BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044248
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native)
pdb|2B2H|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (as)
pdb|2B2I|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (Ma)
pdb|2B2J|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (xe)
Length = 399
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/425 (27%), Positives = 171/425 (40%), Gaps = 51/425 (12%)
Query: 49 DSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXX 108
+ ++L S LV M G AG VR KN +N++ + +
Sbjct: 5 NVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFG 64
Query: 109 TPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSF 168
+G IG N+AL S D + +YQ ER + ++++ S+
Sbjct: 65 NDISGIIGGLNYALLS-GVKGEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSAL 123
Query: 169 LTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGP 228
FVY +HW W GW L G +DFAG VVH+ G A L A G
Sbjct: 124 WLTFVYAPFAHWLWG-GGW---------LAKLGALDFAGGMVVHISSGFAALAVAMTIGK 173
Query: 229 RIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIG 288
R G + S + HS L ++G +LWFGW+GFN GS L+A + AI
Sbjct: 174 RAGFEEYS----IEPHSIPLTLIGAALLWFGWFGFNGGS---ALAANDV--------AIN 218
Query: 289 RXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCG 348
G + G + +G + G AAIT V+ AIV G
Sbjct: 219 AVVVTNTSAAVAGFVWMVIGW--IKGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIG 276
Query: 349 FVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRN-SPYGLFMGGGGK 407
VA +V K K D+ L+A +HG G WG + +L + Y + G +
Sbjct: 277 LVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFGNPQ 336
Query: 408 LLAAHVIQI-----------LVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRH 456
LL + +I + L++A V A +G LR+S ++E G+DL++H
Sbjct: 337 LLVSQLIAVASTTAYAFLVTLILAKAVDAAVG-----------LRVSSQEEYVGLDLSQH 385
Query: 457 GGFAY 461
AY
Sbjct: 386 EEVAY 390
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/431 (26%), Positives = 171/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSAACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGFNAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + +HG CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 412
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/431 (26%), Positives = 171/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGFNAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + +HG CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli.
pdb|1XQF|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli
Length = 418
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/431 (26%), Positives = 171/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGFNAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + +HG CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NOP|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|3C1G|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/431 (26%), Positives = 171/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGFNAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + +HG CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|B Chain B, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|C Chain C, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|D Chain D, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|E Chain E, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|F Chain F, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 415
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/431 (26%), Positives = 171/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 18 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 76
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 77 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 136
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VVH+ IAGL
Sbjct: 137 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVHINAAIAGLV 186
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS T +
Sbjct: 187 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGFNAGS-------AGTANEI 235
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 236 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 290
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + +HG CG G I T + +
Sbjct: 291 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS----- 345
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 346 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 402
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 403 LDVNSHGENAY 413
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 170/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSAACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+G N GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGANAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + +HG CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 170/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VV + IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVEINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGFNAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + +HG CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 170/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+G N GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGANAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + +HG CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 170/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VV + IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVFINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGFNAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + +HG CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NPJ|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 170/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGFNAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + + G CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVFGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 170/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VV + IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVAINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGFNAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + +HG CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 170/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVHINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGFNAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + + G CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVAGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 112/431 (25%), Positives = 169/431 (39%), Gaps = 53/431 (12%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXX 107
D+ +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 108 XTPSNGFIGR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVA 161
N F G N L + S + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 162 YLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLW 221
LI+ Y ++H W G LL G +DFAG VV + IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVAINAAIAGLV 177
Query: 222 GAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHY 281
GAY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS T +
Sbjct: 178 GAYLIGKRVGF----GKEAFKPHNLPMVFTGTAILYIGWFGFNAGS-------AGTANEI 226
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
+ + FG+ L G ++ C+G + G +T C +
Sbjct: 227 AALAFVNT-----VVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + + G CG G I T + +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVAGVCGIVGCIMTGIFAASS----- 336
Query: 401 FMGGGG---KLLAAHVIQILVVAGWVSATM---GPLFFILHKLKL----LRISPEDEMAG 450
+GG G + H Q+LV ++ T+ G + FI +KL LR+ E E G
Sbjct: 337 -LGGVGFAEGVTMGH--QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREG 393
Query: 451 MDLTRHGGFAY 461
+D+ HG AY
Sbjct: 394 LDVNSHGENAY 404
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
pdb|1U7C|A Chain A, Crystal Structure Of Amtb From E.Coli With Methyl
Ammonium.
pdb|1U7G|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
Length = 385
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 130/342 (38%), Gaps = 34/342 (9%)
Query: 56 SAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFI 115
+A ++F G A+ G +R KN ++ LT V N F
Sbjct: 17 TALVLFXTIPGIALFYGGLIRGKNVLS-XLTQVTVTFALVCILWVVYGYSLASGEGNNFF 75
Query: 116 GR------HNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFL 169
G N L + S + Y + +Q ER +F A LI+
Sbjct: 76 GNINWLXLKNIELTAVXGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVW 135
Query: 170 TGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPR 229
Y ++H W G LL G +DFAG VVH+ IAGL GAY+ G R
Sbjct: 136 LTLSYIPIAHXVWG----------GGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKR 185
Query: 230 IGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGR 289
+G G+ + H+ V GT +L+ GW+GFN GS T + + +
Sbjct: 186 VGF----GKEAFKPHNLPXVFTGTAILYIGWFGFNAGS-------AGTANEIAALAFVNT 234
Query: 290 XXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGF 349
FG+ L G ++ C+G + G +T C + A++ G
Sbjct: 235 -----VVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGV 289
Query: 350 VAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTAL 390
VA + L L + DDP + +HG CG G I T +
Sbjct: 290 VAGLAGLWGVTXLKRLLRVDDPCDVFGVHGVCGIVGCIXTGI 331
>pdb|1X3Z|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex
Length = 335
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 347 CGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGG-CGAWGVIFTALL 391
CG V C + +Y+DP++ + G CG W +FT +L
Sbjct: 150 CGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLIL 195
>pdb|1X3W|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex
Length = 335
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 347 CGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGG-CGAWGVIFTALL 391
CG V C + +Y+DP++ + G CG W +FT +L
Sbjct: 150 CGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLIL 195
>pdb|3HD6|A Chain A, Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
Length = 490
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 13/166 (7%)
Query: 190 ASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLV 249
A N LL V D GS +H G GL I R + Q+ + S
Sbjct: 168 AVNEFILLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVY-QSDLFA 226
Query: 250 VLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXXXXXXFGK 309
++GT LW W FN +S + H +AI K
Sbjct: 227 MIGTLFLWMYWPSFNSA-----ISYHGDSQHR---AAINTYCSLAACVLTSVAISSALHK 278
Query: 310 RILSGHWNVTDVCNGLL-GGFAAITAGCSVVEPWAAIVCGFVAAVV 354
+ G ++ + N L GG A TA ++ P+ A++ GFV ++
Sbjct: 279 K---GKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGII 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,511,995
Number of Sequences: 62578
Number of extensions: 521072
Number of successful extensions: 1915
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1805
Number of HSP's gapped (non-prelim): 26
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)