSE-EE-----EECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cCCCEEECcCCc-cc-----ccCCCC-ccccccChHHhcCCCCccCCC
Confidence 999999999964 32 233333 478999999999988776544
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=3.6e-21 Score=177.33 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=74.4
Q ss_pred CCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccC
Q 044247 182 TNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLG 260 (333)
Q Consensus 182 ~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~ 260 (333)
++|+.|++++|...+..+. ++.+++|++|++++|. +..++... +..+++|++|+++++ .+..
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~---- 337 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNA-----------FWGLTHLLKLNLSQN-FLGS---- 337 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT-----------TTTCTTCCEEECCSS-CCCE----
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhH-----------hcCcccCCEEECCCC-ccCC----
Confidence 4667777776643333333 6778888888888887 44443221 567888999999886 3322
Q ss_pred CccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 261 TAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
..+..+..+++|++|++++|......|..+..+++|+.|++ ++|.
T Consensus 338 -~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-~~N~ 382 (455)
T 3v47_A 338 -IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL-DTNQ 382 (455)
T ss_dssp -ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC-CSSC
T ss_pred -cChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC-CCCc
Confidence 23345667899999999997554445677888999999999 8875
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=1.8e-21 Score=175.79 Aligned_cols=264 Identities=18% Similarity=0.172 Sum_probs=163.2
Q ss_pred Ccccch-hcCCCcccEEeecCCCccccc-CccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCC
Q 044247 2 EKLPET-LCELYNLERVNVSGCSHLREL-PQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRAC 78 (333)
Q Consensus 2 ~~lp~~-l~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~ 78 (333)
..+|.. +..+++|++|++++|. +..+ +..+..+++|++|++++|. +..+ |..++.+++|++|++.+|....
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~---- 131 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSS---- 131 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC----
T ss_pred hhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCccCc----
Confidence 456655 5778888888888887 4444 4467888888888888884 4444 4457788888888888776653
Q ss_pred Cccc-cccCccCceeEecCCC--CCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhc-cc-----CCccc------
Q 044247 79 SLGS-LKKLNLLRQCSIDGLG--GVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAG-RR-----ENEED------ 143 (333)
Q Consensus 79 ~~~~-l~~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~-----~~~~~------ 143 (333)
.+.. +..+++|+.|++.... .+.. ..+..+++|++|++++|.+......... +. .+...
T Consensus 132 l~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 205 (390)
T 3o6n_A 132 LPRGIFHNTPKLTTLSMSNNNLERIED------DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 205 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCT------TTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCS
T ss_pred CCHHHhcCCCCCcEEECCCCccCccCh------hhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCC
Confidence 3333 4667778877775432 2211 2456677788888877765432111000 00 00000
Q ss_pred ----------ccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceec
Q 044247 144 ----------EDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYI 212 (333)
Q Consensus 144 ----------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l 212 (333)
....++. ...++|+.|++++|.... ..++..+++|+.|++++|...+..+. ++.+++|+.|++
T Consensus 206 ~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 206 AVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp SCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred cceEEECCCCeeeeccc--cccccccEEECCCCCCcc----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 0000000 112466777777766655 44566778888888887743332232 667778888888
Q ss_pred ccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccC
Q 044247 213 AGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLL 292 (333)
Q Consensus 213 ~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 292 (333)
++|. ++.++.. ...+++|++|+++++ .+.. +|..+..+++|++|++++|+ ++.++ +.
T Consensus 280 ~~n~-l~~~~~~------------~~~l~~L~~L~L~~n-~l~~------~~~~~~~l~~L~~L~L~~N~-i~~~~--~~ 336 (390)
T 3o6n_A 280 SNNR-LVALNLY------------GQPIPTLKVLDLSHN-HLLH------VERNQPQFDRLENLYLDHNS-IVTLK--LS 336 (390)
T ss_dssp CSSC-CCEEECS------------SSCCTTCCEEECCSS-CCCC------CGGGHHHHTTCSEEECCSSC-CCCCC--CC
T ss_pred CCCc-CcccCcc------------cCCCCCCCEEECCCC-ccee------cCccccccCcCCEEECCCCc-cceeC--ch
Confidence 8776 5555432 346788888888886 3433 33445578889999998854 55554 55
Q ss_pred CCCCcceEEEcccCh
Q 044247 293 QKSTLQNLEIWGACH 307 (333)
Q Consensus 293 ~l~~L~~L~l~~~c~ 307 (333)
.+++|+.|++ .+++
T Consensus 337 ~~~~L~~L~l-~~N~ 350 (390)
T 3o6n_A 337 THHTLKNLTL-SHND 350 (390)
T ss_dssp TTCCCSEEEC-CSSC
T ss_pred hhccCCEEEc-CCCC
Confidence 6889999999 8765
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.5e-21 Score=186.29 Aligned_cols=264 Identities=16% Similarity=0.113 Sum_probs=199.6
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCccccccc-ccccccCceeeeEEEcCccCCCCC
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFVVCGGYDRACS 79 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~ 79 (333)
++.+|..++.+++|++|++++|......|..++.+++|++|++++|.....+|.. ++.+++|++|++++|..... ...
T Consensus 290 l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~ 368 (606)
T 3t6q_A 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS-DCC 368 (606)
T ss_dssp CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE-EES
T ss_pred cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc-cCc
Confidence 4578999999999999999999944555778999999999999999655466654 88999999999998877530 011
Q ss_pred ccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccc-cccCCCCCCc
Q 044247 80 LGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERL-LDALGPPPNL 158 (333)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~L 158 (333)
+..+..+++|+.|++....- . ......+..+++|++|++++|.+ .... ...+..+++|
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l-~---~~~~~~~~~l~~L~~L~l~~n~l-----------------~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEP-L---SLKTEAFKECPQLELLDLAFTRL-----------------KVKDAQSPFQNLHLL 427 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSC-E---EECTTTTTTCTTCSEEECTTCCE-----------------ECCTTCCTTTTCTTC
T ss_pred chhcccCCCCCEEECCCCcC-C---cCCHHHhcCCccCCeEECCCCcC-----------------CCcccchhhhCcccC
Confidence 45678889999988875432 1 11123577889999999999852 2222 2347788999
Q ss_pred cEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCC-C---CCCCCCccccceecccccccccccccccCCCCCCCC
Q 044247 159 KELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEH-L---PPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDG 234 (333)
Q Consensus 159 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-l---~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 234 (333)
+.|++++|.... ..+..+..+++|+.|++++|...+. + ..++.+++|+.|++++|. +..++...
T Consensus 428 ~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~--------- 495 (606)
T 3t6q_A 428 KVLNLSHSLLDI--SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHA--------- 495 (606)
T ss_dssp CEEECTTCCCBT--TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTT---------
T ss_pred CEEECCCCccCC--cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhh---------
Confidence 999999998766 4266788899999999999954331 2 237789999999999998 55553322
Q ss_pred CccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccChh
Q 044247 235 SSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACHI 308 (333)
Q Consensus 235 ~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~~ 308 (333)
+..+++|++|+++++. + ....|..+..+++| +|++++|......|..+..+++|+.+++ .+|+-
T Consensus 496 --~~~l~~L~~L~Ls~N~-l-----~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l-~~N~~ 559 (606)
T 3t6q_A 496 --FTSLKMMNHVDLSHNR-L-----TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL-RQNPL 559 (606)
T ss_dssp --TTTCTTCCEEECCSSC-C-----CGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC-TTCCE
T ss_pred --hccccCCCEEECCCCc-c-----CcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC-CCCCc
Confidence 5688999999999974 3 33345567788999 9999997555444556677899999999 87663
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=4.5e-21 Score=182.59 Aligned_cols=266 Identities=17% Similarity=0.127 Sum_probs=164.4
Q ss_pred cccch-hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCccccc-ccccccccCceeeeEEEcCccCCCCCc
Q 044247 3 KLPET-LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLP-VGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 3 ~lp~~-l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
.+|.. +..+++|++|++++|...+..|..++.+++|++|++++|. +..+| ..++.+++|++|++++|.... .+
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~----l~ 139 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSS----LP 139 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC----CC
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCC----CC
Confidence 45554 5667888888888887333444467778888888888773 44444 346777888888887776553 33
Q ss_pred cc-cccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhc-cc-----CCccc----------
Q 044247 81 GS-LKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAG-RR-----ENEED---------- 143 (333)
Q Consensus 81 ~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~-----~~~~~---------- 143 (333)
.. +..+++|+.|++....- .. .....+..+++|++|++++|.+......... +. .+...
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l-~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~ 215 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNL-ER---IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEE 215 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCC-CB---CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSE
T ss_pred HHHhccCCCCCEEEeeCCcC-CC---CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhhe
Confidence 33 46677777776654321 11 0112455667777777777765432111000 00 00000
Q ss_pred ------ccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceeccccc
Q 044247 144 ------EDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 144 ------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~ 216 (333)
....++. ...++|+.|++++|.... +.++..+++|+.|++++|...+..|. ++.+++|+.|++++|.
T Consensus 216 L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 216 LDASHNSINVVRG--PVNVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp EECCSSCCCEEEC--SCCSCCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred eeccCCccccccc--ccCCCCCEEECCCCCCCC----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 0000000 112467777777777665 56677888888888888844333333 7778888888888887
Q ss_pred ccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCC
Q 044247 217 SVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKST 296 (333)
Q Consensus 217 ~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~ 296 (333)
+..++.. ...+++|+.|++++|. +. .+|..+..+++|+.|++++|. +..++ +..+++
T Consensus 290 -l~~l~~~------------~~~l~~L~~L~Ls~N~-l~------~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~ 346 (597)
T 3oja_B 290 -LVALNLY------------GQPIPTLKVLDLSHNH-LL------HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHT 346 (597)
T ss_dssp -CCEEECS------------SSCCTTCCEEECCSSC-CC------CCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCC
T ss_pred -CCCCCcc------------cccCCCCcEEECCCCC-CC------ccCcccccCCCCCEEECCCCC-CCCcC--hhhcCC
Confidence 5555433 4568889999998863 33 344556688999999999865 55554 556889
Q ss_pred cceEEEcccCh
Q 044247 297 LQNLEIWGACH 307 (333)
Q Consensus 297 L~~L~l~~~c~ 307 (333)
|+.|++ .+|+
T Consensus 347 L~~L~l-~~N~ 356 (597)
T 3oja_B 347 LKNLTL-SHND 356 (597)
T ss_dssp CSEEEC-CSSC
T ss_pred CCEEEe-eCCC
Confidence 999999 8765
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2e-20 Score=165.11 Aligned_cols=252 Identities=15% Similarity=0.159 Sum_probs=181.9
Q ss_pred CcccchhcCCCcccEEeecCCCcccccC-ccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELP-QGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
+.+|..+. ++|++|++++|. +..++ ..++.+++|++|++++|......|..++.+++|++|++++|.... .+
T Consensus 44 ~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----l~ 116 (330)
T 1xku_A 44 EKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE----LP 116 (330)
T ss_dssp CSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB----CC
T ss_pred cccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc----cC
Confidence 45676554 689999999998 55554 478999999999999994433347789999999999999887654 23
Q ss_pred cccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccE
Q 044247 81 GSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKE 160 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 160 (333)
..+. ++|+.|++....- .. .....+..+++|++|++++|.+. ........+..+++|+.
T Consensus 117 ~~~~--~~L~~L~l~~n~l-~~---~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 117 EKMP--KTLQELRVHENEI-TK---VRKSVFNGLNQMIVVELGTNPLK---------------SSGIENGAFQGMKKLSY 175 (330)
T ss_dssp SSCC--TTCCEEECCSSCC-CB---BCHHHHTTCTTCCEEECCSSCCC---------------GGGBCTTGGGGCTTCCE
T ss_pred hhhc--ccccEEECCCCcc-cc---cCHhHhcCCccccEEECCCCcCC---------------ccCcChhhccCCCCcCE
Confidence 3322 5788887765321 11 12245778899999999998642 11233456777899999
Q ss_pred EEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCC--CCCCCccccceecccccccccccccccCCCCCCCCCccc
Q 044247 161 LHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLP--PLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVI 238 (333)
Q Consensus 161 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~ 238 (333)
|+++++.... + |..+ +++|+.|++++|. +..++ .++.+++|+.|++++|. ++.++... +.
T Consensus 176 L~l~~n~l~~--l-~~~~--~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~ 237 (330)
T 1xku_A 176 IRIADTNITT--I-PQGL--PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGS-----------LA 237 (330)
T ss_dssp EECCSSCCCS--C-CSSC--CTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECTTT-----------GG
T ss_pred EECCCCcccc--C-Cccc--cccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeChhh-----------cc
Confidence 9999988877 6 6544 4899999999984 44443 27888999999999987 55554322 56
Q ss_pred cCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcc-cC------CCCCcceEEEcccChh
Q 044247 239 AFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDH-LL------QKSTLQNLEIWGACHI 308 (333)
Q Consensus 239 ~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~------~l~~L~~L~l~~~c~~ 308 (333)
.+++|++|+++++ .+. .+|..+..+++|++|++++| .++.++.. +. ..++|+.+++ .+++.
T Consensus 238 ~l~~L~~L~L~~N-~l~------~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l-~~N~~ 305 (330)
T 1xku_A 238 NTPHLRELHLNNN-KLV------KVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL-FSNPV 305 (330)
T ss_dssp GSTTCCEEECCSS-CCS------SCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC-CSSSS
T ss_pred CCCCCCEEECCCC-cCc------cCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe-ecCcc
Confidence 7899999999986 443 34455668899999999985 45555542 21 2478899999 88774
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=3.8e-20 Score=171.07 Aligned_cols=263 Identities=19% Similarity=0.238 Sum_probs=118.2
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLN 87 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 87 (333)
++.+++|++|++++|. +..++. ++.+++|++|++++| .+..++. +..+++|++|++++|.... ...+..++
T Consensus 86 ~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~-----~~~~~~l~ 156 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNTISD-----ISALSGLT 156 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEEECC-----CGGGTTCT
T ss_pred hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCccCC-----ChhhccCC
Confidence 5555555555555554 333333 555666666666665 3444443 5666666666666665442 12344444
Q ss_pred cCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhc--c----cCCcccccccccccCCCCCCccEE
Q 044247 88 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAG--R----RENEEDEDERLLDALGPPPNLKEL 161 (333)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~l~~~~~L~~L 161 (333)
+|+.|.+.. .+... ..+..+++|++|++++|.+.....-... + ..++ ...... .+..+++|+.|
T Consensus 157 ~L~~L~l~~--~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n--~l~~~~-~~~~l~~L~~L 226 (466)
T 1o6v_A 157 SLQQLSFGN--QVTDL-----KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN--QISDIT-PLGILTNLDEL 226 (466)
T ss_dssp TCSEEEEEE--SCCCC-----GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS--CCCCCG-GGGGCTTCCEE
T ss_pred cccEeecCC--cccCc-----hhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCC--cccccc-cccccCCCCEE
Confidence 444444431 11110 1244555666666666544321100000 0 0000 000000 12334455555
Q ss_pred EEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCC----------CCC
Q 044247 162 HIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGV----------ESD 231 (333)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~----------~~~ 231 (333)
++++|.... + ..+..+++|+.|++++| .+..+++++.+++|+.|++++|. +..++. +... ...
T Consensus 227 ~l~~n~l~~--~--~~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 227 SLNGNQLKD--I--GTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQL 299 (466)
T ss_dssp ECCSSCCCC--C--GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCC
T ss_pred ECCCCCccc--c--hhhhcCCCCCEEECCCC-ccccchhhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcc
Confidence 555554444 2 23444555555555555 22333334455555555555554 222221 0000 000
Q ss_pred CCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 232 TDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 232 ~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
+...++..+++|+.|++++| .+..+. . +..+++|++|++++| .++.++ .+..+++|+.|++ .+|.
T Consensus 300 ~~~~~~~~l~~L~~L~L~~n-~l~~~~------~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l-~~n~ 364 (466)
T 1o6v_A 300 EDISPISNLKNLTYLTLYFN-NISDIS------P-VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSA-GHNQ 364 (466)
T ss_dssp SCCGGGGGCTTCSEEECCSS-CCSCCG------G-GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEEC-CSSC
T ss_pred cCchhhcCCCCCCEEECcCC-cCCCch------h-hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeC-CCCc
Confidence 00111334455555555554 222211 1 345677777777765 444443 3555777777777 7664
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.1e-20 Score=167.08 Aligned_cols=250 Identities=13% Similarity=0.128 Sum_probs=180.0
Q ss_pred CCcccchhcCCCcccEEeecCCCccccc-CccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCC
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLREL-PQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRAC 78 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~ 78 (333)
++.+|..+. ++|++|++++|. +..+ |..+..+++|++|++++|. +..+ |..++.+++|++|++++|....
T Consensus 45 l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~---- 116 (332)
T 2ft3_A 45 LKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLVE---- 116 (332)
T ss_dssp CSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSCCCS----
T ss_pred ccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCcCCc----
Confidence 356777664 689999999998 5544 5679999999999999994 4554 7779999999999999887654
Q ss_pred CccccccCccCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCC
Q 044247 79 SLGSLKKLNLLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPP 156 (333)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (333)
.+..+. ++|+.|++... ..++. ..+..+++|++|++++|.+.. ....+..+..+
T Consensus 117 l~~~~~--~~L~~L~l~~n~i~~~~~------~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~~~l- 172 (332)
T 2ft3_A 117 IPPNLP--SSLVELRIHDNRIRKVPK------GVFSGLRNMNCIEMGGNPLEN---------------SGFEPGAFDGL- 172 (332)
T ss_dssp CCSSCC--TTCCEEECCSSCCCCCCS------GGGSSCSSCCEEECCSCCCBG---------------GGSCTTSSCSC-
T ss_pred cCcccc--ccCCEEECCCCccCccCH------hHhCCCccCCEEECCCCcccc---------------CCCCcccccCC-
Confidence 333332 67888877643 33322 357788999999999996321 12334455555
Q ss_pred CccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCC--CCCCCccccceecccccccccccccccCCCCCCCC
Q 044247 157 NLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLP--PLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDG 234 (333)
Q Consensus 157 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 234 (333)
+|+.|++++|.... + |..+ +++|+.|++++|. +..++ .++.+++|+.|++++|. ++.++...
T Consensus 173 ~L~~L~l~~n~l~~--l-~~~~--~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~--------- 236 (332)
T 2ft3_A 173 KLNYLRISEAKLTG--I-PKDL--PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGS--------- 236 (332)
T ss_dssp CCSCCBCCSSBCSS--C-CSSS--CSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTG---------
T ss_pred ccCEEECcCCCCCc--c-Cccc--cCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CCcCChhH---------
Confidence 89999999988877 6 6544 4789999999984 44444 37888999999999987 55554322
Q ss_pred CccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCc-ccCC------CCCcceEEEcccCh
Q 044247 235 SSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD-HLLQ------KSTLQNLEIWGACH 307 (333)
Q Consensus 235 ~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~------l~~L~~L~l~~~c~ 307 (333)
+..+++|++|+++++ .+. .+|..+..+++|++|+++++ .++.++. .+.. .++|+.+++ .+++
T Consensus 237 --~~~l~~L~~L~L~~N-~l~------~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l-~~N~ 305 (332)
T 2ft3_A 237 --LSFLPTLRELHLDNN-KLS------RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL-FNNP 305 (332)
T ss_dssp --GGGCTTCCEEECCSS-CCC------BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEEC-CSSS
T ss_pred --hhCCCCCCEEECCCC-cCe------ecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEe-ecCc
Confidence 568889999999986 443 34455668899999999985 4555543 2221 467899999 8887
Q ss_pred hh
Q 044247 308 IL 309 (333)
Q Consensus 308 ~l 309 (333)
..
T Consensus 306 ~~ 307 (332)
T 2ft3_A 306 VP 307 (332)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=3.3e-21 Score=171.78 Aligned_cols=263 Identities=14% Similarity=0.101 Sum_probs=178.4
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCc-cccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCC
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQ-GIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRAC 78 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~ 78 (333)
++.+|..+. ++|++|++++|. +..+|. .+.++++|++|++++| .+..+ |..++.+++|++|++++|.... .
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~ 115 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSN---L 115 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSS---C
T ss_pred ccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCc---C
Confidence 356777655 488999999988 555554 6888999999999888 44554 4558888999999998887653 2
Q ss_pred CccccccCccCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCC
Q 044247 79 SLGSLKKLNLLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPP 156 (333)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (333)
....+..+++|+.|++... ..++. ...+..+++|++|++++|.. ........+..++
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~~l~~L~~L~l~~n~~----------------~~~~~~~~~~~l~ 174 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGE-----TSLFSHLTKLQILRVGNMDT----------------FTKIQRKDFAGLT 174 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCS-----SCSCTTCTTCCEEEEEESSS----------------CCEECTTTTTTCC
T ss_pred CHhHhCCCccCCEEECCCCCCcccCc-----hhhhccCCCCcEEECCCCcc----------------ccccCHHHccCCC
Confidence 2233677888888887643 22221 01456778888999888731 1222245677788
Q ss_pred CccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCC
Q 044247 157 NLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDG 234 (333)
Q Consensus 157 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 234 (333)
+|+.|++++|.... +.+..+..+++|+.|++++|. ++.++. ++.+++|+.|++++|. ++.++...+..
T Consensus 175 ~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~------ 244 (353)
T 2z80_A 175 FLEELEIDASDLQS--YEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHFSELST------ 244 (353)
T ss_dssp EEEEEEEEETTCCE--ECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCCC----------
T ss_pred CCCEEECCCCCcCc--cCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-ccccccccccc------
Confidence 88899988887665 336677788889999998884 444443 3457888999998887 54443222211
Q ss_pred CccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCccc-CCCCCcceEEEcccCh
Q 044247 235 SSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHL-LQKSTLQNLEIWGACH 307 (333)
Q Consensus 235 ~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~~c~ 307 (333)
....+.++.+++.++ .+.+.... .+|+.+..+++|++|++++| .++.+|..+ ..+++|+.|++ .+|+
T Consensus 245 --~~~~~~l~~l~L~~~-~l~~~~l~-~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L-~~N~ 312 (353)
T 2z80_A 245 --GETNSLIKKFTFRNV-KITDESLF-QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL-HTNP 312 (353)
T ss_dssp ----CCCCCCEEEEESC-BCCHHHHH-HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC-CSSC
T ss_pred --ccccchhhccccccc-cccCcchh-hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe-eCCC
Confidence 335567777777764 23222111 24566778999999999985 667888764 78999999999 8764
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=6.2e-20 Score=173.58 Aligned_cols=90 Identities=14% Similarity=0.012 Sum_probs=66.1
Q ss_pred Cccc-chhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCc
Q 044247 2 EKLP-ETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 2 ~~lp-~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
..+| ..++++++|++|++++|...+..|..++++++|++|++++| .+..+|.. .+++|++|++++|.... ...+
T Consensus 65 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~l~~--l~~p 139 (562)
T 3a79_B 65 SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFNDFDV--LPVC 139 (562)
T ss_dssp CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEECCSSCCSB--CCCC
T ss_pred cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEECCCCCccc--cCch
Confidence 3444 57888888888888888733444677888888888888888 56677765 78888888888887653 2234
Q ss_pred cccccCccCceeEecC
Q 044247 81 GSLKKLNLLRQCSIDG 96 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~ 96 (333)
..+.++++|+.|++..
T Consensus 140 ~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 140 KEFGNLTKLTFLGLSA 155 (562)
T ss_dssp GGGGGCTTCCEEEEEC
T ss_pred HhhcccCcccEEecCC
Confidence 6778888888877765
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=3.8e-20 Score=163.41 Aligned_cols=240 Identities=15% Similarity=0.201 Sum_probs=162.0
Q ss_pred cccEEeecCCCcccccCccccccccccEEecCCCCCcccccc-cccccccCceeeeEEEcCccCCCCCccccccCccCce
Q 044247 13 NLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQ 91 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 91 (333)
++++++++++. +..+|..+. ++|+.|++++| .+..++. .++.+++|++|++.+|... ...+..+..+++|+.
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCC---CBCTTTTTTCTTCCE
T ss_pred CCeEEEecCCC-ccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCC---eeCHHHhcCCCCCCE
Confidence 78888888877 667776553 67888888888 4555554 5788888888888877765 333556777888888
Q ss_pred eEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCC
Q 044247 92 CSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGR 169 (333)
Q Consensus 92 L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 169 (333)
|++... ..++. .+ .++|++|++++|.+ .......+..+++|+.|++++|...
T Consensus 105 L~Ls~n~l~~l~~-------~~--~~~L~~L~l~~n~l-----------------~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 105 LYLSKNQLKELPE-------KM--PKTLQELRVHENEI-----------------TKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp EECCSSCCSBCCS-------SC--CTTCCEEECCSSCC-----------------CBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCccCh-------hh--cccccEEECCCCcc-----------------cccCHhHhcCCccccEEECCCCcCC
Confidence 777542 22222 11 26788888888853 2222344667788888888887664
Q ss_pred CCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeec
Q 044247 170 RNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFW 249 (333)
Q Consensus 170 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 249 (333)
.....+..+..+++|+.|++++| .+..+|.. ..++|++|++++|. ++.++... +..+++|++|+++
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~-----------~~~l~~L~~L~Ls 224 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTELHLDGNK-ITKVDAAS-----------LKGLNNLAKLGLS 224 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS-CCTTCSEEECTTSC-CCEECTGG-----------GTTCTTCCEEECC
T ss_pred ccCcChhhccCCCCcCEEECCCC-ccccCCcc-ccccCCEEECCCCc-CCccCHHH-----------hcCCCCCCEEECC
Confidence 21011556777888888888887 44555542 23788888888887 55443221 5577888888888
Q ss_pred cCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 250 SMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 250 ~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
++. +..+. +..+..+++|++|++++| .++.+|..+..+++|+.|++ .+|.
T Consensus 225 ~n~-l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l-~~N~ 274 (330)
T 1xku_A 225 FNS-ISAVD-----NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYL-HNNN 274 (330)
T ss_dssp SSC-CCEEC-----TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEEC-CSSC
T ss_pred CCc-CceeC-----hhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEEC-CCCc
Confidence 753 33322 234557788888888885 56678877777888888888 7765
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=3.4e-20 Score=163.84 Aligned_cols=250 Identities=18% Similarity=0.205 Sum_probs=155.9
Q ss_pred CcccchhcCC------CcccEEeecCCCcccccCccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCcc
Q 044247 2 EKLPETLCEL------YNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGY 74 (333)
Q Consensus 2 ~~lp~~l~~l------~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~ 74 (333)
.++|..+... .++++++++++. +..+|..+. ++|+.|++++| .+..+ |..+..+++|++|++.+|...
T Consensus 17 ~~lp~~~~~~cp~~c~c~l~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~- 91 (332)
T 2ft3_A 17 DSLPPTYSAMCPFGCHCHLRVVQCSDLG-LKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKIS- 91 (332)
T ss_dssp --------CCCCSSCEEETTEEECCSSC-CSSCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC-
T ss_pred ccCCCcccCCCCCCCcccCCEEECCCCC-ccccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccC-
Confidence 3455544432 368888888877 667776553 67888888887 44554 446778888888888877655
Q ss_pred CCCCCccccccCccCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccC
Q 044247 75 DRACSLGSLKKLNLLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDAL 152 (333)
Q Consensus 75 ~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (333)
...+..+..+++|+.|++... ..++. .+ .++|++|++++|.+. ......+
T Consensus 92 --~~~~~~~~~l~~L~~L~L~~n~l~~l~~-------~~--~~~L~~L~l~~n~i~-----------------~~~~~~~ 143 (332)
T 2ft3_A 92 --KIHEKAFSPLRKLQKLYISKNHLVEIPP-------NL--PSSLVELRIHDNRIR-----------------KVPKGVF 143 (332)
T ss_dssp --EECGGGSTTCTTCCEEECCSSCCCSCCS-------SC--CTTCCEEECCSSCCC-----------------CCCSGGG
T ss_pred --ccCHhHhhCcCCCCEEECCCCcCCccCc-------cc--cccCCEEECCCCccC-----------------ccCHhHh
Confidence 233556777788888777542 22222 11 167888888887532 1222346
Q ss_pred CCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCC
Q 044247 153 GPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDT 232 (333)
Q Consensus 153 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 232 (333)
..+++|+.|++++|........+..+..+ +|+.|++++| .+..+|.. ..++|++|++++|. ++.++...
T Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~-i~~~~~~~------- 212 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKD-LPETLNELHLDHNK-IQAIELED------- 212 (332)
T ss_dssp SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSS-SCSSCSCCBCCSSC-CCCCCTTS-------
T ss_pred CCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcc-ccCCCCEEECCCCc-CCccCHHH-------
Confidence 67788888888877664200114445445 7888888887 34555541 23678888888876 44443221
Q ss_pred CCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 233 DGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 233 ~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
+..+++|++|+++++ .+..+ .+..+..+++|++|++++| .++.+|..+..+++|+.|++ .++.
T Consensus 213 ----l~~l~~L~~L~L~~N-~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l-~~N~ 275 (332)
T 2ft3_A 213 ----LLRYSKLYRLGLGHN-QIRMI-----ENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYL-HTNN 275 (332)
T ss_dssp ----STTCTTCSCCBCCSS-CCCCC-----CTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEEC-CSSC
T ss_pred ----hcCCCCCCEEECCCC-cCCcC-----ChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEEC-CCCC
Confidence 457778888888875 33222 2234557788888888874 56677777777888888888 7764
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=4.8e-20 Score=170.41 Aligned_cols=241 Identities=22% Similarity=0.303 Sum_probs=132.6
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLN 87 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 87 (333)
+..+++|++|++++|. +..+|. +..+++|++|++++| .+..++. ++.+++|++|++++|.... . ..+..++
T Consensus 64 ~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~----~-~~~~~l~ 134 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITD----I-DPLKNLT 134 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCC----C-GGGTTCT
T ss_pred hhhhcCCCEEECCCCc-cCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCCCCC----C-hHHcCCC
Confidence 5566667777777666 555554 666667777777666 3444444 6666677777766665442 1 2256666
Q ss_pred cCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeec
Q 044247 88 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYR 167 (333)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (333)
+|+.|++.... +... ..+..+++|++|++..+ +. . ...+..+++|+.|++++|.
T Consensus 135 ~L~~L~l~~n~-l~~~-----~~~~~l~~L~~L~l~~~-~~------------------~-~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 135 NLNRLELSSNT-ISDI-----SALSGLTSLQQLSFGNQ-VT------------------D-LKPLANLTTLERLDISSNK 188 (466)
T ss_dssp TCSEEEEEEEE-ECCC-----GGGTTCTTCSEEEEEES-CC------------------C-CGGGTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-cCCC-----hhhccCCcccEeecCCc-cc------------------C-chhhccCCCCCEEECcCCc
Confidence 66665554321 1111 13555666777766532 11 1 1225566777777777766
Q ss_pred CCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEe
Q 044247 168 GRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLR 247 (333)
Q Consensus 168 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~ 247 (333)
... + ..+..+++|+.|++++| .+...++++.+++|+.|++++|. ++.++. +..+++|++|+
T Consensus 189 l~~--~--~~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------------l~~l~~L~~L~ 249 (466)
T 1o6v_A 189 VSD--I--SVLAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGNQ-LKDIGT-------------LASLTNLTDLD 249 (466)
T ss_dssp CCC--C--GGGGGCTTCSEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG-------------GGGCTTCSEEE
T ss_pred CCC--C--hhhccCCCCCEEEecCC-cccccccccccCCCCEEECCCCC-cccchh-------------hhcCCCCCEEE
Confidence 555 3 33556677777777766 33444445566666666666665 333321 33444455554
Q ss_pred eccCcccccc------------ccC----CccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 248 FWSMSELEEW------------DLG----TAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 248 l~~~~~L~~~------------~~~----~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
+++|. +..+ .++ ..++. +..+++|+.|++++| .++.++. +..+++|+.|++ ++|.
T Consensus 250 l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L-~~n~ 320 (466)
T 1o6v_A 250 LANNQ-ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTL-YFNN 320 (466)
T ss_dssp CCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEEC-CSSC
T ss_pred CCCCc-cccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEEC-cCCc
Confidence 44431 1111 000 01111 446777777777775 3444444 556788888888 7764
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=8.2e-20 Score=174.23 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=34.0
Q ss_pred CCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceeccccc
Q 044247 152 LGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMK 216 (333)
Q Consensus 152 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~ 216 (333)
+..+++|+.|+++++.... + + .+..+++|+.|++++|.. +.+|.+ .+++|+.|++++|.
T Consensus 281 ~~~l~~L~~L~l~~~~~~~--l-~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKY--L-E-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNK 339 (606)
T ss_dssp CGGGTTCSEEEEESCCCCC--C-C-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCS
T ss_pred cccCCCCCEEEecCccchh--h-h-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCc
Confidence 3345666666666666655 4 4 455566666666666633 555544 55555555555553
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.2e-20 Score=179.71 Aligned_cols=246 Identities=15% Similarity=0.153 Sum_probs=169.1
Q ss_pred CCCcccEEeecCCCcccccCcc-ccccccccEEecCCCCCccccc-ccccccccCceeeeEEEcCccCCCCCccccccCc
Q 044247 10 ELYNLERVNVSGCSHLRELPQG-IGKLRKLMYLDNDYTDSLRYLP-VGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLN 87 (333)
Q Consensus 10 ~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 87 (333)
.+.+++++++.++. +..+|.. +..+++|++|++++| .+..++ ..++.+++|++|++++|... ...+..+..++
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCT
T ss_pred cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCC---CCCHHHHcCCC
Confidence 46889999999998 7777765 577999999999999 455554 47899999999999998876 33445568899
Q ss_pred cCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEee
Q 044247 88 LLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHE 165 (333)
Q Consensus 88 ~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 165 (333)
+|+.|++... ..++. ..+..+++|++|++++|.+. ...+..+..+++|+.|++++
T Consensus 124 ~L~~L~L~~n~l~~l~~------~~~~~l~~L~~L~Ls~N~l~-----------------~~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPR------GIFHNTPKLTTLSMSNNNLE-----------------RIEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp TCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCC-----------------BCCTTTTTTCTTCCEEECTT
T ss_pred CCCEEEeeCCCCCCCCH------HHhccCCCCCEEEeeCCcCC-----------------CCChhhhhcCCcCcEEECcC
Confidence 9999888653 23332 24678899999999999643 22334566667777777766
Q ss_pred ecCCCCccCchhhh-------------------------------------cCCCccEEEeecCCCCCCCCCCCCCcccc
Q 044247 166 YRGRRNVVPKNWVM-------------------------------------SLTNLRVLHLFECRNCEHLPPLGKLTSLE 208 (333)
Q Consensus 166 ~~~~~~~~~~~~~~-------------------------------------~~~~L~~L~l~~~~~~~~l~~~~~l~~L~ 208 (333)
|.... ++...+. .+++|+.|++++| .+...+.++.+++|+
T Consensus 181 N~l~~--~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n-~l~~~~~l~~l~~L~ 257 (597)
T 3oja_B 181 NRLTH--VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLV 257 (597)
T ss_dssp SCCSB--CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS-CCCCCGGGGGCTTCS
T ss_pred CCCCC--cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCC-CCCCChhhccCCCCC
Confidence 65554 2111100 1234555555555 233344466777788
Q ss_pred ceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCC
Q 044247 209 DLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALP 288 (333)
Q Consensus 209 ~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 288 (333)
.|++++|. +..++... +..+++|+.|+++++ .+..++ ..+..+++|+.|++++| .+..+|
T Consensus 258 ~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~l~------~~~~~l~~L~~L~Ls~N-~l~~i~ 317 (597)
T 3oja_B 258 EVDLSYNE-LEKIMYHP-----------FVKMQRLERLYISNN-RLVALN------LYGQPIPTLKVLDLSHN-HLLHVE 317 (597)
T ss_dssp EEECCSSC-CCEEESGG-----------GTTCSSCCEEECTTS-CCCEEE------CSSSCCTTCCEEECCSS-CCCCCG
T ss_pred EEECCCCc-cCCCCHHH-----------hcCccCCCEEECCCC-CCCCCC------cccccCCCCcEEECCCC-CCCccC
Confidence 88888776 43332211 457788888888874 444443 33346888999999885 455777
Q ss_pred cccCCCCCcceEEEcccCh
Q 044247 289 DHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 289 ~~~~~l~~L~~L~l~~~c~ 307 (333)
..+..+++|+.|++ ++|.
T Consensus 318 ~~~~~l~~L~~L~L-~~N~ 335 (597)
T 3oja_B 318 RNQPQFDRLENLYL-DHNS 335 (597)
T ss_dssp GGHHHHTTCSEEEC-CSSC
T ss_pred cccccCCCCCEEEC-CCCC
Confidence 77777888999999 8876
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=3e-20 Score=167.86 Aligned_cols=243 Identities=11% Similarity=0.048 Sum_probs=164.8
Q ss_pred Cccc-chhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCccccccc-ccccccCceeeeEEEcCccCCCCC
Q 044247 2 EKLP-ETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFVVCGGYDRACS 79 (333)
Q Consensus 2 ~~lp-~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~ 79 (333)
..+| ..++.+++|++|++++|......|..++.+++|++|++++| .+..+|.. ++.+++|++|++++|.... ..
T Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~---~~ 157 (390)
T 3o6n_A 82 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER---IE 157 (390)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB---CC
T ss_pred cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCc---cC
Confidence 3444 47888999999999999833444566888999999999998 66677766 4789999999998887653 33
Q ss_pred ccccccCccCceeEecCCCCCCChhhHHHHhhcccCC-------------------ccceEEeecCCCCCchh--hhc--
Q 044247 80 LGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKN-------------------LFDLELDFDNLRDGDEE--QAG-- 136 (333)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~-------------------L~~L~l~~~~~~~~~~~--~~~-- 136 (333)
+..+..+++|+.|++....- ... .+..+++ |++|++++|.+...... ...
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l-~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 230 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRL-THV------DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 230 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCC-SBC------CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCE
T ss_pred hhhccCCCCCCEEECCCCcC-Ccc------ccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccE
Confidence 44567788888877764321 111 1222233 33334333332110000 000
Q ss_pred -ccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceeccc
Q 044247 137 -RRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAG 214 (333)
Q Consensus 137 -~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~ 214 (333)
...++ .... ...+..+++|+.|++++|.... +.+..+..+++|+.|++++| .+..++. .+.+++|+.|++++
T Consensus 231 L~l~~n--~l~~-~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 231 LKLQHN--NLTD-TAWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp EECCSS--CCCC-CGGGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCS
T ss_pred EECCCC--CCcc-cHHHcCCCCccEEECCCCcCCC--cChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCC
Confidence 00011 1111 2456778999999999998776 43677888999999999999 4555555 66789999999999
Q ss_pred ccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcC
Q 044247 215 MKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRE 283 (333)
Q Consensus 215 ~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 283 (333)
|. +..++.. +..+++|++|+++++ .+..++ +..+++|++|++++++.
T Consensus 305 n~-l~~~~~~------------~~~l~~L~~L~L~~N-~i~~~~--------~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 305 NH-LLHVERN------------QPQFDRLENLYLDHN-SIVTLK--------LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SC-CCCCGGG------------HHHHTTCSEEECCSS-CCCCCC--------CCTTCCCSEEECCSSCE
T ss_pred Cc-ceecCcc------------ccccCcCCEEECCCC-ccceeC--------chhhccCCEEEcCCCCc
Confidence 97 6666554 567899999999996 455543 33689999999998653
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=6.5e-20 Score=171.80 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=80.3
Q ss_pred ccc-chhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 3 KLP-ETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 3 ~lp-~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
.+| ..+.++++|++|++++|...+..|..++++++|++|++++| .+..+|.. .+++|++|++++|.... ...+.
T Consensus 35 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L~~N~l~~--~~~p~ 109 (520)
T 2z7x_B 35 ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDLSFNAFDA--LPICK 109 (520)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEECCSSCCSS--CCCCG
T ss_pred ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEeccCCcccc--ccchh
Confidence 344 56788888888888888743445777888888888888888 55677765 78888888888877653 23456
Q ss_pred ccccCccCceeEecCCCCCCChhhHHHHhhcccCCc--cceEEeecCC
Q 044247 82 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNL--FDLELDFDNL 127 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~ 127 (333)
.+.++++|+.|++.... +.. ..+..+++| ++|++++|.+
T Consensus 110 ~~~~l~~L~~L~L~~n~-l~~------~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 110 EFGNMSQLKFLGLSTTH-LEK------SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp GGGGCTTCCEEEEEESS-CCG------GGGGGGTTSCEEEEEEEECTT
T ss_pred hhccCCcceEEEecCcc-cch------hhccccccceeeEEEeecccc
Confidence 77888888887776532 221 245556667 8888888765
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=5.9e-20 Score=168.52 Aligned_cols=242 Identities=17% Similarity=0.242 Sum_probs=163.9
Q ss_pred ccEEeecCCCcccccCccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCCCccccccCccCcee
Q 044247 14 LERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQC 92 (333)
Q Consensus 14 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 92 (333)
.+.++..+.. +..+|..+. ++++.|++++| .+..+ +..+..+++|++|++++|... ......+..+++|+.|
T Consensus 45 ~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 45 FSKVICVRKN-LREVPDGIS--TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIR---TIEIGAFNGLANLNTL 117 (440)
T ss_dssp SCEEECCSCC-CSSCCSCCC--TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCC---EECGGGGTTCSSCCEE
T ss_pred CCEEEeCCCC-cCcCCCCCC--CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCC---ccChhhccCCccCCEE
Confidence 4455555554 666776554 56777777777 34443 345677777777777776654 2233456667777777
Q ss_pred EecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCC
Q 044247 93 SIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRR 170 (333)
Q Consensus 93 ~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 170 (333)
++... ..++. ..+..+++|++|++++|.+ .......+..+++|+.|+++++....
T Consensus 118 ~L~~n~l~~~~~------~~~~~l~~L~~L~L~~N~i-----------------~~~~~~~~~~l~~L~~L~l~~~~~l~ 174 (440)
T 3zyj_A 118 ELFDNRLTTIPN------GAFVYLSKLKELWLRNNPI-----------------ESIPSYAFNRIPSLRRLDLGELKRLS 174 (440)
T ss_dssp ECCSSCCSSCCT------TTSCSCSSCCEEECCSCCC-----------------CEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred ECCCCcCCeeCH------hHhhccccCceeeCCCCcc-----------------cccCHHHhhhCcccCEeCCCCCCCcc
Confidence 66542 22222 2466778888899888852 22223467788899999998865444
Q ss_pred CccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeecc
Q 044247 171 NVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWS 250 (333)
Q Consensus 171 ~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 250 (333)
. +++..+..+++|+.|++++| .++.+|.+..+++|+.|++++|. ++.++... +..+++|++|++.+
T Consensus 175 ~-i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 175 Y-ISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNH-LSAIRPGS-----------FQGLMHLQKLWMIQ 240 (440)
T ss_dssp E-ECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSC-CCEECTTT-----------TTTCTTCCEEECTT
T ss_pred e-eCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCc-cCccChhh-----------hccCccCCEEECCC
Confidence 2 42446778899999999998 56778888888999999999987 55554322 56788999999988
Q ss_pred CccccccccCCccccccccCCCcceEecccCcCcccCCc-ccCCCCCcceEEEcccCh
Q 044247 251 MSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD-HLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 251 ~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~c~ 307 (333)
+ .+..+. +..+..+++|++|++++| .++.++. .+..+++|+.|++ .++|
T Consensus 241 n-~l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L-~~Np 290 (440)
T 3zyj_A 241 S-QIQVIE-----RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHL-HHNP 290 (440)
T ss_dssp C-CCCEEC-----TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEEC-CSSC
T ss_pred C-ceeEEC-----hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEc-CCCC
Confidence 5 343332 234557899999999985 5656554 4567899999999 7654
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=6.6e-20 Score=168.73 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=56.9
Q ss_pred chhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcccccc
Q 044247 6 ETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKK 85 (333)
Q Consensus 6 ~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 85 (333)
..++++++|++|++++|. +..+| .++.+++|++|++++| .+..+| ++.+++|++|++++|.... . .+..
T Consensus 36 ~~~~~l~~L~~L~Ls~n~-l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~----~--~~~~ 104 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSS-ITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTN----L--DVTP 104 (457)
T ss_dssp EEHHHHTTCCEEECCSSC-CCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSC----C--CCTT
T ss_pred cChhHcCCCCEEEccCCC-cccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCce----e--ecCC
Confidence 345566666777776665 44455 3666666666666666 344443 5566666666666665442 1 1455
Q ss_pred CccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCC
Q 044247 86 LNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNL 127 (333)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 127 (333)
+++|+.|++.... +... .+..+++|++|++++|.+
T Consensus 105 l~~L~~L~L~~N~-l~~l------~~~~l~~L~~L~l~~N~l 139 (457)
T 3bz5_A 105 LTKLTYLNCDTNK-LTKL------DVSQNPLLTYLNCARNTL 139 (457)
T ss_dssp CTTCCEEECCSSC-CSCC------CCTTCTTCCEEECTTSCC
T ss_pred CCcCCEEECCCCc-CCee------cCCCCCcCCEEECCCCcc
Confidence 5566665554321 1111 134455555555555543
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=7.1e-20 Score=168.59 Aligned_cols=242 Identities=19% Similarity=0.226 Sum_probs=166.0
Q ss_pred ccEEeecCCCcccccCccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCCCccccccCccCcee
Q 044247 14 LERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQC 92 (333)
Q Consensus 14 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 92 (333)
...++..+.. +..+|..+. +++++|++++| .+..+ |..+..+++|++|++++|... ...+..+..+++|+.|
T Consensus 56 ~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTRRG-LSEVPQGIP--SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIR---QIEVGAFNGLASLNTL 128 (452)
T ss_dssp SCEEECCSSC-CSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEE
T ss_pred CcEEEECCCC-cCccCCCCC--CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccC---CcChhhccCcccCCEE
Confidence 3456555554 666666443 57777777777 34443 455777777777777777654 2233456667777777
Q ss_pred EecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCC
Q 044247 93 SIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRR 170 (333)
Q Consensus 93 ~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 170 (333)
++... ..++. ..+..+++|++|++++|.+ .......+..+++|+.|+++++....
T Consensus 129 ~L~~n~l~~~~~------~~~~~l~~L~~L~L~~N~l-----------------~~~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 129 ELFDNWLTVIPS------GAFEYLSKLRELWLRNNPI-----------------ESIPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp ECCSSCCSBCCT------TTSSSCTTCCEEECCSCCC-----------------CEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred ECCCCcCCccCh------hhhcccCCCCEEECCCCCc-----------------ceeCHhHHhcCCcccEEeCCCCCCcc
Confidence 66542 22222 2466778899999988853 22223467788999999998865444
Q ss_pred CccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeecc
Q 044247 171 NVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWS 250 (333)
Q Consensus 171 ~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 250 (333)
. +++..+..+++|+.|++++| .+..+|.+..+++|+.|++++|. +..++... +..+++|++|++++
T Consensus 186 ~-i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 186 Y-ISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPGS-----------FHGLSSLKKLWVMN 251 (452)
T ss_dssp E-ECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGGG-----------GTTCTTCCEEECTT
T ss_pred c-cChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCc-CcccCccc-----------ccCccCCCEEEeCC
Confidence 2 42445778999999999998 56677888889999999999988 55553322 56888999999998
Q ss_pred CccccccccCCccccccccCCCcceEecccCcCcccCCc-ccCCCCCcceEEEcccCh
Q 044247 251 MSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD-HLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 251 ~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~c~ 307 (333)
+ .+..+ .+..+..+++|++|++++| .++.++. .+..+++|+.|++ .+++
T Consensus 252 n-~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L-~~Np 301 (452)
T 3zyi_A 252 S-QVSLI-----ERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHL-HHNP 301 (452)
T ss_dssp S-CCCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEEC-CSSC
T ss_pred C-cCceE-----CHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEc-cCCC
Confidence 5 34333 2344567899999999985 5666654 4567899999999 7654
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=1.7e-20 Score=178.94 Aligned_cols=249 Identities=18% Similarity=0.119 Sum_probs=143.7
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLN 87 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 87 (333)
+..+++|++|++.++. +..+| .+..+++|+.|++++|. +..+| .+ .+++|++|++.+|.... ...+..++
T Consensus 281 ~~~l~~L~~L~l~~~~-~~~l~-~l~~~~~L~~L~l~~n~-l~~lp-~~-~l~~L~~L~l~~n~~~~-----~~~~~~l~ 350 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVS-IKYLE-DVPKHFKWQSLSIIRCQ-LKQFP-TL-DLPFLKSLTLTMNKGSI-----SFKKVALP 350 (606)
T ss_dssp CGGGTTCSEEEEESCC-CCCCC-CCCTTCCCSEEEEESCC-CSSCC-CC-CCSSCCEEEEESCSSCE-----ECCCCCCT
T ss_pred cccCCCCCEEEecCcc-chhhh-hccccccCCEEEccccc-Ccccc-cC-CCCccceeeccCCcCcc-----chhhccCC
Confidence 6778888888888887 67777 68888888888888884 47777 45 78888888888774432 11445677
Q ss_pred cCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeec
Q 044247 88 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYR 167 (333)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (333)
+|+.|++....- ... ......+..+++|++|++++|. ....+..+..+++|+.|++++|.
T Consensus 351 ~L~~L~ls~n~l-~~~-~~~~~~~~~~~~L~~L~L~~n~------------------l~~~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 351 SLSYLDLSRNAL-SFS-GCCSYSDLGTNSLRHLDLSFNG------------------AIIMSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp TCCEEECCSSCE-EEE-EECCHHHHCCSCCCEEECCSCS------------------EEEECCCCTTCTTCCEEECTTSE
T ss_pred CCCEEECcCCcc-CCC-cchhhhhccCCcccEeECCCCc------------------cccchhhccCCCCCCeeECCCCc
Confidence 777777664321 100 0011345566777777777773 22233444455555555555544
Q ss_pred CCCCccCc-hhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccc------------------------cccc
Q 044247 168 GRRNVVPK-NWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKS------------------------VKRV 221 (333)
Q Consensus 168 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~------------------------l~~i 221 (333)
... ..+ ..+..+++|+.|++++|......+. ++.+++|++|++++|.. +..+
T Consensus 411 l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 411 LKR--VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp EES--TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred cCC--ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence 333 201 2344455555555555433222222 44444555555544441 2222
Q ss_pred cccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCC-CcceE
Q 044247 222 GNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKS-TLQNL 300 (333)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L 300 (333)
+... +..+++|++|+++++. + ....|..+..+++|+.|++++|. ++.+|..+..++ +|+.|
T Consensus 489 ~~~~-----------~~~l~~L~~L~Ls~N~-l-----~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 489 SWGV-----------FDTLHRLQLLNMSHNN-L-----LFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFF 550 (606)
T ss_dssp CTTT-----------TTTCTTCCEEECCSSC-C-----SCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEE
T ss_pred Chhh-----------hcccccCCEEECCCCc-C-----CCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEE
Confidence 1111 3455566666666542 2 22234556677888888888754 667777666666 58888
Q ss_pred EEcccCh
Q 044247 301 EIWGACH 307 (333)
Q Consensus 301 ~l~~~c~ 307 (333)
++ .+++
T Consensus 551 ~l-~~N~ 556 (606)
T 3vq2_A 551 NL-TNNS 556 (606)
T ss_dssp EC-CSCC
T ss_pred Ec-cCCC
Confidence 88 7655
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=4.5e-20 Score=169.83 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=103.9
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
+.+| .++.+++|++|++++|. +..+| ++.+++|++|++++| .+..++ ++.+++|++|++++|.... .
T Consensus 55 ~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l~~----l-- 121 (457)
T 3bz5_A 55 TDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTK----L-- 121 (457)
T ss_dssp CCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCCSC----C--
T ss_pred ccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcCCe----e--
Confidence 4566 68889999999999998 65565 788899999999888 456654 7788888998888887653 1
Q ss_pred ccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCc-hhh--hc---ccCCcccccccccccCCCC
Q 044247 82 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGD-EEQ--AG---RRENEEDEDERLLDALGPP 155 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~--~~---~~~~~~~~~~~~~~~l~~~ 155 (333)
.+..+++|+.|++.... +... .+..+++|++|++++|...... ... .. ....+ ....++ +..+
T Consensus 122 ~~~~l~~L~~L~l~~N~-l~~l------~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n--~l~~l~--l~~l 190 (457)
T 3bz5_A 122 DVSQNPLLTYLNCARNT-LTEI------DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN--KITELD--VSQN 190 (457)
T ss_dssp CCTTCTTCCEEECTTSC-CSCC------CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS--CCCCCC--CTTC
T ss_pred cCCCCCcCCEEECCCCc-ccee------ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC--ccceec--cccC
Confidence 26667777777665422 1111 1344555555555555211000 000 00 00000 011111 3444
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceeccccc
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMK 216 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~ 216 (333)
++|+.|++++|.... + + +..+++|+.|++++| .++.+| ++.+++|+.|++++|.
T Consensus 191 ~~L~~L~l~~N~l~~--~-~--l~~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 191 KLLNRLNCDTNNITK--L-D--LNQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp TTCCEEECCSSCCSC--C-C--CTTCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC
T ss_pred CCCCEEECcCCcCCe--e-c--cccCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCCc
Confidence 555555555555444 2 1 344556666666665 233344 5555666666666654
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=2e-20 Score=176.43 Aligned_cols=162 Identities=19% Similarity=0.122 Sum_probs=85.0
Q ss_pred cchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccc-cccccccCceeeeEEEcCccCCCCCcccc
Q 044247 5 PETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVCGGYDRACSLGSL 83 (333)
Q Consensus 5 p~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 83 (333)
|..++++++|++|++++|...+..|..++.+++|++|++++| .+..++. .++.+++|++|++++|.... ...+..+
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~ 119 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQT--LGVTSLF 119 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSS--SCSSCSC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccc--cchhhhh
Confidence 345666666666666666633333455666666667776666 3333333 36666667777666665542 1233455
Q ss_pred ccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEE
Q 044247 84 KKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHI 163 (333)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 163 (333)
.++++|+.|++.....+... ....+..+++|++|++++|.+. ...+..+..+++|+.|++
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~L~~n~l~-----------------~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEI---RRIDFAGLTSLNELEIKALSLR-----------------NYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEE---CTTTTTTCCEEEEEEEEETTCC-----------------EECTTTTTTCSEEEEEEE
T ss_pred hccCCccEEECCCCcccccc---CHhhhhcccccCeeeccCCccc-----------------ccChhhhhccccCceEec
Confidence 66666666666543211111 0124556667777777776532 223344444555555555
Q ss_pred eeecCCCCccCchhh-hcCCCccEEEeecC
Q 044247 164 HEYRGRRNVVPKNWV-MSLTNLRVLHLFEC 192 (333)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 192 (333)
+++.... + +.++ ..+++|++|++++|
T Consensus 180 ~~n~~~~--~-~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 180 HLSESAF--L-LEIFADILSSVRYLELRDT 206 (549)
T ss_dssp ECSBSTT--H-HHHHHHSTTTBSEEEEESC
T ss_pred ccCcccc--c-chhhHhhcccccEEEccCC
Confidence 5444333 3 3222 23555555555554
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=7.1e-20 Score=173.31 Aligned_cols=84 Identities=18% Similarity=0.047 Sum_probs=33.9
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccc-cccccccCceeeeEEEcCccCCCCCccccccC
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVCGGYDRACSLGSLKKL 86 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l 86 (333)
++++++|++|++++|......|..++++++|++|++++| .+..++. .++.+++|++|++++|.... ...+..+.++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~lp~~~~~l 148 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNL 148 (570)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCC--CCCCGGGGGC
T ss_pred ccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccce--ecChhhhccc
Confidence 344444444444444411122233444444444444443 2222222 24444455555554444331 1123444555
Q ss_pred ccCceeEe
Q 044247 87 NLLRQCSI 94 (333)
Q Consensus 87 ~~L~~L~l 94 (333)
++|+.|++
T Consensus 149 ~~L~~L~l 156 (570)
T 2z63_A 149 TNLEHLDL 156 (570)
T ss_dssp TTCCEEEC
T ss_pred CCCCEEeC
Confidence 55555444
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=4.2e-19 Score=175.48 Aligned_cols=118 Identities=13% Similarity=0.084 Sum_probs=76.8
Q ss_pred cchhcCCCcccEEeecCCCccccc-CccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc--
Q 044247 5 PETLCELYNLERVNVSGCSHLREL-PQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG-- 81 (333)
Q Consensus 5 p~~l~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~-- 81 (333)
|..+.++++|++|++++|.....+ |..++++++|++|++++|......|..++.+++|++|++++|.... ..+.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~---~~~~~~ 117 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD---AVLKDG 117 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS---CCSTTC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc---ccccCc
Confidence 567778888888888888645555 6667888888888888874433346677788888888887776542 2222
Q ss_pred ccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCC
Q 044247 82 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLR 128 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 128 (333)
.+.++++|+.|++....-... .....+..+++|++|++++|.+.
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRSL---YLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCCC---CCCGGGGTCSSCCEEEEESSCCC
T ss_pred cccccCCCCEEECCCCccccc---ccchhHhhCCCCCEEECCCCcCC
Confidence 266777777776654321110 00124667777777777777654
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=2.1e-20 Score=163.23 Aligned_cols=136 Identities=17% Similarity=0.130 Sum_probs=75.5
Q ss_pred cCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCC-CCCC-CCCCccccceecccccccccccccccCC
Q 044247 151 ALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCE-HLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGV 228 (333)
Q Consensus 151 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 228 (333)
.+..+++|+.|++++|.... ..+..+..+++|+.|++++|...+ .+|. ++.+++|++|++++|. ++.++...
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~--- 194 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA--- 194 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEE--CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT---
T ss_pred hhhhccCCCEEECCCCcCCc--cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHH---
Confidence 45556666666666665543 214445566677777776663322 1332 5666677777777665 44432211
Q ss_pred CCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCC-CcceEEEcccCh
Q 044247 229 ESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKS-TLQNLEIWGACH 307 (333)
Q Consensus 229 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~~c~ 307 (333)
+..+++|++|+++++. +..++ +..+..+++|+.|++++|......+..+..++ +|+.|++ .+++
T Consensus 195 --------~~~l~~L~~L~L~~N~-l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L-~~N~ 259 (306)
T 2z66_A 195 --------FNSLSSLQVLNMSHNN-FFSLD-----TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL-TQND 259 (306)
T ss_dssp --------TTTCTTCCEEECTTSC-CSBCC-----SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC-TTCC
T ss_pred --------hcCCCCCCEEECCCCc-cCccC-----hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc-cCCC
Confidence 3456677777776642 32221 11234567777777776554444455555553 6777777 6543
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=5.5e-20 Score=174.08 Aligned_cols=252 Identities=17% Similarity=0.142 Sum_probs=187.9
Q ss_pred ccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcccc
Q 044247 4 LPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSL 83 (333)
Q Consensus 4 lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 83 (333)
+|..+..+++|++|++.+|. +..+|..+..+ +|++|++++| .+..+|. ..+++|++|++.++.... ... .
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~--~~l~~L~~L~l~~n~~~~----~~~-~ 343 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNC-KFGQFPT--LKLKSLKRLTFTSNKGGN----AFS-E 343 (570)
T ss_dssp STTTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESC-BCSSCCB--CBCSSCCEEEEESCBSCC----BCC-C
T ss_pred chhhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccC-cccccCc--ccccccCEEeCcCCcccc----ccc-c
Confidence 46678889999999999998 77888888888 9999999998 5567765 578899999998887653 111 1
Q ss_pred ccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEE
Q 044247 84 KKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHI 163 (333)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 163 (333)
..+++|+.|++....- ... ......+..+++|++|++++|. ....+..+..+++|+.|++
T Consensus 344 ~~~~~L~~L~l~~n~l-~~~-~~~~~~~~~~~~L~~L~l~~n~------------------l~~~~~~~~~l~~L~~L~l 403 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGL-SFK-GCCSQSDFGTTSLKYLDLSFNG------------------VITMSSNFLGLEQLEHLDF 403 (570)
T ss_dssp CBCTTCCEEECCSSCC-BEE-EEEEHHHHTCSCCCEEECCSCS------------------EEEEEEEEETCTTCCEEEC
T ss_pred ccCCCCCEEeCcCCcc-Ccc-ccccccccccCccCEEECCCCc------------------cccccccccccCCCCEEEc
Confidence 6788888888865432 111 0012356678999999999984 3344444778899999999
Q ss_pred eeecCCCCccCc-hhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceeccccccc-ccccccccCCCCCCCCCccccC
Q 044247 164 HEYRGRRNVVPK-NWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSV-KRVGNEFLGVESDTDGSSVIAF 240 (333)
Q Consensus 164 ~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l-~~i~~~~~~~~~~~~~~~~~~l 240 (333)
++|.... ..+ ..+..+++|+.|++++|......+. ++.+++|++|++++|... ..+|.. +..+
T Consensus 404 ~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~------------~~~l 469 (570)
T 2z63_A 404 QHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI------------FTEL 469 (570)
T ss_dssp TTSEEES--CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC------------CTTC
T ss_pred cCCcccc--ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh------------hhcc
Confidence 9887655 312 4577899999999999965554554 788999999999999832 234433 6789
Q ss_pred CCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCC-cccCCCCCcceEEEcccCh
Q 044247 241 PKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALP-DHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 241 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~c~ 307 (333)
++|++|++++|. +. +..|..+..+++|++|++++|. ++.++ ..+..+++|+.|++ .+|+
T Consensus 470 ~~L~~L~l~~n~-l~-----~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~N~ 529 (570)
T 2z63_A 470 RNLTFLDLSQCQ-LE-----QLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWL-HTNP 529 (570)
T ss_dssp TTCCEEECTTSC-CC-----EECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC-CSSC
T ss_pred cCCCEEECCCCc-cc-----cCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEe-cCCc
Confidence 999999999974 33 2334556689999999999974 55554 46778999999999 8754
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=5.1e-19 Score=165.70 Aligned_cols=135 Identities=16% Similarity=0.225 Sum_probs=87.4
Q ss_pred ccccCCCCCCccEEEEeeecCCCC-ccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceeccccccccccccc
Q 044247 148 LLDALGPPPNLKELHIHEYRGRRN-VVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNE 224 (333)
Q Consensus 148 ~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~ 224 (333)
.+..+..+++|+.|++++|..... .+ |..+..+++|+.|++++|...+.+|. +..+++|++|++++|.-...++
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-- 416 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKI-AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-- 416 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHH-HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG--
T ss_pred hhhhhccCCCCCEEEccCCccCccccc-hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh--
Confidence 345556667777777776665530 02 34455677777777777643332443 5566677777777766222222
Q ss_pred ccCCCCCCCCCccccC-CCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcc-cCCCCCcceEEE
Q 044247 225 FLGVESDTDGSSVIAF-PKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDH-LLQKSTLQNLEI 302 (333)
Q Consensus 225 ~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l 302 (333)
..+ ++|+.|++++| +++ .+|..+..+++|++|++++| .++.+|.. +..+++|+.|++
T Consensus 417 -------------~~l~~~L~~L~Ls~N-~l~------~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 417 -------------RCLPPRIKVLDLHSN-KIK------SIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp -------------GSCCTTCCEEECCSS-CCC------CCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred -------------hhhcccCCEEECCCC-ccc------ccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEEC
Confidence 122 57888888875 333 35566668999999999986 56788875 778999999999
Q ss_pred cccCh
Q 044247 303 WGACH 307 (333)
Q Consensus 303 ~~~c~ 307 (333)
.+++
T Consensus 476 -~~N~ 479 (520)
T 2z7x_B 476 -HTNP 479 (520)
T ss_dssp -CSSC
T ss_pred -cCCC
Confidence 8754
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=5e-19 Score=166.78 Aligned_cols=139 Identities=18% Similarity=0.235 Sum_probs=89.0
Q ss_pred CCCCCCccEEEEeeecCCCCccCc---hhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccC
Q 044247 152 LGPPPNLKELHIHEYRGRRNVVPK---NWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLG 227 (333)
Q Consensus 152 l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~ 227 (333)
+..+++|+.|++++|.... + + ..+..+++|+.|++++| .++.+|. ++.+++|++|++++|. ++.++.....
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~--~-~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~ 431 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRS--M-QKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQ 431 (549)
T ss_dssp TTSSTTCCEEECTTSCCCC--H-HHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCT
T ss_pred hhccccCcEEEccCCcccc--c-ccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccchhcC
Confidence 4556777777777776655 4 3 23567888888888888 4456665 6677888888888877 5544432110
Q ss_pred CCCCCC--------CCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCC-cccCCCCCcc
Q 044247 228 VESDTD--------GSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALP-DHLLQKSTLQ 298 (333)
Q Consensus 228 ~~~~~~--------~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~ 298 (333)
..+. ......+++|++|+++++ +++.+ |. ...+++|+.|++++| .++.++ ..+..+++|+
T Consensus 432 --~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~i------p~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 432 --TLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTL------PD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp --TCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSC------CC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCC
T ss_pred --CceEEECCCCChhhhcccCChhcEEECCCC-ccCcC------CC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccC
Confidence 0000 001235677777777775 44433 33 236899999999986 455544 4577899999
Q ss_pred eEEEcccCh
Q 044247 299 NLEIWGACH 307 (333)
Q Consensus 299 ~L~l~~~c~ 307 (333)
.|++ .+|+
T Consensus 501 ~L~l-~~N~ 508 (549)
T 2z81_A 501 KIWL-HTNP 508 (549)
T ss_dssp EEEC-CSSC
T ss_pred EEEe-cCCC
Confidence 9999 7765
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=5.9e-21 Score=167.65 Aligned_cols=247 Identities=13% Similarity=0.037 Sum_probs=180.0
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLN 87 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 87 (333)
+..+++|++|++++|......|..+..+++|++|++++| .+...+. +..+++|++|++++|.... +...+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~--------l~~~~ 99 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQE--------LLVGP 99 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEE--------EEECT
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCcccc--------ccCCC
Confidence 445679999999999833444567899999999999998 4555444 8889999999998876542 22346
Q ss_pred cCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeec
Q 044247 88 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYR 167 (333)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (333)
+|+.|++....- ... ....+++|++|++++|.+. ......+..+++|+.|++++|.
T Consensus 100 ~L~~L~l~~n~l-~~~------~~~~~~~L~~L~l~~N~l~-----------------~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 100 SIETLHAANNNI-SRV------SCSRGQGKKNIYLANNKIT-----------------MLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp TCCEEECCSSCC-SEE------EECCCSSCEEEECCSSCCC-----------------SGGGBCTGGGSSEEEEECTTSC
T ss_pred CcCEEECCCCcc-CCc------CccccCCCCEEECCCCCCC-----------------CccchhhhccCCCCEEECCCCC
Confidence 788877765322 211 1234678999999998632 2223456677899999999988
Q ss_pred CCCCccCchhh-hcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEE
Q 044247 168 GRRNVVPKNWV-MSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRL 246 (333)
Q Consensus 168 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L 246 (333)
... +.+..+ ..+++|+.|++++| .++.++....+++|++|++++|. ++.++.. +..+++|++|
T Consensus 156 l~~--~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------------~~~l~~L~~L 219 (317)
T 3o53_A 156 IDT--VNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPE------------FQSAAGVTWI 219 (317)
T ss_dssp CCE--EEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSC-CCEECGG------------GGGGTTCSEE
T ss_pred CCc--ccHHHHhhccCcCCEEECCCC-cCcccccccccccCCEEECCCCc-CCcchhh------------hcccCcccEE
Confidence 776 423444 46899999999998 45666666668999999999987 6666654 4578899999
Q ss_pred eeccCccccccccCCccccccccCCCcceEecccCcCc-ccCCcccCCCCCcceEEEcccChhhHhh
Q 044247 247 RFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCREL-KALPDHLLQKSTLQNLEIWGACHILQER 312 (333)
Q Consensus 247 ~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~~c~~l~~~ 312 (333)
+++++ .+.. +|..+..+++|+.|++++++.. ..++..+..+++|+.+++ .+|..++..
T Consensus 220 ~L~~N-~l~~------l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l-~~~~~l~~~ 278 (317)
T 3o53_A 220 SLRNN-KLVL------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK-QTVKKLTGQ 278 (317)
T ss_dssp ECTTS-CCCE------ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH-HHHHHHHSS
T ss_pred ECcCC-cccc------hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC-CCchhccCC
Confidence 99986 4543 3444568899999999987655 456667777888999998 877777654
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=176.03 Aligned_cols=83 Identities=14% Similarity=-0.081 Sum_probs=40.6
Q ss_pred CCcccEEeecCCCcccccCccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCCCccccccCccC
Q 044247 11 LYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLL 89 (333)
Q Consensus 11 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L 89 (333)
.++|++|++++|......|..+.++++|++|++++|.....+ |..++.+++|++|++++|... ...+..+..+++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~---~~~p~~~~~l~~L 99 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY---FLHPDAFQGLFHL 99 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC---EECTTSSCSCSSC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc---ccCHhHccCCccc
Confidence 345555555555522333444555555555555555333333 334555555555555555443 2223444555555
Q ss_pred ceeEecC
Q 044247 90 RQCSIDG 96 (333)
Q Consensus 90 ~~L~l~~ 96 (333)
+.|++..
T Consensus 100 ~~L~Ls~ 106 (844)
T 3j0a_A 100 FELRLYF 106 (844)
T ss_dssp CCEECTT
T ss_pred CEeeCcC
Confidence 5555543
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=8.8e-19 Score=169.35 Aligned_cols=87 Identities=17% Similarity=0.098 Sum_probs=62.2
Q ss_pred cchhcCCCcccEEeecCCCcccccCc-cccccccccEEecCCCCCccccc-ccccccccCceeeeEEEcCccCCCCCccc
Q 044247 5 PETLCELYNLERVNVSGCSHLRELPQ-GIGKLRKLMYLDNDYTDSLRYLP-VGIGELIRLRRVTKFVVCGGYDRACSLGS 82 (333)
Q Consensus 5 p~~l~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 82 (333)
|..++++++|++|++++|. +..+|. .++.+++|++|++++| .+..++ ..++.+++|++|++++|... ...+..
T Consensus 66 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~ 140 (680)
T 1ziw_A 66 PELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLS---STKLGT 140 (680)
T ss_dssp TTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCS---CCCCCS
T ss_pred HHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCccc---ccCchh
Confidence 5667888888888888887 656665 5788888888888888 445544 45778888888888877655 333445
Q ss_pred cccCccCceeEecC
Q 044247 83 LKKLNLLRQCSIDG 96 (333)
Q Consensus 83 l~~l~~L~~L~l~~ 96 (333)
+..+++|+.|++..
T Consensus 141 ~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 141 QVQLENLQELLLSN 154 (680)
T ss_dssp SSCCTTCCEEECCS
T ss_pred hcccccCCEEEccC
Confidence 56677777766654
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1e-18 Score=168.83 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=95.7
Q ss_pred CcccchhcCCCcccEEeecCCCcccccC-ccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELP-QGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
+++|..+. +++++|++++|. +..+| ..++++++|++|++++|......|..++.+++|++|++++|.... ...
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~ 90 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ---LSD 90 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC---CCT
T ss_pred cccccccC--CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc---cCh
Confidence 45666554 677788888777 44444 457777788888887774333345556777778887777776542 222
Q ss_pred cccccCccCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCc
Q 044247 81 GSLKKLNLLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNL 158 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 158 (333)
..+.++++|+.|++... ..++. ..+..+++|++|++++|.+ ....+..+..+++|
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l-----------------~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKN------NPFVKQKNLITLDLSHNGL-----------------SSTKLGTQVQLENL 147 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCS------CTTTTCTTCCEEECCSSCC-----------------SCCCCCSSSCCTTC
T ss_pred hhhccCCCCCEEECCCCccCccCh------hHccccCCCCEEECCCCcc-----------------cccCchhhcccccC
Confidence 24666777777766542 22221 2456677777777777753 22233445566677
Q ss_pred cEEEEeeecCCCCccCchhhh--cCCCccEEEeecC
Q 044247 159 KELHIHEYRGRRNVVPKNWVM--SLTNLRVLHLFEC 192 (333)
Q Consensus 159 ~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~ 192 (333)
+.|++++|.... +.+..+. .+++|+.|++++|
T Consensus 148 ~~L~L~~n~l~~--~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 148 QELLLSNNKIQA--LKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CEEECCSSCCCC--BCHHHHGGGTTCEESEEECTTC
T ss_pred CEEEccCCcccc--cCHHHhhccccccccEEECCCC
Confidence 777776665544 3133332 3466666666666
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=2.9e-20 Score=172.51 Aligned_cols=243 Identities=14% Similarity=0.053 Sum_probs=173.3
Q ss_pred cccchhcCCC----cccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCC
Q 044247 3 KLPETLCELY----NLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRAC 78 (333)
Q Consensus 3 ~lp~~l~~l~----~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~ 78 (333)
.+|..+..+. +|++|++++|......|..++.+++|++|++++| .+...+. ++.+++|++|++++|....
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~---- 94 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQE---- 94 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEE----
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCC----
Confidence 3555555554 8999999999844455678999999999999999 4554444 8899999999998876543
Q ss_pred CccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCc
Q 044247 79 SLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNL 158 (333)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 158 (333)
+...++|+.|++....- ... ....+++|++|++++|.+. ...+..+..+++|
T Consensus 95 ----l~~~~~L~~L~L~~N~l-~~~------~~~~l~~L~~L~L~~N~l~-----------------~~~~~~~~~l~~L 146 (487)
T 3oja_A 95 ----LLVGPSIETLHAANNNI-SRV------SCSRGQGKKNIYLANNKIT-----------------MLRDLDEGCRSRV 146 (487)
T ss_dssp ----EEECTTCCEEECCSSCC-CCE------EECCCSSCEEEECCSSCCC-----------------SGGGBCGGGGSSE
T ss_pred ----CCCCCCcCEEECcCCcC-CCC------CccccCCCCEEECCCCCCC-----------------CCCchhhcCCCCC
Confidence 22336778877765322 221 1224578999999988632 2334456677899
Q ss_pred cEEEEeeecCCCCccCchhhh-cCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCcc
Q 044247 159 KELHIHEYRGRRNVVPKNWVM-SLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSV 237 (333)
Q Consensus 159 ~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~ 237 (333)
+.|++++|.... ..+..+. .+++|+.|++++| .+..++....+++|+.|++++|. +..++.. +
T Consensus 147 ~~L~Ls~N~l~~--~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~------------~ 210 (487)
T 3oja_A 147 QYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPE------------F 210 (487)
T ss_dssp EEEECTTSCCCE--EEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSC-CCEECGG------------G
T ss_pred CEEECCCCCCCC--cChHHHhhhCCcccEEecCCC-ccccccccccCCCCCEEECCCCC-CCCCCHh------------H
Confidence 999999887765 3255554 6899999999998 45556666678899999999987 6666554 4
Q ss_pred ccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCc-ccCCcccCCCCCcceEEE
Q 044247 238 IAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCREL-KALPDHLLQKSTLQNLEI 302 (333)
Q Consensus 238 ~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l 302 (333)
..+++|+.|+++++ .+.. +|..+..+++|+.|++++|+.. ..+|..+..++.|+.+++
T Consensus 211 ~~l~~L~~L~Ls~N-~l~~------lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 211 QSAAGVTWISLRNN-KLVL------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGGTTCSEEECTTS-CCCE------ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCccEEEecCC-cCcc------cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 57889999999985 4443 4455667889999999887654 355555666777777766
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=3.6e-19 Score=155.39 Aligned_cols=234 Identities=17% Similarity=0.178 Sum_probs=174.7
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCcc-ccccccccEEecCCCCCcccc---cccccccccCceeeeEEEcCccCC
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQG-IGKLRKLMYLDNDYTDSLRYL---PVGIGELIRLRRVTKFVVCGGYDR 76 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~---p~~i~~l~~L~~L~l~~~~~~~~~ 76 (333)
++.+|..+. ++|++|++++|. +..+|.. +..+++|++|++++| .+..+ +..+..+++|++|++++|....
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-- 92 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-- 92 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEE--
T ss_pred cccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCcccc--
Confidence 356777554 689999999998 7677765 689999999999998 44443 4556788999999999887654
Q ss_pred CCCccccccCccCceeEecCCC--CCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCC
Q 044247 77 ACSLGSLKKLNLLRQCSIDGLG--GVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGP 154 (333)
Q Consensus 77 ~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 154 (333)
.+..+..+++|+.|++.... .++. ...+..+++|++|++++|. .....+..+..
T Consensus 93 --l~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~-----------------l~~~~~~~~~~ 148 (306)
T 2z66_A 93 --MSSNFLGLEQLEHLDFQHSNLKQMSE-----FSVFLSLRNLIYLDISHTH-----------------TRVAFNGIFNG 148 (306)
T ss_dssp --EEEEEETCTTCCEEECTTSEEESSTT-----TTTTTTCTTCCEEECTTSC-----------------CEECSTTTTTT
T ss_pred --ChhhcCCCCCCCEEECCCCccccccc-----chhhhhccCCCEEECCCCc-----------------CCccchhhccc
Confidence 55668889999998886532 2211 1256778999999999985 33344566788
Q ss_pred CCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCC
Q 044247 155 PPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTD 233 (333)
Q Consensus 155 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 233 (333)
+++|+.|++++|......+ +..+..+++|+.|++++|...+..+. ++.+++|+.|++++|. ++.++...
T Consensus 149 l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-------- 218 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFP-------- 218 (306)
T ss_dssp CTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGG--------
T ss_pred CcCCCEEECCCCccccccc-hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhh--------
Confidence 8999999999887653124 67788899999999999944333333 7889999999999998 55554322
Q ss_pred CCccccCCCccEEeeccCccccccccCCccccccccCC-CcceEecccCcC
Q 044247 234 GSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMP-RLSSLSIQSCRE 283 (333)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~ 283 (333)
+..+++|+.|+++++. +. +..+..+..++ +|++|++++++.
T Consensus 219 ---~~~l~~L~~L~L~~N~-l~-----~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 219 ---YKCLNSLQVLDYSLNH-IM-----TSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ---GTTCTTCCEEECTTSC-CC-----BCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ---ccCcccCCEeECCCCC-Cc-----ccCHHHHHhhhccCCEEEccCCCe
Confidence 5678999999999974 32 33334455675 999999998653
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=1.8e-18 Score=163.57 Aligned_cols=116 Identities=17% Similarity=0.021 Sum_probs=87.5
Q ss_pred CCcccchhcCCCcccEEeecCCCccccc-CccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCC
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLREL-PQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRAC 78 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~ 78 (333)
++.+|..+. ++|++|++++|. +..+ |..+..+++|++|++++| .+..+ |..++.+++|++|++++|....
T Consensus 43 L~~ip~~~~--~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---- 114 (562)
T 3a79_B 43 LTHVPKDLP--PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQN---- 114 (562)
T ss_dssp CCSCCTTSC--TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCE----
T ss_pred CccCCCCCC--CCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCc----
Confidence 456787665 899999999999 5554 468999999999999999 55555 6678999999999999988764
Q ss_pred CccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCC
Q 044247 79 SLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRD 129 (333)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 129 (333)
.+.. .+++|+.|++....- ... .....+..+++|++|++++|.+..
T Consensus 115 lp~~--~l~~L~~L~Ls~N~l-~~l--~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 115 ISCC--PMASLRHLDLSFNDF-DVL--PVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp ECSC--CCTTCSEEECCSSCC-SBC--CCCGGGGGCTTCCEEEEECSBCCT
T ss_pred cCcc--ccccCCEEECCCCCc-ccc--CchHhhcccCcccEEecCCCcccc
Confidence 3333 788899988865332 110 011357788999999999987654
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.2e-18 Score=148.89 Aligned_cols=178 Identities=20% Similarity=0.173 Sum_probs=86.0
Q ss_pred CcccEEeecCCCcccccC-ccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCCCccccccCccC
Q 044247 12 YNLERVNVSGCSHLRELP-QGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLL 89 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L 89 (333)
++|++|++++|. +..++ ..+..+++|++|++++| .+..+ |..++.+++|++|++++|.... ...+..+..+++|
T Consensus 32 ~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~--~~~~~~~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLR--SVDPATFHGLGRL 107 (285)
T ss_dssp TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCC--CCCTTTTTTCTTC
T ss_pred CCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCcc--ccCHHHhcCCcCC
Confidence 466666666666 33333 34566666666666666 33333 4456666666666666654221 2223344555555
Q ss_pred ceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCC
Q 044247 90 RQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGR 169 (333)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 169 (333)
+.|++....- ... ....+..+++|++|++++|.+. ......+..+++|+.|++++|...
T Consensus 108 ~~L~l~~n~l-~~~---~~~~~~~l~~L~~L~l~~n~l~-----------------~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 108 HTLHLDRCGL-QEL---GPGLFRGLAALQYLYLQDNALQ-----------------ALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CEEECTTSCC-CCC---CTTTTTTCTTCCEEECCSSCCC-----------------CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcC-CEE---CHhHhhCCcCCCEEECCCCccc-----------------ccCHhHhccCCCccEEECCCCccc
Confidence 5555543211 000 0123444555555555555321 111223445555555555555544
Q ss_pred CCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceeccccc
Q 044247 170 RNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 170 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~ 216 (333)
. +++..+..+++|+.|++++|...+..+. ++.+++|+.|++++|.
T Consensus 167 ~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 167 S--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp E--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred c--cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 4 3122344555555555555532222222 4455555555555554
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=154.17 Aligned_cols=235 Identities=14% Similarity=0.078 Sum_probs=171.6
Q ss_pred Ccccc-hhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCccccccc-ccccccCceeeeEEEcCccCCCCC
Q 044247 2 EKLPE-TLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFVVCGGYDRACS 79 (333)
Q Consensus 2 ~~lp~-~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~ 79 (333)
+.+|. .+.++++|++|++++|...+..|..++++++|++|++++| .+..+|.. ++.+++|++|++++|.... .
T Consensus 65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~----l 139 (353)
T 2z80_A 65 TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKT----L 139 (353)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSS----S
T ss_pred cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcc----c
Confidence 45665 7899999999999999844445667999999999999999 56677665 7899999999999987763 2
Q ss_pred c--cccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCC
Q 044247 80 L--GSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPN 157 (333)
Q Consensus 80 ~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (333)
+ ..+..+++|+.|++.....+... ....+..+++|++|++++|. .....+..+..+++
T Consensus 140 ~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~-----------------l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 140 GETSLFSHLTKLQILRVGNMDTFTKI---QRKDFAGLTFLEELEIDASD-----------------LQSYEPKSLKSIQN 199 (353)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCEE---CTTTTTTCCEEEEEEEEETT-----------------CCEECTTTTTTCSE
T ss_pred CchhhhccCCCCcEEECCCCcccccc---CHHHccCCCCCCEEECCCCC-----------------cCccCHHHHhcccc
Confidence 2 35778899999888764322211 11357788999999999995 33344677888999
Q ss_pred ccEEEEeeecCCCCccCchh-hhcCCCccEEEeecCCCCCCCCC-----CCCCccccceecccccc----cccccccccC
Q 044247 158 LKELHIHEYRGRRNVVPKNW-VMSLTNLRVLHLFECRNCEHLPP-----LGKLTSLEDLYIAGMKS----VKRVGNEFLG 227 (333)
Q Consensus 158 L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~-----~~~l~~L~~L~l~~~~~----l~~i~~~~~~ 227 (333)
|+.|++++|.... + +.. +..+++|+.|++++|. +..++. ....+.++.++++++.- +..++..
T Consensus 200 L~~L~l~~n~l~~--~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~--- 272 (353)
T 2z80_A 200 VSHLILHMKQHIL--L-LEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL--- 272 (353)
T ss_dssp EEEEEEECSCSTT--H-HHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH---
T ss_pred CCeecCCCCcccc--c-hhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHH---
Confidence 9999999998766 6 544 4469999999999994 333321 33455677777776651 1223322
Q ss_pred CCCCCCCCccccCCCccEEeeccCccccccccCCccccc-cccCCCcceEecccCcCc
Q 044247 228 VESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGE-IIIMPRLSSLSIQSCREL 284 (333)
Q Consensus 228 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l 284 (333)
+..+++|++|+++++ +++.++ .. +..+++|++|++++|+..
T Consensus 273 ---------l~~l~~L~~L~Ls~N-~l~~i~------~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 273 ---------LNQISGLLELEFSRN-QLKSVP------DGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ---------HHTCTTCCEEECCSS-CCCCCC------TTTTTTCTTCCEEECCSSCBC
T ss_pred ---------HhcccCCCEEECCCC-CCCccC------HHHHhcCCCCCEEEeeCCCcc
Confidence 568899999999996 454333 33 357899999999997543
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=157.08 Aligned_cols=229 Identities=14% Similarity=0.140 Sum_probs=144.7
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCccccc-ccccccccCceeeeEEEcCccCCCCCc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLP-VGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
+.+|..+. +++++|++++|......+..+.++++|++|++++| .+..++ ..+..+++|++|++++|.... ...
T Consensus 56 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~ 129 (440)
T 3zyj_A 56 REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTT---IPN 129 (440)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSS---CCT
T ss_pred CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCe---eCH
Confidence 45676554 57788888888733344466778888888888887 444443 457778888888888776652 223
Q ss_pred cccccCccCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccc-cccCCCCCC
Q 044247 81 GSLKKLNLLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERL-LDALGPPPN 157 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 157 (333)
..+..+++|+.|++... ..++. ..+..+++|++|++++++ ....+ ...+..+++
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L~~L~l~~~~-----------------~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPS------YAFNRIPSLRRLDLGELK-----------------RLSYISEGAFEGLSN 186 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECT------TTTTTCTTCCEEECCCCT-----------------TCCEECTTTTTTCSS
T ss_pred hHhhccccCceeeCCCCcccccCH------HHhhhCcccCEeCCCCCC-----------------CcceeCcchhhcccc
Confidence 34666777777776542 22221 345667788888887753 22222 235666777
Q ss_pred ccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCC-CC-CCCCccccceecccccccccccccccCCCCCCCCC
Q 044247 158 LKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHL-PP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGS 235 (333)
Q Consensus 158 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 235 (333)
|+.|++++|.... + | .+..+++|+.|++++|. +..+ +. +..+++|+.|++++|. ++.++...
T Consensus 187 L~~L~L~~n~l~~--~-~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---------- 250 (440)
T 3zyj_A 187 LRYLNLAMCNLRE--I-P-NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNA---------- 250 (440)
T ss_dssp CCEEECTTSCCSS--C-C-CCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTS----------
T ss_pred cCeecCCCCcCcc--c-c-ccCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCc-eeEEChhh----------
Confidence 8888887777666 5 4 35567778888887773 3333 22 6677777888877776 55443322
Q ss_pred ccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCc
Q 044247 236 SVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCR 282 (333)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 282 (333)
+..+++|++|+++++ +++.++... +..+++|+.|++++++
T Consensus 251 -~~~l~~L~~L~L~~N-~l~~~~~~~-----~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 -FDNLQSLVEINLAHN-NLTLLPHDL-----FTPLHHLERIHLHHNP 290 (440)
T ss_dssp -STTCTTCCEEECTTS-CCCCCCTTT-----TSSCTTCCEEECCSSC
T ss_pred -hcCCCCCCEEECCCC-CCCccChhH-----hccccCCCEEEcCCCC
Confidence 456777777777774 565555322 1246777777777644
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=3.7e-18 Score=157.09 Aligned_cols=230 Identities=17% Similarity=0.144 Sum_probs=125.9
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCCCc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
+.+|..+. +++++|++++|......|..+.++++|++|++++| .+..+ +..+..+++|++|++++|.... ...
T Consensus 67 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~ 140 (452)
T 3zyi_A 67 SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTV---IPS 140 (452)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSB---CCT
T ss_pred CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCc---cCh
Confidence 44555443 56777777777633344556777777777777777 33443 3456677777777777766542 222
Q ss_pred cccccCccCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCccccccccc-ccCCCCCC
Q 044247 81 GSLKKLNLLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLL-DALGPPPN 157 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 157 (333)
..+..+++|+.|++... ..++. ..+..+++|++|++++++ ....+. ..+..+++
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~~~-----------------~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPS------YAFNRVPSLMRLDLGELK-----------------KLEYISEGAFEGLFN 197 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECT------TTTTTCTTCCEEECCCCT-----------------TCCEECTTTTTTCTT
T ss_pred hhhcccCCCCEEECCCCCcceeCH------hHHhcCCcccEEeCCCCC-----------------CccccChhhccCCCC
Confidence 33556666666666432 11211 245556677777776642 122222 24555666
Q ss_pred ccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCc
Q 044247 158 LKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSS 236 (333)
Q Consensus 158 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 236 (333)
|+.|++++|.... + + .+..+++|+.|++++|...+..+. +..+++|+.|++++|. +..++...
T Consensus 198 L~~L~L~~n~l~~--~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----------- 261 (452)
T 3zyi_A 198 LKYLNLGMCNIKD--M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNA----------- 261 (452)
T ss_dssp CCEEECTTSCCSS--C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTT-----------
T ss_pred CCEEECCCCcccc--c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHH-----------
Confidence 6666666666555 4 3 244566666666666632222222 5566666666666665 43333221
Q ss_pred cccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCc
Q 044247 237 VIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCR 282 (333)
Q Consensus 237 ~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 282 (333)
+..+++|+.|+++++ ++..++... +..+++|+.|++++++
T Consensus 262 ~~~l~~L~~L~L~~N-~l~~~~~~~-----~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 FDGLASLVELNLAHN-NLSSLPHDL-----FTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTS-----STTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCC-cCCccChHH-----hccccCCCEEEccCCC
Confidence 345566666666664 454444221 1145666666666543
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.3e-17 Score=143.97 Aligned_cols=172 Identities=17% Similarity=0.147 Sum_probs=97.6
Q ss_pred cEEeecCCCcccccCccccccccccEEecCCCCCccccc-ccccccccCceeeeEEEcCccCCCCCccccccCccCceeE
Q 044247 15 ERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLP-VGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCS 93 (333)
Q Consensus 15 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 93 (333)
++++.+++. +..+|..+ .++|++|++++| .+..++ ..++.+++|++|++.+|.... ..+..+..+++|+.|+
T Consensus 14 ~~~~c~~~~-l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQG-LQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLAR---IDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSC-CSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCC-cccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccce---eCHhhcCCccCCCEEe
Confidence 567777776 77788644 578999999998 555555 458889999999998776542 2244455566666666
Q ss_pred ecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCcc
Q 044247 94 IDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVV 173 (333)
Q Consensus 94 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 173 (333)
+.....+... ....+..+++|++|++++|.+ ....+..+..+++|+.|++++|.... +
T Consensus 87 l~~n~~l~~~---~~~~~~~l~~L~~L~l~~n~l-----------------~~~~~~~~~~l~~L~~L~l~~n~l~~--~ 144 (285)
T 1ozn_A 87 LSDNAQLRSV---DPATFHGLGRLHTLHLDRCGL-----------------QELGPGLFRGLAALQYLYLQDNALQA--L 144 (285)
T ss_dssp CCSCTTCCCC---CTTTTTTCTTCCEEECTTSCC-----------------CCCCTTTTTTCTTCCEEECCSSCCCC--C
T ss_pred CCCCCCcccc---CHHHhcCCcCCCEEECCCCcC-----------------CEECHhHhhCCcCCCEEECCCCcccc--c
Confidence 6543211111 012344555666666665532 11223344455556666665555444 3
Q ss_pred CchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceeccccc
Q 044247 174 PKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 174 ~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~ 216 (333)
++..+..+++|+.|++++| .++.++. ++.+++|++|++++|.
T Consensus 145 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc
Confidence 1233445555666666555 2333332 4455555555555554
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1.9e-18 Score=158.81 Aligned_cols=243 Identities=18% Similarity=0.179 Sum_probs=127.7
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccc-------------cEEecCCCCCcccccccccccccCceeeeE
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKL-------------MYLDNDYTDSLRYLPVGIGELIRLRRVTKF 68 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L-------------~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 68 (333)
..+|.+++++++|++|++++|...+.+|..++.+++| ++|++++| .+..+|.. .++|++|+++
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~---~~~L~~L~l~ 99 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL---PPHLESLVAS 99 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC---CTTCSEEECC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC---cCCCCEEEcc
Confidence 4577778888888888888777556777777777664 77777777 45555542 3567777777
Q ss_pred EEcCccCCCCCccccccCccCceeEecCCCCCCChhhHHHHhhccc-CCccceEEeecCCCCCchhhhcccCCccccccc
Q 044247 69 VVCGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKK-KNLFDLELDFDNLRDGDEEQAGRRENEEDEDER 147 (333)
Q Consensus 69 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (333)
+|.... .+.. +++|+.|++.... +.. +... ++|++|++++|.+ ..
T Consensus 100 ~n~l~~----lp~~---~~~L~~L~l~~n~-l~~--------l~~~~~~L~~L~L~~n~l------------------~~ 145 (454)
T 1jl5_A 100 CNSLTE----LPEL---PQSLKSLLVDNNN-LKA--------LSDLPPLLEYLGVSNNQL------------------EK 145 (454)
T ss_dssp SSCCSS----CCCC---CTTCCEEECCSSC-CSC--------CCSCCTTCCEEECCSSCC------------------SS
T ss_pred CCcCCc----cccc---cCCCcEEECCCCc-cCc--------ccCCCCCCCEEECcCCCC------------------CC
Confidence 666543 2221 2456665554321 111 1111 4677777777742 22
Q ss_pred ccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceeccccccccccccccc-
Q 044247 148 LLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFL- 226 (333)
Q Consensus 148 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~- 226 (333)
++ .+..+++|++|++++|.... + |.. +++|++|++++| .++.+|.++.+++|++|++++|. ++.++....
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~--l-p~~---~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~ 216 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK--L-PDL---PPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LKKLPDLPLS 216 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC--C-CCC---CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTT
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc--c-CCC---cccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CCcCCCCcCc
Confidence 33 46677777777777776655 5 432 357777777777 44446666777777777777765 333322100
Q ss_pred ------CCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceE
Q 044247 227 ------GVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNL 300 (333)
Q Consensus 227 ------~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 300 (333)
.....+..+.+..+++|++|+++++ .++.++ . .+++|++|++++| .++.+|.. +++|+.|
T Consensus 217 L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~l~------~---~~~~L~~L~l~~N-~l~~l~~~---~~~L~~L 282 (454)
T 1jl5_A 217 LESIVAGNNILEELPELQNLPFLTTIYADNN-LLKTLP------D---LPPSLEALNVRDN-YLTDLPEL---PQSLTFL 282 (454)
T ss_dssp CCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSSCC------S---CCTTCCEEECCSS-CCSCCCCC---CTTCCEE
T ss_pred ccEEECcCCcCCcccccCCCCCCCEEECCCC-cCCccc------c---cccccCEEECCCC-cccccCcc---cCcCCEE
Confidence 0000000111345555666665553 222221 1 2356666666654 34444432 3566666
Q ss_pred EEcccC
Q 044247 301 EIWGAC 306 (333)
Q Consensus 301 ~l~~~c 306 (333)
++ ++|
T Consensus 283 ~l-s~N 287 (454)
T 1jl5_A 283 DV-SEN 287 (454)
T ss_dssp EC-CSS
T ss_pred EC-cCC
Confidence 66 554
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=2.6e-17 Score=156.20 Aligned_cols=239 Identities=19% Similarity=0.175 Sum_probs=146.1
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCc
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
++.+|..+. ++|++|++++|. +..+|. .+++|++|++++| .+..+|. .+++|++|++++|.... .+
T Consensus 52 L~~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~----l~ 117 (622)
T 3g06_A 52 LTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPLTH----LP 117 (622)
T ss_dssp CSCCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCCCC----CC
T ss_pred cCccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcCCC----CC
Confidence 356677665 788888888887 667776 5678888888888 5666665 56788888888776653 22
Q ss_pred cccccCccCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchh-hhc--c-cCCcccccccccccCCC
Q 044247 81 GSLKKLNLLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEE-QAG--R-RENEEDEDERLLDALGP 154 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~~l~~ 154 (333)
. .+++|+.|++... ..++. .+++|++|++++|.+...... ... + ..++ ....++ ..
T Consensus 118 ~---~l~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N--~l~~l~---~~ 179 (622)
T 3g06_A 118 A---LPSGLCKLWIFGNQLTSLPV----------LPPGLQELSVSDNQLASLPALPSELCKLWAYNN--QLTSLP---ML 179 (622)
T ss_dssp C---CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS--CCSCCC---CC
T ss_pred C---CCCCcCEEECCCCCCCcCCC----------CCCCCCEEECcCCcCCCcCCccCCCCEEECCCC--CCCCCc---cc
Confidence 2 3455666655432 22221 236777888877754321000 000 0 0000 001111 22
Q ss_pred CCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCC
Q 044247 155 PPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDG 234 (333)
Q Consensus 155 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 234 (333)
+++|+.|++++|.... + +. .+++|+.|++++| .+..+|. .+++|+.|++++|. ++.++
T Consensus 180 ~~~L~~L~Ls~N~l~~--l-~~---~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~-L~~lp------------ 237 (622)
T 3g06_A 180 PSGLQELSVSDNQLAS--L-PT---LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNR-LTSLP------------ 237 (622)
T ss_dssp CTTCCEEECCSSCCSC--C-CC---CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCC------------
T ss_pred CCCCcEEECCCCCCCC--C-CC---ccchhhEEECcCC-cccccCC--CCCCCCEEEccCCc-cCcCC------------
Confidence 3556666666655554 4 33 2456666666665 3344443 24667777777765 44443
Q ss_pred CccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccChh
Q 044247 235 SSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACHI 308 (333)
Q Consensus 235 ~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~~ 308 (333)
..+++|++|+++++ ++..++ . .+++|+.|++++| .++.+|..+..+++|+.|++ .+|+.
T Consensus 238 ---~~l~~L~~L~Ls~N-~L~~lp------~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L-~~N~l 296 (622)
T 3g06_A 238 ---VLPSELKELMVSGN-RLTSLP------M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL-EGNPL 296 (622)
T ss_dssp ---CCCTTCCEEECCSS-CCSCCC------C---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEEC-CSCCC
T ss_pred ---CCCCcCcEEECCCC-CCCcCC------c---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEe-cCCCC
Confidence 25678888888885 454433 2 4689999999985 67788988888999999999 88863
No 59
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1e-17 Score=146.32 Aligned_cols=191 Identities=16% Similarity=0.223 Sum_probs=133.4
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLN 87 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 87 (333)
...+++|++|++.+|. +..+| .+..+++|++|++++| .+..++. +..+++|++|++++|.... ...+..++
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~-----~~~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKN-----VSAIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSC-----CGGGTTCT
T ss_pred HHHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCC-----chhhcCCC
Confidence 4567888899998887 66676 4888889999999888 5666666 8888889999888887653 24577777
Q ss_pred cCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeec
Q 044247 88 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYR 167 (333)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (333)
+|+.|++.... +... ..+..+++|++|++++|.+.+ .. .+..+++|+.|++++|.
T Consensus 108 ~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~l~~------------------~~-~l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 108 SIKTLDLTSTQ-ITDV-----TPLAGLSNLQVLYLDLNQITN------------------IS-PLAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp TCCEEECTTSC-CCCC-----GGGTTCTTCCEEECCSSCCCC------------------CG-GGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCC-CCCc-----hhhcCCCCCCEEECCCCccCc------------------Cc-cccCCCCccEEEccCCc
Confidence 78887776533 2221 136677788888887775321 11 15566778888888777
Q ss_pred CCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEe
Q 044247 168 GRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLR 247 (333)
Q Consensus 168 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~ 247 (333)
... + +. +..+++|+.|++++| .+..++.+..+++|++|++++|. +..++. +..+++|+.|+
T Consensus 163 l~~--~-~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~-------------l~~l~~L~~L~ 223 (308)
T 1h6u_A 163 VSD--L-TP-LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVSP-------------LANTSNLFIVT 223 (308)
T ss_dssp CCC--C-GG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCGG-------------GTTCTTCCEEE
T ss_pred CCC--C-hh-hcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCc-cCcccc-------------ccCCCCCCEEE
Confidence 666 4 43 667788888888877 45556667777788888888776 444431 45777788888
Q ss_pred eccC
Q 044247 248 FWSM 251 (333)
Q Consensus 248 l~~~ 251 (333)
++++
T Consensus 224 l~~N 227 (308)
T 1h6u_A 224 LTNQ 227 (308)
T ss_dssp EEEE
T ss_pred ccCC
Confidence 7774
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.3e-18 Score=152.62 Aligned_cols=236 Identities=16% Similarity=0.109 Sum_probs=174.0
Q ss_pred cccEEeecCCCcccccCccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCCCccccccCccCce
Q 044247 13 NLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQ 91 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 91 (333)
.++..+++.+.........+..+++|++|++++| .+..+ |..++.+++|++|++++|.... .. .+..+++|+.
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~-~~~~l~~L~~ 84 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYE----TL-DLESLSTLRT 84 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEE----EE-EETTCTTCCE
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCc----ch-hhhhcCCCCE
Confidence 4566667766622233344456889999999999 45554 4678999999999999988753 22 3788899999
Q ss_pred eEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCC
Q 044247 92 CSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRN 171 (333)
Q Consensus 92 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 171 (333)
|++.... +. .+...++|++|++++|.+. .... ..+++|+.|++++|....
T Consensus 85 L~Ls~n~-l~--------~l~~~~~L~~L~l~~n~l~------------------~~~~--~~~~~L~~L~l~~N~l~~- 134 (317)
T 3o53_A 85 LDLNNNY-VQ--------ELLVGPSIETLHAANNNIS------------------RVSC--SRGQGKKNIYLANNKITM- 134 (317)
T ss_dssp EECCSSE-EE--------EEEECTTCCEEECCSSCCS------------------EEEE--CCCSSCEEEECCSSCCCS-
T ss_pred EECcCCc-cc--------cccCCCCcCEEECCCCccC------------------CcCc--cccCCCCEEECCCCCCCC-
Confidence 8887532 11 2334589999999999632 2211 235789999999998877
Q ss_pred ccCchhhhcCCCccEEEeecCCCCCCCC-C-C-CCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEee
Q 044247 172 VVPKNWVMSLTNLRVLHLFECRNCEHLP-P-L-GKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRF 248 (333)
Q Consensus 172 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~-~-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l 248 (333)
+.+..+..+++|+.|++++|. +..++ . + +.+++|++|++++|. ++.++. ...+++|++|++
T Consensus 135 -~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------------~~~l~~L~~L~L 198 (317)
T 3o53_A 135 -LRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------------QVVFAKLKTLDL 198 (317)
T ss_dssp -GGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------------CCCCTTCCEEEC
T ss_pred -ccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccccc-------------ccccccCCEEEC
Confidence 534467789999999999994 44433 2 3 468999999999998 665533 346899999999
Q ss_pred ccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccChhh
Q 044247 249 WSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACHIL 309 (333)
Q Consensus 249 ~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~~l 309 (333)
+++ .+..+ +..+..+++|++|++++| .++.+|..+..+++|+.|++ .+|+..
T Consensus 199 s~N-~l~~l------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l-~~N~~~ 250 (317)
T 3o53_A 199 SSN-KLAFM------GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDL-RGNGFH 250 (317)
T ss_dssp CSS-CCCEE------CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEEC-TTCCCB
T ss_pred CCC-cCCcc------hhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEc-cCCCcc
Confidence 996 44433 344668899999999995 67788888888999999999 887644
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.3e-18 Score=152.40 Aligned_cols=244 Identities=14% Similarity=0.051 Sum_probs=171.5
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcc--ccccccc-------ccccCceeeeEEEcCccCCCC
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLR--YLPVGIG-------ELIRLRRVTKFVVCGGYDRAC 78 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~i~-------~l~~L~~L~l~~~~~~~~~~~ 78 (333)
++.+++|++|++++|. + .+|..+... |+.|++++| .+. .+|..+. .+++|++|++++|... +.
T Consensus 39 ~~~~~~L~~l~l~~n~-l-~~p~~~~~~--L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~ 110 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDT-E-ADLGQFTDI--IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVT---GT 110 (312)
T ss_dssp EEEEEECTTHHHHCCT-T-CCCHHHHHH--HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB---SC
T ss_pred EccCCCceeEeecccc-c-ccHHHHHHH--Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc---ch
Confidence 4567788899999988 4 778777655 888999888 333 3454444 6899999999999876 33
Q ss_pred Ccccc--ccCccCceeEecCCCCCCChhhHHHHhhccc-----CCccceEEeecCCCCCchhhhcccCCccccccccccc
Q 044247 79 SLGSL--KKLNLLRQCSIDGLGGVSDAGEARRAELEKK-----KNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDA 151 (333)
Q Consensus 79 ~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (333)
.+..+ ..+++|+.|++....- .... ..+..+ ++|++|++++|.+ ....+..
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l-~~~~----~~~~~l~~~~~~~L~~L~L~~N~l-----------------~~~~~~~ 168 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSW-ATRD----AWLAELQQWLKPGLKVLSIAQAHS-----------------LNFSCEQ 168 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBC-SSSS----SHHHHHHTTCCTTCCEEEEESCSC-----------------CCCCTTT
T ss_pred hHHHHHHhcCCCccEEEccCCCC-cchh----HHHHHHHHhhcCCCcEEEeeCCCC-----------------ccchHHH
Confidence 44444 7888899988765321 1111 122333 8999999999963 2333467
Q ss_pred CCCCCCccEEEEeeecCCCC-ccCchhh--hcCCCccEEEeecCCCCCCCCC-----CCCCccccceeccccccccccc-
Q 044247 152 LGPPPNLKELHIHEYRGRRN-VVPKNWV--MSLTNLRVLHLFECRNCEHLPP-----LGKLTSLEDLYIAGMKSVKRVG- 222 (333)
Q Consensus 152 l~~~~~L~~L~l~~~~~~~~-~~~~~~~--~~~~~L~~L~l~~~~~~~~l~~-----~~~l~~L~~L~l~~~~~l~~i~- 222 (333)
+..+++|+.|++++|..... .+ +..+ ..+++|+.|++++| .++.++. +..+++|++|++++|. +...+
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 245 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGL-ISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAG 245 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHH-HHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCC
T ss_pred hccCCCCCEEECCCCCcCcchHH-HHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccc
Confidence 88899999999999875430 01 2233 67899999999999 4443332 3467899999999998 44432
Q ss_pred ccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEE
Q 044247 223 NEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEI 302 (333)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 302 (333)
... ...+++|++|+++++ .++. +|..+. ++|++|+++++ .++.+|. +..+++|+.|++
T Consensus 246 ~~~-----------~~~l~~L~~L~Ls~N-~l~~------ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 246 APS-----------CDWPSQLNSLNLSFT-GLKQ------VPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSL 303 (312)
T ss_dssp CSC-----------CCCCTTCCEEECTTS-CCSS------CCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEEC
T ss_pred hhh-----------hhhcCCCCEEECCCC-ccCh------hhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEec
Confidence 111 346789999999996 4443 333333 89999999984 6777777 778999999999
Q ss_pred cccCh
Q 044247 303 WGACH 307 (333)
Q Consensus 303 ~~~c~ 307 (333)
.+++
T Consensus 304 -~~N~ 307 (312)
T 1wwl_A 304 -KGNP 307 (312)
T ss_dssp -TTCT
T ss_pred -cCCC
Confidence 7765
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=2.2e-17 Score=157.87 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=78.1
Q ss_pred CCccc-chhcCCCcccEEeecCCCcccccC-ccccccccccEEecCCCCCcccccc-cccccccCceeeeEEEcCccCCC
Q 044247 1 IEKLP-ETLCELYNLERVNVSGCSHLRELP-QGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVCGGYDRA 77 (333)
Q Consensus 1 ~~~lp-~~l~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~ 77 (333)
|+++| ..+.++++|++|++++|. +..+| .++.++++|++|++++| .++.+|. .++.+++|++|++++|....
T Consensus 64 i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~--- 138 (635)
T 4g8a_A 64 LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLAS--- 138 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCC---
T ss_pred CCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCC---
Confidence 34565 368888888888888887 65554 45788888888888888 5666664 46788888888888876653
Q ss_pred CCccccccCccCceeEecCCC--CCCChhhHHHHhhcccCCccceEEeecCC
Q 044247 78 CSLGSLKKLNLLRQCSIDGLG--GVSDAGEARRAELEKKKNLFDLELDFDNL 127 (333)
Q Consensus 78 ~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 127 (333)
.....+.++++|+.|++.... .+.. ...+..+++|++|++++|.+
T Consensus 139 l~~~~~~~L~~L~~L~Ls~N~l~~~~~-----~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 139 LENFPIGHLKTLKELNVAHNLIQSFKL-----PEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp STTCCCTTCTTCCEEECCSSCCCCCCC-----CGGGGGCTTCCEEECCSSCC
T ss_pred CChhhhhcCcccCeeccccCccccCCC-----chhhccchhhhhhcccCccc
Confidence 223346677777777765422 2111 12445566777777766654
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=2.5e-17 Score=138.46 Aligned_cols=197 Identities=14% Similarity=0.097 Sum_probs=109.4
Q ss_pred cccEEeecCCCcccccCc-cccccccccEEecCCCCCcccccc-cccccccCceeeeEE-EcCccCCCCCccccccCccC
Q 044247 13 NLERVNVSGCSHLRELPQ-GIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFV-VCGGYDRACSLGSLKKLNLL 89 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~l~~L 89 (333)
+|++|++++|. +..+|. .+..+++|++|++++|..++.++. .+..+++|++|++.+ +...
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~---------------- 94 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT---------------- 94 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC----------------
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee----------------
Confidence 45555555555 333332 455555555555555532444433 345555555555554 3222
Q ss_pred ceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCcc---EEEEeee
Q 044247 90 RQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLK---ELHIHEY 166 (333)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~---~L~l~~~ 166 (333)
.++. ..+..+++|++|++++|.+ ..++. +..+++|+ .|++++|
T Consensus 95 ---------~i~~------~~f~~l~~L~~L~l~~n~l------------------~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 95 ---------YIDP------DALKELPLLKFLGIFNTGL------------------KMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp ---------EECT------TSEECCTTCCEEEEEEECC------------------CSCCC-CTTCCBCCSEEEEEEESC
T ss_pred ---------EcCH------HHhCCCCCCCEEeCCCCCC------------------ccccc-cccccccccccEEECCCC
Confidence 1111 1344566777777777742 22222 55555555 7777777
Q ss_pred -cCCCCccCchhhhcCCCcc-EEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCccccC-CC
Q 044247 167 -RGRRNVVPKNWVMSLTNLR-VLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAF-PK 242 (333)
Q Consensus 167 -~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l-~~ 242 (333)
.... +++..+..+++|+ .|++++| .++.+|. ....++|+.|++++|..++.++... +..+ ++
T Consensus 141 ~~l~~--i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~-----------~~~l~~~ 206 (239)
T 2xwt_C 141 PYMTS--IPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA-----------FGGVYSG 206 (239)
T ss_dssp TTCCE--ECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTT-----------TTTCSBC
T ss_pred cchhh--cCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH-----------hhccccC
Confidence 5554 5234466777777 8888777 3445554 2222678888888775466665433 3455 77
Q ss_pred ccEEeeccCccccccccCCccccccccCCCcceEecccCcC
Q 044247 243 LKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRE 283 (333)
Q Consensus 243 L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 283 (333)
|++|++++ ..++.++.. .|++|+.|++.++..
T Consensus 207 L~~L~l~~-N~l~~l~~~--------~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 207 PSLLDVSQ-TSVTALPSK--------GLEHLKELIARNTWT 238 (239)
T ss_dssp CSEEECTT-CCCCCCCCT--------TCTTCSEEECTTC--
T ss_pred CcEEECCC-CccccCChh--------HhccCceeeccCccC
Confidence 88888877 356655533 467888888777643
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=6.9e-18 Score=147.70 Aligned_cols=226 Identities=16% Similarity=0.097 Sum_probs=161.7
Q ss_pred ccchhcCCCcccEEeecCCCcc-cccCcccc-------ccccccEEecCCCCCcccccccc--cccccCceeeeEEEcCc
Q 044247 4 LPETLCELYNLERVNVSGCSHL-RELPQGIG-------KLRKLMYLDNDYTDSLRYLPVGI--GELIRLRRVTKFVVCGG 73 (333)
Q Consensus 4 lp~~l~~l~~L~~L~l~~~~~~-~~lp~~i~-------~l~~L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~l~~~~~~ 73 (333)
+|..+... |++|+++++... ..+|..+. .+++|++|++++|.....+|..+ +.+++|++|++++|...
T Consensus 57 ~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 134 (312)
T 1wwl_A 57 DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134 (312)
T ss_dssp CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS
T ss_pred cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc
Confidence 47666655 888888888732 35666555 78999999999985444677765 88999999999988876
Q ss_pred cCCCCCccccccC-----ccCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccc
Q 044247 74 YDRACSLGSLKKL-----NLLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDE 146 (333)
Q Consensus 74 ~~~~~~~~~l~~l-----~~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (333)
. .+..+..+ ++|+.|++... ..+.. ..+..+++|++|++++|.+.+ ..
T Consensus 135 ~----~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~---------------~~ 189 (312)
T 1wwl_A 135 T----RDAWLAELQQWLKPGLKVLSIAQAHSLNFSC------EQVRVFPALSTLDLSDNPELG---------------ER 189 (312)
T ss_dssp S----SSSHHHHHHTTCCTTCCEEEEESCSCCCCCT------TTCCCCSSCCEEECCSCTTCH---------------HH
T ss_pred c----hhHHHHHHHHhhcCCCcEEEeeCCCCccchH------HHhccCCCCCEEECCCCCcCc---------------ch
Confidence 4 24555555 78888777643 22221 357788999999999995321 01
Q ss_pred cccccC--CCCCCccEEEEeeecCCCCccCc----hhhhcCCCccEEEeecCCCCCCC--CCCCCCccccceeccccccc
Q 044247 147 RLLDAL--GPPPNLKELHIHEYRGRRNVVPK----NWVMSLTNLRVLHLFECRNCEHL--PPLGKLTSLEDLYIAGMKSV 218 (333)
Q Consensus 147 ~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~l--~~~~~l~~L~~L~l~~~~~l 218 (333)
..+..+ ..+++|+.|++++|.... + + ..+..+++|+.|++++|...+.. +.+..+++|++|++++|. +
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~--~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l 265 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMET--P-SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-L 265 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCC--H-HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-C
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcc--h-HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-c
Confidence 122233 778999999999998774 3 2 23346799999999999544433 236668999999999998 6
Q ss_pred ccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCc
Q 044247 219 KRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCR 282 (333)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 282 (333)
+.+|.. +. ++|++|+++++ +++.++. -. .+++|++|++++++
T Consensus 266 ~~ip~~------------~~--~~L~~L~Ls~N-~l~~~p~-~~------~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 266 KQVPKG------------LP--AKLSVLDLSYN-RLDRNPS-PD------ELPQVGNLSLKGNP 307 (312)
T ss_dssp SSCCSS------------CC--SEEEEEECCSS-CCCSCCC-TT------TSCEEEEEECTTCT
T ss_pred Chhhhh------------cc--CCceEEECCCC-CCCCChh-Hh------hCCCCCEEeccCCC
Confidence 666543 22 79999999985 6777753 22 68999999999854
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=2.2e-17 Score=141.85 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=55.1
Q ss_pred CcccchhcCCCcccEEeecCCCcccccC-ccccccccccEEecCCCCCccccc-ccccccccCceeeeEEEcCccCCCCC
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELP-QGIGKLRKLMYLDNDYTDSLRYLP-VGIGELIRLRRVTKFVVCGGYDRACS 79 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~ 79 (333)
..+|..+. ++|++|++++|. +..++ ..+.++++|++|++++| .+..++ ..++.+++|++|++++|.... ..
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~ 92 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQS---LA 92 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCE---EC
T ss_pred cccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCc---cC
Confidence 45666554 468888888887 54444 36777888888888887 444544 357777888888887766542 22
Q ss_pred ccccccCccCceeEec
Q 044247 80 LGSLKKLNLLRQCSID 95 (333)
Q Consensus 80 ~~~l~~l~~L~~L~l~ 95 (333)
+..+..+++|+.|.+.
T Consensus 93 ~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TTTTTTCTTCCEEECT
T ss_pred hhhhcCCccccEEECC
Confidence 2344555555555554
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1e-16 Score=138.71 Aligned_cols=198 Identities=16% Similarity=0.114 Sum_probs=147.5
Q ss_pred hhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccC
Q 044247 7 TLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKL 86 (333)
Q Consensus 7 ~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l 86 (333)
.++++++++++++.++. +..+|..+. ++++.|++++|......+..+..+++|++|++++|.... . .....+
T Consensus 5 ~~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~-~~~~~l 76 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----L-QVDGTL 76 (290)
T ss_dssp EEECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE----E-ECCSCC
T ss_pred cccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc----c-cCCCCC
Confidence 36789999999999988 888887664 789999999995433345668899999999999887653 2 222677
Q ss_pred ccCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEe
Q 044247 87 NLLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIH 164 (333)
Q Consensus 87 ~~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 164 (333)
++|+.|++... ..++. .+..+++|++|++++|.+. ...+..+..+++|+.|+++
T Consensus 77 ~~L~~L~Ls~N~l~~l~~-------~~~~l~~L~~L~l~~N~l~-----------------~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSLPL-------LGQTLPALTVLDVSFNRLT-----------------SLPLGALRGLGELQELYLK 132 (290)
T ss_dssp TTCCEEECCSSCCSSCCC-------CTTTCTTCCEEECCSSCCC-----------------CCCSSTTTTCTTCCEEECT
T ss_pred CcCCEEECCCCcCCcCch-------hhccCCCCCEEECCCCcCc-----------------ccCHHHHcCCCCCCEEECC
Confidence 78888777543 22222 4567788999999988532 2223567788899999999
Q ss_pred eecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccccCCC
Q 044247 165 EYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPK 242 (333)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~ 242 (333)
+|.... +++..+..+++|+.|++++| .++.++. +..+++|+.|++++|. ++.+|.. +..+++
T Consensus 133 ~N~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~------------~~~~~~ 196 (290)
T 1p9a_G 133 GNELKT--LPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTIPKG------------FFGSHL 196 (290)
T ss_dssp TSCCCC--CCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTT------------TTTTCC
T ss_pred CCCCCc--cChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc-CCccChh------------hccccc
Confidence 888776 63455677889999999988 4566665 6778899999999887 6777665 345668
Q ss_pred ccEEeeccCc
Q 044247 243 LKRLRFWSMS 252 (333)
Q Consensus 243 L~~L~l~~~~ 252 (333)
|+.+++.+++
T Consensus 197 L~~l~L~~Np 206 (290)
T 1p9a_G 197 LPFAFLHGNP 206 (290)
T ss_dssp CSEEECCSCC
T ss_pred CCeEEeCCCC
Confidence 8899988754
No 67
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=9.7e-19 Score=154.61 Aligned_cols=58 Identities=5% Similarity=-0.134 Sum_probs=23.4
Q ss_pred CcccEEeecCCCcccccCccccccccccEEecCCCCCccc-ccccccccccCceeeeEEE
Q 044247 12 YNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRY-LPVGIGELIRLRRVTKFVV 70 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~L~l~~~ 70 (333)
+++++|++.++. +...+..+..+++|++|++++|..... ++..+..+++|++|++.+|
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~ 128 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 128 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred ccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence 444444444444 222222233444444444444421111 3333444444444444444
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=5.8e-17 Score=138.97 Aligned_cols=207 Identities=20% Similarity=0.175 Sum_probs=133.1
Q ss_pred ccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCceeEecCCC--CCCChhhHHHH
Q 044247 32 IGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDGLG--GVSDAGEARRA 109 (333)
Q Consensus 32 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~ 109 (333)
...+++|+.|++++| .+..++ .++.+++|++|++++|.... ...+..+++|+.|++.... .++. .
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~L~~n~l~~~~~------~ 103 (272)
T 3rfs_A 37 QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHD-----ISALKELTNLTYLILTGNQLQSLPN------G 103 (272)
T ss_dssp HHHHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCC-----CGGGTTCTTCCEEECTTSCCCCCCT------T
T ss_pred cccccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCCCC-----chhhcCCCCCCEEECCCCccCccCh------h
Confidence 344555556665555 333332 25555556666555554431 2345555555555554321 1111 2
Q ss_pred hhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEe
Q 044247 110 ELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHL 189 (333)
Q Consensus 110 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 189 (333)
.+..+++|++|++++|.+. ......+..+++|+.|++++|.... +++..+..+++|+.|++
T Consensus 104 ~~~~l~~L~~L~L~~n~l~-----------------~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQ-----------------SLPDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTTTCTTCCEEECTTSCCC-----------------CCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEEC
T ss_pred HhcCCcCCCEEECCCCcCC-----------------ccCHHHhccCCCCCEEECCCCccCc--cCHHHhccCccCCEEEC
Confidence 3566788888888888532 2223446778899999999887776 53445678899999999
Q ss_pred ecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCcccccc
Q 044247 190 FECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEI 267 (333)
Q Consensus 190 ~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~ 267 (333)
++|. +..+++ ++.+++|+.|++++|. +..++... +..+++|+.|++.+++- . +
T Consensus 165 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L~~L~l~~N~~------~-~----- 219 (272)
T 3rfs_A 165 SYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGV-----------FDRLTSLQYIWLHDNPW------D-C----- 219 (272)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT-----------TTTCTTCCEEECCSSCB------C-C-----
T ss_pred CCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCHHH-----------HhCCcCCCEEEccCCCc------c-c-----
Confidence 9984 455555 6788999999999987 55554432 46788999999998641 1 2
Q ss_pred ccCCCcceEecccCcCcccCCcccCCCCC
Q 044247 268 IIMPRLSSLSIQSCRELKALPDHLLQKST 296 (333)
Q Consensus 268 ~~~~~L~~L~l~~c~~l~~l~~~~~~l~~ 296 (333)
.+|+|+.+++.++.....+|..++.++.
T Consensus 220 -~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 -TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 5788999988876666677776654443
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=3.9e-16 Score=133.67 Aligned_cols=195 Identities=24% Similarity=0.263 Sum_probs=117.8
Q ss_pred cccEEeecCCCcccccCccccccccccEEecCCCCCcccccc-cccccccCceeeeEEEcCccCCCCCccccccCccCce
Q 044247 13 NLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQ 91 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 91 (333)
+.++++++++. +..+|..+. +++++|++++| .+..++. .++.+++|++|++++|.... .....+..+++|+.
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQT---LPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSC---CCTTTTSSCTTCCE
T ss_pred CCCEEEccCCC-CCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCe---eChhhhcCCCCCCE
Confidence 46788888887 667776554 67888888888 4555553 57788888888888776542 12222355666666
Q ss_pred eEecC--CCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCC
Q 044247 92 CSIDG--LGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGR 169 (333)
Q Consensus 92 L~l~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 169 (333)
|++.. +..++. ..+..+++|++|++++|.+. ......+..+++|+.|++++|...
T Consensus 90 L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~-----------------~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 90 LWVTDNKLQALPI------GVFDQLVNLAELRLDRNQLK-----------------SLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp EECCSSCCCCCCT------TTTTTCSSCCEEECCSSCCC-----------------CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCcCCH------hHcccccCCCEEECCCCccC-----------------eeCHHHhCcCcCCCEEECCCCcCC
Confidence 66643 222221 23455667777777766421 122234556677777777776665
Q ss_pred CCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEe
Q 044247 170 RNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLR 247 (333)
Q Consensus 170 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~ 247 (333)
. +++..+..+++|+.|++++| .+..++. +..+++|++|++++|. ++.++... +..+++|+.|+
T Consensus 147 ~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L~~L~ 211 (270)
T 2o6q_A 147 S--LPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGA-----------FDSLEKLKMLQ 211 (270)
T ss_dssp C--CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT-----------TTTCTTCCEEE
T ss_pred c--cCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCcCCHHH-----------hccccCCCEEE
Confidence 5 42333556677777777776 3344443 5566777777777765 44444332 34566677777
Q ss_pred eccCc
Q 044247 248 FWSMS 252 (333)
Q Consensus 248 l~~~~ 252 (333)
+++++
T Consensus 212 l~~N~ 216 (270)
T 2o6q_A 212 LQENP 216 (270)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 76643
No 70
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=5.2e-16 Score=137.94 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=45.7
Q ss_pred CccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCC
Q 044247 183 NLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGT 261 (333)
Q Consensus 183 ~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~ 261 (333)
.++.|++++| .++.++. .....+|+.|++.++..++.++... +..+++|++|+++++ +++.++..
T Consensus 155 ~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~-----------f~~l~~L~~LdLs~N-~l~~lp~~- 220 (350)
T 4ay9_X 155 ESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV-----------FHGASGPVILDISRT-RIHSLPSY- 220 (350)
T ss_dssp SCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTT-----------TTTEECCSEEECTTS-CCCCCCSS-
T ss_pred hhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHH-----------hccCcccchhhcCCC-CcCccChh-
Confidence 3555555555 2333332 2233455555555444455554332 234455555555553 34333311
Q ss_pred ccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEE
Q 044247 262 AIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEI 302 (333)
Q Consensus 262 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 302 (333)
.|.+|+.|.+.++..++.+|. +..+++|+.+++
T Consensus 221 -------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l 253 (350)
T 4ay9_X 221 -------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253 (350)
T ss_dssp -------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred -------hhccchHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence 245555555555555555553 334555555555
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=2.9e-16 Score=134.42 Aligned_cols=183 Identities=21% Similarity=0.285 Sum_probs=141.6
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccC-ccccccccccEEecCCCCCccccccc-ccccccCceeeeEEEcCccCCCC
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELP-QGIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFVVCGGYDRAC 78 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~ 78 (333)
++.+|..+. ++|++|++++|. +..++ ..+..+++|++|++++| .+..+|.. +..+++|++|++.+|.... .
T Consensus 28 l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~---~ 100 (270)
T 2o6q_A 28 LTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQA---L 100 (270)
T ss_dssp CSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCC---C
T ss_pred CCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCc---C
Confidence 356776655 689999999998 65555 47899999999999998 56677665 5789999999999988763 3
Q ss_pred CccccccCccCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCC
Q 044247 79 SLGSLKKLNLLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPP 156 (333)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (333)
....+..+++|+.|++... ..++. ..+..+++|++|++++|.+. ......+..++
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~-----------------~~~~~~~~~l~ 157 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQLKSLPP------RVFDSLTKLTYLSLGYNELQ-----------------SLPKGVFDKLT 157 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCC-----------------CCCTTTTTTCT
T ss_pred CHhHcccccCCCEEECCCCccCeeCH------HHhCcCcCCCEEECCCCcCC-----------------ccCHhHccCCc
Confidence 3345677888999888653 23322 34678899999999999532 22233477889
Q ss_pred CccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceeccccc
Q 044247 157 NLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 157 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~ 216 (333)
+|+.|++++|.... +++..+..+++|+.|++++| .++.++. +..+++|+.|++++|+
T Consensus 158 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 158 SLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccceeEecCCcCcE--eChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 99999999998877 63445778999999999999 4556665 7789999999999987
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=4.3e-17 Score=151.22 Aligned_cols=224 Identities=16% Similarity=0.088 Sum_probs=166.8
Q ss_pred ccCccccc----cccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCceeEecCCCCCCC
Q 044247 27 ELPQGIGK----LRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDGLGGVSD 102 (333)
Q Consensus 27 ~lp~~i~~----l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 102 (333)
.+|..+.. +++|++|++++|......|..++.+++|++|++++|.... .+ .+..+++|+.|++.... +.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~-~l~~l~~L~~L~Ls~N~-l~- 93 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE----TL-DLESLSTLRTLDLNNNY-VQ- 93 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE----EE-ECTTCTTCCEEECCSSE-EE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC----Cc-ccccCCCCCEEEecCCc-CC-
Confidence 44555544 4599999999994433345679999999999999988753 22 27888999998887532 11
Q ss_pred hhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCC
Q 044247 103 AGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLT 182 (333)
Q Consensus 103 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 182 (333)
.+...++|++|++++|.+.. .+. ..+++|+.|++++|.... +.+..+..++
T Consensus 94 -------~l~~~~~L~~L~L~~N~l~~------------------~~~--~~l~~L~~L~L~~N~l~~--~~~~~~~~l~ 144 (487)
T 3oja_A 94 -------ELLVGPSIETLHAANNNISR------------------VSC--SRGQGKKNIYLANNKITM--LRDLDEGCRS 144 (487)
T ss_dssp -------EEEECTTCCEEECCSSCCCC------------------EEE--CCCSSCEEEECCSSCCCS--GGGBCGGGGS
T ss_pred -------CCCCCCCcCEEECcCCcCCC------------------CCc--cccCCCCEEECCCCCCCC--CCchhhcCCC
Confidence 23344899999999996432 111 235789999999998776 5355778899
Q ss_pred CccEEEeecCCCCCCCCC-CC-CCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccC
Q 044247 183 NLRVLHLFECRNCEHLPP-LG-KLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLG 260 (333)
Q Consensus 183 ~L~~L~l~~~~~~~~l~~-~~-~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~ 260 (333)
+|+.|++++|...+..|. +. .+++|+.|++++|. +..++. ...+++|+.|+++++ .+..
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-------------~~~l~~L~~L~Ls~N-~l~~---- 205 (487)
T 3oja_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------------QVVFAKLKTLDLSSN-KLAF---- 205 (487)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------------CCCCTTCCEEECCSS-CCCE----
T ss_pred CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-------------cccCCCCCEEECCCC-CCCC----
Confidence 999999999954433333 43 68999999999998 555533 346899999999996 4443
Q ss_pred CccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccChhh
Q 044247 261 TAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACHIL 309 (333)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~~l 309 (333)
+|..+..+++|+.|++++ +.+..+|..+..+++|+.|++ .+|+..
T Consensus 206 --~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l-~~N~l~ 250 (487)
T 3oja_A 206 --MGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDL-RGNGFH 250 (487)
T ss_dssp --ECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEEC-TTCCBC
T ss_pred --CCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEc-CCCCCc
Confidence 334466899999999998 467788888888999999999 887644
No 73
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=2.6e-16 Score=144.64 Aligned_cols=156 Identities=22% Similarity=0.142 Sum_probs=94.9
Q ss_pred CcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCce
Q 044247 12 YNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQ 91 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 91 (333)
++|++|++++|. +..+| .++.+++|++|++++| .+..+|..+ .+|++|++++|.... . +.+..+++|+.
T Consensus 131 ~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n~l~~----l-~~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNNQLEE----L-PELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCSS----C-CCCTTCTTCCE
T ss_pred CCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCCcCCc----C-ccccCCCCCCE
Confidence 578888888887 65677 4888888888888888 555666543 578888888776653 2 25677777877
Q ss_pred eEecCCC--CCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCC
Q 044247 92 CSIDGLG--GVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGR 169 (333)
Q Consensus 92 L~l~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 169 (333)
|++.... .++. ..++|++|++++|.+ ..++ .+..+++|+.|++++|...
T Consensus 200 L~l~~N~l~~l~~----------~~~~L~~L~l~~n~l------------------~~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 200 IYADNNSLKKLPD----------LPLSLESIVAGNNIL------------------EELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp EECCSSCCSSCCC----------CCTTCCEEECCSSCC------------------SSCC-CCTTCTTCCEEECCSSCCS
T ss_pred EECCCCcCCcCCC----------CcCcccEEECcCCcC------------------Cccc-ccCCCCCCCEEECCCCcCC
Confidence 7765432 2211 124677777777742 2233 3556666666666666555
Q ss_pred CCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceeccccc
Q 044247 170 RNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMK 216 (333)
Q Consensus 170 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~ 216 (333)
. + |.. +++|+.|++++|. +..+|.. +++|+.|++++|.
T Consensus 251 ~--l-~~~---~~~L~~L~l~~N~-l~~l~~~--~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 251 T--L-PDL---PPSLEALNVRDNY-LTDLPEL--PQSLTFLDVSENI 288 (454)
T ss_dssp S--C-CSC---CTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC
T ss_pred c--c-ccc---ccccCEEECCCCc-ccccCcc--cCcCCEEECcCCc
Confidence 4 4 331 3556666666652 3333331 2455555555544
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=3.5e-17 Score=140.37 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=25.1
Q ss_pred CCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEc
Q 044247 10 ELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVC 71 (333)
Q Consensus 10 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 71 (333)
.+++|+.|++.++. +..++. +..+++|++|++++| .+..++ .++.+++|++|++.+|.
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSC
T ss_pred cccceeeeeeCCCC-cccccc-cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCc
Confidence 34444444444444 333332 444444444444444 223322 34444444444444443
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=1.8e-18 Score=155.97 Aligned_cols=258 Identities=17% Similarity=0.106 Sum_probs=143.9
Q ss_pred cccchhcCCCcccEEeecCCCcccc----cCccccccccccEEecCCCCC--cc-cccccc-------cccccCceeeeE
Q 044247 3 KLPETLCELYNLERVNVSGCSHLRE----LPQGIGKLRKLMYLDNDYTDS--LR-YLPVGI-------GELIRLRRVTKF 68 (333)
Q Consensus 3 ~lp~~l~~l~~L~~L~l~~~~~~~~----lp~~i~~l~~L~~L~l~~~~~--~~-~~p~~i-------~~l~~L~~L~l~ 68 (333)
.++..+..+++|++|++++|..... ++..+..+++|++|++++|.. +. .+|.++ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4667778888888888888873333 344466788888888888621 11 234333 577888888888
Q ss_pred EEcCccCCC-CCccccccCccCceeEecCCCCCCChhhHHHHhhccc---------CCccceEEeecCCCCCchhhhccc
Q 044247 69 VVCGGYDRA-CSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKK---------KNLFDLELDFDNLRDGDEEQAGRR 138 (333)
Q Consensus 69 ~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~---------~~L~~L~l~~~~~~~~~~~~~~~~ 138 (333)
+|....... ..+..+..+++|+.|++....--......+...+..+ ++|++|++++|.+. +.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~--~~------ 174 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE--NG------ 174 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT--GG------
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC--cH------
Confidence 776652000 1344566777788877765432111111222334444 77888888777521 00
Q ss_pred CCcccccccccccCCCCCCccEEEEeeecCCCC----ccCchhhhcCCCccEEEeecCCCC----CCCCC-CCCCccccc
Q 044247 139 ENEEDEDERLLDALGPPPNLKELHIHEYRGRRN----VVPKNWVMSLTNLRVLHLFECRNC----EHLPP-LGKLTSLED 209 (333)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~----~~l~~-~~~l~~L~~ 209 (333)
....+...+..+++|+.|++++|..... .. +..+..+++|+.|++++|... ..++. +..+++|++
T Consensus 175 -----~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~-~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 175 -----SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL-LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp -----GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHH-HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred -----HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHH-HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 1111223455667788888877765420 01 225556777888888777421 22333 566777788
Q ss_pred eecccccccccccccccCCCCCCCCCcc--ccCCCccEEeeccCccccccccCCcccccc-ccCCCcceEecccCcCc
Q 044247 210 LYIAGMKSVKRVGNEFLGVESDTDGSSV--IAFPKLKRLRFWSMSELEEWDLGTAIKGEI-IIMPRLSSLSIQSCREL 284 (333)
Q Consensus 210 L~l~~~~~l~~i~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l 284 (333)
|++++|. +.......+... + ..+++|++|++++|. +..... ..+|..+ ..+++|++|++++|+.-
T Consensus 249 L~L~~n~-i~~~~~~~l~~~-------l~~~~~~~L~~L~L~~n~-i~~~g~-~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 249 LGLNDCL-LSARGAAAVVDA-------FSKLENIGLQTLRLQYNE-IELDAV-RTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp EECTTCC-CCHHHHHHHHHH-------HHTCSSCCCCEEECCSSC-CBHHHH-HHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred EECCCCC-CchhhHHHHHHH-------HhhccCCCeEEEECcCCc-CCHHHH-HHHHHHHHhcCCCceEEEccCCcCC
Confidence 8887776 332211000000 2 236777777777753 322100 0133333 34677788877776543
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=4.8e-16 Score=138.17 Aligned_cols=226 Identities=15% Similarity=0.129 Sum_probs=157.5
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCc-cccccccccEEecCCCCCccccccc-ccccccCceeeeEE-EcCccCCC
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQ-GIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFV-VCGGYDRA 77 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~-~~~~~~~~ 77 (333)
++++|..+ .+++++|++++|. +..+|. ++.++++|++|++++|...+.+|.. +..+++++++...+ +... .
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~---~ 94 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL---Y 94 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC---E
T ss_pred CCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc---c
Confidence 45677766 3678889998888 777775 5788889999999888555666643 56777777655444 3333 2
Q ss_pred CCccccccCccCceeEecC--CCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCccccccccc-ccCCC
Q 044247 78 CSLGSLKKLNLLRQCSIDG--LGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLL-DALGP 154 (333)
Q Consensus 78 ~~~~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 154 (333)
..+..+..+++|+.|.+.. +..++. ..+....++..+++..+. ....+. ..+..
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~------~~~~~~~~l~~l~l~~~~-----------------~i~~l~~~~f~~ 151 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPD------VHKIHSLQKVLLDIQDNI-----------------NIHTIERNSFVG 151 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCC------CTTCCBSSCEEEEEESCT-----------------TCCEECTTSSTT
T ss_pred cCchhhhhccccccccccccccccCCc------hhhcccchhhhhhhcccc-----------------ccccccccchhh
Confidence 2345567778888876643 333332 122334456666665542 222222 23444
Q ss_pred C-CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCC
Q 044247 155 P-PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESD 231 (333)
Q Consensus 155 ~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 231 (333)
. ..++.|++++|.... + +.......+|+.|.+.++..++.+|. ++.+++|+.|++++|. ++.+|.
T Consensus 152 ~~~~l~~L~L~~N~i~~--i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~-------- 219 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQE--I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS-------- 219 (350)
T ss_dssp SBSSCEEEECCSSCCCE--E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS--------
T ss_pred cchhhhhhccccccccC--C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh--------
Confidence 4 468899999998887 7 55554567899999998878888886 7899999999999997 777764
Q ss_pred CCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEeccc
Q 044247 232 TDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQS 280 (333)
Q Consensus 232 ~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 280 (333)
..+..|+.|.+.++.+++.++. +..+++|+.+++.+
T Consensus 220 ------~~~~~L~~L~~l~~~~l~~lP~-------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 ------YGLENLKKLRARSTYNLKKLPT-------LEKLVALMEASLTY 255 (350)
T ss_dssp ------SSCTTCCEEECTTCTTCCCCCC-------TTTCCSCCEEECSC
T ss_pred ------hhhccchHhhhccCCCcCcCCC-------chhCcChhhCcCCC
Confidence 3677889999888888877763 23689999999875
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=2e-16 Score=138.08 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=145.7
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
..+| .+..+++|++|++++|. +..++. +..+++|++|++++| .+..++ .+..+++|++|++++|.... ..
T Consensus 54 ~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~l~~-----~~ 123 (308)
T 1h6u_A 54 TTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQITD-----VT 123 (308)
T ss_dssp CCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSCCCC-----CG
T ss_pred cCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCCCCC-----ch
Confidence 4566 58899999999999998 777777 999999999999999 566665 58899999999999988763 23
Q ss_pred ccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEE
Q 044247 82 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKEL 161 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 161 (333)
.+..+++|+.|++....- .... .+..+++|++|++++|.+. .+.. +..+++|+.|
T Consensus 124 ~l~~l~~L~~L~l~~n~l-~~~~-----~l~~l~~L~~L~l~~n~l~------------------~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 124 PLAGLSNLQVLYLDLNQI-TNIS-----PLAGLTNLQYLSIGNAQVS------------------DLTP-LANLSKLTTL 178 (308)
T ss_dssp GGTTCTTCCEEECCSSCC-CCCG-----GGGGCTTCCEEECCSSCCC------------------CCGG-GTTCTTCCEE
T ss_pred hhcCCCCCCEEECCCCcc-CcCc-----cccCCCCccEEEccCCcCC------------------CChh-hcCCCCCCEE
Confidence 488899999998876432 2221 2778899999999999542 2222 7788999999
Q ss_pred EEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccc
Q 044247 162 HIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGN 223 (333)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~ 223 (333)
++++|.... + +. +..+++|+.|++++| .+..++++..+++|+.|++++|+ +...+.
T Consensus 179 ~l~~n~l~~--~-~~-l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 179 KADDNKISD--I-SP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp ECCSSCCCC--C-GG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE-EECCCE
T ss_pred ECCCCccCc--C-hh-hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe-eecCCe
Confidence 999998887 5 43 778999999999999 55666678899999999999998 555543
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=4.2e-16 Score=130.96 Aligned_cols=205 Identities=17% Similarity=0.149 Sum_probs=144.7
Q ss_pred ccccCccccccccccEEecCCCCCcccccc-cccccccCceeeeEEEc-CccCCCCCccccccCccCceeEecCCCCCCC
Q 044247 25 LRELPQGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVC-GGYDRACSLGSLKKLNLLRQCSIDGLGGVSD 102 (333)
Q Consensus 25 ~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 102 (333)
+..+|. +. ++|++|++++| .+..+|. .++.+++|++|++.+|. ... ++.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-------------------------i~~ 73 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQ-------------------------LES 73 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCE-------------------------ECT
T ss_pred ccccCC-CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcce-------------------------eCH
Confidence 555565 32 36777777776 4455444 45666667777666554 221 111
Q ss_pred hhhHHHHhhcccCCccceEEee-cCCCCCchhhhcccCCcccccccc-cccCCCCCCccEEEEeeecCCCCccCchhhhc
Q 044247 103 AGEARRAELEKKKNLFDLELDF-DNLRDGDEEQAGRRENEEDEDERL-LDALGPPPNLKELHIHEYRGRRNVVPKNWVMS 180 (333)
Q Consensus 103 ~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 180 (333)
..+..+++|++|++++ |.+ ..+ ...+..+++|+.|++++|.... + |. +..
T Consensus 74 ------~~f~~l~~L~~L~l~~~n~l------------------~~i~~~~f~~l~~L~~L~l~~n~l~~--l-p~-~~~ 125 (239)
T 2xwt_C 74 ------HSFYNLSKVTHIEIRNTRNL------------------TYIDPDALKELPLLKFLGIFNTGLKM--F-PD-LTK 125 (239)
T ss_dssp ------TTEESCTTCCEEEEEEETTC------------------CEECTTSEECCTTCCEEEEEEECCCS--C-CC-CTT
T ss_pred ------hHcCCCcCCcEEECCCCCCe------------------eEcCHHHhCCCCCCCEEeCCCCCCcc--c-cc-ccc
Confidence 1355678899999988 642 233 3467788999999999999887 7 65 777
Q ss_pred CCCcc---EEEeecCCCCCCCCC--CCCCcccc-ceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccc
Q 044247 181 LTNLR---VLHLFECRNCEHLPP--LGKLTSLE-DLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSEL 254 (333)
Q Consensus 181 ~~~L~---~L~l~~~~~~~~l~~--~~~l~~L~-~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L 254 (333)
+++|+ .|++++|..++.++. ++.+++|+ .|++++|. ++.++...+ .. ++|++|+++++..+
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~-----------~~-~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF-----------NG-TKLDAVYLNKNKYL 192 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT-----------TT-CEEEEEECTTCTTC
T ss_pred ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc-----------CC-CCCCEEEcCCCCCc
Confidence 88887 999999956666665 78899999 99999987 667765432 23 79999999997667
Q ss_pred cccccCCccccccccC-CCcceEecccCcCcccCCcccCCCCCcceEEEcccChh
Q 044247 255 EEWDLGTAIKGEIIIM-PRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACHI 308 (333)
Q Consensus 255 ~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~~ 308 (333)
+.++. ..+..+ ++|++|++++ +.++.+|.. .+++|+.|++ .++..
T Consensus 193 ~~i~~-----~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l-~~~~~ 238 (239)
T 2xwt_C 193 TVIDK-----DAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIA-RNTWT 238 (239)
T ss_dssp CEECT-----TTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEEC-TTC--
T ss_pred ccCCH-----HHhhccccCCcEEECCC-CccccCChh--HhccCceeec-cCccC
Confidence 65542 223467 8999999998 567777775 5899999999 88754
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=1.4e-18 Score=156.71 Aligned_cols=252 Identities=15% Similarity=0.047 Sum_probs=173.9
Q ss_pred ccccCccccccccccEEecCCCCCccc----ccccccccccCceeeeEEEcCccCCCCCcccc-------ccCccCceeE
Q 044247 25 LRELPQGIGKLRKLMYLDNDYTDSLRY----LPVGIGELIRLRRVTKFVVCGGYDRACSLGSL-------KKLNLLRQCS 93 (333)
Q Consensus 25 ~~~lp~~i~~l~~L~~L~l~~~~~~~~----~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l-------~~l~~L~~L~ 93 (333)
...++..+..+++|++|++++|..... ++..+..+++|++|++++|......+..+..+ ..+++|+.|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 567788889999999999999933222 33446789999999999875543112233333 6788999998
Q ss_pred ecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCC---------CCccEEEEe
Q 044247 94 IDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPP---------PNLKELHIH 164 (333)
Q Consensus 94 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~L~~L~l~ 164 (333)
+....--......+...+..+++|++|++++|.+.+. ....+...+..+ ++|+.|+++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-------------~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-------------AGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH-------------HHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH-------------HHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 8765432222234556778899999999999976321 122233334334 899999999
Q ss_pred eecCCCCccCc---hhhhcCCCccEEEeecCCCCC------CCC-CCCCCccccceeccccccc-----ccccccccCCC
Q 044247 165 EYRGRRNVVPK---NWVMSLTNLRVLHLFECRNCE------HLP-PLGKLTSLEDLYIAGMKSV-----KRVGNEFLGVE 229 (333)
Q Consensus 165 ~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~------~l~-~~~~l~~L~~L~l~~~~~l-----~~i~~~~~~~~ 229 (333)
+|......+ + ..+..+++|+.|++++|. +. ..+ .+..+++|+.|++++|. + ..++..
T Consensus 168 ~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~----- 239 (386)
T 2ca6_A 168 RNRLENGSM-KEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIA----- 239 (386)
T ss_dssp SSCCTGGGH-HHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHH-----
T ss_pred CCCCCcHHH-HHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHH-----
Confidence 988763213 4 345578999999999994 44 234 57788999999999998 4 334432
Q ss_pred CCCCCCccccCCCccEEeeccCccccccccCCccccccc--cCCCcceEecccCcCcc----cCCccc-CCCCCcceEEE
Q 044247 230 SDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEII--IMPRLSSLSIQSCRELK----ALPDHL-LQKSTLQNLEI 302 (333)
Q Consensus 230 ~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~----~l~~~~-~~l~~L~~L~l 302 (333)
+..+++|++|++++|. +..... ..++..+. .+++|+.|++++|..-. .+|..+ ..+++|+.|++
T Consensus 240 -------l~~~~~L~~L~L~~n~-i~~~~~-~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 240 -------LKSWPNLRELGLNDCL-LSARGA-AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp -------GGGCTTCCEEECTTCC-CCHHHH-HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred -------HccCCCcCEEECCCCC-CchhhH-HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 5688999999999974 433210 01223332 38999999999976444 377665 55899999999
Q ss_pred cccCh
Q 044247 303 WGACH 307 (333)
Q Consensus 303 ~~~c~ 307 (333)
.+|+
T Consensus 311 -~~N~ 314 (386)
T 2ca6_A 311 -NGNR 314 (386)
T ss_dssp -TTSB
T ss_pred -cCCc
Confidence 8875
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=3.7e-16 Score=135.19 Aligned_cols=199 Identities=19% Similarity=0.121 Sum_probs=124.1
Q ss_pred ccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCceeEecCCCCCCChhhHHHHhh
Q 044247 32 IGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAEL 111 (333)
Q Consensus 32 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 111 (333)
+++++++++++++++ .++.+|..+. ++++.|++++|... ...+..+..+++|+.|++.... +.... ..
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~-----~~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLY---TFSLATLMPYTRLTQLNLDRAE-LTKLQ-----VD 73 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCS---EEEGGGGTTCTTCCEEECTTSC-CCEEE-----CC
T ss_pred ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCC---ccCHHHhhcCCCCCEEECCCCc-cCccc-----CC
Confidence 678899999999998 6788887664 68999999887765 2334456677777777665422 11111 11
Q ss_pred cccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeec
Q 044247 112 EKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFE 191 (333)
Q Consensus 112 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 191 (333)
..+++|++|++++|. ...++..+..+++|+.|++++|.... +++..+..+++|+.|++++
T Consensus 74 ~~l~~L~~L~Ls~N~------------------l~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQ------------------LQSLPLLGQTLPALTVLDVSFNRLTS--LPLGALRGLGELQELYLKG 133 (290)
T ss_dssp SCCTTCCEEECCSSC------------------CSSCCCCTTTCTTCCEEECCSSCCCC--CCSSTTTTCTTCCEEECTT
T ss_pred CCCCcCCEEECCCCc------------------CCcCchhhccCCCCCEEECCCCcCcc--cCHHHHcCCCCCCEEECCC
Confidence 455677777777763 23444555666777777777766665 5234566677777777777
Q ss_pred CCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCcccccccc
Q 044247 192 CRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIII 269 (333)
Q Consensus 192 ~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 269 (333)
| .+..++. +..+++|+.|++++|. ++.++... +..+++|+.|+++++ .++. +|..+..
T Consensus 134 N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~-----------~~~l~~L~~L~L~~N-~l~~------ip~~~~~ 193 (290)
T 1p9a_G 134 N-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGL-----------LNGLENLDTLLLQEN-SLYT------IPKGFFG 193 (290)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTT-----------TTTCTTCCEEECCSS-CCCC------CCTTTTT
T ss_pred C-CCCccChhhcccccCCCEEECCCCc-CCccCHHH-----------hcCcCCCCEEECCCC-cCCc------cChhhcc
Confidence 6 3444443 5566777777777766 55554432 345667777777664 3332 3344445
Q ss_pred CCCcceEecccCc
Q 044247 270 MPRLSSLSIQSCR 282 (333)
Q Consensus 270 ~~~L~~L~l~~c~ 282 (333)
.++|+.|++++++
T Consensus 194 ~~~L~~l~L~~Np 206 (290)
T 1p9a_G 194 SHLLPFAFLHGNP 206 (290)
T ss_dssp TCCCSEEECCSCC
T ss_pred cccCCeEEeCCCC
Confidence 6667777766543
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=7.8e-16 Score=147.13 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=90.4
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccC-ccccccccccEEecCCCCCcccccc-cccccccCceeeeEEEcCccCCCC
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELP-QGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVCGGYDRAC 78 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~ 78 (333)
++++|..+. +++++|++++|. +..+| .++.++++|++|++++| .+..+|. .++.+++|++|++++|.... .
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~---l 115 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQS---L 115 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCE---E
T ss_pred cCccCCCCC--cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCC---C
Confidence 356776654 478999999998 76665 57999999999999999 6677755 58999999999999998753 2
Q ss_pred CccccccCccCceeEecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCC
Q 044247 79 SLGSLKKLNLLRQCSIDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRD 129 (333)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 129 (333)
....+..+++|+.|++... ..++. ..++.+++|++|++++|.+..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~------~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTT------CCCTTCTTCCEEECCSSCCCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCCh------hhhhcCcccCeeccccCcccc
Confidence 3445788999999888653 33332 247788999999999998753
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=8e-16 Score=132.08 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=40.7
Q ss_pred ccccCccccccccccEEecCCCCCcccccc-cccccccCceeeeEEEcCccCCCCCccccccCccCceeEec
Q 044247 25 LRELPQGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSID 95 (333)
Q Consensus 25 ~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 95 (333)
+..+|..+. ++|++|++++| .+..++. .+..+++|++|++.+|.... .....+..+++|+.|++.
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCE---ECTTTTTTCTTCCEEECT
T ss_pred ccccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCc---cCHHHccCCcCCCEEECC
Confidence 456776553 57999999988 5555554 67888899999887775542 122233444444444443
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=3.7e-16 Score=135.28 Aligned_cols=170 Identities=21% Similarity=0.205 Sum_probs=114.6
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLN 87 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 87 (333)
+..+++|++|++++|. +..++. +..+++|++|++++| .+..++. +..+++|++|++++|.... +..+..++
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~-----~~~l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKD-----LSSLKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCC-----GGGGTTCT
T ss_pred hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCC-----ChhhccCC
Confidence 4567788888888887 666654 777888888888887 5555555 7788888888888776542 34467777
Q ss_pred cCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeec
Q 044247 88 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYR 167 (333)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (333)
+|+.|++.... +... ..+..+++|++|++++|.+. .+ ..+..+++|+.|++++|.
T Consensus 113 ~L~~L~L~~n~-i~~~-----~~l~~l~~L~~L~l~~n~l~------------------~~-~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 113 KLKSLSLEHNG-ISDI-----NGLVHLPQLESLYLGNNKIT------------------DI-TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp TCCEEECTTSC-CCCC-----GGGGGCTTCCEEECCSSCCC------------------CC-GGGGGCTTCSEEECCSSC
T ss_pred CCCEEECCCCc-CCCC-----hhhcCCCCCCEEEccCCcCC------------------cc-hhhccCCCCCEEEccCCc
Confidence 77777776532 2221 24556677777777777432 22 345566777777777776
Q ss_pred CCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceeccccc
Q 044247 168 GRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMK 216 (333)
Q Consensus 168 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~ 216 (333)
... + +. +..+++|+.|++++| .++.++.+..+++|+.|++++|.
T Consensus 168 l~~--~-~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 168 ISD--I-VP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCC--C-GG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred ccc--c-hh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 665 4 33 666777777777777 45556666777777777777766
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=7.1e-15 Score=139.54 Aligned_cols=229 Identities=18% Similarity=0.084 Sum_probs=148.1
Q ss_pred CCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCc
Q 044247 11 LYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLR 90 (333)
Q Consensus 11 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 90 (333)
..++++|+++++. +..+|..+. ++|++|++++| .+..+|. .+++|++|++++|.... .+. .+++|+
T Consensus 39 ~~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~----lp~---~l~~L~ 104 (622)
T 3g06_A 39 NNGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTS----LPV---LPPGLL 104 (622)
T ss_dssp HHCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSC----CCC---CCTTCC
T ss_pred CCCCcEEEecCCC-cCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCc----CCC---CCCCCC
Confidence 3468999999998 779998776 89999999999 6778876 57899999999988653 333 567888
Q ss_pred eeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCC
Q 044247 91 QCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRR 170 (333)
Q Consensus 91 ~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 170 (333)
.|++.... +.... ..+++|++|++++|.+. .++.. +++|+.|++++|....
T Consensus 105 ~L~Ls~N~-l~~l~-------~~l~~L~~L~L~~N~l~------------------~lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 105 ELSIFSNP-LTHLP-------ALPSGLCKLWIFGNQLT------------------SLPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp EEEECSCC-CCCCC-------CCCTTCCEEECCSSCCS------------------CCCCC---CTTCCEEECCSSCCSC
T ss_pred EEECcCCc-CCCCC-------CCCCCcCEEECCCCCCC------------------cCCCC---CCCCCEEECcCCcCCC
Confidence 88876532 22211 14578999999999542 22222 3678888888776665
Q ss_pred CccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCC----C-CCccccCCCccE
Q 044247 171 NVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDT----D-GSSVIAFPKLKR 245 (333)
Q Consensus 171 ~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~----~-~~~~~~l~~L~~ 245 (333)
+ +. .+++|+.|++++| .+..+| ..+++|+.|++++|. ++.++.......... . ......+++|++
T Consensus 156 --l-~~---~~~~L~~L~L~~N-~l~~l~--~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~ 225 (622)
T 3g06_A 156 --L-PA---LPSELCKLWAYNN-QLTSLP--MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKE 225 (622)
T ss_dssp --C-CC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred --c-CC---ccCCCCEEECCCC-CCCCCc--ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCCCCCCCCE
Confidence 5 43 2455666666665 334444 334566666666655 433332110000000 0 000113467888
Q ss_pred EeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 246 LRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 246 L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
|+++++ +++.++ ..+++|+.|++++| .++.+|. .+++|+.|++ .+|.
T Consensus 226 L~Ls~N-~L~~lp---------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~L-s~N~ 272 (622)
T 3g06_A 226 LIVSGN-RLTSLP---------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSV-YRNQ 272 (622)
T ss_dssp EECCSS-CCSCCC---------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEEC-CSSC
T ss_pred EEccCC-ccCcCC---------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeC-CCCC
Confidence 888775 454433 25689999999985 6777777 4789999999 8874
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=5.7e-18 Score=156.12 Aligned_cols=141 Identities=17% Similarity=0.147 Sum_probs=75.1
Q ss_pred CCCCccEEEEeeecCCCCc---cCchhhhcCCCccEEEeecCCCCCCC-----CC--CCCCccccceecccccccccccc
Q 044247 154 PPPNLKELHIHEYRGRRNV---VPKNWVMSLTNLRVLHLFECRNCEHL-----PP--LGKLTSLEDLYIAGMKSVKRVGN 223 (333)
Q Consensus 154 ~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~l-----~~--~~~l~~L~~L~l~~~~~l~~i~~ 223 (333)
.+++|+.|++++|...... + +..+..+++|+.|++++|. +++. .. ....++|++|++++|. +.....
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 330 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACC 330 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred CCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHH
Confidence 4566777777666543310 1 2334456777777777763 2211 00 1123567777777766 332211
Q ss_pred cccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccc-cCCCcceEecccCcCcc----cCCcccCCCCCcc
Q 044247 224 EFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEII-IMPRLSSLSIQSCRELK----ALPDHLLQKSTLQ 298 (333)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~----~l~~~~~~l~~L~ 298 (333)
..+.. .+..+++|++|+++++ .+.+..... +...+. ..++|++|++++|..-. .++..+..+++|+
T Consensus 331 ~~l~~-------~l~~~~~L~~L~Ls~n-~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 331 SHFSS-------VLAQNRFLLELQISNN-RLEDAGVRE-LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp HHHHH-------HHHHCSSCCEEECCSS-BCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred HHHHH-------HHhhCCCccEEEccCC-ccccccHHH-HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 00000 0345678888888775 343321100 001111 25788888888875332 5666666688888
Q ss_pred eEEEcccCh
Q 044247 299 NLEIWGACH 307 (333)
Q Consensus 299 ~L~l~~~c~ 307 (333)
.|++ ++|+
T Consensus 402 ~L~l-~~N~ 409 (461)
T 1z7x_W 402 ELDL-SNNC 409 (461)
T ss_dssp EEEC-CSSS
T ss_pred EEEC-CCCC
Confidence 8888 8775
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=5.5e-18 Score=156.21 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=20.4
Q ss_pred ccccCCCcceEecccCcCcccC-Cc----ccC-CCCCcceEEEcccCh
Q 044247 266 EIIIMPRLSSLSIQSCRELKAL-PD----HLL-QKSTLQNLEIWGACH 307 (333)
Q Consensus 266 ~~~~~~~L~~L~l~~c~~l~~l-~~----~~~-~l~~L~~L~l~~~c~ 307 (333)
.+..+++|++|++++|. ++.. +. .+. ..++|+.|++ ++|.
T Consensus 336 ~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L-~~n~ 381 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWL-ADCD 381 (461)
T ss_dssp HHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC-TTSC
T ss_pred HHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEEC-CCCC
Confidence 34455666666666653 3221 11 111 1456777777 6664
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=5.9e-17 Score=153.99 Aligned_cols=265 Identities=12% Similarity=0.062 Sum_probs=139.7
Q ss_pred ccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCC--------------------------ccccccccc
Q 044247 4 LPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDS--------------------------LRYLPVGIG 57 (333)
Q Consensus 4 lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~--------------------------~~~~p~~i~ 57 (333)
++..+.++++|++|++.+|. +..+|..+..+++|++|+++.+.. ...+|..+.
T Consensus 212 l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~ 290 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP 290 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGG
T ss_pred HHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHh
Confidence 44556678889999998887 555676677777777777764311 122333334
Q ss_pred ccccCceeeeEEEcCccCCCCCccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEee----------c-C
Q 044247 58 ELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDF----------D-N 126 (333)
Q Consensus 58 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~-~ 126 (333)
.+++|++|++++|.... ......+..+++|+.|.+.. .+ ...........+++|++|++.+ + .
T Consensus 291 ~~~~L~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~--~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLET--EDHCTLIQKCPNLEVLETRN--VI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGCCEEEETTCCCCH--HHHHHHHTTCTTCCEEEEEG--GG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred hcCCCcEEecCCCcCCH--HHHHHHHHhCcCCCEEeccC--cc--CHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 44555555555444221 11111234445555544441 11 1122223334455566666652 1 1
Q ss_pred CCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhh-cCCCccEEEeec---CCCCCCCCC--
Q 044247 127 LRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVM-SLTNLRVLHLFE---CRNCEHLPP-- 200 (333)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~---~~~~~~l~~-- 200 (333)
+ ....+......+++|+.|+++.+..... . ...+. .+++|+.|++++ |..+++.|.
T Consensus 365 ~----------------~~~~~~~l~~~~~~L~~L~l~~~~l~~~-~-~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 365 V----------------SQRGLIALAQGCQELEYMAVYVSDITNE-S-LESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp C----------------CHHHHHHHHHHCTTCSEEEEEESCCCHH-H-HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred c----------------CHHHHHHHHhhCccCeEEEeecCCccHH-H-HHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 1 1111111223456777777754443321 1 22333 377777777763 334444321
Q ss_pred -----CCCCccccceecccccc-cccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcc
Q 044247 201 -----LGKLTSLEDLYIAGMKS-VKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLS 274 (333)
Q Consensus 201 -----~~~l~~L~~L~l~~~~~-l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~ 274 (333)
+.++++|+.|+++.|.+ +.......+ ...+++|++|++++|. +.+. +++..+..+++|+
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~----------~~~~~~L~~L~L~~n~-l~~~----~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI----------GQYSPNVRWMLLGYVG-ESDE----GLMEFSRGCPNLQ 491 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH----------HHSCTTCCEEEECSCC-SSHH----HHHHHHTCCTTCC
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHH----------HHhCccceEeeccCCC-CCHH----HHHHHHhcCcccC
Confidence 33467778888765542 111110000 2347778888887753 3221 2333345678999
Q ss_pred eEecccCcCcc--cCCcccCCCCCcceEEEcccChhhHh
Q 044247 275 SLSIQSCRELK--ALPDHLLQKSTLQNLEIWGACHILQE 311 (333)
Q Consensus 275 ~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~~c~~l~~ 311 (333)
+|++++|+ ++ .++.....+++|+.|++ ++|. +++
T Consensus 492 ~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l-s~n~-it~ 527 (592)
T 3ogk_B 492 KLEMRGCC-FSERAIAAAVTKLPSLRYLWV-QGYR-ASM 527 (592)
T ss_dssp EEEEESCC-CBHHHHHHHHHHCSSCCEEEE-ESCB-CCT
T ss_pred eeeccCCC-CcHHHHHHHHHhcCccCeeEC-cCCc-CCH
Confidence 99999987 43 24444456889999999 8887 443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=4e-16 Score=136.35 Aligned_cols=223 Identities=14% Similarity=0.043 Sum_probs=155.5
Q ss_pred CcccEEeecCCCccc----ccCccccccccccEEecCCCCCcccccccc--cccccCceeeeEEEcCccCCCCC-ccccc
Q 044247 12 YNLERVNVSGCSHLR----ELPQGIGKLRKLMYLDNDYTDSLRYLPVGI--GELIRLRRVTKFVVCGGYDRACS-LGSLK 84 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~l~~~~~~~~~~~~-~~~l~ 84 (333)
..++.+.+..+.... .++. ...+++|++|++++|......|..+ ..+++|++|++++|......... ...+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 357888888887321 1222 2346779999999996555667666 88999999999998876310100 12334
Q ss_pred cCccCceeEecCCC--CCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccc--cccCCCCCCccE
Q 044247 85 KLNLLRQCSIDGLG--GVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERL--LDALGPPPNLKE 160 (333)
Q Consensus 85 ~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~L~~ 160 (333)
.+++|+.|++.... .+.. ..+..+++|++|++++|.+.. .... ...+..+++|++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSC------EQVRAFPALTSLDLSDNPGLG---------------ERGLMAALCPHKFPAIQN 201 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCT------TSCCCCTTCCEEECCSCTTCH---------------HHHHHTTSCTTSSCCCCS
T ss_pred hccCCCEEEeeCCCcchhhH------HHhccCCCCCEEECCCCCCcc---------------chhhhHHHhhhcCCCCCE
Confidence 68889988876532 2221 356788999999999996321 1112 223457889999
Q ss_pred EEEeeecCCCCccCch----hhhcCCCccEEEeecCCCCCCCCC-CCCC---ccccceecccccccccccccccCCCCCC
Q 044247 161 LHIHEYRGRRNVVPKN----WVMSLTNLRVLHLFECRNCEHLPP-LGKL---TSLEDLYIAGMKSVKRVGNEFLGVESDT 232 (333)
Q Consensus 161 L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~l~~-~~~l---~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 232 (333)
|++++|.... + +. .+..+++|+.|++++|......|. ++.+ ++|++|++++|. ++.+|..
T Consensus 202 L~Ls~N~l~~--l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~-------- 269 (310)
T 4glp_A 202 LALRNTGMET--P-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG-------- 269 (310)
T ss_dssp CBCCSSCCCC--H-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC--------
T ss_pred EECCCCCCCc--h-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh--------
Confidence 9999998876 5 44 246789999999999954444343 4444 799999999998 6666543
Q ss_pred CCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCc
Q 044247 233 DGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCR 282 (333)
Q Consensus 233 ~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 282 (333)
.+++|++|+++++ .++.++.. . .+++|+.|++++++
T Consensus 270 ------~~~~L~~L~Ls~N-~l~~~~~~-~------~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 270 ------LPAKLRVLDLSSN-RLNRAPQP-D------ELPEVDNLTLDGNP 305 (310)
T ss_dssp ------CCSCCSCEECCSC-CCCSCCCT-T------SCCCCSCEECSSTT
T ss_pred ------hcCCCCEEECCCC-cCCCCchh-h------hCCCccEEECcCCC
Confidence 2479999999985 67776542 2 67999999999865
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=5.7e-17 Score=143.18 Aligned_cols=191 Identities=15% Similarity=0.138 Sum_probs=114.1
Q ss_pred cccchhcCCCcccEEeecCCCcccc-cCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCC-CCc
Q 044247 3 KLPETLCELYNLERVNVSGCSHLRE-LPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRA-CSL 80 (333)
Q Consensus 3 ~lp~~l~~l~~L~~L~l~~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~-~~~ 80 (333)
..+..+..+++|++|++++|..... +|..+..+++|++|++++|......+..++.+++|++|++.+|.... . ...
T Consensus 84 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~--~~~l~ 161 (336)
T 2ast_B 84 QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS--EFALQ 161 (336)
T ss_dssp SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC--HHHHH
T ss_pred ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC--HHHHH
Confidence 3445577899999999999983334 88888999999999999995444566678888999999887763221 1 122
Q ss_pred cccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeec-CCCCCchhhhcccCCcccccccccccCCCCC-Cc
Q 044247 81 GSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFD-NLRDGDEEQAGRRENEEDEDERLLDALGPPP-NL 158 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L 158 (333)
..+..+ ++|++|++++| .+. ...+...+..++ +|
T Consensus 162 ~~~~~~----------------------------~~L~~L~l~~~~~l~----------------~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 162 TLLSSC----------------------------SRLDELNLSWCFDFT----------------EKHVQVAVAHVSETI 197 (336)
T ss_dssp HHHHHC----------------------------TTCCEEECCCCTTCC----------------HHHHHHHHHHSCTTC
T ss_pred HHHhcC----------------------------CCCCEEcCCCCCCcC----------------hHHHHHHHHhcccCC
Confidence 223344 45555555544 321 011222233344 55
Q ss_pred cEEEEeeec--CCCCccCchhhhcCCCccEEEeecCCCCCC--CCCCCCCccccceecccccccccccccccCCCCCCCC
Q 044247 159 KELHIHEYR--GRRNVVPKNWVMSLTNLRVLHLFECRNCEH--LPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDG 234 (333)
Q Consensus 159 ~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 234 (333)
+.|++++|. .....+ +..+..+++|+.|++++|..+++ ++.++.+++|++|++++|..+... . ...
T Consensus 198 ~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~-~~~------ 267 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE--T-LLE------ 267 (336)
T ss_dssp CEEECCSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG--G-GGG------
T ss_pred CEEEeCCCcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH--H-HHH------
Confidence 555555553 111113 44455677777777777753332 333666677777777777522211 1 111
Q ss_pred CccccCCCccEEeeccC
Q 044247 235 SSVIAFPKLKRLRFWSM 251 (333)
Q Consensus 235 ~~~~~l~~L~~L~l~~~ 251 (333)
+..+++|++|++++|
T Consensus 268 --l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 268 --LGEIPTLKTLQVFGI 282 (336)
T ss_dssp --GGGCTTCCEEECTTS
T ss_pred --HhcCCCCCEEeccCc
Confidence 456778888888876
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=4e-17 Score=155.15 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=27.8
Q ss_pred cCCCcceEecccCcCcc-cCCcccCCCCCcceEEEcccCh
Q 044247 269 IMPRLSSLSIQSCRELK-ALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 269 ~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
.+++|++|++++|..-. .++..+..+++|+.|++ ++|+
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l-~~n~ 499 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM-RGCC 499 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE-ESCC
T ss_pred hCccceEeeccCCCCCHHHHHHHHhcCcccCeeec-cCCC
Confidence 47888888888765322 34445567899999999 9997
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=4.8e-17 Score=145.31 Aligned_cols=250 Identities=11% Similarity=0.039 Sum_probs=158.3
Q ss_pred ccchhcCCCcccEEeecCCCcccccC-----ccccccc-cccEEecCCCCCccc-cccccccc-----ccCceeeeEEEc
Q 044247 4 LPETLCELYNLERVNVSGCSHLRELP-----QGIGKLR-KLMYLDNDYTDSLRY-LPVGIGEL-----IRLRRVTKFVVC 71 (333)
Q Consensus 4 lp~~l~~l~~L~~L~l~~~~~~~~lp-----~~i~~l~-~L~~L~l~~~~~~~~-~p~~i~~l-----~~L~~L~l~~~~ 71 (333)
+|..+...++|++|++++|. +...+ ..+..++ +|++|++++| .+.. .+..+..+ ++|++|++++|.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 45556666779999999998 55444 5677888 8999999999 4444 34445554 899999999988
Q ss_pred CccCCCCCccc----cccC-ccCceeEecCCCCCCChhhHHHHhhccc-CCccceEEeecCCCCCchhhhcccCCccccc
Q 044247 72 GGYDRACSLGS----LKKL-NLLRQCSIDGLGGVSDAGEARRAELEKK-KNLFDLELDFDNLRDGDEEQAGRRENEEDED 145 (333)
Q Consensus 72 ~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (333)
... ..... +..+ ++|+.|++....--......+...+..+ ++|++|++++|.+.+. ..
T Consensus 92 l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------------~~ 155 (362)
T 3goz_A 92 LSY---KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------------SS 155 (362)
T ss_dssp GGG---SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-------------CH
T ss_pred CCh---HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-------------HH
Confidence 653 22332 3444 7888888876442222223333445553 6999999999864321 11
Q ss_pred ccccccCCCCC-CccEEEEeeecCCCCccCchh----hhcC-CCccEEEeecCCCCCC-----CCC-CCC-Cccccceec
Q 044247 146 ERLLDALGPPP-NLKELHIHEYRGRRNVVPKNW----VMSL-TNLRVLHLFECRNCEH-----LPP-LGK-LTSLEDLYI 212 (333)
Q Consensus 146 ~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~-----l~~-~~~-l~~L~~L~l 212 (333)
..+...+...+ +|+.|++++|.... ..+.. +..+ ++|+.|++++|. ++. ++. +.. .++|++|++
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLAS--KNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGG--SCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHhcCCccccEeeecCCCCch--hhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEEC
Confidence 23344444554 89999999987665 31333 3345 599999999984 443 222 322 358999999
Q ss_pred ccccccccccccccCCCCCCCCCccccCCCccEEeeccCcccccccc--CCccccccccCCCcceEecccCcC
Q 044247 213 AGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDL--GTAIKGEIIIMPRLSSLSIQSCRE 283 (333)
Q Consensus 213 ~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~--~~~~~~~~~~~~~L~~L~l~~c~~ 283 (333)
++|. +...+...+... ...+++|++|++++|. +..+.. ...++..+..+++|++|++++++.
T Consensus 233 s~N~-l~~~~~~~l~~~-------~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 233 CLNC-LHGPSLENLKLL-------KDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CSSC-CCCCCHHHHHHT-------TTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred cCCC-CCcHHHHHHHHH-------HhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 9987 554432211110 4677899999999863 222220 111233445778899999998653
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=1.9e-15 Score=143.26 Aligned_cols=174 Identities=20% Similarity=0.174 Sum_probs=137.9
Q ss_pred hcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLN 87 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 87 (333)
+..+.+|+.|++++|. +..+|. +..+++|+.|++++| .+..++. +..+++|+.|++++|.... ++.+..++
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~-----l~~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKD-----LSSLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCC-----CTTSTTCT
T ss_pred hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCC-----ChhhccCC
Confidence 5678899999999998 777774 889999999999998 5566665 8899999999999887753 34678888
Q ss_pred cCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeec
Q 044247 88 LLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYR 167 (333)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (333)
+|+.|++....- ... ..+..+++|+.|++++|.+. .+ ..+..+++|+.|++++|.
T Consensus 110 ~L~~L~Ls~N~l-~~l-----~~l~~l~~L~~L~Ls~N~l~------------------~l-~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 110 KLKSLSLEHNGI-SDI-----NGLVHLPQLESLYLGNNKIT------------------DI-TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp TCCEEECTTSCC-CCC-----GGGGGCTTCSEEECCSSCCC------------------CC-GGGGSCTTCSEEECCSSC
T ss_pred CCCEEEecCCCC-CCC-----ccccCCCccCEEECCCCccC------------------Cc-hhhcccCCCCEEECcCCc
Confidence 999988876432 221 24778899999999998532 22 567788999999999988
Q ss_pred CCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccc
Q 044247 168 GRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRV 221 (333)
Q Consensus 168 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i 221 (333)
... + +. +..+++|+.|+|++| .+..++.+..+++|+.|++++|. +...
T Consensus 165 l~~--~-~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~-l~~~ 212 (605)
T 1m9s_A 165 ISD--I-VP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE-CLNK 212 (605)
T ss_dssp CCC--C-GG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE-EECC
T ss_pred CCC--c-hh-hccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc-CcCC
Confidence 877 5 44 778999999999998 56667778889999999999987 4433
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=9.7e-17 Score=143.33 Aligned_cols=262 Identities=10% Similarity=0.035 Sum_probs=170.7
Q ss_pred EEeecCCCcccccCccccccccccEEecCCCCCccccc-----ccccccc-cCceeeeEEEcCccCCCCCccccccC---
Q 044247 16 RVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLP-----VGIGELI-RLRRVTKFVVCGGYDRACSLGSLKKL--- 86 (333)
Q Consensus 16 ~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-----~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~l--- 86 (333)
++.++.+...+.+|..+...++|++|++++| .+...+ ..+..++ +|++|++++|.... ..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGF---KNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG---SCHHHHHHHHHT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCH---HHHHHHHHHHhc
Confidence 4567788755567776666677999999999 455554 4567788 89999999987763 334445443
Q ss_pred --ccCceeEecCCCCCCChhhHHHHhhccc-CCccceEEeecCCCCCchhhhcccCCcccccccccccCCC-CCCccEEE
Q 044247 87 --NLLRQCSIDGLGGVSDAGEARRAELEKK-KNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGP-PPNLKELH 162 (333)
Q Consensus 87 --~~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~ 162 (333)
++|+.|++....--......+...+..+ ++|++|++++|.+.+. ....+...+.. .++|+.|+
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------------~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-------------SSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-------------CHHHHHHHHTTSCTTCCEEE
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH-------------HHHHHHHHHHhCCCceeEEE
Confidence 8899998876543222333444556666 8999999999974322 11223334455 36999999
Q ss_pred EeeecCCCCc---cCchhhhcCC-CccEEEeecCCCCCCCCC------CCCC-ccccceecccccccccccccccCCCCC
Q 044247 163 IHEYRGRRNV---VPKNWVMSLT-NLRVLHLFECRNCEHLPP------LGKL-TSLEDLYIAGMKSVKRVGNEFLGVESD 231 (333)
Q Consensus 163 l~~~~~~~~~---~~~~~~~~~~-~L~~L~l~~~~~~~~l~~------~~~l-~~L~~L~l~~~~~l~~i~~~~~~~~~~ 231 (333)
+++|...... + +..+..++ +|+.|++++|. ++.... +..+ ++|++|++++|. +.......+...
T Consensus 145 Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~-- 219 (362)
T 3goz_A 145 LRGNDLGIKSSDEL-IQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYI-- 219 (362)
T ss_dssp CTTSCGGGSCHHHH-HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHH--
T ss_pred ccCCcCCHHHHHHH-HHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHH--
Confidence 9998766310 2 33344555 99999999994 433321 3344 599999999998 554211101000
Q ss_pred CCCCcccc-CCCccEEeeccCccccccccCCccccccccCCCcceEecccCcC-------cccCCcccCCCCCcceEEEc
Q 044247 232 TDGSSVIA-FPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRE-------LKALPDHLLQKSTLQNLEIW 303 (333)
Q Consensus 232 ~~~~~~~~-l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-------l~~l~~~~~~l~~L~~L~l~ 303 (333)
+.. .++|++|+++++ .+.+.... .+...+..+++|+.|++++|.. +..++..+..+++|+.|++
T Consensus 220 -----l~~~~~~L~~L~Ls~N-~l~~~~~~-~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL- 291 (362)
T 3goz_A 220 -----FSSIPNHVVSLNLCLN-CLHGPSLE-NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK- 291 (362)
T ss_dssp -----HHHSCTTCCEEECCSS-CCCCCCHH-HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT-
T ss_pred -----HhcCCCCceEEECcCC-CCCcHHHH-HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec-
Confidence 223 459999999996 44443211 1123345789999999999761 2334456667889999999
Q ss_pred ccCh
Q 044247 304 GACH 307 (333)
Q Consensus 304 ~~c~ 307 (333)
++++
T Consensus 292 ~~N~ 295 (362)
T 3goz_A 292 NGKE 295 (362)
T ss_dssp TSCB
T ss_pred CCCc
Confidence 8765
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=4.2e-15 Score=129.83 Aligned_cols=205 Identities=12% Similarity=0.027 Sum_probs=147.1
Q ss_pred CCCcccEEeecCCCcccccCccc--cccccccEEecCCCCCccccc----ccccccccCceeeeEEEcCccCCCCCcccc
Q 044247 10 ELYNLERVNVSGCSHLRELPQGI--GKLRKLMYLDNDYTDSLRYLP----VGIGELIRLRRVTKFVVCGGYDRACSLGSL 83 (333)
Q Consensus 10 ~l~~L~~L~l~~~~~~~~lp~~i--~~l~~L~~L~l~~~~~~~~~p----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 83 (333)
.+++|++|++++|...+..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|... ...+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~~ 165 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP---AFSCEQV 165 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC---CCCTTSC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc---hhhHHHh
Confidence 35679999999999667788877 889999999999995433322 23457899999999999875 4455677
Q ss_pred ccCccCceeEecCCCCCCChhhHH--HHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccc-cCCCCCCccE
Q 044247 84 KKLNLLRQCSIDGLGGVSDAGEAR--RAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLD-ALGPPPNLKE 160 (333)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~ 160 (333)
..+++|+.|++....-... ... ...+..+++|++|++++|.+.. ...... .+..+++|+.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGE--RGLMAALCPHKFPAIQNLALRNTGMET---------------PTGVCAALAAAGVQPHS 228 (310)
T ss_dssp CCCTTCCEEECCSCTTCHH--HHHHTTSCTTSSCCCCSCBCCSSCCCC---------------HHHHHHHHHHHTCCCSS
T ss_pred ccCCCCCEEECCCCCCccc--hhhhHHHhhhcCCCCCEEECCCCCCCc---------------hHHHHHHHHhcCCCCCE
Confidence 8899999998876432110 111 1123578899999999996431 111112 2356789999
Q ss_pred EEEeeecCCCCccCchhhhcC---CCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCcc
Q 044247 161 LHIHEYRGRRNVVPKNWVMSL---TNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSV 237 (333)
Q Consensus 161 L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~ 237 (333)
|++++|.... ..|..+..+ ++|++|++++| .++.+|..- +++|+.|++++|. ++.++. .
T Consensus 229 L~Ls~N~l~~--~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~-l~~~~~-------------~ 290 (310)
T 4glp_A 229 LDLSHNSLRA--TVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNR-LNRAPQ-------------P 290 (310)
T ss_dssp EECTTSCCCC--CCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCC-CCSCCC-------------T
T ss_pred EECCCCCCCc--cchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCc-CCCCch-------------h
Confidence 9999988766 324445544 79999999999 455666522 3899999999998 655532 4
Q ss_pred ccCCCccEEeeccCc
Q 044247 238 IAFPKLKRLRFWSMS 252 (333)
Q Consensus 238 ~~l~~L~~L~l~~~~ 252 (333)
..+++|+.|++++++
T Consensus 291 ~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 291 DELPEVDNLTLDGNP 305 (310)
T ss_dssp TSCCCCSCEECSSTT
T ss_pred hhCCCccEEECcCCC
Confidence 578999999999853
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=2.6e-14 Score=120.92 Aligned_cols=174 Identities=21% Similarity=0.217 Sum_probs=95.0
Q ss_pred CcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCce
Q 044247 12 YNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQ 91 (333)
Q Consensus 12 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 91 (333)
...++++++++. +..+|..+. ++++.|++++|......+..+..+++|++|++++|.... .....+..++
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~---- 83 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT---LSAGVFDDLT---- 83 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC---CCTTTTTTCT----
T ss_pred CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc---cCHhHhccCC----
Confidence 457788888887 777887655 688888888884333334457788888888887766542 2222233444
Q ss_pred eEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCC
Q 044247 92 CSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRN 171 (333)
Q Consensus 92 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 171 (333)
+|++|++++|.+. ......+..+++|+.|++++|....
T Consensus 84 ------------------------~L~~L~L~~n~l~-----------------~~~~~~~~~l~~L~~L~L~~N~l~~- 121 (251)
T 3m19_A 84 ------------------------ELGTLGLANNQLA-----------------SLPLGVFDHLTQLDKLYLGGNQLKS- 121 (251)
T ss_dssp ------------------------TCCEEECTTSCCC-----------------CCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred ------------------------cCCEEECCCCccc-----------------ccChhHhcccCCCCEEEcCCCcCCC-
Confidence 4444555444311 1112234445555555555555444
Q ss_pred ccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeec
Q 044247 172 VVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFW 249 (333)
Q Consensus 172 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 249 (333)
+++..+..+++|+.|++++| .+..++. ++.+++|+.|++++|. ++.++... +..+++|+.|++.
T Consensus 122 -~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----------~~~l~~L~~L~l~ 187 (251)
T 3m19_A 122 -LPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGA-----------FDRLGKLQTITLF 187 (251)
T ss_dssp -CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT-----------TTTCTTCCEEECC
T ss_pred -cChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCHHH-----------HhCCCCCCEEEee
Confidence 42223445556666666655 3333333 4555566666666554 33333221 3355566666665
Q ss_pred cC
Q 044247 250 SM 251 (333)
Q Consensus 250 ~~ 251 (333)
++
T Consensus 188 ~N 189 (251)
T 3m19_A 188 GN 189 (251)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=3e-14 Score=123.23 Aligned_cols=169 Identities=20% Similarity=0.250 Sum_probs=124.3
Q ss_pred ccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCceeEecCCCCCCChhhHHHHhh
Q 044247 32 IGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAEL 111 (333)
Q Consensus 32 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 111 (333)
...+++|+.|++++| .+..++ .++.+++|++|++++|.... ... +..+++|+.|++.... +... ..+
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l~~----~~~-l~~l~~L~~L~l~~n~-l~~~-----~~l 108 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTD----IKP-LANLKNLGWLFLDENK-VKDL-----SSL 108 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCC----CGG-GTTCTTCCEEECCSSC-CCCG-----GGG
T ss_pred hhhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCccCC----Ccc-cccCCCCCEEECCCCc-CCCC-----hhh
Confidence 567889999999998 566665 48889999999998887653 222 7788888888876533 2221 236
Q ss_pred cccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeec
Q 044247 112 EKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFE 191 (333)
Q Consensus 112 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 191 (333)
..+++|++|++++|.+. .+ ..+..+++|+.|++++|.... + ..+..+++|+.|++++
T Consensus 109 ~~l~~L~~L~L~~n~i~------------------~~-~~l~~l~~L~~L~l~~n~l~~--~--~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGIS------------------DI-NGLVHLPQLESLYLGNNKITD--I--TVLSRLTKLDTLSLED 165 (291)
T ss_dssp TTCTTCCEEECTTSCCC------------------CC-GGGGGCTTCCEEECCSSCCCC--C--GGGGGCTTCSEEECCS
T ss_pred ccCCCCCEEECCCCcCC------------------CC-hhhcCCCCCCEEEccCCcCCc--c--hhhccCCCCCEEEccC
Confidence 77888888888888532 21 346667888888888888776 3 4577788888888888
Q ss_pred CCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccC
Q 044247 192 CRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSM 251 (333)
Q Consensus 192 ~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 251 (333)
| .+..+++++.+++|+.|++++|. ++.++. +..+++|+.|+++++
T Consensus 166 N-~l~~~~~l~~l~~L~~L~L~~N~-i~~l~~-------------l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 166 N-QISDIVPLAGLTKLQNLYLSKNH-ISDLRA-------------LAGLKNLDVLELFSQ 210 (291)
T ss_dssp S-CCCCCGGGTTCTTCCEEECCSSC-CCBCGG-------------GTTCTTCSEEEEEEE
T ss_pred C-ccccchhhcCCCccCEEECCCCc-CCCChh-------------hccCCCCCEEECcCC
Confidence 8 45556567888888888888886 555532 567888888888875
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=5.7e-14 Score=118.80 Aligned_cols=162 Identities=20% Similarity=0.259 Sum_probs=110.3
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCCC
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRACS 79 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~ 79 (333)
++.+|..+. +++++|++++|......+..+..+++|++|++++| .+..+ +..+..+++|++|++++|.... ..
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~ 99 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLAS---LP 99 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCC---CC
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccc---cC
Confidence 356777666 68999999999944555667999999999999999 44554 4457899999999998776542 11
Q ss_pred ccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCcc
Q 044247 80 LGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLK 159 (333)
Q Consensus 80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 159 (333)
.. .+..+++|++|++++|.+. ......+..+++|+
T Consensus 100 ~~----------------------------~~~~l~~L~~L~L~~N~l~-----------------~~~~~~~~~l~~L~ 134 (251)
T 3m19_A 100 LG----------------------------VFDHLTQLDKLYLGGNQLK-----------------SLPSGVFDRLTKLK 134 (251)
T ss_dssp TT----------------------------TTTTCTTCCEEECCSSCCC-----------------CCCTTTTTTCTTCC
T ss_pred hh----------------------------HhcccCCCCEEEcCCCcCC-----------------CcChhHhccCCccc
Confidence 11 2334456666666666421 11123355667777
Q ss_pred EEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceeccccc
Q 044247 160 ELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 160 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~ 216 (333)
.|++++|.... +++..+..+++|+.|++++|. +..+++ +..+++|+.|++++|+
T Consensus 135 ~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 135 ELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEECcCCcCCc--cCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 77777776665 523356677788888888773 444443 6677788888888776
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=1.1e-15 Score=145.25 Aligned_cols=280 Identities=15% Similarity=0.049 Sum_probs=142.5
Q ss_pred ccchhcCCCcccEEeecCCC-cc--cccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcC--------
Q 044247 4 LPETLCELYNLERVNVSGCS-HL--RELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCG-------- 72 (333)
Q Consensus 4 lp~~l~~l~~L~~L~l~~~~-~~--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~-------- 72 (333)
++.....+++|++|++++|. .+ ..++..+..+++|++|++++|..+..++..+..+++|++|++..+..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 33444467788999988885 11 22333345578888888888855555666566677777776443311
Q ss_pred ------------------cc-CCCCCccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchh
Q 044247 73 ------------------GY-DRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEE 133 (333)
Q Consensus 73 ------------------~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 133 (333)
.. .....+..+..+++|+.|++.... +. .......+..+++|++|++.+| +.+....
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~ 331 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDY-IEDAGLE 331 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCc-cCHHHHH
Confidence 00 000111122356677777776654 32 2233344556677777777665 1100000
Q ss_pred hhc-----cc-------------CCcccccccccccC-CCCCCccEEEEeeecCCCCccCchhhh-cCCCccEEEee---
Q 044247 134 QAG-----RR-------------ENEEDEDERLLDAL-GPPPNLKELHIHEYRGRRNVVPKNWVM-SLTNLRVLHLF--- 190 (333)
Q Consensus 134 ~~~-----~~-------------~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~--- 190 (333)
... +. ..+. ........+ ..+++|+.|.++.+..... . ...+. .+++|+.|+++
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~-l~~~~l~~l~~~~~~L~~L~~~~~~l~~~-~-~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVA-LTEQGLVSVSMGCPKLESVLYFCRQMTNA-A-LITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSC-CCHHHHHHHHHHCTTCCEEEEEESCCCHH-H-HHHHHHHCTTCCEEEEEESS
T ss_pred HHHHhCCCCCEEEEecCcccccccCCC-CCHHHHHHHHHhchhHHHHHHhcCCcCHH-H-HHHHHhhCCCcceeEeeccc
Confidence 000 00 0000 000001111 1245666665444333220 0 11222 46777777777
Q ss_pred --cCCCCCCCCC-------CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCC
Q 044247 191 --ECRNCEHLPP-------LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGT 261 (333)
Q Consensus 191 --~~~~~~~l~~-------~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~ 261 (333)
+|..++..|. +..+++|+.|+++++ +........ ...+++|+.|++++|. +.+.
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~--l~~~~~~~l----------~~~~~~L~~L~L~~~~-i~~~---- 471 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYI----------GTYAKKMEMLSVAFAG-DSDL---- 471 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS--CCHHHHHHH----------HHHCTTCCEEEEESCC-SSHH----
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecCc--ccHHHHHHH----------HHhchhccEeeccCCC-CcHH----
Confidence 3444443332 344567777777551 222111100 1236778888887764 2111
Q ss_pred ccccccccCCCcceEecccCcCccc-CCcccCCCCCcceEEEcccChh
Q 044247 262 AIKGEIIIMPRLSSLSIQSCRELKA-LPDHLLQKSTLQNLEIWGACHI 308 (333)
Q Consensus 262 ~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~~c~~ 308 (333)
++......+++|++|++++|+.-.. +......+++|+.|++ ++|+.
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l-~~~~~ 518 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM-SSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE-ESSCC
T ss_pred HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee-eCCCC
Confidence 1111224689999999999886222 2224455889999999 99975
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=2.7e-16 Score=149.40 Aligned_cols=116 Identities=13% Similarity=0.006 Sum_probs=62.7
Q ss_pred cCCCcccEEeecCCCcccccCcccc-ccccccEEecCCCCCccc--ccccccccccCceeeeEEEcCccCCCCCccc-cc
Q 044247 9 CELYNLERVNVSGCSHLRELPQGIG-KLRKLMYLDNDYTDSLRY--LPVGIGELIRLRRVTKFVVCGGYDRACSLGS-LK 84 (333)
Q Consensus 9 ~~l~~L~~L~l~~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-l~ 84 (333)
..+++|++|++++|......+..+. .+++|++|++++|..+.. ++.....+++|++|++.+|............ ..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3566777777777763334444454 577777777777744333 3333446777777777766533100011111 22
Q ss_pred cCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeec
Q 044247 85 KLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFD 125 (333)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 125 (333)
.+++|+.|++..... .............+++|++|++.+|
T Consensus 182 ~~~~L~~L~l~~~~~-~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLAS-EVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCCS-CCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccCC-cCCHHHHHHHHHhCCCCcEEecCCC
Confidence 455677777765441 1111223333445677777777766
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=6.1e-14 Score=114.11 Aligned_cols=151 Identities=15% Similarity=0.215 Sum_probs=89.2
Q ss_pred cccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCceeEecCCCCCCChhhHHHHhhc
Q 044247 33 GKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELE 112 (333)
Q Consensus 33 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 112 (333)
+.+++|++|++++| .+..+| ++..+++|++|++.+|... .+..+..+++|+.|++....- . ......+.
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~-----~~~~l~~l~~L~~L~l~~n~l-~---~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHAT-----NYNPISGLSNLERLRIMGKDV-T---SDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCS-----CCGGGTTCTTCCEEEEECTTC-B---GGGSCCCT
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCC-----cchhhhcCCCCCEEEeECCcc-C---cccChhhc
Confidence 34445555555544 333444 3444555555555444222 223444445555544443211 0 00112345
Q ss_pred ccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeec-CCCCccCchhhhcCCCccEEEeec
Q 044247 113 KKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYR-GRRNVVPKNWVMSLTNLRVLHLFE 191 (333)
Q Consensus 113 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~ 191 (333)
.+++|++|++++|. .....+..+..+++|+.|++++|. ... + + .+..+++|+.|++++
T Consensus 110 ~l~~L~~L~Ls~n~-----------------i~~~~~~~l~~l~~L~~L~L~~n~~i~~--~-~-~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 110 GLTSLTLLDISHSA-----------------HDDSILTKINTLPKVNSIDLSYNGAITD--I-M-PLKTLPELKSLNIQF 168 (197)
T ss_dssp TCTTCCEEECCSSB-----------------CBGGGHHHHTTCSSCCEEECCSCTBCCC--C-G-GGGGCSSCCEEECTT
T ss_pred CCCCCCEEEecCCc-----------------cCcHhHHHHhhCCCCCEEEccCCCCccc--c-H-hhcCCCCCCEEECCC
Confidence 56778888888775 223345566777888888888887 555 4 4 577888999999988
Q ss_pred CCCCCCCCCCCCCccccceeccccc
Q 044247 192 CRNCEHLPPLGKLTSLEDLYIAGMK 216 (333)
Q Consensus 192 ~~~~~~l~~~~~l~~L~~L~l~~~~ 216 (333)
| .+.+++.+..+++|++|++++|+
T Consensus 169 n-~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 169 D-GVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp B-CCCCCTTGGGCSSCCEEEECBC-
T ss_pred C-CCcChHHhccCCCCCEEEeeCcc
Confidence 8 45667778888899999998886
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=1.6e-14 Score=136.83 Aligned_cols=187 Identities=19% Similarity=0.234 Sum_probs=137.0
Q ss_pred cccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCcee
Q 044247 13 NLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQC 92 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 92 (333)
++..+.+..+. +..+.. +..+++|+.|++++| .+..++ .++.+++|+.|++++|.... .+ .+..+++|+.|
T Consensus 22 ~l~~l~l~~~~-i~~~~~-~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~----~~-~l~~l~~L~~L 92 (605)
T 1m9s_A 22 ETIKDNLKKKS-VTDAVT-QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTD----IK-PLTNLKNLGWL 92 (605)
T ss_dssp HHHHHHTTCSC-TTSEEC-HHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCC----CG-GGGGCTTCCEE
T ss_pred HHHHHhccCCC-cccccc-hhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCC----Ch-hhccCCCCCEE
Confidence 34445555554 333333 567899999999998 566766 48899999999999887653 22 27888889998
Q ss_pred EecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCc
Q 044247 93 SIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNV 172 (333)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 172 (333)
.+.... +... ..+..+++|+.|++++|.+. . ...+..+++|+.|++++|....
T Consensus 93 ~Ls~N~-l~~l-----~~l~~l~~L~~L~Ls~N~l~------------------~-l~~l~~l~~L~~L~Ls~N~l~~-- 145 (605)
T 1m9s_A 93 FLDENK-IKDL-----SSLKDLKKLKSLSLEHNGIS------------------D-INGLVHLPQLESLYLGNNKITD-- 145 (605)
T ss_dssp ECCSSC-CCCC-----TTSTTCTTCCEEECTTSCCC------------------C-CGGGGGCTTCSEEECCSSCCCC--
T ss_pred ECcCCC-CCCC-----hhhccCCCCCEEEecCCCCC------------------C-CccccCCCccCEEECCCCccCC--
Confidence 886543 2221 24677889999999988542 2 2346678899999999988777
Q ss_pred cCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCc
Q 044247 173 VPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMS 252 (333)
Q Consensus 173 ~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 252 (333)
+ ..+..+++|+.|+|++| .+..+++++.+++|+.|++++|. +..++. +..+++|+.|++++|+
T Consensus 146 l--~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-i~~l~~-------------l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 146 I--TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNH-ISDLRA-------------LAGLKNLDVLELFSQE 208 (605)
T ss_dssp C--GGGGSCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCGG-------------GTTCTTCSEEECCSEE
T ss_pred c--hhhcccCCCCEEECcCC-cCCCchhhccCCCCCEEECcCCC-CCCChH-------------HccCCCCCEEEccCCc
Confidence 4 55778999999999998 45555558889999999999987 555532 5688899999998853
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=1.8e-13 Score=111.34 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=116.6
Q ss_pred ccccccCceeeeEEEcCccCCCCCccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhh
Q 044247 56 IGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQA 135 (333)
Q Consensus 56 i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 135 (333)
.+.+++|++|++.++.... .+ .+..+++|+.|++... .+... ..+..+++|++|++++|.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~----l~-~l~~l~~L~~L~l~~n-~~~~~-----~~l~~l~~L~~L~l~~n~--------- 99 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTD----LT-GIEYAHNIKDLTINNI-HATNY-----NPISGLSNLERLRIMGKD--------- 99 (197)
T ss_dssp HHHHHTCCEEEEESSCCSC----CT-TGGGCTTCSEEEEESC-CCSCC-----GGGTTCTTCCEEEEECTT---------
T ss_pred hhhcCCccEEeccCCCccC----hH-HHhcCCCCCEEEccCC-CCCcc-----hhhhcCCCCCEEEeECCc---------
Confidence 4678999999999887653 23 6788889999888765 32222 257778999999999985
Q ss_pred cccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccc
Q 044247 136 GRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGM 215 (333)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~ 215 (333)
.....+..+..+++|+.|++++|..... . +..+..+++|+.|++++|..++.++.++.+++|+.|++++|
T Consensus 100 --------l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~-~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 100 --------VTSDKIPNLSGLTSLTLLDISHSAHDDS-I-LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169 (197)
T ss_dssp --------CBGGGSCCCTTCTTCCEEECCSSBCBGG-G-HHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB
T ss_pred --------cCcccChhhcCCCCCCEEEecCCccCcH-h-HHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC
Confidence 3334566788889999999999887651 3 66778899999999999965777888888899999999988
Q ss_pred cccccccccccCCCCCCCCCccccCCCccEEeeccC
Q 044247 216 KSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSM 251 (333)
Q Consensus 216 ~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 251 (333)
. +..++. +..+++|+.|++.++
T Consensus 170 ~-i~~~~~-------------l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 170 G-VHDYRG-------------IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp C-CCCCTT-------------GGGCSSCCEEEECBC
T ss_pred C-CcChHH-------------hccCCCCCEEEeeCc
Confidence 7 555431 567888888888874
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=2.6e-14 Score=121.70 Aligned_cols=167 Identities=22% Similarity=0.202 Sum_probs=111.3
Q ss_pred CCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccC
Q 044247 10 ELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLL 89 (333)
Q Consensus 10 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L 89 (333)
.+.++..+++.++. +..++ .+..+++|+.|++++| .+..++ .++.+++|++|++++|.... .+. +..+++|
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~----~~~-l~~l~~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISD----LSP-LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCC----CGG-GTTCSSC
T ss_pred HHHHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCC----Chh-hccCCCC
Confidence 35556666677666 55555 3677777888888777 556665 57777778888777776553 222 6666777
Q ss_pred ceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCC
Q 044247 90 RQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGR 169 (333)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 169 (333)
+.|++....- .... .+.. ++|++|++++|.+. .+ ..+..+++|+.|++++|...
T Consensus 88 ~~L~L~~N~l-~~l~-----~~~~-~~L~~L~L~~N~l~------------------~~-~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 88 EELSVNRNRL-KNLN-----GIPS-ACLSRLFLDNNELR------------------DT-DSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CEEECCSSCC-SCCT-----TCCC-SSCCEEECCSSCCS------------------BS-GGGTTCTTCCEEECTTSCCC
T ss_pred CEEECCCCcc-CCcC-----cccc-CcccEEEccCCccC------------------CC-hhhcCcccccEEECCCCcCC
Confidence 7766654221 1110 1222 67888888888532 22 34677788888888888877
Q ss_pred CCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceeccccc
Q 044247 170 RNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMK 216 (333)
Q Consensus 170 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~ 216 (333)
. + + .+..+++|+.|++++| .+..++.++.+++|+.|++++|.
T Consensus 142 ~--~-~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 142 S--I-V-MLGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp B--C-G-GGGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred C--C-h-HHccCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence 6 5 4 5777888888888888 44455667788888888888887
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=2.8e-13 Score=127.19 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=111.1
Q ss_pred cccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCcee
Q 044247 13 NLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQC 92 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 92 (333)
+|++|++++|. +..+|..+. ++|++|++++| .+..+| ..+++|++|++++|.+.. .+. +.. +|+.|
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~----ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDNRLST----LPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSC----CCC-CCT--TCCEE
T ss_pred CccEEEeCCCC-CCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCC----cch-hhc--CCCEE
Confidence 88999999887 666887663 78999999888 566777 457888999888887653 222 332 66666
Q ss_pred EecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCc
Q 044247 93 SIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNV 172 (333)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 172 (333)
++.... +..... .+++|+.|++++|.+. .++. .+++|+.|++++|....
T Consensus 126 ~Ls~N~-l~~lp~-------~l~~L~~L~Ls~N~l~------------------~lp~---~l~~L~~L~Ls~N~L~~-- 174 (571)
T 3cvr_A 126 DVDNNQ-LTMLPE-------LPALLEYINADNNQLT------------------MLPE---LPTSLEVLSVRNNQLTF-- 174 (571)
T ss_dssp ECCSSC-CSCCCC-------CCTTCCEEECCSSCCS------------------CCCC---CCTTCCEEECCSSCCSC--
T ss_pred ECCCCc-CCCCCC-------cCccccEEeCCCCccC------------------cCCC---cCCCcCEEECCCCCCCC--
Confidence 665421 111111 3567777777777432 2222 34677777777777666
Q ss_pred cCchhhhcCCCccEEEeecCCCCCCCCCCCCCccc-------cceecccccccccccccccCCCCCCCCCccccCCCccE
Q 044247 173 VPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSL-------EDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKR 245 (333)
Q Consensus 173 ~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L-------~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~ 245 (333)
+ |. +. ++|+.|++++| .++.+|.+.. +| +.|++++|. ++.+|.. +..+++|+.
T Consensus 175 l-p~-l~--~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~------------l~~l~~L~~ 234 (571)
T 3cvr_A 175 L-PE-LP--ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCRENR-ITHIPEN------------ILSLDPTCT 234 (571)
T ss_dssp C-CC-CC--TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSSC-CCCCCGG------------GGGSCTTEE
T ss_pred c-ch-hh--CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCCc-ceecCHH------------HhcCCCCCE
Confidence 5 55 43 77777777777 4445555322 55 777777776 5566554 345677777
Q ss_pred EeeccCc
Q 044247 246 LRFWSMS 252 (333)
Q Consensus 246 L~l~~~~ 252 (333)
|++++++
T Consensus 235 L~L~~N~ 241 (571)
T 3cvr_A 235 IILEDNP 241 (571)
T ss_dssp EECCSSS
T ss_pred EEeeCCc
Confidence 7777753
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=2e-15 Score=142.10 Aligned_cols=120 Identities=21% Similarity=0.248 Sum_probs=70.8
Q ss_pred CccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCC
Q 044247 157 NLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGS 235 (333)
Q Consensus 157 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 235 (333)
.|+.|++++|.... + |. +..+++|+.|++++| .+..+|. ++.+++|+.|++++|. ++.+| .
T Consensus 442 ~L~~L~Ls~n~l~~--l-p~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~----------- 503 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--L-CH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVD-G----------- 503 (567)
T ss_dssp TCSEEECTTSCCSS--C-CC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-----------
T ss_pred CceEEEecCCCCCC--C-cC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCc-c-----------
Confidence 36667776666665 5 54 666777777777776 3445554 6666777777777765 44444 1
Q ss_pred ccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCccc----CCCCCcceEE
Q 044247 236 SVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHL----LQKSTLQNLE 301 (333)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~ 301 (333)
+..+++|+.|+++++ .++.+. .|..+..+++|+.|+++++ .++.+|... ..+|+|+.|+
T Consensus 504 -l~~l~~L~~L~Ls~N-~l~~~~----~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 -VANLPRLQELLLCNN-RLQQSA----AIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GTTCSSCCEEECCSS-CCCSSS----TTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -cCCCCCCcEEECCCC-CCCCCC----CcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 456677777777764 332221 1445556777777777764 344444322 2266776665
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=2.2e-15 Score=141.92 Aligned_cols=205 Identities=15% Similarity=0.109 Sum_probs=114.4
Q ss_pred cccccccEEecCCCCCcccccccccccccCceeeeEEEcCcc----------CCCCCccccccCccCceeEecCCCCCCC
Q 044247 33 GKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGY----------DRACSLGSLKKLNLLRQCSIDGLGGVSD 102 (333)
Q Consensus 33 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~----------~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 102 (333)
..+++|+.|++++| .++.+|..++.+++|+.|++.++.... ..+..+..+..+++|+.|+.-....+..
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 44666777777766 556667667777777777664432100 0022233344444444443100000000
Q ss_pred hhhH--HHHhhcc--cCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhh
Q 044247 103 AGEA--RRAELEK--KKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWV 178 (333)
Q Consensus 103 ~~~~--~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 178 (333)
.... ....+.. ...|+.|++++|.+ ..++. +..+++|+.|++++|.... + |..+
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l------------------~~lp~-~~~l~~L~~L~Ls~N~l~~--l-p~~~ 482 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDL------------------TVLCH-LEQLLLVTHLDLSHNRLRA--L-PPAL 482 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCC------------------SSCCC-GGGGTTCCEEECCSSCCCC--C-CGGG
T ss_pred hhhhhhhcccccccCccCceEEEecCCCC------------------CCCcC-ccccccCcEeecCcccccc--c-chhh
Confidence 0000 0001111 12577777777742 23333 6667788888888877776 7 7777
Q ss_pred hcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccc--cccccCCCCCCCCCccccCCCccEEeeccCccccc
Q 044247 179 MSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRV--GNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEE 256 (333)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i--~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 256 (333)
+.+++|+.|++++| .++.+|.++.+++|+.|++++|. ++.+ |.. +..+++|+.|+++++ .++.
T Consensus 483 ~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~------------l~~l~~L~~L~L~~N-~l~~ 547 (567)
T 1dce_A 483 AALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNR-LQQSAAIQP------------LVSCPRLVLLNLQGN-SLCQ 547 (567)
T ss_dssp GGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGG------------GGGCTTCCEEECTTS-GGGG
T ss_pred hcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCCCC-CCCCCCcHH------------HhcCCCCCEEEecCC-cCCC
Confidence 77888888888887 44556677778888888888776 5544 333 567778888888874 3443
Q ss_pred cccCCccccccccCCCcceEe
Q 044247 257 WDLGTAIKGEIIIMPRLSSLS 277 (333)
Q Consensus 257 ~~~~~~~~~~~~~~~~L~~L~ 277 (333)
.+.. +...+..+|+|+.|+
T Consensus 548 ~~~~--~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 548 EEGI--QERLAEMLPSVSSIL 566 (567)
T ss_dssp SSSC--TTHHHHHCTTCSEEE
T ss_pred CccH--HHHHHHHCcccCccC
Confidence 3311 112233467777775
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=2.1e-12 Score=105.86 Aligned_cols=171 Identities=22% Similarity=0.192 Sum_probs=92.7
Q ss_pred cEEeecCCCcccccCccccccccccEEecCCCCCccccccc-ccccccCceeeeEEEcCccCCCCCccccccCccCceeE
Q 044247 15 ERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCS 93 (333)
Q Consensus 15 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 93 (333)
+.++..++. +..+|..+ .++|++|++++| .+..++.. ++.+++|++|++.+|.... .....+..+++|+.|+
T Consensus 10 ~~v~c~~~~-l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 10 TTVECYSQG-RTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQS---LPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEE
T ss_pred CEEEecCCC-ccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCc---cChhhcCCCCCcCEEE
Confidence 455555554 55555433 346777777776 34444433 4566677777766655432 1122234455555554
Q ss_pred ecCC--CCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCC
Q 044247 94 IDGL--GGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRN 171 (333)
Q Consensus 94 l~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 171 (333)
+... ..++. ..+..+++|++|++++|.+. ......+..+++|+.|++++|....
T Consensus 83 Ls~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~-----------------~~~~~~~~~l~~L~~L~l~~N~l~~- 138 (208)
T 2o6s_A 83 LSTNQLQSLPN------GVFDKLTQLKELALNTNQLQ-----------------SLPDGVFDKLTQLKDLRLYQNQLKS- 138 (208)
T ss_dssp CCSSCCCCCCT------TTTTTCTTCCEEECCSSCCC-----------------CCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCCCcCCccCH------hHhcCccCCCEEEcCCCcCc-----------------ccCHhHhccCCcCCEEECCCCccce-
Confidence 4321 11111 13455667777777766421 1112335566777777777776655
Q ss_pred ccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccc
Q 044247 172 VVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGN 223 (333)
Q Consensus 172 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~ 223 (333)
+++..+..+++|+.|++++|.. .+.+++|+.|+++.+.....+|.
T Consensus 139 -~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 139 -VPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp -CCTTTTTTCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHCTTTBBC
T ss_pred -eCHHHhccCCCccEEEecCCCe------ecCCCCHHHHHHHHHhCCceeec
Confidence 4233456677777777777732 24456677777776664444443
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=7.8e-13 Score=112.55 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=120.3
Q ss_pred CcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 2 EKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 2 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
+.++ .+..+++|++|++++|. +..++ .+..+++|++|++++| .+..++. ++.+++|++|++++|.... .+
T Consensus 32 ~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~-----l~ 101 (263)
T 1xeu_A 32 TDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKN-----LN 101 (263)
T ss_dssp TSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSC-----CT
T ss_pred cccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCC-----cC
Confidence 3455 57889999999999998 77888 5999999999999999 6677776 8999999999999998764 12
Q ss_pred ccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEE
Q 044247 82 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKEL 161 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 161 (333)
.+.. ++|+.|++.... +... ..+..+++|+.|++++|.+. .+ ..+..+++|+.|
T Consensus 102 ~~~~-~~L~~L~L~~N~-l~~~-----~~l~~l~~L~~L~Ls~N~i~------------------~~-~~l~~l~~L~~L 155 (263)
T 1xeu_A 102 GIPS-ACLSRLFLDNNE-LRDT-----DSLIHLKNLEILSIRNNKLK------------------SI-VMLGFLSKLEVL 155 (263)
T ss_dssp TCCC-SSCCEEECCSSC-CSBS-----GGGTTCTTCCEEECTTSCCC------------------BC-GGGGGCTTCCEE
T ss_pred cccc-CcccEEEccCCc-cCCC-----hhhcCcccccEEECCCCcCC------------------CC-hHHccCCCCCEE
Confidence 2333 788888887643 2222 24778899999999999642 22 257778999999
Q ss_pred EEeeecCCCCccCchhhhcCCCccEEEeecCC
Q 044247 162 HIHEYRGRRNVVPKNWVMSLTNLRVLHLFECR 193 (333)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 193 (333)
++++|.... ...+..+++|+.|++++|.
T Consensus 156 ~L~~N~i~~----~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 156 DLHGNEITN----TGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ECTTSCCCB----CTTSTTCCCCCEEEEEEEE
T ss_pred ECCCCcCcc----hHHhccCCCCCEEeCCCCc
Confidence 999998877 3557789999999999984
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=2.6e-12 Score=105.26 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=90.5
Q ss_pred hcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEee
Q 044247 111 LEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLF 190 (333)
Q Consensus 111 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 190 (333)
+..+++|++|++++|.+. ......+..+++|++|++++|.... +++..+..+++|+.|+++
T Consensus 48 ~~~l~~L~~L~l~~n~l~-----------------~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQ-----------------SLPNGVFNKLTSLTYLNLSTNQLQS--LPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TTTCTTCSEEECCSSCCC-----------------CCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECC
T ss_pred hcccccCcEEECCCCccC-----------------ccChhhcCCCCCcCEEECCCCcCCc--cCHhHhcCccCCCEEEcC
Confidence 344566777777766421 1112345667788888888777665 523445678888888888
Q ss_pred cCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccc
Q 044247 191 ECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEII 268 (333)
Q Consensus 191 ~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~ 268 (333)
+| .+..++. ++.+++|++|++++|. ++.++... +..+++|++|++++++ +. .
T Consensus 109 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~-----------~~~l~~L~~L~l~~N~------~~-------~ 162 (208)
T 2o6s_A 109 TN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGV-----------FDRLTSLQYIWLHDNP------WD-------C 162 (208)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT-----------TTTCTTCCEEECCSCC------BC-------C
T ss_pred CC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHH-----------hccCCCccEEEecCCC------ee-------c
Confidence 87 3445544 6778888888888876 55554432 3567788888888753 11 1
Q ss_pred cCCCcceEecccCcCcccCCcccCCCCC
Q 044247 269 IMPRLSSLSIQSCRELKALPDHLLQKST 296 (333)
Q Consensus 269 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~ 296 (333)
.+++|+.|++..+..-..+|..++.++.
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4678888888776555567766554443
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=2.9e-12 Score=120.26 Aligned_cols=170 Identities=18% Similarity=0.146 Sum_probs=127.1
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCc
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
+..+|..+. ++|++|++++|. +..+| ..+++|++|++++| .+..+|. +.. +|++|++++|.... .+
T Consensus 71 L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~l~~----lp 136 (571)
T 3cvr_A 71 LSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQLTM----LP 136 (571)
T ss_dssp CSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSCCSC----CC
T ss_pred CCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCcCCC----CC
Confidence 356777664 889999999998 77888 56899999999999 6677887 655 99999999988763 33
Q ss_pred cccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccE
Q 044247 81 GSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKE 160 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 160 (333)
. .+++|+.|++.... +..... .+++|++|++++|.+ ..++. +. ++|+.
T Consensus 137 ~---~l~~L~~L~Ls~N~-l~~lp~-------~l~~L~~L~Ls~N~L------------------~~lp~-l~--~~L~~ 184 (571)
T 3cvr_A 137 E---LPALLEYINADNNQ-LTMLPE-------LPTSLEVLSVRNNQL------------------TFLPE-LP--ESLEA 184 (571)
T ss_dssp C---CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSCC------------------SCCCC-CC--TTCCE
T ss_pred C---cCccccEEeCCCCc-cCcCCC-------cCCCcCEEECCCCCC------------------CCcch-hh--CCCCE
Confidence 3 57888888876532 221111 457999999999953 23444 43 89999
Q ss_pred EEEeeecCCCCccCchhhhcCCCc-------cEEEeecCCCCCCCCC-CCCCccccceecccccccccccc
Q 044247 161 LHIHEYRGRRNVVPKNWVMSLTNL-------RVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGN 223 (333)
Q Consensus 161 L~l~~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~ 223 (333)
|++++|.... + |. +.. +| +.|++++| .++.+|. +..+++|+.|++++|.....++.
T Consensus 185 L~Ls~N~L~~--l-p~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 185 LDVSTNLLES--L-PA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp EECCSSCCSS--C-CC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred EECcCCCCCc--h-hh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 9999998887 7 66 432 67 99999999 5667776 77799999999999984444443
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=7.8e-12 Score=104.07 Aligned_cols=148 Identities=20% Similarity=0.167 Sum_probs=88.8
Q ss_pred ccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCceeE
Q 044247 14 LERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCS 93 (333)
Q Consensus 14 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 93 (333)
.+.++.+++. +..+|..+. ++|++|++++|......|..+..+++|++|++.+|....
T Consensus 21 ~~~v~c~~~~-l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~------------------- 78 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA------------------- 78 (229)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------
T ss_pred CCEeEccCCC-cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-------------------
Confidence 3456665555 556665443 666677776663322234445666666666665554321
Q ss_pred ecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCcc
Q 044247 94 IDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVV 173 (333)
Q Consensus 94 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 173 (333)
++. ..+..+++|+.|++++|.+. ......+..+++|+.|++++|.... +
T Consensus 79 ------i~~------~~~~~l~~L~~L~Ls~N~l~-----------------~l~~~~~~~l~~L~~L~Ls~N~l~~--l 127 (229)
T 3e6j_A 79 ------LPV------GVFDSLTQLTVLDLGTNQLT-----------------VLPSAVFDRLVHLKELFMCCNKLTE--L 127 (229)
T ss_dssp ------CCT------TTTTTCTTCCEEECCSSCCC-----------------CCCTTTTTTCTTCCEEECCSSCCCS--C
T ss_pred ------cCh------hhcccCCCcCEEECCCCcCC-----------------ccChhHhCcchhhCeEeccCCcccc--c
Confidence 110 12344566777777777421 1112345567777888887777776 6
Q ss_pred CchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceeccccc
Q 044247 174 PKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 174 ~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~ 216 (333)
|..+..+++|+.|++++| .+..++. +..+++|+.|++++|+
T Consensus 128 -p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 128 -PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp -CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred -CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 666777788888888877 4445543 6667778888887776
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=1.2e-11 Score=102.30 Aligned_cols=129 Identities=16% Similarity=0.228 Sum_probs=99.9
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCC-CC-CCCCccccceecccccccccccccccCCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHL-PP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTD 233 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 233 (333)
++++.|+++++.... +++..+..+++|+.|++++|. +..+ +. ++++++|++|++++|. ++.++...
T Consensus 32 ~~l~~L~l~~n~i~~--i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~-------- 99 (220)
T 2v9t_B 32 ETITEIRLEQNTIKV--IPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK-ITELPKSL-------- 99 (220)
T ss_dssp TTCCEEECCSSCCCE--ECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC-CCCCCTTT--------
T ss_pred cCCCEEECCCCcCCC--cCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc-CCccCHhH--------
Confidence 689999999998877 634467889999999999994 4444 33 8889999999999998 77776543
Q ss_pred CCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCc-ccCCCCCcceEEEcccCh
Q 044247 234 GSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD-HLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~c~ 307 (333)
+..+++|++|+++++ .+..+ .+..+..+++|+.|+++++ .++.++. .+..+++|+.|++ .+++
T Consensus 100 ---f~~l~~L~~L~L~~N-~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L-~~N~ 163 (220)
T 2v9t_B 100 ---FEGLFSLQLLLLNAN-KINCL-----RVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHL-AQNP 163 (220)
T ss_dssp ---TTTCTTCCEEECCSS-CCCCC-----CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC-CSSC
T ss_pred ---ccCCCCCCEEECCCC-CCCEe-----CHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEe-CCCC
Confidence 457899999999985 34333 2345668899999999985 5555554 5777999999999 7654
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=1.9e-11 Score=101.78 Aligned_cols=128 Identities=22% Similarity=0.232 Sum_probs=103.1
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTD 233 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 233 (333)
++|+.|++++|.... +.+..+..+++|+.|++++|. ++.++. ++.+++|+.|++++|. ++.++...
T Consensus 40 ~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~-------- 107 (229)
T 3e6j_A 40 TNAQILYLHDNQITK--LEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAV-------- 107 (229)
T ss_dssp TTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT--------
T ss_pred CCCCEEEcCCCccCc--cCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCc-CCccChhH--------
Confidence 799999999998877 536678889999999999994 566665 6889999999999997 66665543
Q ss_pred CCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCc-ccCCCCCcceEEEcccCh
Q 044247 234 GSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD-HLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~c~ 307 (333)
+..+++|++|+++++ ++.. +|..+..+++|+.|+++++ .++.++. .+..+++|+.|++ .+++
T Consensus 108 ---~~~l~~L~~L~Ls~N-~l~~------lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l-~~N~ 170 (229)
T 3e6j_A 108 ---FDRLVHLKELFMCCN-KLTE------LPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYL-FGNP 170 (229)
T ss_dssp ---TTTCTTCCEEECCSS-CCCS------CCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC-TTSC
T ss_pred ---hCcchhhCeEeccCC-cccc------cCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEe-eCCC
Confidence 468899999999985 4543 4455668999999999985 6667664 5777999999999 8654
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=1.3e-11 Score=102.07 Aligned_cols=146 Identities=15% Similarity=0.212 Sum_probs=91.5
Q ss_pred cEEeecCCCcccccCccccccccccEEecCCCCCcccccc-cccccccCceeeeEEEcCccCCCCCccccccCccCceeE
Q 044247 15 ERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCS 93 (333)
Q Consensus 15 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 93 (333)
+.++.+++. +..+|..+. ++|+.|++++| .+..++. .+..+++|+.|++++|.... ..+.
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~---~~~~------------ 74 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISE---LAPD------------ 74 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCE---ECTT------------
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCC---cCHH------------
Confidence 567777776 677776554 67888888887 4555544 57777888888877665442 1122
Q ss_pred ecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCccccccccc-ccCCCCCCccEEEEeeecCCCCc
Q 044247 94 IDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLL-DALGPPPNLKELHIHEYRGRRNV 172 (333)
Q Consensus 94 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~ 172 (333)
.+..+++|++|++++|.+ ..++ ..+..+++|+.|++++|....
T Consensus 75 ----------------~~~~l~~L~~L~Ls~N~l------------------~~l~~~~f~~l~~L~~L~L~~N~l~~-- 118 (220)
T 2v9t_B 75 ----------------AFQGLRSLNSLVLYGNKI------------------TELPKSLFEGLFSLQLLLLNANKINC-- 118 (220)
T ss_dssp ----------------TTTTCSSCCEEECCSSCC------------------CCCCTTTTTTCTTCCEEECCSSCCCC--
T ss_pred ----------------HhhCCcCCCEEECCCCcC------------------CccCHhHccCCCCCCEEECCCCCCCE--
Confidence 234445666666666632 1222 234556777777777766655
Q ss_pred cCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceeccccc
Q 044247 173 VPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 173 ~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~ 216 (333)
+.+..+..+++|+.|++++|. ++.++. +..+++|+.|++++|+
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 434556677777777777773 344443 6667777777777776
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=7.8e-12 Score=111.41 Aligned_cols=170 Identities=18% Similarity=0.128 Sum_probs=104.8
Q ss_pred cEEeecCCCcccccCccccccccccEEecCCCCCccccccc-cc-ccccCceeeeEEEcCccCCCCCccccccCccCcee
Q 044247 15 ERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVG-IG-ELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQC 92 (333)
Q Consensus 15 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 92 (333)
++++.+++. +..+|..+. +.++.|++++| .+..++.. +. .+++|++|++++|.+.. .....+..+++|+.|
T Consensus 21 ~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~---i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNF---ISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSC-CSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEE
T ss_pred CEEEeCCCC-cCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCc---cChhhccCCCCCCEE
Confidence 567777766 666776543 35777888777 45555443 44 67778888877776552 223345666677776
Q ss_pred EecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCc
Q 044247 93 SIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNV 172 (333)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 172 (333)
++.... +... ....+..+++|++|++++|.+ ....+..+..+++|+.|++++|....
T Consensus 94 ~Ls~N~-l~~~---~~~~~~~l~~L~~L~L~~N~i-----------------~~~~~~~~~~l~~L~~L~L~~N~l~~-- 150 (361)
T 2xot_A 94 DLSSNH-LHTL---DEFLFSDLQALEVLLLYNNHI-----------------VVVDRNAFEDMAQLQKLYLSQNQISR-- 150 (361)
T ss_dssp ECCSSC-CCEE---CTTTTTTCTTCCEEECCSSCC-----------------CEECTTTTTTCTTCCEEECCSSCCCS--
T ss_pred ECCCCc-CCcC---CHHHhCCCcCCCEEECCCCcc-----------------cEECHHHhCCcccCCEEECCCCcCCe--
Confidence 665421 1111 112456677888888887752 22234567777888888888877776
Q ss_pred cCchhh----hcCCCccEEEeecCCCCCCCCC--CCCCcc--ccceeccccc
Q 044247 173 VPKNWV----MSLTNLRVLHLFECRNCEHLPP--LGKLTS--LEDLYIAGMK 216 (333)
Q Consensus 173 ~~~~~~----~~~~~L~~L~l~~~~~~~~l~~--~~~l~~--L~~L~l~~~~ 216 (333)
+ +..+ ..+++|+.|++++| .+..++. +..++. |+.|++++|+
T Consensus 151 l-~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 151 F-PVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp C-CGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred e-CHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 6 4433 45788888888887 4455553 445555 4778887776
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=3.3e-11 Score=99.65 Aligned_cols=129 Identities=13% Similarity=0.188 Sum_probs=99.2
Q ss_pred CCccEEEEeeecCCCCccC-chhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVP-KNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDT 232 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 232 (333)
+.++.|+++++.... +. +..+..+++|+.|++++|. ++.+++ ++.+++|++|++++|. ++.++...
T Consensus 32 ~~~~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------- 100 (220)
T 2v70_A 32 QYTAELRLNNNEFTV--LEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENVQHKM------- 100 (220)
T ss_dssp TTCSEEECCSSCCCE--ECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCGGG-------
T ss_pred CCCCEEEcCCCcCCc--cCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCccCHhH-------
Confidence 467899999988776 41 2347789999999999994 555543 8899999999999998 66665433
Q ss_pred CCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccC-CcccCCCCCcceEEEcccCh
Q 044247 233 DGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKAL-PDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 233 ~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~c~ 307 (333)
+..+++|++|+++++. +..+ .|..+..+++|+.|+++++ .++.+ |..+..+++|+.|++ .+++
T Consensus 101 ----~~~l~~L~~L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L-~~N~ 164 (220)
T 2v70_A 101 ----FKGLESLKTLMLRSNR-ITCV-----GNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNL-LANP 164 (220)
T ss_dssp ----GTTCSSCCEEECTTSC-CCCB-----CTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEEC-CSCC
T ss_pred ----hcCCcCCCEEECCCCc-CCeE-----CHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEe-cCcC
Confidence 4688999999999963 4332 3445668899999999985 45554 677888999999999 8764
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=3.1e-11 Score=99.75 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=90.4
Q ss_pred cEEeecCCCcccccCccccccccccEEecCCCCCcccc-cc-cccccccCceeeeEEEcCccCCCCCccccccCccCcee
Q 044247 15 ERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYL-PV-GIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQC 92 (333)
Q Consensus 15 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 92 (333)
++++++++. +..+|..+. +.+++|++++| .+..+ +. .+..+++|++|++++|.+.. ....
T Consensus 14 ~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~---i~~~----------- 75 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITD---IEEG----------- 75 (220)
T ss_dssp TEEECCSSC-CSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCE---ECTT-----------
T ss_pred CEeEeCCCC-cccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCE---ECHH-----------
Confidence 578888777 667776553 35678888887 45554 32 36777888888877665442 1111
Q ss_pred EecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCc
Q 044247 93 SIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNV 172 (333)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 172 (333)
.+..+++|++|++++|.+. ......+..+++|+.|++++|....
T Consensus 76 -----------------~~~~l~~L~~L~Ls~N~l~-----------------~~~~~~~~~l~~L~~L~Ls~N~l~~-- 119 (220)
T 2v70_A 76 -----------------AFEGASGVNEILLTSNRLE-----------------NVQHKMFKGLESLKTLMLRSNRITC-- 119 (220)
T ss_dssp -----------------TTTTCTTCCEEECCSSCCC-----------------CCCGGGGTTCSSCCEEECTTSCCCC--
T ss_pred -----------------HhCCCCCCCEEECCCCccC-----------------ccCHhHhcCCcCCCEEECCCCcCCe--
Confidence 2344556666666666421 1222345566777777777766655
Q ss_pred cCchhhhcCCCccEEEeecCCCCCCC-CC-CCCCccccceeccccc
Q 044247 173 VPKNWVMSLTNLRVLHLFECRNCEHL-PP-LGKLTSLEDLYIAGMK 216 (333)
Q Consensus 173 ~~~~~~~~~~~L~~L~l~~~~~~~~l-~~-~~~l~~L~~L~l~~~~ 216 (333)
+.+..+..+++|+.|++++|. +..+ |. ++.+++|+.|++++|+
T Consensus 120 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 120 VGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp BCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 424556667777777777773 3333 32 6667777777777776
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=1.1e-11 Score=97.90 Aligned_cols=132 Identities=19% Similarity=0.263 Sum_probs=102.8
Q ss_pred CCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceeccccccccc-ccccccCCCCCC
Q 044247 154 PPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKR-VGNEFLGVESDT 232 (333)
Q Consensus 154 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~~~~~ 232 (333)
..++|+.|++++|......+ |..+..+++|+.|++++|. +..++.++.+++|++|++++|. +.. ++..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------- 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDML-------- 90 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHH--------
T ss_pred CcccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHH--------
Confidence 34789999999998771117 7777889999999999995 5556668899999999999998 544 3322
Q ss_pred CCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCc----ccCCCCCcceEEEcccCh
Q 044247 233 DGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD----HLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 233 ~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~~c~ 307 (333)
...+++|++|+++++ .+..++. +..+..+++|+.|++++| .+..++. .+..+++|+.|++ .+|.
T Consensus 91 ----~~~l~~L~~L~Ls~N-~l~~~~~----~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l-~~n~ 158 (168)
T 2ell_A 91 ----AEKLPNLTHLNLSGN-KLKDIST----LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDG-YDRE 158 (168)
T ss_dssp ----HHHCTTCCEEECBSS-SCCSSGG----GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETT-EETT
T ss_pred ----HhhCCCCCEEeccCC-ccCcchh----HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecC-CCCC
Confidence 456999999999996 5555431 134568999999999996 4556665 6778999999999 8876
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=1.2e-11 Score=110.20 Aligned_cols=166 Identities=16% Similarity=0.087 Sum_probs=118.6
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCcc-cc-ccccccEEecCCCCCccccc-ccccccccCceeeeEEEcCccCCC
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQG-IG-KLRKLMYLDNDYTDSLRYLP-VGIGELIRLRRVTKFVVCGGYDRA 77 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~-i~-~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~ 77 (333)
++.+|..+. ..+++|++++|. +..++.. +. .+++|++|++++| .+..++ ..+..+++|++|++++|....
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~--- 102 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHT--- 102 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE---
T ss_pred cCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCc---
Confidence 356777665 458999999998 6655544 55 8999999999999 556665 458999999999999988763
Q ss_pred CCccccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCC
Q 044247 78 CSLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPN 157 (333)
Q Consensus 78 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (333)
.....+..+++|+.|++....- .. .....+..+++|++|++++|.+.. ........+..+++
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i-~~---~~~~~~~~l~~L~~L~L~~N~l~~--------------l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHI-VV---VDRNAFEDMAQLQKLYLSQNQISR--------------FPVELIKDGNKLPK 164 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC-CE---ECTTTTTTCTTCCEEECCSSCCCS--------------CCGGGTC----CTT
T ss_pred CCHHHhCCCcCCCEEECCCCcc-cE---ECHHHhCCcccCCEEECCCCcCCe--------------eCHHHhcCcccCCc
Confidence 2334567888999988865321 11 112357788999999999996432 11122222256899
Q ss_pred ccEEEEeeecCCCCccCchhhhcCCC--ccEEEeecCC
Q 044247 158 LKELHIHEYRGRRNVVPKNWVMSLTN--LRVLHLFECR 193 (333)
Q Consensus 158 L~~L~l~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~ 193 (333)
|+.|++++|.... +++..+..++. ++.|++.+|.
T Consensus 165 L~~L~L~~N~l~~--l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 165 LMLLDLSSNKLKK--LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCEEECCSSCCCC--CCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCEEECCCCCCCc--cCHHHhhhccHhhcceEEecCCC
Confidence 9999999999887 73456777777 4889999884
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=3.8e-11 Score=94.78 Aligned_cols=136 Identities=17% Similarity=0.123 Sum_probs=81.7
Q ss_pred CCcccEEeecCCCcc-cccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccC
Q 044247 11 LYNLERVNVSGCSHL-RELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLL 89 (333)
Q Consensus 11 l~~L~~L~l~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L 89 (333)
.++|++|++++|... +.+|..+..+++|++|++++| .+..+ ..+..+++|++|++++|.... ..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~---~~~--------- 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFG---GLD--------- 88 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCS---CCC---------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCch---HHH---------
Confidence 355666666666522 255555566666666666665 34444 445556666666665554431 011
Q ss_pred ceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCC
Q 044247 90 RQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGR 169 (333)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 169 (333)
..+..+++|++|++++|.+.+. ..+..+..+++|+.|++++|...
T Consensus 89 -------------------~~~~~l~~L~~L~Ls~N~l~~~----------------~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 89 -------------------MLAEKLPNLTHLNLSGNKLKDI----------------STLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp -------------------HHHHHCTTCCEEECBSSSCCSS----------------GGGGGGSSCSCCCEEECCSSGGG
T ss_pred -------------------HHHhhCCCCCEEeccCCccCcc----------------hhHHHHhcCCCCCEEEeeCCcCc
Confidence 1333467788888888753211 11256677888888888888777
Q ss_pred CCccCch----hhhcCCCccEEEeecCCCCCCCC
Q 044247 170 RNVVPKN----WVMSLTNLRVLHLFECRNCEHLP 199 (333)
Q Consensus 170 ~~~~~~~----~~~~~~~L~~L~l~~~~~~~~l~ 199 (333)
. + +. .+..+++|+.|++++|. ...+|
T Consensus 134 ~--~-~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 134 N--L-NDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp T--S-TTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred c--h-HHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 6 5 44 66788999999999884 33343
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=1.9e-11 Score=94.47 Aligned_cols=127 Identities=20% Similarity=0.291 Sum_probs=96.2
Q ss_pred CCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceeccccccccc-ccccccCCCCCCC
Q 044247 155 PPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKR-VGNEFLGVESDTD 233 (333)
Q Consensus 155 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~~~~~~ 233 (333)
.++++.|++++|......+ |..+..+++|+.|++++| .+..++.++.+++|++|++++|. +.. ++..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~--------- 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLEVL--------- 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBC-CSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTHHH---------
T ss_pred CccCeEEEccCCcCChhHH-HHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHHHH---------
Confidence 4789999999998771116 777788999999999999 45556668889999999999998 444 4332
Q ss_pred CCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCc----ccCCCCCcceEEE
Q 044247 234 GSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD----HLLQKSTLQNLEI 302 (333)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l 302 (333)
...+++|++|+++++. +..++ .+..+..+++|++|++++| .++.++. .+..+++|+.|++
T Consensus 84 ---~~~l~~L~~L~ls~N~-i~~~~----~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 84 ---AEKCPNLTHLNLSGNK-IKDLS----TIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ---HHHCTTCCEEECTTSC-CCSHH----HHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ---hhhCCCCCEEECCCCc-CCChH----HHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 4568999999999863 54432 1244568999999999986 4555554 5667899999887
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=2.2e-10 Score=100.61 Aligned_cols=239 Identities=10% Similarity=0.075 Sum_probs=141.8
Q ss_pred CCcccEEeecCCCccc--------------------ccC-ccccc--------cccccEEecCCCCCcccccc-cccccc
Q 044247 11 LYNLERVNVSGCSHLR--------------------ELP-QGIGK--------LRKLMYLDNDYTDSLRYLPV-GIGELI 60 (333)
Q Consensus 11 l~~L~~L~l~~~~~~~--------------------~lp-~~i~~--------l~~L~~L~l~~~~~~~~~p~-~i~~l~ 60 (333)
+++|++|++++|. +. .+| .++.+ |++|+.|++.. .+..++. .+..++
T Consensus 48 l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCT
T ss_pred hccCeEEecCcce-eEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCc
Confidence 7889999999987 43 222 23556 88888888877 4555554 377888
Q ss_pred cCceeeeEEEcCccCCCCCccccccCccCceeEecC------CCCCCChhhHHHHhhcccCCcc-ceEEeecCCCCCchh
Q 044247 61 RLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDG------LGGVSDAGEARRAELEKKKNLF-DLELDFDNLRDGDEE 133 (333)
Q Consensus 61 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~------~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~ 133 (333)
+|+.+++.++....... ..+....++..+.... ...+.. ..+..+..|+ .+.+.... .
T Consensus 125 ~L~~l~l~~n~i~~i~~---~aF~~~~~l~~l~~~~~~~~~~~~~i~~------~~f~~~~~L~~~i~~~~~~----~-- 189 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLP---EALADSVTAIFIPLGSSDAYRFKNRWEH------FAFIEGEPLETTIQVGAMG----K-- 189 (329)
T ss_dssp TCCEEEBCCSSCCEECT---TSSCTTTCEEEECTTCTHHHHTSTTTTT------SCEEESCCCEEEEEECTTC----C--
T ss_pred ccceEEcCCCCccccch---hhhcCCCceEEecCcchhhhhccccccc------cccccccccceeEEecCCC----c--
Confidence 88888887765442112 2222233333222221 000000 1233344444 33332221 0
Q ss_pred hhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhh-hcCCCccEEEeecCCCCCCCCC--CCCCccccce
Q 044247 134 QAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWV-MSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDL 210 (333)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L 210 (333)
........-....++..+.+.+.-... - ...+ ..+++|+.+++.+| .+..++. +.++++|+.+
T Consensus 190 ----------l~~~~~~~~~~~~~~~~l~~~~~l~~~--~-~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 190 ----------LEDEIMKAGLQPRDINFLTIEGKLDNA--D-FKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp ----------HHHHHHHTTCCGGGCSEEEEEECCCHH--H-HHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEE
T ss_pred ----------HHHHHhhcccCccccceEEEeeeecHH--H-HHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEE
Confidence 111112222234566777776643222 1 1122 24889999999987 4566665 8889999999
Q ss_pred ecccccccccccccccCCCCCCCCCccccCCCcc-EEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCc
Q 044247 211 YIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLK-RLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD 289 (333)
Q Consensus 211 ~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 289 (333)
++.++ ++.++... +..+++|+ .+.+.+ +++.+. +..+..+++|+++++.+ +.++.++.
T Consensus 256 ~l~~n--i~~I~~~a-----------F~~~~~L~~~l~l~~--~l~~I~-----~~aF~~c~~L~~l~l~~-n~i~~I~~ 314 (329)
T 3sb4_A 256 KLPHN--LKTIGQRV-----------FSNCGRLAGTLELPA--SVTAIE-----FGAFMGCDNLRYVLATG-DKITTLGD 314 (329)
T ss_dssp ECCTT--CCEECTTT-----------TTTCTTCCEEEEECT--TCCEEC-----TTTTTTCTTEEEEEECS-SCCCEECT
T ss_pred ECCcc--cceehHHH-----------hhCChhccEEEEEcc--cceEEc-----hhhhhCCccCCEEEeCC-CccCccch
Confidence 99886 77776654 46788898 998886 444443 13455789999999876 56666655
Q ss_pred -ccCCCCCcceEEE
Q 044247 290 -HLLQKSTLQNLEI 302 (333)
Q Consensus 290 -~~~~l~~L~~L~l 302 (333)
.+..+++|+.++.
T Consensus 315 ~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 315 ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCCCEEEC
T ss_pred hhhcCCcchhhhcc
Confidence 6677888888864
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=5.4e-11 Score=94.70 Aligned_cols=136 Identities=15% Similarity=0.206 Sum_probs=105.1
Q ss_pred cCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCCCCCCccccceecccccccccccccccCCCC
Q 044247 151 ALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVES 230 (333)
Q Consensus 151 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 230 (333)
.+..+++|+.|++++|.... + +......++|+.|++++| .++.++.++.+++|++|++++|. ++.++...
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i-~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~----- 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--I-ENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGL----- 83 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--C-CCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCH-----
T ss_pred hcCCcCCceEEEeeCCCCch--h-HHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-ccccCcch-----
Confidence 34567899999999998887 6 654444569999999999 45566778999999999999998 66666442
Q ss_pred CCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcc----cCCCCCcceEEEcccC
Q 044247 231 DTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDH----LLQKSTLQNLEIWGAC 306 (333)
Q Consensus 231 ~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~l~~L~~L~l~~~c 306 (333)
+..+++|++|+++++ .+..++.- ..+..+++|+.|++++|+ +..+|.. +..+++|+.|++ ..+
T Consensus 84 ------~~~l~~L~~L~L~~N-~i~~~~~~----~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~-~~n 150 (176)
T 1a9n_A 84 ------DQALPDLTELILTNN-SLVELGDL----DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF-QKV 150 (176)
T ss_dssp ------HHHCTTCCEEECCSC-CCCCGGGG----GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT-EEC
T ss_pred ------hhcCCCCCEEECCCC-cCCcchhh----HhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCC-CcC
Confidence 368999999999996 45444321 145689999999999965 4566663 677999999999 887
Q ss_pred hhh
Q 044247 307 HIL 309 (333)
Q Consensus 307 ~~l 309 (333)
..-
T Consensus 151 ~~~ 153 (176)
T 1a9n_A 151 KLK 153 (176)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=1.1e-10 Score=90.24 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=83.6
Q ss_pred CCCcccEEeecCCCcc-cccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCcc
Q 044247 10 ELYNLERVNVSGCSHL-RELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNL 88 (333)
Q Consensus 10 ~l~~L~~L~l~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 88 (333)
..++|++|++++|... +.+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|.... ..+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~---~~~~------- 82 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSG---GLEV------- 82 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCS---CTHH-------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccc---hHHH-------
Confidence 3567888888888733 377777788888888888887 55555 557777888888877665542 1111
Q ss_pred CceeEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecC
Q 044247 89 LRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRG 168 (333)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 168 (333)
.+..+++|++|++++|.+.+ ...+..+..+++|+.|++++|..
T Consensus 83 ---------------------~~~~l~~L~~L~ls~N~i~~----------------~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 83 ---------------------LAEKCPNLTHLNLSGNKIKD----------------LSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp ---------------------HHHHCTTCCEEECTTSCCCS----------------HHHHGGGGGCTTCCEEECTTCGG
T ss_pred ---------------------HhhhCCCCCEEECCCCcCCC----------------hHHHHHHhhCCCCCEEeCcCCcc
Confidence 23345666666666664211 01124556667777777777776
Q ss_pred CCCccCch----hhhcCCCccEEEee
Q 044247 169 RRNVVPKN----WVMSLTNLRVLHLF 190 (333)
Q Consensus 169 ~~~~~~~~----~~~~~~~L~~L~l~ 190 (333)
.. + +. .+..+++|+.|+++
T Consensus 126 ~~--~-~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 126 TN--L-NDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GG--S-TTHHHHHHHHCTTCCEETTB
T ss_pred cc--h-HHHHHHHHHHCCCcccccCC
Confidence 65 4 33 56678888888765
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.09 E-value=1.6e-10 Score=92.01 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=30.5
Q ss_pred hcCCCcccEEeecCCCcccccCccccccc-cccEEecCCCCCcccccccccccccCceeeeEEEc
Q 044247 8 LCELYNLERVNVSGCSHLRELPQGIGKLR-KLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVC 71 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 71 (333)
+..+.+|++|++++|. +..+|. +..+. +|++|++++| .+..+ ..++.+++|++|++++|.
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC
T ss_pred cCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc
Confidence 3445556666666665 444443 33333 5666666655 33333 335555555555555443
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.05 E-value=2.8e-11 Score=117.29 Aligned_cols=64 Identities=27% Similarity=0.282 Sum_probs=30.0
Q ss_pred CCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceeccccccccccc
Q 044247 154 PPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVG 222 (333)
Q Consensus 154 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~ 222 (333)
.+++|+.|+|++|.... + |..+..+++|+.|+|++|. +..+|. ++.+++|++|++++|. ++.+|
T Consensus 245 ~l~~L~~L~Ls~N~l~~--l-p~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp 309 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTE--L-PAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLP 309 (727)
T ss_dssp GCCSCSCCBCTTSCCSC--C-CGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCC
T ss_pred CCCCCCEEEeeCCcCcc--c-ChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccC
Confidence 44455555555544443 4 4444445555555555542 223333 4444555555555543 33443
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.03 E-value=1.4e-09 Score=87.68 Aligned_cols=105 Identities=19% Similarity=0.297 Sum_probs=74.5
Q ss_pred CccEEEEeeecCCCCccCch--hhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCC
Q 044247 157 NLKELHIHEYRGRRNVVPKN--WVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTD 233 (333)
Q Consensus 157 ~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 233 (333)
+++.|+++++.... + +. .+..+++|++|++++|...+..|. ++.+++|++|++++|. ++.++...
T Consensus 30 ~l~~L~l~~n~i~~--~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------- 97 (192)
T 1w8a_A 30 HTTELLLNDNELGR--I-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKM-------- 97 (192)
T ss_dssp TCSEEECCSCCCCS--B-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSS--------
T ss_pred CCCEEECCCCcCCc--c-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHH--------
Confidence 88889998887766 5 33 377888999999988843333333 7788889999998887 55554432
Q ss_pred CCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCc
Q 044247 234 GSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCR 282 (333)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 282 (333)
+..+++|++|+++++ ++.. ..|..+..+++|++|++++++
T Consensus 98 ---~~~l~~L~~L~L~~N-~l~~-----~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 98 ---FLGLHQLKTLNLYDN-QISC-----VMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ---STTCTTCCEEECCSS-CCCE-----ECTTSSTTCTTCCEEECTTCC
T ss_pred ---hcCCCCCCEEECCCC-cCCe-----eCHHHhhcCCCCCEEEeCCCC
Confidence 457788888888885 3332 234455678888888888754
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=2e-11 Score=99.21 Aligned_cols=115 Identities=19% Similarity=0.142 Sum_probs=86.7
Q ss_pred CCcccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCc
Q 044247 1 IEKLPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSL 80 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~ 80 (333)
++.+|..++.+++|++|++++|. +..+| .+..+++|++|++++| .+..+|..+..+++|++|++++|.... .
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~-----l 108 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIAS-----L 108 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCC-----H
T ss_pred HhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCc-----C
Confidence 35667788899999999999887 66677 6888999999999888 566788777778899999999887763 3
Q ss_pred cccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecC
Q 044247 81 GSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDN 126 (333)
Q Consensus 81 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 126 (333)
+.+..+++|+.|++.... +..... ...+..+++|++|++++|.
T Consensus 109 ~~~~~l~~L~~L~l~~N~-i~~~~~--~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 109 SGIEKLVNLRVLYMSNNK-ITNWGE--IDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHHHHSSEEEESEEE-CCCHHH--HHHHTTTTTCSEEEECSCH
T ss_pred CccccCCCCCEEECCCCc-CCchhH--HHHHhcCCCCCEEEecCCc
Confidence 367778888888776432 222111 1356778899999998884
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.02 E-value=7.1e-11 Score=114.50 Aligned_cols=113 Identities=16% Similarity=-0.055 Sum_probs=63.8
Q ss_pred cCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccCccCceeEecCC--CCCCChhh
Q 044247 28 LPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDGL--GGVSDAGE 105 (333)
Q Consensus 28 lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~ 105 (333)
.|..+..+++|+.|++++| .+..+|..+..+++|++|++++|.+.. .+..+.++++|+.|++... ..++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~----lp~~~~~l~~L~~L~Ls~N~l~~lp---- 286 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTE----LPAEIKNLSNLRVLDLSHNRLTSLP---- 286 (727)
T ss_dssp ------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSC----CCGGGGGGTTCCEEECTTSCCSSCC----
T ss_pred ChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcc----cChhhhCCCCCCEEeCcCCcCCccC----
Confidence 3445566666666666666 445666666666666666666665542 4455566666666655432 2222
Q ss_pred HHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCC
Q 044247 106 ARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRR 170 (333)
Q Consensus 106 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 170 (333)
..+..+++|++|++++|. ...++..+..+++|+.|++++|....
T Consensus 287 ---~~~~~l~~L~~L~L~~N~------------------l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 287 ---AELGSCFQLKYFYFFDNM------------------VTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp ---SSGGGGTTCSEEECCSSC------------------CCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred ---hhhcCCCCCCEEECCCCC------------------CCccChhhhcCCCccEEeCCCCccCC
Confidence 245556677777777663 23445556667777777777766554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.02 E-value=2.8e-09 Score=86.08 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=76.8
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTD 233 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 233 (333)
++++.|+++++.... + |..+..+++|+.|++++| .++.+++ +..+++|++|++++|. ++.++...
T Consensus 31 ~~l~~L~L~~n~i~~--i-p~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~-------- 97 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--V-PKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRT-------- 97 (193)
T ss_dssp TTCCEEECCSSCCCS--C-CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT--------
T ss_pred CCCCEEECCCCcCch--h-HHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHH--------
Confidence 578899999888877 7 777888899999999988 4455554 7888899999999887 66655432
Q ss_pred CCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCc
Q 044247 234 GSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCR 282 (333)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 282 (333)
+..+++|+.|+++++ .+..++. ..+..+++|+.|++++++
T Consensus 98 ---f~~l~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 ---FDGLKSLRLLSLHGN-DISVVPE-----GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ---TTTCTTCCEEECCSS-CCCBCCT-----TTTTTCTTCCEEECCSSC
T ss_pred ---hCCCCCCCEEECCCC-CCCeeCh-----hhhhcCccccEEEeCCCC
Confidence 457788888888884 4443331 234467888888888754
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=3.2e-09 Score=85.72 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=94.1
Q ss_pred cEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC-CCCCccccceecccccccccccccccCCCCCCCCCcc
Q 044247 159 KELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP-LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSV 237 (333)
Q Consensus 159 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~ 237 (333)
+.++++++.... + |..+ .++|+.|++++| .++.+|. ++.+++|+.|++++|. ++.++... +
T Consensus 13 ~~l~~~~~~l~~--i-p~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~-----------f 74 (193)
T 2wfh_A 13 TVVRCSNKGLKV--L-PKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQS-----------F 74 (193)
T ss_dssp TEEECTTSCCSS--C-CSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTT-----------T
T ss_pred CEEEcCCCCCCc--C-CCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeCHhH-----------c
Confidence 467777777666 7 6544 579999999999 4566765 8889999999999998 66665432 5
Q ss_pred ccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCc-ccCCCCCcceEEEcccCh
Q 044247 238 IAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD-HLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 238 ~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~c~ 307 (333)
..+++|++|+++++ .++.++ +..+..+++|+.|++++ +.++.++. .+..+++|+.|++ .+++
T Consensus 75 ~~l~~L~~L~Ls~N-~l~~i~-----~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L-~~N~ 137 (193)
T 2wfh_A 75 SNMTQLLTLILSYN-RLRCIP-----PRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAI-GANP 137 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCC-----TTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEEC-CSSC
T ss_pred cCCCCCCEEECCCC-ccCEeC-----HHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEe-CCCC
Confidence 68899999999995 454443 23456789999999998 45667766 4677999999999 7654
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=2.5e-09 Score=86.25 Aligned_cols=124 Identities=10% Similarity=0.151 Sum_probs=93.8
Q ss_pred cEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC---CCCCccccceecccccccccccccccCCCCCCCCC
Q 044247 159 KELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP---LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGS 235 (333)
Q Consensus 159 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~---~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 235 (333)
+.++++++.... + |..+ .++++.|++++| .+..++. ++.+++|++|++++|. ++.+....
T Consensus 11 ~~l~~s~~~l~~--i-p~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---------- 73 (192)
T 1w8a_A 11 TTVDCTGRGLKE--I-PRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNA---------- 73 (192)
T ss_dssp TEEECTTSCCSS--C-CSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTT----------
T ss_pred CEEEcCCCCcCc--C-ccCC--CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhH----------
Confidence 678888877776 7 6544 459999999999 4555553 7889999999999998 55553322
Q ss_pred ccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEEcccCh
Q 044247 236 SVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEIWGACH 307 (333)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~c~ 307 (333)
+..+++|++|+++++ .++.+. +..+..+++|++|+++++..-...|..+..+++|+.|++ .+++
T Consensus 74 -~~~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L-~~N~ 137 (192)
T 1w8a_A 74 -FEGASHIQELQLGEN-KIKEIS-----NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL-ASNP 137 (192)
T ss_dssp -TTTCTTCCEEECCSC-CCCEEC-----SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC-TTCC
T ss_pred -cCCcccCCEEECCCC-cCCccC-----HHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe-CCCC
Confidence 568899999999995 444433 234557899999999996544455777888999999999 7654
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.97 E-value=4.7e-08 Score=87.96 Aligned_cols=237 Identities=8% Similarity=0.048 Sum_probs=149.8
Q ss_pred hcCCCcccEEeecCCCcccccC-ccccccccccEEecCCCCCccccc-ccccccccCceeeeEEEcCccCCCCCcccccc
Q 044247 8 LCELYNLERVNVSGCSHLRELP-QGIGKLRKLMYLDNDYTDSLRYLP-VGIGELIRLRRVTKFVVCGGYDRACSLGSLKK 85 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 85 (333)
+.++ +|+.+.+..+ +..++ .++.++ +|+.+.+.. .+..++ ..+..+.+|+.+++..+.........+ .
T Consensus 132 F~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF---~- 201 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF---V- 201 (401)
T ss_dssp TTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT---T-
T ss_pred cccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhE---e-
Confidence 4443 6888887765 44444 345554 688888875 445554 347788889998887655443112222 2
Q ss_pred CccCceeEecC-CCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEe
Q 044247 86 LNLLRQCSIDG-LGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIH 164 (333)
Q Consensus 86 l~~L~~L~l~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 164 (333)
..+|+.+.+.. +..+.. ..+..+++|+.+.+..+ ...--..+|.. .+|+.+.+.
T Consensus 202 ~~~L~~l~lp~~l~~I~~------~aF~~~~~L~~l~l~~~------------------l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 202 YAGIEEVLLPVTLKEIGS------QAFLKTSQLKTIEIPEN------------------VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp TCCCSEEECCTTCCEECT------TTTTTCTTCCCEECCTT------------------CCEECTTTTTT-CCCSEEEEE
T ss_pred ecccCEEEeCCchheehh------hHhhCCCCCCEEecCCC------------------ccCcccccccc-CCccEEEeC
Confidence 35677666642 222333 46778889999988765 22222344555 689999985
Q ss_pred eecCCCCccCchhhhcCCCccEEEeecCCCC----CCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccc
Q 044247 165 EYRGRRNVVPKNWVMSLTNLRVLHLFECRNC----EHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVI 238 (333)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~ 238 (333)
+. ... ++...|..+++|+.+.+.++... ..++. +.+|++|+.+++.+. ++.++... +.
T Consensus 257 ~~-i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~a-----------F~ 320 (401)
T 4fdw_A 257 NG-VTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGL-----------LG 320 (401)
T ss_dssp TT-CCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTT-----------TT
T ss_pred CC-ccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhh-----------hc
Confidence 42 233 43556778999999999887332 12333 888999999999853 77776554 46
Q ss_pred cCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCc-ccCCC-CCcceEEEccc
Q 044247 239 AFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD-HLLQK-STLQNLEIWGA 305 (333)
Q Consensus 239 ~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~~ 305 (333)
.+++|+.+.+.. +++.+.. ..+..+ +|+++.+.++ ....++. .+..+ .+++.|++ -.
T Consensus 321 ~c~~L~~l~lp~--~l~~I~~-----~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~v-p~ 379 (401)
T 4fdw_A 321 GNRKVTQLTIPA--NVTQINF-----SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRV-PA 379 (401)
T ss_dssp TCCSCCEEEECT--TCCEECT-----TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEE-CG
T ss_pred CCCCccEEEECc--cccEEcH-----HhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEe-CH
Confidence 788999999965 3444431 234567 9999999885 4444433 34445 47889999 54
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=3.6e-11 Score=97.67 Aligned_cols=107 Identities=11% Similarity=-0.002 Sum_probs=65.5
Q ss_pred hcCCCcccEEeecCCCccc------ccCccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCcc
Q 044247 8 LCELYNLERVNVSGCSHLR------ELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLG 81 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~------~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (333)
+.....++.++++.+...+ .+|..++.+++|++|++++| .+..+| .+..+++|+.|++++|.... .+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~----l~~ 87 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKK----IEN 87 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECS----CSS
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCccc----ccc
Confidence 3344555555555554333 34447888999999999988 566677 78889999999998887653 333
Q ss_pred ccccCccCceeEecCCCCCCChhhHHHHhhcccCCccceEEeecC
Q 044247 82 SLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDN 126 (333)
Q Consensus 82 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 126 (333)
.+..+++|+.|++.... +... ..+..+++|++|++++|.
T Consensus 88 ~~~~~~~L~~L~L~~N~-l~~l-----~~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQ-IASL-----SGIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp HHHHHHHCSEEEEEEEE-CCCH-----HHHHHHHHSSEEEESEEE
T ss_pred hhhcCCcCCEEECcCCc-CCcC-----CccccCCCCCEEECCCCc
Confidence 44445556665554321 1111 124445566666666663
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=1e-08 Score=81.41 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=51.4
Q ss_pred CCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccc
Q 044247 181 LTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWD 258 (333)
Q Consensus 181 ~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~ 258 (333)
+++|+.|++++|. ++.++. ++.+++|++|++++|. ++.++... +..+++|++|+++++ .++.++
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----------~~~l~~L~~L~l~~N-~l~~~~ 92 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGV-----------FDKLTKLTILYLHEN-KLQSLP 92 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT-----------TTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhH-----------ccCCCccCEEECCCC-CccccC
Confidence 3556666666553 333332 4555566666666554 44333321 235556666666553 232221
Q ss_pred cCCccccccccCCCcceEecccCcCcccCCcc-cCCCCCcceEEEcccC
Q 044247 259 LGTAIKGEIIIMPRLSSLSIQSCRELKALPDH-LLQKSTLQNLEIWGAC 306 (333)
Q Consensus 259 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~c 306 (333)
+..+..+++|++|+++++ .++.+|.. +..+++|+.|++ .++
T Consensus 93 -----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l-~~N 134 (177)
T 2o6r_A 93 -----NGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWL-HTN 134 (177)
T ss_dssp -----TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC-CSS
T ss_pred -----HHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEe-cCC
Confidence 112234566666666653 34444443 344566666666 544
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=8.5e-09 Score=81.89 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=83.1
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTD 233 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 233 (333)
++|+.|+++++.... +++..+..+++|++|++++| .+..++. ++.+++|+.|++++|. ++.++...
T Consensus 28 ~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~-------- 95 (177)
T 2o6r_A 28 SSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGV-------- 95 (177)
T ss_dssp TTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT--------
T ss_pred CCCcEEEeCCCcccE--eCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC-ccccCHHH--------
Confidence 689999999988776 63455678999999999999 4556665 6889999999999997 66665442
Q ss_pred CCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcC
Q 044247 234 GSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRE 283 (333)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 283 (333)
+..+++|++|+++++ .+..++. ..+..+++|++|++++++.
T Consensus 96 ---~~~l~~L~~L~l~~N-~l~~~~~-----~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 96 ---FDKLTQLKELALDTN-QLKSVPD-----GIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ---TTTCTTCCEEECCSS-CCSCCCT-----TTTTTCTTCCEEECCSSCB
T ss_pred ---hhCCcccCEEECcCC-cceEeCH-----HHhcCCcccCEEEecCCCe
Confidence 457899999999986 5544332 2235689999999998754
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=4.8e-09 Score=92.06 Aligned_cols=221 Identities=10% Similarity=0.029 Sum_probs=130.9
Q ss_pred CCcccEEeecCCCcccccC-ccccccccccEEecCCCCCcccccc-cccccccCceeeeEEEcCc-cCCCCCccccccCc
Q 044247 11 LYNLERVNVSGCSHLRELP-QGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVCGG-YDRACSLGSLKKLN 87 (333)
Q Consensus 11 l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~ 87 (333)
|++|+.|++.. . +..++ .++.+|++|+.+++..+ .+..++. .+..+.++..+........ .........+..+.
T Consensus 100 ~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 99999999999 5 65555 46889999999999998 4445543 4666666666554331100 00011122233444
Q ss_pred cCce-eEecCCCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccC-CCCCCccEEEEee
Q 044247 88 LLRQ-CSIDGLGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDAL-GPPPNLKELHIHE 165 (333)
Q Consensus 88 ~L~~-L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~ 165 (333)
.|+. +.+..... ........-....++..+.+.+.- .......+ ..+++|+.+++.+
T Consensus 177 ~L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~l------------------~~~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 177 PLETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGKL------------------DNADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp CCEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEECC------------------CHHHHHHHHHHCTTCCEEECTT
T ss_pred ccceeEEecCCCc---HHHHHhhcccCccccceEEEeeee------------------cHHHHHHHHHhcCCCeEEECCC
Confidence 5552 44433222 222222222234566777766551 11111111 1367888888888
Q ss_pred ecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCcccc-ceecccccccccccccccCCCCCCCCCccccCCC
Q 044247 166 YRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLE-DLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPK 242 (333)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~-~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~ 242 (333)
+.... ++...|..+.+|+.+++.++ +..++. +.++++|+ .+++.+ .++.++... +..+++
T Consensus 236 n~i~~--I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a-----------F~~c~~ 298 (329)
T 3sb4_A 236 TNATT--IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA-----------FMGCDN 298 (329)
T ss_dssp BCCCE--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT-----------TTTCTT
T ss_pred CCcce--ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh-----------hhCCcc
Confidence 77666 63456777888888888876 555554 77888888 888877 366676543 457888
Q ss_pred ccEEeeccCccccccccCCccccccccCCCcceEec
Q 044247 243 LKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSI 278 (333)
Q Consensus 243 L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l 278 (333)
|+.+++.+ .+++.+.... +..+++|+.+..
T Consensus 299 L~~l~l~~-n~i~~I~~~a-----F~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATG-DKITTLGDEL-----FGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECS-SCCCEECTTT-----TCTTCCCCEEEC
T ss_pred CCEEEeCC-CccCccchhh-----hcCCcchhhhcc
Confidence 88888865 3555554221 224678877753
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=6.5e-08 Score=87.05 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=143.0
Q ss_pred hcCCCcccEEeecCCCcccccC-ccccccccccEEecCCCCCcccccccccccccCceeeeEEEcCccCCCCCccccccC
Q 044247 8 LCELYNLERVNVSGCSHLRELP-QGIGKLRKLMYLDNDYTDSLRYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKL 86 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l 86 (333)
+.+ .+|+.+.+... +..++ .++.+|++|+.+++..+ .+..++...-...+|+.+.+..+ .. ......+..+
T Consensus 154 F~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~---~I~~~aF~~~ 225 (401)
T 4fdw_A 154 FFN-STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LK---EIGSQAFLKT 225 (401)
T ss_dssp TTT-CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CC---EECTTTTTTC
T ss_pred cCC-CCceEEEeCCC--ccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc-hh---eehhhHhhCC
Confidence 444 46999998862 55444 56888999999999887 66777766444688998887532 11 2233455667
Q ss_pred ccCceeEecC-CCCCCChhhHHHHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEee
Q 044247 87 NLLRQCSIDG-LGGVSDAGEARRAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHE 165 (333)
Q Consensus 87 ~~L~~L~l~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 165 (333)
++|+.+.+.. +..+.. ..+.. .+|+.+.+..+ ...-...+|..|++|+.+.+.+
T Consensus 226 ~~L~~l~l~~~l~~I~~------~aF~~-~~L~~i~lp~~------------------i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 226 SQLKTIEIPENVSTIGQ------EAFRE-SGITTVKLPNG------------------VTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp TTCCCEECCTTCCEECT------TTTTT-CCCSEEEEETT------------------CCEECTTTTTTCTTCCEEEEES
T ss_pred CCCCEEecCCCccCccc------ccccc-CCccEEEeCCC------------------ccEEChhHhhCCCCCCEEEeCC
Confidence 7788877753 332322 23444 68999998544 3233356788999999999987
Q ss_pred ecCC-----CCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccc
Q 044247 166 YRGR-----RNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVI 238 (333)
Q Consensus 166 ~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~ 238 (333)
+... . ++...|..+++|+.+.+..+ +..++. +.+|++|+.+++.++ ++.++... +.
T Consensus 281 ~~~~~~~~~~--I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~a-----------F~ 343 (401)
T 4fdw_A 281 STFNDDPEAM--IHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSA-----------FN 343 (401)
T ss_dssp SCCCCCTTCE--ECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTS-----------SS
T ss_pred ccccCCcccE--ECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHh-----------CC
Confidence 6543 2 32566778999999999853 555554 888999999999765 67776554 45
Q ss_pred cCCCccEEeeccCccccccccCCccccccccCC-CcceEeccc
Q 044247 239 AFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMP-RLSSLSIQS 280 (333)
Q Consensus 239 ~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~-~L~~L~l~~ 280 (333)
.+ +|+.+++.+. .+..+. . ..+..++ +++.|.+-.
T Consensus 344 ~~-~L~~l~l~~n-~~~~l~--~---~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 344 NT-GIKEVKVEGT-TPPQVF--E---KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp SS-CCCEEEECCS-SCCBCC--C---SSCCCSCTTCCEEEECG
T ss_pred CC-CCCEEEEcCC-CCcccc--c---ccccCCCCCccEEEeCH
Confidence 66 9999999884 332222 1 1233343 567776654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.71 E-value=5.7e-08 Score=76.89 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTD 233 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 233 (333)
++|+.|++++|.... +++..+..+++|++|++++| .+..+|. ++.+++|+.|++++|. ++.++...
T Consensus 33 ~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~-------- 100 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK--LEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGA-------- 100 (174)
T ss_dssp TTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT--------
T ss_pred CCCcEEEeCCCCccc--cCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeCHHH--------
Confidence 678888888877766 53556777888888888887 4555655 5677888888888876 55555432
Q ss_pred CCccccCCCccEEeeccCc
Q 044247 234 GSSVIAFPKLKRLRFWSMS 252 (333)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~ 252 (333)
+..+++|+.|++.+++
T Consensus 101 ---~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 101 ---FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp ---TTTCTTCSEEECCSSC
T ss_pred ---hccccCCCEEEeCCCC
Confidence 3567788888887753
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.70 E-value=5.4e-08 Score=76.71 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=61.8
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTD 233 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 233 (333)
++|+.|++++|.... +.+..+..+++|++|++++| .+..+++ ++.+++|++|++++|. ++.++...
T Consensus 30 ~~l~~L~L~~N~i~~--~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~-------- 97 (170)
T 3g39_A 30 TTTQVLYLYDNQITK--LEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGA-------- 97 (170)
T ss_dssp TTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT--------
T ss_pred CCCcEEEcCCCcCCc--cChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc-cCEeCHHH--------
Confidence 688888888888776 53566778888999999888 4556655 5788889999998887 66665432
Q ss_pred CCccccCCCccEEeeccCc
Q 044247 234 GSSVIAFPKLKRLRFWSMS 252 (333)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~ 252 (333)
+..+++|++|++++++
T Consensus 98 ---~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 98 ---FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ---TTTCTTCCEEECCSSC
T ss_pred ---hcCCCCCCEEEeCCCC
Confidence 4577888888888753
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.65 E-value=4.9e-08 Score=77.26 Aligned_cols=100 Identities=20% Similarity=0.196 Sum_probs=61.8
Q ss_pred cEEeecCCCcccccCccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCCCccccccCccCceeE
Q 044247 15 ERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCS 93 (333)
Q Consensus 15 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 93 (333)
+.++++++. +..+|..+. ++|++|++++| .+..+ |..++.+++|+.|++++|.... .....+..+++|+.|+
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTA---IPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCc---cChhHhCCcchhhEEE
Confidence 567777776 667776554 67777777777 34444 4556777777777777776553 1222245666777766
Q ss_pred ecC--CCCCCChhhHHHHhhcccCCccceEEeecCC
Q 044247 94 IDG--LGGVSDAGEARRAELEKKKNLFDLELDFDNL 127 (333)
Q Consensus 94 l~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 127 (333)
+.. +..++. ..+..+++|++|++++|.+
T Consensus 88 L~~N~l~~l~~------~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 88 LNDNHLKSIPR------GAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCSSCCCCCCT------TTTTTCTTCSEEECCSSCB
T ss_pred CCCCccceeCH------HHhccccCCCEEEeCCCCc
Confidence 643 222222 2356677888888888754
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.58 E-value=1.1e-07 Score=75.01 Aligned_cols=101 Identities=24% Similarity=0.200 Sum_probs=65.3
Q ss_pred ccEEeecCCCcccccCccccccccccEEecCCCCCcccc-cccccccccCceeeeEEEcCccCCCCCccccccCccCcee
Q 044247 14 LERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYL-PVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQC 92 (333)
Q Consensus 14 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 92 (333)
.++++++++. +..+|..+. ++|++|++++| .+..+ |..+..+++|++|++++|.... .....+..+++|+.|
T Consensus 11 ~~~l~~s~n~-l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCC-cCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCc---cChhhccCCCCCCEE
Confidence 5677777776 666776553 67778888777 44444 4557777788888887776653 222334667777776
Q ss_pred EecC--CCCCCChhhHHHHhhcccCCccceEEeecCC
Q 044247 93 SIDG--LGGVSDAGEARRAELEKKKNLFDLELDFDNL 127 (333)
Q Consensus 93 ~l~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 127 (333)
++.. +..++. ..+..+++|++|++++|.+
T Consensus 84 ~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 84 SLNDNQLKSIPR------GAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp ECCSSCCCCCCT------TTTTTCTTCCEEECCSSCB
T ss_pred ECCCCccCEeCH------HHhcCCCCCCEEEeCCCCC
Confidence 6643 333222 2466678888888888854
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=4.2e-09 Score=93.91 Aligned_cols=61 Identities=13% Similarity=0.033 Sum_probs=29.7
Q ss_pred CCcccEEeecCCCcccccCccccc-----cccccEEecCCCCCccc-cccc-ccccccCceeeeEEEcC
Q 044247 11 LYNLERVNVSGCSHLRELPQGIGK-----LRKLMYLDNDYTDSLRY-LPVG-IGELIRLRRVTKFVVCG 72 (333)
Q Consensus 11 l~~L~~L~l~~~~~~~~lp~~i~~-----l~~L~~L~l~~~~~~~~-~p~~-i~~l~~L~~L~l~~~~~ 72 (333)
+++|++|++++|.........+.. .++|++|++++|. +.. .... ...+.+|++|++++|..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 345667777776622221222221 2567777777663 222 1111 22345666666666544
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=2.1e-07 Score=73.04 Aligned_cols=113 Identities=11% Similarity=0.043 Sum_probs=74.2
Q ss_pred ccchhcCCCcccEEeecCCCcccccCccccccccccEEecCCCCCccccc-cccccc----ccCceeeeEEEcCccCCCC
Q 044247 4 LPETLCELYNLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYTDSLRYLP-VGIGEL----IRLRRVTKFVVCGGYDRAC 78 (333)
Q Consensus 4 lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l----~~L~~L~l~~~~~~~~~~~ 78 (333)
+|.....-.+|+.|++++|.....--..+.++++|++|++++|..+++.. ..+..+ ++|++|++++|.... ..
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT--D~ 130 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT--DK 130 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC--HH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC--HH
Confidence 55443334578999999998444444557889999999999986665421 224443 468899998887554 44
Q ss_pred CccccccCccCceeEecCCCCCCChhhHHHHhhcccCCcc
Q 044247 79 SLGSLKKLNLLRQCSIDGLGGVSDAGEARRAELEKKKNLF 118 (333)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~ 118 (333)
....+.++++|+.|.+.++..+.+........-..+|+++
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred HHHHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 5666778888888888888877765433333333445443
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=8e-06 Score=73.24 Aligned_cols=215 Identities=12% Similarity=0.032 Sum_probs=105.2
Q ss_pred ccccccccccEEecCCCCCcccccc-cccccccCceeeeEEEcCccCCCCCccccccCccCceeEecCCCC-CCChhhHH
Q 044247 30 QGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDGLGG-VSDAGEAR 107 (333)
Q Consensus 30 ~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~ 107 (333)
.++.++++|+.+.+..+ ...++. .+..+.+|+.+.+..+-.. .....+.+...|+.+.+..-.. +.
T Consensus 156 ~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~----I~~~~F~~~~~L~~i~~~~~~~~i~------ 223 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKI----IRDYCFAECILLENMEFPNSLYYLG------ 223 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCE----ECTTTTTTCTTCCBCCCCTTCCEEC------
T ss_pred hhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceE----eCchhhccccccceeecCCCceEee------
Confidence 34667788888887654 233433 3566777777766432110 0112223334444333321110 11
Q ss_pred HHhhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEE
Q 044247 108 RAELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVL 187 (333)
Q Consensus 108 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 187 (333)
.......+|+.+.+... ...-...++..+..++.+.+...... +....+..+.+++.+
T Consensus 224 -~~~~~~~~l~~i~ip~~------------------~~~i~~~~f~~~~~l~~~~~~~~~~~---i~~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 224 -DFALSKTGVKNIIIPDS------------------FTELGKSVFYGCTDLESISIQNNKLR---IGGSLFYNCSGLKKV 281 (394)
T ss_dssp -TTTTTTCCCCEEEECTT------------------CCEECSSTTTTCSSCCEEEECCTTCE---ECSCTTTTCTTCCEE
T ss_pred -hhhcccCCCceEEECCC------------------ceecccccccccccceeEEcCCCcce---eecccccccccccee
Confidence 11223356666666433 11122345566677777776543222 113344456666666
Q ss_pred EeecCCCCCCCCCCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCcccccc
Q 044247 188 HLFECRNCEHLPPLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEI 267 (333)
Q Consensus 188 ~l~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~ 267 (333)
...... +. -..+..+.+|+.+.+.++ ++.++... +..+.+|+++++.. +++.+.. ..+
T Consensus 282 ~~~~~~-i~-~~~F~~~~~L~~i~l~~~--i~~I~~~a-----------F~~c~~L~~i~lp~--~v~~I~~-----~aF 339 (394)
T 4fs7_A 282 IYGSVI-VP-EKTFYGCSSLTEVKLLDS--VKFIGEEA-----------FESCTSLVSIDLPY--LVEEIGK-----RSF 339 (394)
T ss_dssp EECSSE-EC-TTTTTTCTTCCEEEECTT--CCEECTTT-----------TTTCTTCCEECCCT--TCCEECT-----TTT
T ss_pred ccCcee-ec-cccccccccccccccccc--cceechhh-----------hcCCCCCCEEEeCC--cccEEhH-----Hhc
Confidence 655431 11 112455666777766543 45554432 34566677776643 2332221 223
Q ss_pred ccCCCcceEecccCcCcccCCc-ccCCCCCcceEEE
Q 044247 268 IIMPRLSSLSIQSCRELKALPD-HLLQKSTLQNLEI 302 (333)
Q Consensus 268 ~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l 302 (333)
..|.+|+.+.+.. .++.+.. .+..+++|+.+++
T Consensus 340 ~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 340 RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEE
T ss_pred cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEE
Confidence 4566777776643 2444433 4555677777777
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.39 E-value=5.2e-07 Score=79.50 Aligned_cols=88 Identities=19% Similarity=0.193 Sum_probs=62.2
Q ss_pred CCcccchhcCCCcccEEeecC-CCcccccC-ccccccccccEEecCCCCCccccc-ccccccccCceeeeEEEcCccCCC
Q 044247 1 IEKLPETLCELYNLERVNVSG-CSHLRELP-QGIGKLRKLMYLDNDYTDSLRYLP-VGIGELIRLRRVTKFVVCGGYDRA 77 (333)
Q Consensus 1 ~~~lp~~l~~l~~L~~L~l~~-~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~ 77 (333)
++++|. +..+++|++|+|++ |. +..+| ..++++++|++|++++| .+..++ ..++.+++|++|++++|....
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~--- 94 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALES--- 94 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSC---
T ss_pred CCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccce---
Confidence 456888 88888899999986 66 65555 56888889999999888 455544 457888889999888887754
Q ss_pred CCccc-cccCccCceeEecC
Q 044247 78 CSLGS-LKKLNLLRQCSIDG 96 (333)
Q Consensus 78 ~~~~~-l~~l~~L~~L~l~~ 96 (333)
.+.. +..++ |+.|.+..
T Consensus 95 -~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 95 -LSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp -CCSTTTCSCC-CCEEECCS
T ss_pred -eCHHHcccCC-ceEEEeeC
Confidence 2222 23333 66666654
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=9e-08 Score=84.77 Aligned_cols=166 Identities=16% Similarity=0.046 Sum_probs=93.2
Q ss_pred ccCccccccccccEEecCCCCC----c-----ccccccccccccCceeeeEEEcCccCCCCCccccccCccCceeEecCC
Q 044247 27 ELPQGIGKLRKLMYLDNDYTDS----L-----RYLPVGIGELIRLRRVTKFVVCGGYDRACSLGSLKKLNLLRQCSIDGL 97 (333)
Q Consensus 27 ~lp~~i~~l~~L~~L~l~~~~~----~-----~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 97 (333)
.+..++..+++|+.|.+.+... + ..++..+..+++|+.|++.++.... . ..+ .+++|+.|.+...
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~----l-~~~-~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS----I-GKK-PRPNLKSLEIISG 203 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB----C-CSC-BCTTCSEEEEECS
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce----e-ccc-cCCCCcEEEEecC
Confidence 3455566677888887754311 1 1233335667888888887663221 1 112 2677888777643
Q ss_pred CCCCChhhHHHHhh--cccCCccceEEeecC-CCCCchhhhcccCCcccccccccccC--CCCCCccEEEEeeecCCCCc
Q 044247 98 GGVSDAGEARRAEL--EKKKNLFDLELDFDN-LRDGDEEQAGRRENEEDEDERLLDAL--GPPPNLKELHIHEYRGRRNV 172 (333)
Q Consensus 98 ~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~ 172 (333)
. +.. +.. ..+ ..+++|++|+++.+. ....+. ....+...+ ..+++|+.|++.+|.....
T Consensus 204 ~-l~~--~~l-~~l~~~~lp~L~~L~L~~~~~~~~~~~-----------~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~- 267 (362)
T 2ra8_A 204 G-LPD--SVV-EDILGSDLPNLEKLVLYVGVEDYGFDG-----------DMNVFRPLFSKDRFPNLKWLGIVDAEEQNV- 267 (362)
T ss_dssp B-CCH--HHH-HHHHHSBCTTCCEEEEECBCGGGTCCS-----------CGGGTGGGSCTTTCTTCCEEEEESCTTHHH-
T ss_pred C-CCh--HHH-HHHHHccCCCCcEEEEeccccccccch-----------hHHHHHHHHhcCCCCCcCEEeCCCCCCchH-
Confidence 2 221 222 222 367899999886421 000000 011112222 3478999999988775431
Q ss_pred cCchhhh---cCCCccEEEeecCCCCCC-----CC-CCCCCccccceeccccc
Q 044247 173 VPKNWVM---SLTNLRVLHLFECRNCEH-----LP-PLGKLTSLEDLYIAGMK 216 (333)
Q Consensus 173 ~~~~~~~---~~~~L~~L~l~~~~~~~~-----l~-~~~~l~~L~~L~l~~~~ 216 (333)
. ...+. .+++|+.|+|+.| .+++ ++ .+..+++|+.|++++|.
T Consensus 268 ~-~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 268 V-VEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp H-HHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred H-HHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 1 11222 4789999999887 4443 22 23567899999999886
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=1.2e-05 Score=72.20 Aligned_cols=57 Identities=9% Similarity=0.153 Sum_probs=40.4
Q ss_pred hhcCCCcccEEeecCCCcccccC-ccccccccccEEecCCCCCcccccc-cccccccCceeee
Q 044247 7 TLCELYNLERVNVSGCSHLRELP-QGIGKLRKLMYLDNDYTDSLRYLPV-GIGELIRLRRVTK 67 (333)
Q Consensus 7 ~l~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l 67 (333)
.+.+|++|+.+.+..+ +..++ .++.+|++|+.+++..+ ++.++. .+..+.+|+.+.+
T Consensus 66 AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp TTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred HhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcc
Confidence 4678999999999754 55544 56888999999999754 455543 3666777776654
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.36 E-value=1.4e-07 Score=83.59 Aligned_cols=137 Identities=20% Similarity=0.218 Sum_probs=74.6
Q ss_pred ccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCC--CCCC--CCCccccceecccccc-------c
Q 044247 150 DALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEH--LPPL--GKLTSLEDLYIAGMKS-------V 218 (333)
Q Consensus 150 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--l~~~--~~l~~L~~L~l~~~~~-------l 218 (333)
..+..+|+|+.|+++++.+.. + +. + ..++|+.|++..|. +.. +..+ ..+|+|+.|+|+.+.. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~--l-~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS--I-GK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB--C-CS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHhcCCCCcEEEEeCCCCce--e-cc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 334556788888887765444 4 33 3 37788888887663 221 1112 2577888888753211 1
Q ss_pred ccccccccCCCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCccc-----CCcccCC
Q 044247 219 KRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKA-----LPDHLLQ 293 (333)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~ 293 (333)
+.+... +. ...+|+|+.|++.+|.--.... ..+. ....+|+|+.|+++.| .++. ++..+..
T Consensus 240 ~~l~~~-l~---------~~~~p~Lr~L~L~~~~i~~~~~--~~la-~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~ 305 (362)
T 2ra8_A 240 NVFRPL-FS---------KDRFPNLKWLGIVDAEEQNVVV--EMFL-ESDILPQLETMDISAG-VLTDEGARLLLDHVDK 305 (362)
T ss_dssp GGTGGG-SC---------TTTCTTCCEEEEESCTTHHHHH--HHHH-HCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHH
T ss_pred HHHHHH-Hh---------cCCCCCcCEEeCCCCCCchHHH--HHHH-hCccCCCCCEEECCCC-CCChHHHHHHHhhccc
Confidence 111111 00 2357888888887754211110 0000 0125788888888764 4432 3334445
Q ss_pred CCCcceEEEcccCh
Q 044247 294 KSTLQNLEIWGACH 307 (333)
Q Consensus 294 l~~L~~L~l~~~c~ 307 (333)
+++|+.|++ +.|.
T Consensus 306 l~~L~~L~L-~~n~ 318 (362)
T 2ra8_A 306 IKHLKFINM-KYNY 318 (362)
T ss_dssp HTTCSEEEC-CSBB
T ss_pred CCcceEEEC-CCCc
Confidence 788888888 7664
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.34 E-value=9.8e-09 Score=91.53 Aligned_cols=38 Identities=13% Similarity=-0.070 Sum_probs=19.8
Q ss_pred cccccEEecCCCCCcccc-ccccc-----ccccCceeeeEEEcCc
Q 044247 35 LRKLMYLDNDYTDSLRYL-PVGIG-----ELIRLRRVTKFVVCGG 73 (333)
Q Consensus 35 l~~L~~L~l~~~~~~~~~-p~~i~-----~l~~L~~L~l~~~~~~ 73 (333)
+++|+.|++++|. +... ...+. ...+|++|++++|...
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 114 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLD 114 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCC
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCC
Confidence 4567777777773 3321 11121 1256777777666543
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=1.3e-07 Score=74.23 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=47.5
Q ss_pred CCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCC--CCCCCC----CccccceecccccccccccccccCCC
Q 044247 156 PNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEH--LPPLGK----LTSLEDLYIAGMKSVKRVGNEFLGVE 229 (333)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--l~~~~~----l~~L~~L~l~~~~~l~~i~~~~~~~~ 229 (333)
.+|+.|++++|......+ ..+..+++|+.|+|++|..+++ +..++. +++|++|++++|..++.-.-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL--~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~---- 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF--DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA---- 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGG--GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH----
T ss_pred ceEeEEeCcCCCccHHHH--HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH----
Confidence 356666666655333111 2234566666666666654443 111222 2456777777766554432211
Q ss_pred CCCCCCccccCCCccEEeeccCcccccc
Q 044247 230 SDTDGSSVIAFPKLKRLRFWSMSELEEW 257 (333)
Q Consensus 230 ~~~~~~~~~~l~~L~~L~l~~~~~L~~~ 257 (333)
+..+++|++|++++|+++++.
T Consensus 135 -------L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 135 -------LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -------GGGCTTCCEEEEESCTTCCCH
T ss_pred -------HhcCCCCCEEECCCCCCCCch
Confidence 345677777777777766553
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.26 E-value=3.6e-06 Score=74.11 Aligned_cols=98 Identities=20% Similarity=0.173 Sum_probs=61.8
Q ss_pred EEEeee-cCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCcc
Q 044247 161 LHIHEY-RGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSV 237 (333)
Q Consensus 161 L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~ 237 (333)
++.++. .... + |. +..+++|+.|+|+++..++.++. ++.+++|+.|+|++|. ++.++... +
T Consensus 13 v~~~~~n~l~~--i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~-----------~ 76 (347)
T 2ifg_A 13 LRCTRDGALDS--L-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDA-----------F 76 (347)
T ss_dssp EECCSSCCCTT--T-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTG-----------G
T ss_pred EEcCCCCCCCc--c-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHH-----------h
Confidence 455554 4444 6 66 77777888888886225565554 7778888888888876 66555432 4
Q ss_pred ccCCCccEEeeccCccccccccCCccccccccCCCcceEecccC
Q 044247 238 IAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSC 281 (333)
Q Consensus 238 ~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c 281 (333)
..+++|+.|+|+++ +|..++ ..+.....|+.|++.++
T Consensus 77 ~~l~~L~~L~l~~N-~l~~~~------~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 77 HFTPRLSRLNLSFN-ALESLS------WKTVQGLSLQELVLSGN 113 (347)
T ss_dssp GSCSCCCEEECCSS-CCSCCC------STTTCSCCCCEEECCSS
T ss_pred cCCcCCCEEeCCCC-ccceeC------HHHcccCCceEEEeeCC
Confidence 57778888888874 454433 21222233788887764
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.07 E-value=0.00049 Score=61.50 Aligned_cols=107 Identities=12% Similarity=0.167 Sum_probs=63.6
Q ss_pred hhcCCCccEEEeecCCCCCCCC--CCCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeeccCcccc
Q 044247 178 VMSLTNLRVLHLFECRNCEHLP--PLGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFWSMSELE 255 (333)
Q Consensus 178 ~~~~~~L~~L~l~~~~~~~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~ 255 (333)
|..+.+|+.+.+.... ..+. .+.++++|+.+.+.+. ++.++... +..+.+|+++.+.. +++
T Consensus 261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~a-----------F~~c~~L~~i~lp~--~v~ 323 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSSR--ITELPESV-----------FAGCISLKSIDIPE--GIT 323 (394)
T ss_dssp TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT--CCEECTTT-----------TTTCTTCCEEECCT--TCC
T ss_pred eeecccccEEeccccc--ceecCcccccccccccccCCCc--ccccCcee-----------ecCCCCcCEEEeCC--ccc
Confidence 3345666666665431 1222 2556677777776532 55555443 45667777777754 233
Q ss_pred ccccCCccccccccCCCcceEecccCcCcccCCc-ccCCCCCcceEEEcccChhh
Q 044247 256 EWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPD-HLLQKSTLQNLEIWGACHIL 309 (333)
Q Consensus 256 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~c~~l 309 (333)
.+. ...+..|.+|+++.+-. .++.+.. .+..+++|+.+++ .+....
T Consensus 324 ~I~-----~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~-~~~~~~ 370 (394)
T 4gt6_A 324 QIL-----DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEY-SGSRSQ 370 (394)
T ss_dssp EEC-----TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEE-SSCHHH
T ss_pred Eeh-----HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEE-CCceee
Confidence 322 12355678899998853 4666654 5677899999999 765443
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.65 E-value=1.6e-05 Score=63.24 Aligned_cols=118 Identities=13% Similarity=0.020 Sum_probs=82.9
Q ss_pred cchhcCCCcccEEeecCC-Ccc----cccCccccccccccEEecCCCCCccc-----ccccccccccCceeeeEEEcCcc
Q 044247 5 PETLCELYNLERVNVSGC-SHL----RELPQGIGKLRKLMYLDNDYTDSLRY-----LPVGIGELIRLRRVTKFVVCGGY 74 (333)
Q Consensus 5 p~~l~~l~~L~~L~l~~~-~~~----~~lp~~i~~l~~L~~L~l~~~~~~~~-----~p~~i~~l~~L~~L~l~~~~~~~ 74 (333)
...+...+.|++|++++| ... ..+...+...++|++|++++|. +.. +...+...++|++|++++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 345677899999999999 622 2355567778999999999994 432 33445667899999999987753
Q ss_pred CCCC---CccccccCccCceeEe--cCCCCCCC-hhhHHHHhhcccCCccceEEeecC
Q 044247 75 DRAC---SLGSLKKLNLLRQCSI--DGLGGVSD-AGEARRAELEKKKNLFDLELDFDN 126 (333)
Q Consensus 75 ~~~~---~~~~l~~l~~L~~L~l--~~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~ 126 (333)
.. ....+...+.|+.|++ ... .+.+ ....+...+...++|++|++++|.
T Consensus 108 --~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 --SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp --HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred --HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 11 2445677788999998 432 2332 222345566677899999999985
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.59 E-value=0.0012 Score=58.86 Aligned_cols=125 Identities=15% Similarity=0.191 Sum_probs=80.6
Q ss_pred ccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEeecCCCCCCCCC--CCCCccccceecccccccccccccccC
Q 044247 150 DALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHLFECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLG 227 (333)
Q Consensus 150 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~ 227 (333)
.+|..+..|+.+.+...... +....+..+.+|+.+.+... +..++. +.++.+|+.+++..+ ++.++...
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~---I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~a-- 329 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS---IGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDDA-- 329 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE---ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTT--
T ss_pred ceeeecccccEEecccccce---ecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHhH--
Confidence 46778889999888653322 21445667899999998753 445554 888999999999764 67776544
Q ss_pred CCCCCCCCccccCCCccEEeeccCccccccccCCccccccccCCCcceEecccCcCcccCCcccCCCCCcceEEE
Q 044247 228 VESDTDGSSVIAFPKLKRLRFWSMSELEEWDLGTAIKGEIIIMPRLSSLSIQSCRELKALPDHLLQKSTLQNLEI 302 (333)
Q Consensus 228 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 302 (333)
+..+.+|+++.+.. +++.+. . ..+..|.+|+.+.+.+.... + ..+....+|+.+.+
T Consensus 330 ---------F~~C~~L~~i~ip~--sv~~I~--~---~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 330 ---------FAGCEQLERIAIPS--SVTKIP--E---SAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPV 385 (394)
T ss_dssp ---------TTTCTTCCEEEECT--TCCBCC--G---GGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC-----
T ss_pred ---------hhCCCCCCEEEECc--ccCEEh--H---hHhhCCCCCCEEEECCceee--h-hhhhccCCCCEEEe
Confidence 56788999999864 343332 1 23557899999998864321 1 23445677888777
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=1.5e-05 Score=63.51 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=56.3
Q ss_pred hhhHHHHhhcccCCccceEEeec-CCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCc---cCchhh
Q 044247 103 AGEARRAELEKKKNLFDLELDFD-NLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNV---VPKNWV 178 (333)
Q Consensus 103 ~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~ 178 (333)
..+.+...+...+.|++|++++| .+.+. ....+...+...++|++|++++|...... + ...+
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~-------------g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l-~~~L 89 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVP-------------TLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL-AEML 89 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHH-------------HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH-HHHH
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHH-------------HHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH-HHHH
Confidence 34455566777788888888877 64321 22334455566677888888877654310 1 1223
Q ss_pred hcCCCccEEEeecCCCCCC-----C-CCCCCCccccceec--cccc
Q 044247 179 MSLTNLRVLHLFECRNCEH-----L-PPLGKLTSLEDLYI--AGMK 216 (333)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~-----l-~~~~~l~~L~~L~l--~~~~ 216 (333)
...++|+.|+|++|. +++ + ..+...++|++|++ ++|.
T Consensus 90 ~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 90 KVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 345678888887773 332 1 11344456666666 4444
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.19 E-value=0.00024 Score=59.73 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=28.2
Q ss_pred CCCcccEEeecCCCccc--ccCccccccccccEEecCCCCCcccccccccccc--cCceeeeEEEcC
Q 044247 10 ELYNLERVNVSGCSHLR--ELPQGIGKLRKLMYLDNDYTDSLRYLPVGIGELI--RLRRVTKFVVCG 72 (333)
Q Consensus 10 ~l~~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~--~L~~L~l~~~~~ 72 (333)
++++|+.|++++|...+ .+|..+..+++|+.|++++| .+..+ ..+..+. +|++|++.+|..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcC
Confidence 34555555555555211 23344445555555555555 33332 1233333 555555554443
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.09 E-value=0.018 Score=50.79 Aligned_cols=32 Identities=6% Similarity=-0.081 Sum_probs=16.2
Q ss_pred cccEEeecCCCcccccCccccccccccEEecCCC
Q 044247 13 NLERVNVSGCSHLRELPQGIGKLRKLMYLDNDYT 46 (333)
Q Consensus 13 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 46 (333)
+|+.+.+..+ +..+........+|+.+.+..+
T Consensus 92 ~l~~i~~~~~--l~~I~~~aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 92 KLQSYTGMER--VKKFGDYVFQGTDLDDFEFPGA 123 (379)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCCCSEEECCTT
T ss_pred CCceEECCce--eeEeccceeccCCcccccCCCc
Confidence 4565555433 3344433223346777777543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.06 E-value=0.00037 Score=58.55 Aligned_cols=60 Identities=27% Similarity=0.382 Sum_probs=35.6
Q ss_pred CCCCccEEEEeeecCCCCccC--chhhhcCCCccEEEeecCCCCCCCCCCCCCc--cccceeccccc
Q 044247 154 PPPNLKELHIHEYRGRRNVVP--KNWVMSLTNLRVLHLFECRNCEHLPPLGKLT--SLEDLYIAGMK 216 (333)
Q Consensus 154 ~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~l~~~~~l~--~L~~L~l~~~~ 216 (333)
.+++|+.|++++|.... +. +..+..+++|+.|+|++| .+..+..++.+. +|++|++++|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCc
Confidence 35677777777766655 30 234456777777777776 333333333333 67777777776
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.77 E-value=0.031 Score=49.32 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=58.2
Q ss_pred hhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeeecCCCCccCchhhhcCCCccEEEe
Q 044247 110 ELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEYRGRRNVVPKNWVMSLTNLRVLHL 189 (333)
Q Consensus 110 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 189 (333)
.+..+..|+.+.+..+ ...-...++..+.+|+.+.+...- .. ++...+..+.+|+.+.+
T Consensus 235 ~f~~~~~L~~i~lp~~------------------v~~I~~~aF~~~~~l~~i~l~~~i-~~--i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN------------------VTSIGSFLLQNCTALKTLNFYAKV-KT--VPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp TTTTCSSCCEEEECTT------------------CCEECTTTTTTCTTCCEEEECCCC-SE--ECTTTTTTCTTCCEEEE
T ss_pred cccCCccceEEEcCCC------------------ccEeCccccceeehhccccccccc-ee--ccccccccccccccccc
Confidence 4455667777776544 222223456666777777765421 11 21334556777777777
Q ss_pred ecCCCCCCCCC--CCCCccccceecccccccccccccccCCCCCCCCCccccCCCccEEeec
Q 044247 190 FECRNCEHLPP--LGKLTSLEDLYIAGMKSVKRVGNEFLGVESDTDGSSVIAFPKLKRLRFW 249 (333)
Q Consensus 190 ~~~~~~~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 249 (333)
.++ .++.++. +.+|.+|+.+.+.++ ++.++... +..+.+|+++.+.
T Consensus 294 ~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~a-----------F~~C~~L~~i~ip 341 (379)
T 4h09_A 294 DNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYA-----------FKNCKALSTISYP 341 (379)
T ss_dssp CCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTT-----------TTTCTTCCCCCCC
T ss_pred ccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHHHH-----------hhCCCCCCEEEEC
Confidence 654 3343433 666777777777543 55555433 3455666666664
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.83 E-value=0.17 Score=37.13 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=5.2
Q ss_pred cCCCccEEeecc
Q 044247 239 AFPKLKRLRFWS 250 (333)
Q Consensus 239 ~l~~L~~L~l~~ 250 (333)
.+++|+.|+|.+
T Consensus 53 ~l~~L~~L~L~~ 64 (130)
T 3rfe_A 53 ALPALRTAHLGA 64 (130)
T ss_dssp GCTTCCEEECCS
T ss_pred hccccCEEEecC
Confidence 344444444444
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.69 E-value=0.053 Score=43.03 Aligned_cols=115 Identities=13% Similarity=0.050 Sum_probs=75.1
Q ss_pred hcCCCcccEEeecCCCccc-----ccCccccccccccEEecCCCCCccc-----ccccccccccCceeeeEEEcCccCCC
Q 044247 8 LCELYNLERVNVSGCSHLR-----ELPQGIGKLRKLMYLDNDYTDSLRY-----LPVGIGELIRLRRVTKFVVCGGYDRA 77 (333)
Q Consensus 8 l~~l~~L~~L~l~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~-----~p~~i~~l~~L~~L~l~~~~~~~~~~ 77 (333)
+..-+.|++|++.++..++ .+-.++..-+.|+.|++++|. +.. +...+..-..|++|++..|.+.. .
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~--~ 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTP--E 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCH--H
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCH--H
Confidence 4456789999999862242 355567778899999999994 432 33335567789999999988763 1
Q ss_pred C---CccccccCccCceeEecCCC--CCCC-hhhHHHHhhcccCCccceEEeec
Q 044247 78 C---SLGSLKKLNLLRQCSIDGLG--GVSD-AGEARRAELEKKKNLFDLELDFD 125 (333)
Q Consensus 78 ~---~~~~l~~l~~L~~L~l~~~~--~~~~-~~~~~~~~l~~~~~L~~L~l~~~ 125 (333)
. ....+..-+.|+.|.+.... .+.+ ....+...+..-+.|++|+++.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 1 22345555678888886421 2222 11234455666678999998766
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.42 E-value=0.044 Score=43.49 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=22.2
Q ss_pred hhcccCCccceEEeecCCCCCchhhhcccCCcccccccccccCCCCCCccEEEEeee
Q 044247 110 ELEKKKNLFDLELDFDNLRDGDEEQAGRRENEEDEDERLLDALGPPPNLKELHIHEY 166 (333)
Q Consensus 110 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 166 (333)
.+..-+.|++|+++.|.+.+. -...+.+++..-..|+.|+++++
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~-------------Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPE-------------LLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHH-------------HHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHhcCCccCeEecCCCcCCHH-------------HHHHHHHHHhhCCceeEEECCCC
Confidence 333345666666666654321 22333444555555666666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.74 E-value=0.26 Score=36.10 Aligned_cols=54 Identities=22% Similarity=0.111 Sum_probs=35.6
Q ss_pred EEeecCCCccc--ccCccccccccccEEecCCCCCccccccc-ccccccCceeeeEEEcCc
Q 044247 16 RVNVSGCSHLR--ELPQGIGKLRKLMYLDNDYTDSLRYLPVG-IGELIRLRRVTKFVVCGG 73 (333)
Q Consensus 16 ~L~l~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 73 (333)
+++-++.. +. .+|..+ -++|++|+|++| .+..+|.+ +..+++|+.|++.+|...
T Consensus 12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSC-CCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCC-CccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 55555555 55 677533 236888888888 56666654 567788888888776543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.05 E-value=30 Score=23.57 Aligned_cols=15 Identities=27% Similarity=0.098 Sum_probs=7.3
Q ss_pred hhhcCCCccEEEeec
Q 044247 177 WVMSLTNLRVLHLFE 191 (333)
Q Consensus 177 ~~~~~~~L~~L~l~~ 191 (333)
.|..+.+|+.+.+.+
T Consensus 38 aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 38 MFSGCTALEKLILTG 52 (100)
T ss_dssp SSTTCTTCCCEEECC
T ss_pred HHhccCCccEEEEcC
Confidence 344455555555543
Done!