Query 044248
Match_columns 489
No_of_seqs 150 out of 1358
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 12:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0682 Ammonia permease [Inor 100.0 3E-111 6E-116 875.5 28.4 419 26-465 8-446 (500)
2 COG0004 AmtB Ammonia permease 100.0 2E-109 4E-114 853.2 34.7 395 46-466 2-407 (409)
3 TIGR00836 amt ammonium transpo 100.0 2E-104 3E-109 830.8 35.1 389 50-461 1-403 (403)
4 TIGR03644 marine_trans_1 proba 100.0 1E-104 3E-109 830.4 33.8 386 47-463 2-403 (404)
5 PRK10666 ammonium transporter; 100.0 1E-103 2E-108 827.7 31.6 391 44-462 26-427 (428)
6 PF00909 Ammonium_transp: Ammo 100.0 1.7E-96 4E-101 773.0 13.0 390 51-461 1-399 (399)
7 KOG3796 Ammonium transporter R 100.0 8.8E-36 1.9E-40 299.3 19.3 284 134-448 118-423 (442)
8 COG1079 Uncharacterized ABC-ty 66.1 14 0.00029 38.3 6.1 117 338-456 59-189 (304)
9 PF00909 Ammonium_transp: Ammo 63.1 54 0.0012 35.0 10.3 139 47-229 187-328 (399)
10 PF11085 YqhR: Conserved membr 62.8 22 0.00048 33.8 6.3 75 343-438 22-96 (173)
11 PF01148 CTP_transf_1: Cytidyl 44.8 17 0.00037 35.4 2.6 64 315-378 160-236 (259)
12 PF04657 DUF606: Protein of un 40.6 1.3E+02 0.0029 27.2 7.6 86 341-442 30-116 (138)
13 TIGR00836 amt ammonium transpo 40.2 2.6E+02 0.0055 30.2 10.8 138 48-229 194-333 (403)
14 PLN02594 phosphatidate cytidyl 39.3 14 0.00031 38.8 1.2 38 341-378 235-276 (342)
15 TIGR03644 marine_trans_1 proba 36.7 3.1E+02 0.0068 29.6 10.8 138 48-227 203-344 (404)
16 PRK11624 cdsA CDP-diglyceride 35.2 13 0.00027 38.1 0.0 65 314-378 182-258 (285)
17 COG4120 ABC-type uncharacteriz 33.3 17 0.00037 36.9 0.6 55 313-369 30-87 (293)
18 PF12270 Cyt_c_ox_IV: Cytochro 32.0 79 0.0017 29.0 4.6 22 204-225 34-55 (137)
19 PRK10666 ammonium transporter; 30.5 7E+02 0.015 27.2 12.3 136 49-228 219-356 (428)
20 PRK10478 putative PTS system f 29.3 1.9E+02 0.0041 30.8 7.6 69 365-436 267-336 (359)
21 KOG2493 Na+/Pi symporter [Inor 28.9 8.5E+02 0.018 27.1 12.4 72 288-359 102-184 (512)
22 PF14023 DUF4239: Protein of u 27.1 3.4E+02 0.0075 25.8 8.5 62 39-101 126-188 (209)
23 COG0575 CdsA CDP-diglyceride s 25.8 44 0.00095 33.6 2.1 76 303-378 148-241 (265)
24 PF02653 BPD_transp_2: Branche 25.7 55 0.0012 32.3 2.7 59 312-370 24-84 (267)
25 PRK10457 hypothetical protein; 25.4 62 0.0013 27.0 2.5 70 342-420 4-74 (82)
26 PF06570 DUF1129: Protein of u 23.3 98 0.0021 29.8 3.9 112 245-369 77-205 (206)
27 KOG2765 Predicted membrane pro 21.9 1.8E+02 0.0039 31.2 5.6 98 289-386 184-292 (416)
28 COG3965 Predicted Co/Zn/Cd cat 21.2 3.9E+02 0.0084 27.5 7.5 127 217-370 63-198 (314)
29 PRK10712 PTS system fructose-s 20.8 2.7E+02 0.0059 31.4 7.2 123 246-391 238-363 (563)
30 PF14074 DUF4257: Protein of u 20.3 20 0.00044 30.0 -1.3 58 296-353 4-74 (82)
No 1
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-111 Score=875.53 Aligned_cols=419 Identities=51% Similarity=0.878 Sum_probs=381.1
Q ss_pred hhHHHHHHHHHhhhhcccc-cccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044248 26 AASLICSQLEAINNKFSDT-AYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFA 104 (489)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~-~~~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~ 104 (489)
.++..+++.....+...+. -+.-|+.|++.++++||+|||||+|||+|+||+||++|+|+||++|.+++.+.||++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~y~~dn~~~l~sss~lvF~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~Gys 87 (500)
T KOG0682|consen 8 TATYIRGAGGNVLTKFTPNAYDLDNTAWLLSSSFLVFTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYS 87 (500)
T ss_pred ccccccccccccccccCcchhcCCchhhHHHHHHHHHHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 4444444333223333333 344677888889999999999999999999999999999999999999999999999999
Q ss_pred hhccCC-CCccccccc-cccccCCCC------CchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhccc
Q 044248 105 FAFGTP-SNGFIGRHN-FALKSFPTS------NFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPV 176 (489)
Q Consensus 105 lafG~~-~~g~iG~~~-f~l~~~~~~------~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~ 176 (489)
|+||+. .|+|||... |++.+.+.+ .+++.+++||++||+++++|++|+++||+|+++|++|+.+|.++||||
T Consensus 88 lAFg~~~~n~FiG~~~~F~~~~~~g~~~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~tlVY~~ 167 (500)
T KOG0682|consen 88 LAFGDSPSNGFIGKLDFFGLRNVSGDPSSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTTLVYCP 167 (500)
T ss_pred eeccCCCCCCceeeccccccccCCCCcCCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHhcccc
Confidence 999987 799999965 777766422 248999999999999999999999999999999999999999999999
Q ss_pred ccceeeccccccccccCCCcccCCceeeecCceEeehhhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHH
Q 044248 177 VSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFML 256 (489)
Q Consensus 177 vahWvW~~~GWL~~~~~~~~~~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lL 256 (489)
++||+|+++||++ ++|++|||||++||++||++||++++++|||++||+ ++.+++||||+++++||++||
T Consensus 168 ~a~W~W~~~Gw~~---------~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~-~~~~~~~~hsv~~v~LGt~lL 237 (500)
T KOG0682|consen 168 VAHWVWSPNGWLY---------KLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFF-GKAIALRPHSVTLVVLGTFLL 237 (500)
T ss_pred cceeeecCCceee---------ecceeeccCCceeEecccHHHHHHHHHhCCccCccc-ccccccCCCchhHHHHHHHHH
Confidence 9999999999998 589999999999999999999999999999999984 334459999999999999999
Q ss_pred HHHhhhcCcccchhhhccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCC
Q 044248 257 WFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGC 336 (489)
Q Consensus 257 w~GW~gFN~gs~~~~~~~~~~~~~~g~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~ 336 (489)
||||++||+||.+.++ . +.+ +|+++||+||++.|+++|++++++++|||++..+|||+|+|||||||+|
T Consensus 238 WfGWl~FN~GS~~~i~-------~-~~~---~~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc 306 (500)
T KOG0682|consen 238 WFGWLGFNGGSFYAIN-------L-RSW---ARAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGC 306 (500)
T ss_pred HHHHHccCCccccccc-------c-hhH---HHHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCC
Confidence 9999999999998872 1 111 3999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHhhHHHHHHHhhhccccccccccCccccccchhhHHHHHHHHHhcCC----------CCccccccCch
Q 044248 337 SVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRN----------SPYGLFMGGGG 406 (489)
Q Consensus 337 ~~v~pw~AliiG~iag~v~~~~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~----------~~~G~~~gg~~ 406 (489)
++++||+|+++|++++++|..+.++++|+|||||+|++++||+||+||.|++|+|+.+. .+.|+++++++
T Consensus 307 ~~v~pWaAiviG~va~~~~~~~~kL~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~~~~~G~~~~~~~ 386 (500)
T KOG0682|consen 307 GVVEPWAAIVIGAVAGLVCNAANKLKERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTIARISGLWMGHGF 386 (500)
T ss_pred cccCcHHHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCccCCCceeecchH
Confidence 99999999999999999999999999999999999999999999999999999999871 35799999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhccc-CCCCHHHHhcCCcccccccccCCCCC
Q 044248 407 KLLAAHVIQILVVAGWVSATMGPLFFILHKLKL-LRISPEDEMAGMDLTRHGGFAYVYHD 465 (489)
Q Consensus 407 ~~l~~Ql~g~~vi~~ws~~~~~i~~~il~~~~~-LRv~~e~E~~GlD~~~hg~~ay~~~~ 465 (489)
+|++.|+.+++++.+|++++++++++++||+++ |||++|||+.|+|..||||.+|++.+
T Consensus 387 kqLg~Qla~i~ai~~ws~~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~~ 446 (500)
T KOG0682|consen 387 KQLGYQLAGILAIAAWSAVVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYHE 446 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchhh
Confidence 999999999999999999999999999999999 99999999999999999999998755
No 2
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-109 Score=853.18 Aligned_cols=395 Identities=34% Similarity=0.608 Sum_probs=364.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccc-cccccc
Q 044248 46 YAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRH-NFALKS 124 (489)
Q Consensus 46 ~~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~-~f~l~~ 124 (489)
+..|+.|+|+|++|||+|||||+|+|+|++|+||+.|+++||+++++++++.|+++||+++||++.++|+|+. .+++.+
T Consensus 2 ~~~d~~wml~sa~LV~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~~~~~ 81 (409)
T COG0004 2 DSGDTAWMLLSAALVLLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQFFLNG 81 (409)
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHHhccC
Confidence 5689999999999999999999999999999999999999999999999999999999999998778999984 444444
Q ss_pred CCC-------CCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcc
Q 044248 125 FPT-------SNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLL 197 (489)
Q Consensus 125 ~~~-------~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~ 197 (489)
... ..+++.+++||++||+++++|+||+++||+||++|++|+++|.++||||++||+|+++|||.
T Consensus 82 ~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~-------- 153 (409)
T COG0004 82 LGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLA-------- 153 (409)
T ss_pred ccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHH--------
Confidence 311 23678999999999999999999999999999999999999999999999999999888997
Q ss_pred cCCceeeecCceEeehhhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhccccC
Q 044248 198 FGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNT 277 (489)
Q Consensus 198 ~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~~ 277 (489)
++|++|||||+|||..+|++||+++++||||+++ ++..+||||+|++++|+.||||||||||+||++..
T Consensus 154 -~~g~~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~----~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~------ 222 (409)
T COG0004 154 -LLGALDFAGGTVVHINAGFAALAAALVLGKRIGG----KPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAA------ 222 (409)
T ss_pred -hcCceecCCCceEEechhHHHHHHHHHeecccCC----CCCCCCCCchhHHHHHHHHHHHHHccCCccchhhh------
Confidence 5899999999999999999999999999999973 23348999999999999999999999999999887
Q ss_pred CCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCCCCcchhHHHHHHHhhHHHHHH
Q 044248 278 GSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIA 357 (489)
Q Consensus 278 ~~~~g~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~~~v~pw~AliiG~iag~v~~~ 357 (489)
+ ..+..+++||++|+++|+++|++++|+++||+|+..+|||++||||+|||+|++|+||+|++||+++|++|+.
T Consensus 223 -~-----~~a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~ 296 (409)
T COG0004 223 -N-----GVAALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYF 296 (409)
T ss_pred -h-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHH
Confidence 2 3578899999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred Hh-hhccccccccccCccccccchhhHHHHHHHHHhcCC--CCccccccCchHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 044248 358 CN-KLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRN--SPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFIL 434 (489)
Q Consensus 358 ~~-~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~--~~~G~~~gg~~~~l~~Ql~g~~vi~~ws~~~~~i~~~il 434 (489)
.. .+++|+|+|||+|++++||++|+||+|++|+|+++. ...|.++ ++.+|++.|+++++++..|++++++++++++
T Consensus 297 a~~~lk~~l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~~~~~~G~~~-~~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl 375 (409)
T COG0004 297 AVKLLKKKLGVDDALDVFGVHGVGGIVGAILTGIFAAPAVGGGGGLFY-GGGVQLGVQLLGVLVTIVYAFVVTFIILKVL 375 (409)
T ss_pred HHHHHHHhcCCCCcccceeccchhhHHHHHHHHHhcCccccccCcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 577789999999999999999999999999999973 2335444 5789999999999999999999999999999
Q ss_pred HhcccCCCCHHHHhcCCcccccccccCCCCCC
Q 044248 435 HKLKLLRISPEDEMAGMDLTRHGGFAYVYHDD 466 (489)
Q Consensus 435 ~~~~~LRv~~e~E~~GlD~~~hg~~ay~~~~~ 466 (489)
|++.+|||+||||++|||.+||||++|+++..
T Consensus 376 ~~~~gLRvs~eeE~~GlD~~~Hge~aY~~~~~ 407 (409)
T COG0004 376 KLIIGLRVSEEEELEGLDISEHGESAYSEEEA 407 (409)
T ss_pred HhccCCCCCHHHHhhCCChHHhcccccccccc
Confidence 99999999999999999999999999997653
No 3
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=100.00 E-value=1.6e-104 Score=830.75 Aligned_cols=389 Identities=48% Similarity=0.835 Sum_probs=360.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--CCCccccccccccccCCC
Q 044248 50 STYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGT--PSNGFIGRHNFALKSFPT 127 (489)
Q Consensus 50 ~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~--~~~g~iG~~~f~l~~~~~ 127 (489)
+.|+++|++|||+|||||+|+|+|+||+||++|+++||++|+++++++||++||+++||+ +.++|+|+..+++.+.+.
T Consensus 1 ~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~n~l~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~~~iG~~~~~~~~~~~ 80 (403)
T TIGR00836 1 TAWLLIAAALVFFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGEDNPINGFIGTGGFGLKNFLY 80 (403)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhheehHHHHhCCCCCCCCCcCchHHhhccCCc
Confidence 479999999999999999999999999999999999999999999999999999999997 558899986665554321
Q ss_pred --------CCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccC
Q 044248 128 --------SNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFG 199 (489)
Q Consensus 128 --------~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~ 199 (489)
+.+++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+++|||+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwvW~~~GwL~---------~ 151 (403)
T TIGR00836 81 PGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLY---------K 151 (403)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccceeecCCchhh---------c
Confidence 12468899999999999999999999999999999999999999999999999999999997 5
Q ss_pred CceeeecCceEeehhhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhccccCCC
Q 044248 200 SGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGS 279 (489)
Q Consensus 200 lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~~~~ 279 (489)
+|++|||||++||++||++||+++++||||++|++ .++++||||++++++|+++||+||||||+||++.. +
T Consensus 152 lG~~DfAG~~vVH~~gG~~~L~~a~~LGpR~~r~~--~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~~~-------~ 222 (403)
T TIGR00836 152 LGVLDFAGGGVVHIVGGVAGLAAALVLGPRIGRFP--RPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAA-------N 222 (403)
T ss_pred cCcchhcCceeEecchhHHHHHHHHHhcCCCCCCc--CcCCCCCCCHHHHHHHHHHHHHHHhcccchhhccc-------c
Confidence 89999999999999999999999999999999986 23348999999999999999999999999998654 1
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCCCCcchhHHHHHHHhhHHHHHHHh
Q 044248 280 HYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACN 359 (489)
Q Consensus 280 ~~g~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~~~v~pw~AliiG~iag~v~~~~~ 359 (489)
..+.++++||++|+|+|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+...
T Consensus 223 -----~~~~~a~~nT~lA~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~ 297 (403)
T TIGR00836 223 -----GTAAYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAV 297 (403)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999999999999999999999999999999999999999996655
Q ss_pred -hhccccccccccCccccccchhhHHHHHHHHHhcCCC---CccccccCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 044248 360 -KLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNS---PYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILH 435 (489)
Q Consensus 360 -~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~---~~G~~~gg~~~~l~~Ql~g~~vi~~ws~~~~~i~~~il~ 435 (489)
++++|+|||||||++++||+||+||++++|+|++++. ..|.+++++++|++.|++|++++++|+++.++++++++|
T Consensus 298 ~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~g~~~~~~~~~l~~Ql~g~~~~~~~s~~~~~ii~~il~ 377 (403)
T TIGR00836 298 SKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTGGLLGGNGKQLGVQLIGIAAIIAWAFVVTFIILKILD 377 (403)
T ss_pred HHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhcccccccccCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999999999999999999999998632 235667778899999999999999999999999999999
Q ss_pred hcccCCCCHHHHhcCCcccccccccC
Q 044248 436 KLKLLRISPEDEMAGMDLTRHGGFAY 461 (489)
Q Consensus 436 ~~~~LRv~~e~E~~GlD~~~hg~~ay 461 (489)
|+.+||+++|||++|+|.+||||++|
T Consensus 378 ~~~~lRv~~e~E~~GlD~~~hg~~ay 403 (403)
T TIGR00836 378 KTIGLRVSEEEEKIGLDLAEHGEFAY 403 (403)
T ss_pred hcccccCCHHHHHhCCChhhhCcccC
Confidence 99999999999999999999999998
No 4
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=100.00 E-value=1.3e-104 Score=830.44 Aligned_cols=386 Identities=36% Similarity=0.621 Sum_probs=353.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC---Cccccccccccc
Q 044248 47 AVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPS---NGFIGRHNFALK 123 (489)
Q Consensus 47 ~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~---~g~iG~~~f~l~ 123 (489)
++|+.|+++|++|||+|||||+|+|+|++|+||++|+++||++|+++++++||++||+++||++. ++++|. |.+.
T Consensus 2 ~~d~~w~l~~~~LV~~M~~Gfalle~G~vr~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~lafg~~~~~~~g~~g~--f~~~ 79 (404)
T TIGR03644 2 ALDTFYFLISGALVMWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYPGGGIFLGGILGS--FLLG 79 (404)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCcchh--hhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999652 345542 2221
Q ss_pred cC--------C---CC-CchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccc
Q 044248 124 SF--------P---TS-NFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASAS 191 (489)
Q Consensus 124 ~~--------~---~~-~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~ 191 (489)
.. + +. .+++.+|+||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+|+ +|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ahW~W~-~GwL~-- 156 (404)
T TIGR03644 80 ADNPVGDLIAGFEGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWG-GGWLD-- 156 (404)
T ss_pred ccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhhhhheeC-chHHh--
Confidence 11 0 11 1356789999999999999999999999999999999999999999999999997 79997
Q ss_pred cCCCcccCCceeeecCceEeehhhHHHHHHHHHhhcCCCCCCCCCCCcc-cCCCchHHHHhhHHHHHHHhhhcCcccchh
Q 044248 192 NTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSV-LRGHSASLVVLGTFMLWFGWYGFNPGSFTK 270 (489)
Q Consensus 192 ~~~~~~~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~-~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~ 270 (489)
++|++|||||++||++||++||+++++||||++||+++++++ +||||++++++|+++||+||||||+||++.
T Consensus 157 -------~lG~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~~~lG~~iLw~gW~gFN~gs~l~ 229 (404)
T TIGR03644 157 -------DLGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQLA 229 (404)
T ss_pred -------hcCchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 589999999999999999999999999999999998877754 899999999999999999999999999887
Q ss_pred hhccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCCCCcchhHHHHHHHh
Q 044248 271 ILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFV 350 (489)
Q Consensus 271 ~~~~~~~~~~~g~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~~~v~pw~AliiG~i 350 (489)
.+. .++....+++++||++|+++|+++|++++++++||+|+..++||+|||||+|||+|++++||+|++||++
T Consensus 230 ~~~-------~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~i 302 (404)
T TIGR03644 230 LSD-------VADANAVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAV 302 (404)
T ss_pred ccc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHH
Confidence 631 1222356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhccccccccccCccccccchhhHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHhhhhhHH
Q 044248 351 AAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPL 430 (489)
Q Consensus 351 ag~v~~~~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~G~~~gg~~~~l~~Ql~g~~vi~~ws~~~~~i~ 430 (489)
+|++|+...++++|+|||||||++++||+||+||++++|+|+.+ +|++.|++|++++++|++..++++
T Consensus 303 ag~v~~~~~~~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~------------~~l~~Ql~g~~~~~~~~~~~s~~~ 370 (404)
T TIGR03644 303 GGVIVVFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPITNGD------------ASFGAQLIGAATIFAWVFVTSLIV 370 (404)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCchHhhhHHHHHHHHHHHHhccc------------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888889999999999999999999999999999632 589999999999999999999999
Q ss_pred HHHHHhcccCCCCHHHHhcCCcccccccccCCC
Q 044248 431 FFILHKLKLLRISPEDEMAGMDLTRHGGFAYVY 463 (489)
Q Consensus 431 ~~il~~~~~LRv~~e~E~~GlD~~~hg~~ay~~ 463 (489)
++++|++.+|||++|||++|+|.+||||++||.
T Consensus 371 ~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay~e 403 (404)
T TIGR03644 371 WFILKATMGIRVSEEEEYEGLDIAECGMEAYPE 403 (404)
T ss_pred HHHHHhcccccCCHHHHHcCCCHHHhCcccCCC
Confidence 999999999999999999999999999999974
No 5
>PRK10666 ammonium transporter; Provisional
Probab=100.00 E-value=9.8e-104 Score=827.67 Aligned_cols=391 Identities=29% Similarity=0.516 Sum_probs=354.6
Q ss_pred ccccchhHHHHHHHHHHHHHH-HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccc-ccc
Q 044248 44 TAYAVDSTYLLFSAYLVFSMQ-LGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRH-NFA 121 (489)
Q Consensus 44 ~~~~~d~~w~l~~~~lV~~M~-~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~-~f~ 121 (489)
..+..|+.|+++|++|||+|| |||+|+|+|+||+||++|+++||++|++++++.||++||+++||+ .++|+|+. +++
T Consensus 26 ~~~~~d~~w~l~~~~lV~~M~~~Gfalle~G~vR~KN~~n~~~k~~~~~~~~~l~w~~~Gy~lafg~-~~~~iG~~~~~~ 104 (428)
T PRK10666 26 VADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGE-GNAFFGNFNWLM 104 (428)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHeeeeeeHHHHhCC-CCCcccChHHhh
Confidence 356689999999999999998 999999999999999999999999999999999999999999996 47899974 444
Q ss_pred cccCCC-----CCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCc
Q 044248 122 LKSFPT-----SNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDL 196 (489)
Q Consensus 122 l~~~~~-----~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~ 196 (489)
+.+.+. +.+++.+|+||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+ +|||.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~~vahWvW~-~GwL~------- 176 (428)
T PRK10666 105 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWG-GGLLA------- 176 (428)
T ss_pred hcCCCcccccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHHHhhhheeC-chhHh-------
Confidence 443321 12457899999999999999999999999999999999999999999999999997 89997
Q ss_pred ccCCceeeecCceEeehhhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhcccc
Q 044248 197 LFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYN 276 (489)
Q Consensus 197 ~~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~ 276 (489)
++|++|||||++||++||++||+++++||||++|. +++++|||++++++|+++||+||||||+||++..
T Consensus 177 --~lG~~DfAG~~vVH~~gG~~aL~~a~~lG~R~g~~----~~~~~~hn~~~~~lGt~lLw~GW~gFN~Gs~~~~----- 245 (428)
T PRK10666 177 --SDGALDFAGGTVVHINAAVAGLVGAYLLGKRVGFG----KEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGAA----- 245 (428)
T ss_pred --hcchhhhcccchhHHhHHHHHHHHHHHhcccCCCC----CCCCCCCCHHHHHHHHHHHHHHHHhccchhhccc-----
Confidence 58999999999999999999999999999999852 2347999999999999999999999999998755
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCCCCcchhHHHHHHHhhHHHHH
Q 044248 277 TGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLI 356 (489)
Q Consensus 277 ~~~~~g~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~~~v~pw~AliiG~iag~v~~ 356 (489)
+ ..+.++++||++|+++|+++|++++++++||+|+.++|||+|||||+|||+|++++||+|++||+++|++|+
T Consensus 246 --~-----~~a~~a~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~ 318 (428)
T PRK10666 246 --N-----EIAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGL 318 (428)
T ss_pred --c-----chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHH
Confidence 2 357899999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HH-hhhccccccccccCccccccchhhHHHHHHHHHhcCCCCcccccc-C--chHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 044248 357 AC-NKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMG-G--GGKLLAAHVIQILVVAGWVSATMGPLFF 432 (489)
Q Consensus 357 ~~-~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~G~~~g-g--~~~~l~~Ql~g~~vi~~ws~~~~~i~~~ 432 (489)
.. +.+++|+|||||+|++++||+||+||.+++|+|+++.. .+..+. + .++|++.|++|++++++|+++.++++++
T Consensus 319 ~~~~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~~~~-~~~~~~~g~~~~~ql~~Ql~g~~~~~~~~~~~t~ii~~ 397 (428)
T PRK10666 319 WGVTMLKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAASSL-GGVGYAEGVTMGHQVLVQLESIAITIVWSGVVAFIGYK 397 (428)
T ss_pred HHHHHHHhcCCCCCCcCccHhhhHhHHHHHHHHHHhhchhc-cCccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 45666799999999999999999999999999997631 122222 2 2479999999999999999999999999
Q ss_pred HHHhcccCCCCHHHHhcCCcccccccccCC
Q 044248 433 ILHKLKLLRISPEDEMAGMDLTRHGGFAYV 462 (489)
Q Consensus 433 il~~~~~LRv~~e~E~~GlD~~~hg~~ay~ 462 (489)
++|++.+||+++|||+.|+|.+||||++|+
T Consensus 398 il~~~~~lRvs~e~E~~GlD~~~hg~~ay~ 427 (428)
T PRK10666 398 LADLTVGLRVPEEQEREGLDVNSHGENAYN 427 (428)
T ss_pred HHHhcccCcCCHHHHHhCCChhHhCccccC
Confidence 999999999999999999999999999996
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=100.00 E-value=1.7e-96 Score=773.05 Aligned_cols=390 Identities=44% Similarity=0.779 Sum_probs=336.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CCccccccccccccCCC-
Q 044248 51 TYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTP--SNGFIGRHNFALKSFPT- 127 (489)
Q Consensus 51 ~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~--~~g~iG~~~f~l~~~~~- 127 (489)
+|+++|+++|++||+||+++|+|.+|+||++|+++||++|++++++.||++||+++||++ .++++|+..+.....+.
T Consensus 1 ~w~l~~~~lv~~m~~G~~~l~~G~vr~kn~~~~~~~~~~~~~~~~~~~~~~Gf~lafg~~~~~~~~~g~~~~~~~~~~~~ 80 (399)
T PF00909_consen 1 AWLLLCAFLVFLMQPGFALLEAGLVRSKNAVNILYKNLIDVAVVVMIWFLFGFSLAFGKRYGFSGFIGNLGFSAFGFQWA 80 (399)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHCCS-GGGHHHHHHHHHHHHHHHHHHHHHCHHHHHHSTT-HHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhccHHHhhCCCcCchHHHHHHHHHHHHHHHHHHHHHhhhhheeecCCcccCceeeccccccccchhc
Confidence 599999999999999999999999999999999999999999999999999999999986 56788774333222211
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCcee-eec
Q 044248 128 SNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVI-DFA 206 (489)
Q Consensus 128 ~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~-Dfa 206 (489)
..++..+++||+.||+++++|++|+++||+|+.+|++|+++|+.++|||++||+|+++|||.+ +|++ ||+
T Consensus 81 ~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w~~~Gwl~~---------~g~~~Dfa 151 (399)
T PF00909_consen 81 NIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVWGENGWLAQ---------LGFLIDFA 151 (399)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHHCHCHHHHH---------CCHH--TT
T ss_pred cccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEEecchhhcc---------CccCCCCc
Confidence 123567899999999999999999999999999999999999999999999999999999984 7888 999
Q ss_pred CceEeehhhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhccccCCCCCCcchh
Q 044248 207 GSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSA 286 (489)
Q Consensus 207 Gs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~~~~~~g~~~~ 286 (489)
||++||++||++||++++++|||++|++ +.++++||||++++++|+++||+||+|||+||++..+. ..
T Consensus 152 G~~vVH~~gG~~gL~~a~~lg~R~~~~~-~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~-----------~~ 219 (399)
T PF00909_consen 152 GSGVVHLFGGVFGLAAAIVLGPRRGRFD-GKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANG-----------RA 219 (399)
T ss_dssp -TTTTHHHHHHHHHHHHHHH--CTTTTG-TTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSH-----------HH
T ss_pred cceeeehhhhHHHHhhheeeCCCCCccc-ccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCC-----------cc
Confidence 9999999999999999999999999997 33334899999999999999999999999999887721 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCCCCcchhHHHHHHHhhHHHHHHHh-hhcccc
Q 044248 287 IGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACN-KLAEKA 365 (489)
Q Consensus 287 ~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~~~v~pw~AliiG~iag~v~~~~~-~l~~kl 365 (489)
..|+++||++|+++|++++++++++.+||+|+.+++||+|||||+|||+|++++||+|+++|+++|.+++... ++++|+
T Consensus 220 ~~~~~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~ 299 (399)
T PF00909_consen 220 WLRAAVNTLLAAAAGGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRL 299 (399)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhHHHHHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheeccccee
Confidence 2259999999999999999999999999999999999999999999999999999999999999999986655 599999
Q ss_pred ccccccCccccccchhhHHHHHHHHHhcCC----CCccccccCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcccCC
Q 044248 366 KYDDPLEAAQLHGGCGAWGVIFTALLLRRN----SPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLR 441 (489)
Q Consensus 366 ~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~----~~~G~~~gg~~~~l~~Ql~g~~vi~~ws~~~~~i~~~il~~~~~LR 441 (489)
|||||||++++||+||+||++++|+|+.++ ...+.++.++.+|++.|++++++++.|+++.++++++++|++.+||
T Consensus 300 ~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~~~l~~Ql~g~~~~~~~~~~~s~i~~~~l~~~~~LR 379 (399)
T PF00909_consen 300 KIDDPVGAFAVHGVGGIWGTILTGLFASPEVNYSDGYGGLFYGNGRQLGIQLLGIVVILAWSFVVSYIIFKILKKFGGLR 379 (399)
T ss_dssp TS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHCSS-SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SB
T ss_pred EeccccceEeeeeccHHHHHHHHHHHhccccccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999999999873 2234344445599999999999999999999999999999999999
Q ss_pred CCHHHHhcCCcccccccccC
Q 044248 442 ISPEDEMAGMDLTRHGGFAY 461 (489)
Q Consensus 442 v~~e~E~~GlD~~~hg~~ay 461 (489)
|++|||++|+|.+||||++|
T Consensus 380 v~~~~E~~GlD~~~hg~~aY 399 (399)
T PF00909_consen 380 VSEEDERVGLDLSEHGEEAY 399 (399)
T ss_dssp --HHHHHH-HHHHHHS--SB
T ss_pred CCHHHHhhCCCHHHhCcCcC
Confidence 99999999999999999999
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=8.8e-36 Score=299.34 Aligned_cols=284 Identities=21% Similarity=0.228 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCceeeecCceEeeh
Q 044248 134 YFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHM 213 (489)
Q Consensus 134 ~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~DfaGs~vVH~ 213 (489)
+-+..+.||+.++.|..|++.+|.++.++++++++..++ +...-|-+-+ .+.+-|-.||..||.
T Consensus 118 e~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~~fEv~~-~~~~e~v~~n---------------~~~v~d~g~smtih~ 181 (442)
T KOG3796|consen 118 ESIILADFSAASVLISMGAVLGKVSPAQLLIMALFEVTA-FGINEMVISN---------------IFNVNDHGGSMTIHA 181 (442)
T ss_pred HHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHHHHHHHH-HHHHHHHHHH---------------hccccccCCceEEEe
Confidence 446678999999999999999999999999999987653 3333222211 368899999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhccccCCCCCCcchhhhhHHHH
Q 044248 214 VGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVT 293 (489)
Q Consensus 214 ~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~~~~~~g~~~~~~~~~~N 293 (489)
+|+++||++++++.|+..|- .++|+.-..||+.++++||++||+.|++||..-+ . ..+...|+++|
T Consensus 182 FgAYFGLavA~~l~k~~~~~-~~~~~gs~y~sdLfAMIGtlFLWmfWPSFNsal~--~-----------~~~~r~rAi~N 247 (442)
T KOG3796|consen 182 FGAYFGLAVAWCLYKPNLEG-TTENEGSAYHSDLFAMIGTLFLWMFWPSFNSALA--R-----------SGDARHRAIFN 247 (442)
T ss_pred hhhhhhhhHhhhccCccccc-cccccCceecchHHHHHHHHHHHHhccccchhhh--c-----------CchhhHHHHHH
Confidence 99999999999997766543 2333345789999999999999999999997643 2 11457899999
Q ss_pred HHHHHHHHHHHHHHHHHH--hhCCceeecccccceeceeeeccCCCC-cchhHHHHHHHhhHHHHHHHh-----hhcccc
Q 044248 294 TTLAGCTAALTTLFGKRI--LSGHWNVTDVCNGLLGGFAAITAGCSV-VEPWAAIVCGFVAAVVLIACN-----KLAEKA 365 (489)
Q Consensus 294 T~la~a~g~l~~~~~~~~--~~~k~~~~~~~nG~LaGLVaIta~~~~-v~pw~AliiG~iag~v~~~~~-----~l~~kl 365 (489)
|++|.|++.+|++.++.. .+||+|+++++|..|||.|||..+|+. .+||.|++||+|||++++..+ ++.+|+
T Consensus 248 Ty~slAa~tvTtf~~Sslv~~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~~~l 327 (442)
T KOG3796|consen 248 TYLSLAASTVTTFAVSSLVHPQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLERKL 327 (442)
T ss_pred HHHHHHHHHHHhhhhhhhhcccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhcccc
Confidence 999999999999999876 479999999999999999999999985 799999999999999985543 466899
Q ss_pred ccccccCccccccchhhHHHHHHHHHhcC---C-CCccc-----cccC-----chHHHHHHHHHHHHHHHHHhhhhhHHH
Q 044248 366 KYDDPLEAAQLHGGCGAWGVIFTALLLRR---N-SPYGL-----FMGG-----GGKLLAAHVIQILVVAGWVSATMGPLF 431 (489)
Q Consensus 366 ~IDD~~~a~~vHg~~Gi~G~l~~glfa~~---~-~~~G~-----~~gg-----~~~~l~~Ql~g~~vi~~ws~~~~~i~~ 431 (489)
||+|+|++.+.||.+|++|.++...++.- + ...++ +-++ ...|-..|+.|+.+++..+...+++..
T Consensus 328 ~i~dtcgv~nlhgmpg~l~~~~~i~~a~~~t~e~yg~~l~~ifp~~~gng~~~~~sQa~~Ql~gl~~~l~~A~~gGlLtG 407 (442)
T KOG3796|consen 328 GIHDTCGVHNLHGMPGLLGGIASIVFAVLATPESYGKGLYHIFPMIGGNGHGMATSQALYQLFGLLVTLVIALVGGLLTG 407 (442)
T ss_pred cccccccccccccchHHHHHHHHHHHHhhcchhhcccccccccceecCCCccchhHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999998888632 1 11111 1122 357899999999999999999999999
Q ss_pred HHHHhcccCCCCHHHHh
Q 044248 432 FILHKLKLLRISPEDEM 448 (489)
Q Consensus 432 ~il~~~~~LRv~~e~E~ 448 (489)
.+||. +.+|.++|+|-
T Consensus 408 llLkl-~~w~qp~d~~~ 423 (442)
T KOG3796|consen 408 LLLKL-KIWDQPSDDEY 423 (442)
T ss_pred heeec-cccCCCChhhh
Confidence 98885 67777777654
No 8
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=66.06 E-value=14 Score=38.34 Aligned_cols=117 Identities=9% Similarity=0.169 Sum_probs=71.1
Q ss_pred CcchhHHHHHHHhhHHHH-HHHhhhccccccccccCccccccch-hhHHHHHHHHHhcCCCC-----ccccccCchHHHH
Q 044248 338 VVEPWAAIVCGFVAAVVL-IACNKLAEKAKYDDPLEAAQLHGGC-GAWGVIFTALLLRRNSP-----YGLFMGGGGKLLA 410 (489)
Q Consensus 338 ~v~pw~AliiG~iag~v~-~~~~~l~~kl~IDD~~~a~~vHg~~-Gi~G~l~~glfa~~~~~-----~G~~~gg~~~~l~ 410 (489)
.-+||..+++|.+.|.++ +....+..|+|-|.-+.-.++|.++ |+-.-+.-.+|.+++.+ ...+ .+-..++
T Consensus 59 t~spw~gl~~a~l~g~l~~ll~a~~ti~l~~nqiisG~alnl~a~Glt~fl~~~~~~~~~~~~~~~~~p~l--~~ip~~g 136 (304)
T COG1079 59 TGSPWLGLLAAALVGALFGLLHAFLTIKLRANQIISGLALNLLASGLTAFLGQSIFGQPGTTFQPIDIPGL--SDIPVIG 136 (304)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccCCccc--ccCcccc
Confidence 568999999999999887 5555677899999999988888775 44444555566655321 0000 0001111
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhcc-cCCC------CHHHHhcCCccccc
Q 044248 411 AHVIQILVVAGWVSATMGPLFFILHKLK-LLRI------SPEDEMAGMDLTRH 456 (489)
Q Consensus 411 ~Ql~g~~vi~~ws~~~~~i~~~il~~~~-~LRv------~~e~E~~GlD~~~h 456 (489)
.-+...-....-++....+.+++++|++ +||+ ++..|..|.|+...
T Consensus 137 ~~~~~~~~~~y~ai~lv~~~~~~L~rTr~GL~lravGE~P~aad~~Gi~V~r~ 189 (304)
T COG1079 137 PALFGQSPLVYLAILLVALVWYVLYRTRFGLRLRAVGENPAAADAMGINVYRY 189 (304)
T ss_pred chhcccCHHHHHHHHHHHHHHHHHhccccceEEEEecCChhHHHhCCCChhhH
Confidence 1111111233334445567888999987 5655 35566788887543
No 9
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=63.13 E-value=54 Score=34.98 Aligned_cols=139 Identities=24% Similarity=0.246 Sum_probs=88.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH---HHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccccccccc
Q 044248 47 AVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMN---IMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALK 123 (489)
Q Consensus 47 ~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~---il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~~f~l~ 123 (489)
.-|..+..+.+.+.++--+|| .+|+....|... +++..++..+.+.+.|.++.|-.. |+
T Consensus 187 ~~s~~~~~lG~~lLw~gW~gF---N~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~-gk-------------- 248 (399)
T PF00909_consen 187 PHSPPLAMLGTLLLWFGWFGF---NAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLS-GK-------------- 248 (399)
T ss_dssp HCHHHHHHHHHHHHHHHHHHH---HHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-SS--------------
T ss_pred CCcHHHhhhhHHHHHHHhccc---ccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccc-cc--------------
Confidence 346678888888777666665 556655444433 678888999999999998876332 21
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCcee
Q 044248 124 SFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVI 203 (489)
Q Consensus 124 ~~~~~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~ 203 (489)
.+ ...+.+.+.|...+. .+-+.=.++..-++.+++ ++.++..... |+.+ ++++.
T Consensus 249 ------~~-~~~~~nG~laGlVai---ta~~~~v~p~~A~~iG~i-ag~i~~~~~~-------~l~~--------~~~iD 302 (399)
T PF00909_consen 249 ------WS-MVGICNGALAGLVAI---TAGAGYVTPWGALLIGAI-AGLISYFGVS-------WLLK--------RLKID 302 (399)
T ss_dssp ---------HHHHHHHHHHHHHHH---TTTTTTS-HHHHHHHHHH-HHHHHHHHHH-------HHHH--------HHTS-
T ss_pred ------cc-hhhhhhhhhhhhhhe---ecccCCCcHHHHHHhhhh-Hhhhhhhhee-------cccc--------eeEec
Confidence 01 122334444443332 333466778887787766 4445443332 4432 57899
Q ss_pred eecCceEeehhhHHHHHHHHHhhcCC
Q 044248 204 DFAGSGVVHMVGGIAGLWGAYIEGPR 229 (489)
Q Consensus 204 DfaGs~vVH~~gG~~aLv~a~~lGpR 229 (489)
|--+.-.||.++|+.|...+-++-.+
T Consensus 303 D~~~~~~vHg~~Gi~G~i~~glfa~~ 328 (399)
T PF00909_consen 303 DPVGAFAVHGVGGIWGTILTGLFASP 328 (399)
T ss_dssp HTTGHHHHCHHHHHHHHHHHHHHCCC
T ss_pred cccceEeeeeccHHHHHHHHHHHhcc
Confidence 99999999999999999998777544
No 10
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=62.80 E-value=22 Score=33.80 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=45.8
Q ss_pred HHHHHHHhhHHHHHHHhhhccccccccccCccccccchhhHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHH
Q 044248 343 AAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVVAGW 422 (489)
Q Consensus 343 ~AliiG~iag~v~~~~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~G~~~gg~~~~l~~Ql~g~~vi~~w 422 (489)
-++.+|+.+|++--....+.+-++.-.. .| +.++-+++..+ -.+...-|++|++++.+.
T Consensus 22 ~~~~iGf~gGliWs~v~yl~y~f~FT~v---~P--------~~ll~Pf~~g~----------wk~t~~G~~igi~~~gv~ 80 (173)
T PF11085_consen 22 KVLEIGFFGGLIWSLVRYLAYFFHFTEV---GP--------NFLLEPFALGD----------WKNTWLGNLIGIVFIGVF 80 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc---cc--------Chhhhhhhccc----------hhhhhHHHHHHHHHHHHH
Confidence 3567888888876443334333333211 00 23333333221 123445699999999999
Q ss_pred HhhhhhHHHHHHHhcc
Q 044248 423 VSATMGPLFFILHKLK 438 (489)
Q Consensus 423 s~~~~~i~~~il~~~~ 438 (489)
|.+.+++...++||+.
T Consensus 81 Si~aAllY~~~l~k~~ 96 (173)
T PF11085_consen 81 SIVAALLYYALLKKFK 96 (173)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999875
No 11
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=44.78 E-value=17 Score=35.38 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=49.1
Q ss_pred CceeecccccceeceeeeccCCCC---------cchhHHHHHHHhhHHHHHH----HhhhccccccccccCcccccc
Q 044248 315 HWNVTDVCNGLLGGFAAITAGCSV---------VEPWAAIVCGFVAAVVLIA----CNKLAEKAKYDDPLEAAQLHG 378 (489)
Q Consensus 315 k~~~~~~~nG~LaGLVaIta~~~~---------v~pw~AliiG~iag~v~~~----~~~l~~kl~IDD~~~a~~vHg 378 (489)
++++.-...|.++|.++....+-. .++|.+++++++++++... .+.++++.+|.|--+.+|=||
T Consensus 160 ~~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~~iKD~g~lipghG 236 (259)
T PF01148_consen 160 KISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGDLFESAIKRDAGIKDSGNLIPGHG 236 (259)
T ss_pred CCCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCcC
Confidence 466777888998888776544321 5678999999998887633 356778899999999999887
No 12
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=40.61 E-value=1.3e+02 Score=27.21 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=54.7
Q ss_pred hhHHHHHHHhhHHHHHH-HhhhccccccccccCccccccchhhHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHH
Q 044248 341 PWAAIVCGFVAAVVLIA-CNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVV 419 (489)
Q Consensus 341 pw~AliiG~iag~v~~~-~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~G~~~gg~~~~l~~Ql~g~~vi 419 (489)
|+.|-.+-+..|.+... ...+.++.+.+..-++=..+-.+|+.|.+.+..-. ...+-+|....
T Consensus 30 ~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~----------------~~vp~lG~~~~ 93 (138)
T PF04657_consen 30 PLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNI----------------ILVPRLGAALT 93 (138)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHH----------------HHhhhhhHHHH
Confidence 77777776666665522 22233333444444566677888999888766432 23466777777
Q ss_pred HHHHhhhhhHHHHHHHhcccCCC
Q 044248 420 AGWVSATMGPLFFILHKLKLLRI 442 (489)
Q Consensus 420 ~~ws~~~~~i~~~il~~~~~LRv 442 (489)
.......=.+...++|.++.+..
T Consensus 94 ~~l~~~GQl~~sl~iD~fG~fg~ 116 (138)
T PF04657_consen 94 TILIVAGQLIASLLIDHFGLFGA 116 (138)
T ss_pred HHHHHHHHHHHHHHHHHccccCC
Confidence 77777777777888888765433
No 13
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=40.19 E-value=2.6e+02 Score=30.20 Aligned_cols=138 Identities=20% Similarity=0.194 Sum_probs=82.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcccc--hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccccccccccC
Q 044248 48 VDSTYLLFSAYLVFSMQLGFAMLCAGSVR--AKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSF 125 (489)
Q Consensus 48 ~d~~w~l~~~~lV~~M~~Gfalle~G~vr--~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~~f~l~~~ 125 (489)
-|..+.++.+.+.++--+|| .+|+.- ...+..+++...+..+.+.+.|.++-|-. .++.+
T Consensus 194 ~n~~~~~lGt~lLw~gW~gF---N~Gs~~~~~~~~~~a~~nT~lA~a~g~l~~~~~~~~~-~gk~~-------------- 255 (403)
T TIGR00836 194 HNVPLVVLGTFILWFGWFGF---NAGSALAANGTAAYAAVNTNLAAAAGGLTWLLIDWLK-HGKPT-------------- 255 (403)
T ss_pred CCHHHHHHHHHHHHHHHhcc---cchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--------------
Confidence 46778888888777765555 455542 23566788888899999999999987632 22110
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCceeee
Q 044248 126 PTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDF 205 (489)
Q Consensus 126 ~~~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~Df 205 (489)
. ..+.+... +-.....+-++=.++..-++.+++ +++++....++ +.+ ++++.|-
T Consensus 256 ------~-~~~~nG~L---AGLVaita~a~~v~p~~A~viG~i-ag~~~~~~~~~-------l~~--------~~~iDD~ 309 (403)
T TIGR00836 256 ------L-LGACNGIL---AGLVAITPGCGVVTPWGAIIIGLV-AGVLCYLAVSK-------LKK--------KLKIDDP 309 (403)
T ss_pred ------H-HHHHhhhh---hhheeecCCCCCCCHHHHHHHHHH-HHHHHHHHHHH-------HHH--------HcCCCCC
Confidence 0 00111111 111111222244556665666655 33343322211 111 4788999
Q ss_pred cCceEeehhhHHHHHHHHHhhcCC
Q 044248 206 AGSGVVHMVGGIAGLWGAYIEGPR 229 (489)
Q Consensus 206 aGs~vVH~~gG~~aLv~a~~lGpR 229 (489)
-+.-.||..+|+.|....-++.+.
T Consensus 310 ~~~~~vHg~~Gi~G~i~~glfa~~ 333 (403)
T TIGR00836 310 LDAFAVHGVGGIWGLIATGLFAAP 333 (403)
T ss_pred cccchhhhhhHHHHHHHHHHhccc
Confidence 999999999999999988777643
No 14
>PLN02594 phosphatidate cytidylyltransferase
Probab=39.25 E-value=14 Score=38.76 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=32.4
Q ss_pred hhHHHHHHHhhHHHHH----HHhhhccccccccccCcccccc
Q 044248 341 PWAAIVCGFVAAVVLI----ACNKLAEKAKYDDPLEAAQLHG 378 (489)
Q Consensus 341 pw~AliiG~iag~v~~----~~~~l~~kl~IDD~~~a~~vHg 378 (489)
.+.++++|++++++.. +.+.+++.+||.|--+.+|=||
T Consensus 235 ~~h~l~l~l~aSl~a~fGdlfaS~~KR~~~IKDfG~~IPGHG 276 (342)
T PLN02594 235 QWHALSLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 276 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHccCCCcccCccCCCc
Confidence 5789999999998873 3567788899999999999998
No 15
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=36.72 E-value=3.1e+02 Score=29.57 Aligned_cols=138 Identities=20% Similarity=0.168 Sum_probs=84.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH---hcccch-hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccccccccc
Q 044248 48 VDSTYLLFSAYLVFSMQLGFAMLC---AGSVRA-KNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALK 123 (489)
Q Consensus 48 ~d~~w~l~~~~lV~~M~~Gfalle---~G~vr~-kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~~f~l~ 123 (489)
-|..+..+.+.+.++--+||=-=. ....++ +.+..+.+...+..+.+.+.|.++-|-. +++.
T Consensus 203 ~n~~~~~lG~~iLw~gW~gFN~gs~l~~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~-~gk~------------- 268 (404)
T TIGR03644 203 SNLPLATLGTFILWMGWFGFNGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLL-FGKA------------- 268 (404)
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC-------------
Confidence 466788888888888777764221 111222 3356778888888999999999987633 2321
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCcee
Q 044248 124 SFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVI 203 (489)
Q Consensus 124 ~~~~~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~ 203 (489)
+ ...+.+...|-..+ |. +-+.=.++..-++.+++ +++++..... ++. ++++.
T Consensus 269 -------~-~~~~~nG~LAGLVa-IT--a~~~~v~p~~A~iiG~i-ag~v~~~~~~-------~~~---------~~~iD 320 (404)
T TIGR03644 269 -------D-LTMVLNGALAGLVA-IT--AEPLTPSPLAATLIGAV-GGVIVVFSIV-------LLD---------KLKID 320 (404)
T ss_pred -------C-HHHHHHHHHhhhhh-hc--cccCCCCHHHHHHHHHH-HHHHHHHHHH-------HHH---------hCCCC
Confidence 0 11122222222221 12 22355667777777765 4555543322 232 47889
Q ss_pred eecCceEeehhhHHHHHHHHHhhc
Q 044248 204 DFAGSGVVHMVGGIAGLWGAYIEG 227 (489)
Q Consensus 204 DfaGs~vVH~~gG~~aLv~a~~lG 227 (489)
|--+.-.||..+|..|...+-+..
T Consensus 321 D~~~~~~vHg~~Gi~G~i~~glf~ 344 (404)
T TIGR03644 321 DPVGAISVHGVAGIWGTLVVPITN 344 (404)
T ss_pred CCcCchHhhhHHHHHHHHHHHHhc
Confidence 999999999999999998877663
No 16
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=35.22 E-value=13 Score=38.09 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=46.6
Q ss_pred CCceeecccccceeceeeeccCCCC--------cchhHHHHHHHhhHHHHHH----HhhhccccccccccCcccccc
Q 044248 314 GHWNVTDVCNGLLGGFAAITAGCSV--------VEPWAAIVCGFVAAVVLIA----CNKLAEKAKYDDPLEAAQLHG 378 (489)
Q Consensus 314 ~k~~~~~~~nG~LaGLVaIta~~~~--------v~pw~AliiG~iag~v~~~----~~~l~~kl~IDD~~~a~~vHg 378 (489)
.|.||.-.-.|.++|++..+..+.. .+++..+++|++.++.... -+.++++.++.|--..+|=||
T Consensus 182 P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GDL~ES~lKR~~gVKDSG~llPGHG 258 (285)
T PRK11624 182 PKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHG 258 (285)
T ss_pred CcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCCCcCcCCCcC
Confidence 3667888888888887665433221 2566777788877766533 356788899999999999997
No 17
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=33.33 E-value=17 Score=36.87 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=41.7
Q ss_pred hCCceeeccccc--ceeceeeeccCCCCcchhHHHHHHHhhHHHH-HHHhhhcccccccc
Q 044248 313 SGHWNVTDVCNG--LLGGFAAITAGCSVVEPWAAIVCGFVAAVVL-IACNKLAEKAKYDD 369 (489)
Q Consensus 313 ~~k~~~~~~~nG--~LaGLVaIta~~~~v~pw~AliiG~iag~v~-~~~~~l~~kl~IDD 369 (489)
-+-+|+ ...| .+.|-|+.|.-..=++||.|.++++++|.+. .....+-.|.||+|
T Consensus 30 LnFPDL--TvdGsfpLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k~kI~~ 87 (293)
T COG4120 30 LNFPDL--TVDGSFPLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVKFKILT 87 (293)
T ss_pred ccCCCc--cccCcccchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 345555 3344 3677777777777899999999999999887 55556777899987
No 18
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=31.98 E-value=79 Score=29.04 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=17.4
Q ss_pred eecCceEeehhhHHHHHHHHHh
Q 044248 204 DFAGSGVVHMVGGIAGLWGAYI 225 (489)
Q Consensus 204 DfaGs~vVH~~gG~~aLv~a~~ 225 (489)
|-+|....-+++|.+.+++...
T Consensus 34 E~~Gt~aL~ls~~l~~mig~yl 55 (137)
T PF12270_consen 34 EWVGTVALVLSGGLALMIGFYL 55 (137)
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877554
No 19
>PRK10666 ammonium transporter; Provisional
Probab=30.46 E-value=7e+02 Score=27.16 Aligned_cols=136 Identities=20% Similarity=0.079 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccccccccccCC
Q 044248 49 DSTYLLFSAYLVFSMQLGFAMLCAGSVRA--KNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFP 126 (489)
Q Consensus 49 d~~w~l~~~~lV~~M~~Gfalle~G~vr~--kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~~f~l~~~~ 126 (489)
|..+.++.+.+.++--+| |.+|+... +.+..+.+..++..+.+.+.|.++-|- -.++.
T Consensus 219 n~~~~~lGt~lLw~GW~g---FN~Gs~~~~~~~a~~a~~nT~la~a~g~l~~~~~~~~-~~gk~---------------- 278 (428)
T PRK10666 219 NLPMVFTGTAILYIGWFG---FNAGSAGAANEIAALAFVNTVVATAAAILGWVFGEWA-LRGKP---------------- 278 (428)
T ss_pred CHHHHHHHHHHHHHHHHh---ccchhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCC----------------
Confidence 455666777666664444 56666643 345667778888888889999887652 22210
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCceeeec
Q 044248 127 TSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFA 206 (489)
Q Consensus 127 ~~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~Dfa 206 (489)
+. ..+.....|.. ++| .+-+.=.++..-++.+++ +++++....++ +.+ ++++.|--
T Consensus 279 ----~~-~~~~nG~LaGL-VaI--Ta~a~~v~p~~A~iiG~v-ag~v~~~~~~~-------l~~--------~~~iDD~~ 334 (428)
T PRK10666 279 ----SL-LGACSGAIAGL-VGV--TPACGYVGVGGALIIGVV-AGLAGLWGVTM-------LKR--------WLRVDDPC 334 (428)
T ss_pred ----CH-HHHHHHHhhhh-hhc--ccccccCCHHHHHHHHHH-HHHHHHHHHHH-------HHh--------cCCCCCCc
Confidence 00 00111111110 111 222345566666666655 44444322211 221 36889999
Q ss_pred CceEeehhhHHHHHHHHHhhcC
Q 044248 207 GSGVVHMVGGIAGLWGAYIEGP 228 (489)
Q Consensus 207 Gs~vVH~~gG~~aLv~a~~lGp 228 (489)
+.-.||..+|+.|....-+...
T Consensus 335 ~a~~vHgv~Gi~G~l~~glfa~ 356 (428)
T PRK10666 335 DVFGVHGVCGIVGCILTGIFAA 356 (428)
T ss_pred CccHhhhHhHHHHHHHHHHhhc
Confidence 9999999999999988877753
No 20
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=29.31 E-value=1.9e+02 Score=30.76 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=44.4
Q ss_pred cccccccCccccccchhhHHHHHHHHHhcCCC-CccccccCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 044248 365 AKYDDPLEAAQLHGGCGAWGVIFTALLLRRNS-PYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHK 436 (489)
Q Consensus 365 l~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~-~~G~~~gg~~~~l~~Ql~g~~vi~~ws~~~~~i~~~il~~ 436 (489)
+.+.||..+++..-++|.+|....++|..... +.+-++. .- ...+.+..++.+.-++++++++..++|+
T Consensus 267 Fgv~~p~r~i~a~~iGsaVgGal~~~~gv~~~ap~gGi~~--ip-~~~~~l~~iiailig~vvtavl~~~~k~ 336 (359)
T PRK10478 267 FAAADPLRVIPSIMVGSVCGAVTAALFGAQCYAGWGGLIV--LP-VVDGKLGYIAAVAVGAVVTAVCVNVLKS 336 (359)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHhCCccccccchHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34568889999999999999999999987521 1111111 01 1124455555566666777777777775
No 21
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=28.88 E-value=8.5e+02 Score=27.13 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCCC-Cc----------chhHHHHHHHhhHHHHH
Q 044248 288 GRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCS-VV----------EPWAAIVCGFVAAVVLI 356 (489)
Q Consensus 288 ~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~~-~v----------~pw~AliiG~iag~v~~ 356 (489)
....+=+..|+..|+-+|+++.-..+--.+-.+..-|.=.|.-...-+.. .+ .-...++-|+++++++.
T Consensus 102 ~~~lmlgqva~L~G~a~W~l~At~~~~PvSttHsiVgatigfs~~~~g~~Gi~w~~v~~iv~swfiSpilsg~~s~ilf~ 181 (512)
T KOG2493|consen 102 PKTLMLGQVAALFGSAAWLLVATFLKLPVSTTHSIVGATIGFSLVARGFNGIVWMEVIKIVASWFISPILSGIISAILFF 181 (512)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCccceeeeeeheeeeeeeeccccceeehhhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34567788888999999998876654444444433333222222222211 11 22234555677777765
Q ss_pred HHh
Q 044248 357 ACN 359 (489)
Q Consensus 357 ~~~ 359 (489)
...
T Consensus 182 ~v~ 184 (512)
T KOG2493|consen 182 LVD 184 (512)
T ss_pred HHH
Confidence 543
No 22
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=27.15 E-value=3.4e+02 Score=25.81 Aligned_cols=62 Identities=10% Similarity=0.263 Sum_probs=30.4
Q ss_pred hhcccccccchh-HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 044248 39 NKFSDTAYAVDS-TYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLF 101 (489)
Q Consensus 39 ~~~~~~~~~~d~-~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lv 101 (489)
+.+++...++.. .|.++ .++..+...+|.+--.+....++..+....-++.+.++...|.++
T Consensus 126 ~Rl~~~~~~lp~~~w~vl-~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~l~a~~i~~~l~li~ 188 (209)
T PF14023_consen 126 TRLSQAQSSLPPPLWIVL-LILAALLLIGFLLASALFLGPNRRAHLIAIALFAASIALALFLIL 188 (209)
T ss_pred HHHHHhhcCCChhHHHHH-HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666665 45532 222222334442211223334444555555666677777777765
No 23
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=25.79 E-value=44 Score=33.62 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=54.6
Q ss_pred HHHHHHHHHhh-----CCceeecccccceeceeeeccCCCC---------cchhHHHHHHHhhHHHHHHH----hhhccc
Q 044248 303 LTTLFGKRILS-----GHWNVTDVCNGLLGGFAAITAGCSV---------VEPWAAIVCGFVAAVVLIAC----NKLAEK 364 (489)
Q Consensus 303 l~~~~~~~~~~-----~k~~~~~~~nG~LaGLVaIta~~~~---------v~pw~AliiG~iag~v~~~~----~~l~~k 364 (489)
+.+.+..+... ++.||.-...|.+.|.+..+..+.. .++|..++++++.+++.... +.++++
T Consensus 148 i~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~lGDL~eS~iKR~ 227 (265)
T COG0575 148 IGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGDLFESYIKRL 227 (265)
T ss_pred hhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHc
Confidence 45555555432 3578888999999987766554432 23577888888888876432 367788
Q ss_pred cccccccCcccccc
Q 044248 365 AKYDDPLEAAQLHG 378 (489)
Q Consensus 365 l~IDD~~~a~~vHg 378 (489)
+++.|--..+|=||
T Consensus 228 ~gvKDsg~liPGHG 241 (265)
T COG0575 228 LGIKDSGWLIPGHG 241 (265)
T ss_pred cCCCCcCCCCCCcC
Confidence 99999999999997
No 24
>PF02653 BPD_transp_2: Branched-chain amino acid transport system / permease component; InterPro: IPR001851 This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as Escherichia coli LivH P08340 from SWISSPROT and LivM P22729 from SWISSPROT both of which are form the LIV-I transport system []. Also found with in this family are proteins from the galactose transport system permease [] and a ribose transport system []. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=25.70 E-value=55 Score=32.30 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=39.1
Q ss_pred hhCCceeecccccceeceeeeccCCCC-cchhHHHHHHHhhHHHH-HHHhhhccccccccc
Q 044248 312 LSGHWNVTDVCNGLLGGFAAITAGCSV-VEPWAAIVCGFVAAVVL-IACNKLAEKAKYDDP 370 (489)
Q Consensus 312 ~~~k~~~~~~~nG~LaGLVaIta~~~~-v~pw~AliiG~iag~v~-~~~~~l~~kl~IDD~ 370 (489)
..|.+|+.+-..-.+++.++....... .++|.+++++++.+.++ ....++..|+|.|..
T Consensus 24 ~~g~~nl~~~~~~~lga~~~~~~~~~~~~~~~l~~~~a~~~g~~~g~~~~~l~~r~~~~~~ 84 (267)
T PF02653_consen 24 ITGVINLGHGGFAGLGAYAAALLSSAFGPPWWLALPLAILVGALIGLLLGLLVARLRGDYF 84 (267)
T ss_pred HHCCccchhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhccceeeccccchh
Confidence 457777765554445554444333333 33888999998888877 556677889998776
No 25
>PRK10457 hypothetical protein; Provisional
Probab=25.36 E-value=62 Score=27.03 Aligned_cols=70 Identities=16% Similarity=0.058 Sum_probs=39.4
Q ss_pred hHHHHHHHhhHHHHHHHhhhccccccccccCccccccchhhHHHHHHHHHhcC-CCCccccccCchHHHHHHHHHHHHHH
Q 044248 342 WAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRR-NSPYGLFMGGGGKLLAAHVIQILVVA 420 (489)
Q Consensus 342 w~AliiG~iag~v~~~~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~-~~~~G~~~gg~~~~l~~Ql~g~~vi~ 420 (489)
...+++|+++|.+- +++. +=+||.+. -..-+-|+.|.+..++..+. +.. . ..+.+...+..+++|.++.+
T Consensus 4 i~~iiiG~iaG~lA---~~i~---pg~~~~G~-~~tiilGiiGA~iGg~l~~~~g~~-~-~~g~~~~~~i~aviGAiill 74 (82)
T PRK10457 4 LSWIIFGLIAGILA---KWIM---PGKDGGGF-FMTIILGIVGAVVGGWISTFFGFG-K-VDGFNFGSFVVAVIGAIVVL 74 (82)
T ss_pred HHHHHHHHHHHHHH---HHhc---CCCCCcCH-HHHHHHHHHHHHHHHHHHHHhCcc-c-cccccHHHHHHHHHHHHHHH
Confidence 45678888888663 2222 22455543 34567788888887776432 110 0 11122346778888877665
No 26
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.32 E-value=98 Score=29.84 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=55.6
Q ss_pred chHHHHhhHHHHHHHhhhcCcccchhhhccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH-HHhh-----CCcee
Q 044248 245 SASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGK-RILS-----GHWNV 318 (489)
Q Consensus 245 s~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~~~~~~g~~~~~~~~~~NT~la~a~g~l~~~~~~-~~~~-----~k~~~ 318 (489)
+.....+-..+++++.+.+-.|-..-.+. ++ ....-.+++.+.+..+++.-.++. ++.. +|...
T Consensus 77 ~~~~~~ld~~L~~~~if~~~~gi~~~f~~-----~~-----~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~ 146 (206)
T PF06570_consen 77 NPWLMALDNSLLFFGIFSLLFGIMGFFSP-----KN-----SNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSW 146 (206)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cc-----cccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHH
Confidence 45667777777888877777664433311 00 011134555555555555444444 3332 22221
Q ss_pred ec-cccc-----ceece---eeeccC--CCCcchhHHHHHHHhhHHHHHHHhhhcccccccc
Q 044248 319 TD-VCNG-----LLGGF---AAITAG--CSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDD 369 (489)
Q Consensus 319 ~~-~~nG-----~LaGL---VaIta~--~~~v~pw~AliiG~iag~v~~~~~~l~~kl~IDD 369 (489)
.. +.-+ ...++ .+.-|. ...++||.-++||+++-.+.+ ++++|++|-+
T Consensus 147 ~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~---~lkkk~~i~~ 205 (206)
T PF06570_consen 147 WKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRF---YLKKKYNITG 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHH---HHHHHhCCCC
Confidence 11 1101 11111 111122 235789999998877766653 3566777753
No 27
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=21.88 E-value=1.8e+02 Score=31.24 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCceeeccc--ccceeceeeeccCC-------CCcchhHHHHHHHhhHHHH-HHH
Q 044248 289 RTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVC--NGLLGGFAAITAGC-------SVVEPWAAIVCGFVAAVVL-IAC 358 (489)
Q Consensus 289 ~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~--nG~LaGLVaIta~~-------~~v~pw~AliiG~iag~v~-~~~ 358 (489)
.++.+|+++..+|-.+=++...+...|++..-+. -=.++|.|.+|-+- .-..|.-.-+.+..+++.| ++.
T Consensus 184 sVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~sA~~YavY~ 263 (416)
T KOG2765|consen 184 SVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALLSALLYAVYT 263 (416)
T ss_pred hhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHHHHHHHHHHHH
Confidence 3567888887766555444433345566644321 12367888887661 2345666677888888887 444
Q ss_pred hhhccccccc-cccCccccccchhhHHHH
Q 044248 359 NKLAEKAKYD-DPLEAAQLHGGCGAWGVI 386 (489)
Q Consensus 359 ~~l~~kl~ID-D~~~a~~vHg~~Gi~G~l 386 (489)
..+++|..=| +-+|.=-..|.-|++-.+
T Consensus 264 vllk~~~~~eg~rvdi~lffGfvGLfnll 292 (416)
T KOG2765|consen 264 VLLKRKIGDEGERVDIQLFFGFVGLFNLL 292 (416)
T ss_pred HHHHhhcccccccccHHHHHHHHHHHHHH
Confidence 4444443333 245554455555544433
No 28
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=21.24 E-value=3.9e+02 Score=27.49 Aligned_cols=127 Identities=22% Similarity=0.216 Sum_probs=69.4
Q ss_pred HHHHHHHHhhc--CCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhccccCCCCCCcchhhhhHHHHH
Q 044248 217 IAGLWGAYIEG--PRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTT 294 (489)
Q Consensus 217 ~~aLv~a~~lG--pR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~~~~~~g~~~~~~~~~~NT 294 (489)
..+|.++..+. ||..||. -|+-+.. .+.++.=|++|+-.+-|.|-..-..-. + .|.-..-..++.-|
T Consensus 63 llsL~vsrli~~~p~~~RF~-~GfwhlE--plvL~ing~ll~ll~lyAlinAl~~l~-d-------GGR~v~~~~ai~yt 131 (314)
T COG3965 63 LLSLLVSRLIAKDPRDARFP-YGFWHLE--PLVLAINGTLLALLCLYALINALGSLL-D-------GGREVEPGHAIAYT 131 (314)
T ss_pred HHHHHHHHHhccCCCccccC-cchhhhh--hhHhhhccHHHHHHHHHHHHHHHHHHh-c-------CCccccccHHHHHH
Confidence 34566666666 6666663 2332221 246677789988888888754321111 1 12212335566777
Q ss_pred HHHHHHHHHHHHHHHHHhhCCceee-c------ccccceeceeeeccCCCCcchhHHHHHHHhhHHHHHHHhhhcccccc
Q 044248 295 TLAGCTAALTTLFGKRILSGHWNVT-D------VCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKY 367 (489)
Q Consensus 295 ~la~a~g~l~~~~~~~~~~~k~~~~-~------~~nG~LaGLVaIta~~~~v~pw~AliiG~iag~v~~~~~~l~~kl~I 367 (489)
.++..+++..++...+..++..|.. . .+++.|+ .|+.+|++++...-.. ++..-.-.
T Consensus 132 ~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS---------------~al~VaF~~a~~l~~T-~~a~l~~Y 195 (314)
T COG3965 132 LVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLS---------------AALFVAFAAAWLLAGT-KFAHLVVY 195 (314)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHH---------------HHHHHHHHHHHHhccC-chhhhhcc
Confidence 7777777788888877644332221 1 2333333 6788888888654222 22222345
Q ss_pred ccc
Q 044248 368 DDP 370 (489)
Q Consensus 368 DD~ 370 (489)
-||
T Consensus 196 ~DP 198 (314)
T COG3965 196 ADP 198 (314)
T ss_pred cCH
Confidence 566
No 29
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=20.78 E-value=2.7e+02 Score=31.40 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHHHhhHHHHHHHhh--hcCcccchhhhccccCCCCCCcchhhhhHHHHHH-HHHHHHHHHHHHHHHHhhCCceeeccc
Q 044248 246 ASLVVLGTFMLWFGWY--GFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTT-LAGCTAALTTLFGKRILSGHWNVTDVC 322 (489)
Q Consensus 246 ~~l~~lGt~lLw~GW~--gFN~gs~~~~~~~~~~~~~~g~~~~~~~~~~NT~-la~a~g~l~~~~~~~~~~~k~~~~~~~ 322 (489)
+|+++.|.+++-++.. .-+..+.... ...++++ =..+.+-..-++..|+-..--|=-.+.
T Consensus 238 lP~vv~gGil~ai~~~~g~~~~~~~~~~-----------------~~~~~~~gg~~~~~lmvpvla~yia~sia~rpgla 300 (563)
T PRK10712 238 LPMVVAGGLCIALSFAFGIEAFKEPGTL-----------------AAALMQIGGGSAFALMVPVLAGYIAFSIADRPGLT 300 (563)
T ss_pred HHHHHHhHHHHHHHHHhCccccCCccHH-----------------HHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCccch
Q ss_pred ccceeceeeeccCCCCcchhHHHHHHHhhHHHHHHHhhhccccccccccCccccccchhhHHHHHHHHH
Q 044248 323 NGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALL 391 (489)
Q Consensus 323 nG~LaGLVaIta~~~~v~pw~AliiG~iag~v~~~~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glf 391 (489)
-|.+.|+++...+++++ ++++.|+++| +..++++++.|+-+.++.+--..+-=+++++.++++
T Consensus 301 pg~i~g~~a~~~~~GFl---G~Ilag~lag---yv~~~l~K~~~lP~~l~~l~piliiPllt~li~~~l 363 (563)
T PRK10712 301 PGLIGGMLAVSTGSGFI---GGIIAGFLAG---YVAKLISTKLKLPQSMEALKPILIIPLISSLVVGLA 363 (563)
T ss_pred HHHHHHHHHhcCCchHH---HHHHHHHHHH---HHHHHHHHhccCcHHHHhcCceeehhHHHHHHHHHH
No 30
>PF14074 DUF4257: Protein of unknown function (DUF4257)
Probab=20.27 E-value=20 Score=29.99 Aligned_cols=58 Identities=19% Similarity=0.258 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCcee-------------ecccccceeceeeeccCCCCcchhHHHHHHHhhHH
Q 044248 296 LAGCTAALTTLFGKRILSGHWNV-------------TDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAV 353 (489)
Q Consensus 296 la~a~g~l~~~~~~~~~~~k~~~-------------~~~~nG~LaGLVaIta~~~~v~pw~AliiG~iag~ 353 (489)
+|...|+++.++-++..+||... ..+.-|.+|++.++|...|.-+-+.-+.+.++||.
T Consensus 4 iA~liGgi~G~i~H~~~~g~i~~Pr~~k~~~~lGF~~d~~vG~~AaiL~v~~~~~~~~~~~iv~vSilaG~ 74 (82)
T PF14074_consen 4 IAGLIGGIMGLIGHYRKNGVIKKPRRTKQFFYLGFLEDMFVGSLAAILAVTVSSDPESLRVIVKVSILAGI 74 (82)
T ss_pred EeeeHhhHHHHHHHHhcCCEEecCccccceEEecHHHHHHHHHHHHHHhheeccCchhhhhhhhhhhhhhc
Confidence 46677888888888544443331 13556667777777777666666666666666653
Done!