Query 044248
Match_columns 489
No_of_seqs 150 out of 1358
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:37:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 100.0 3E-109 1E-113 861.7 27.1 391 46-466 2-395 (399)
2 1u7g_A Probable ammonium trans 100.0 8E-100 3E-104 788.5 26.7 368 45-442 5-385 (385)
3 3b9w_A Ammonium transporter fa 100.0 3.8E-80 1.3E-84 643.7 21.1 337 64-464 28-378 (407)
4 3hd6_A Ammonium transporter RH 100.0 4.9E-71 1.7E-75 584.9 24.2 367 51-466 64-453 (490)
5 3b9w_A Ammonium transporter fa 62.1 40 0.0014 34.9 10.4 141 48-227 175-315 (407)
6 3hd6_A Ammonium transporter RH 34.8 1.2E+02 0.004 32.2 8.8 141 48-227 221-364 (490)
7 2b2h_A AMT-1, ammonium transpo 24.9 4.2E+02 0.014 27.1 10.8 135 47-227 184-320 (399)
8 3k3f_A UREA transporter; membr 10.2 94 0.0032 31.3 1.5 60 289-352 50-113 (340)
9 1vk5_A Expressed protein; stru 8.3 61 0.0021 28.5 -0.7 39 422-460 78-116 (157)
10 1u7g_A Probable ammonium trans 6.7 1.7E+03 0.059 22.3 11.0 137 47-227 195-333 (385)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=3.2e-109 Score=861.68 Aligned_cols=391 Identities=30% Similarity=0.511 Sum_probs=360.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccc-ccccccc
Q 044248 46 YAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGR-HNFALKS 124 (489)
Q Consensus 46 ~~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~-~~f~l~~ 124 (489)
+..|+.|+|+|++|||+|||||+|+|+|++|+||++|+++||++|++++++.||++||+++||++.++|||+ .++++.+
T Consensus 2 ~~~d~~w~l~~~~LV~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~~~ 81 (399)
T 2b2h_A 2 SDGNVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALLSG 81 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGGTT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhccC
Confidence 357999999999999999999999999999999999999999999999999999999999999766789998 4566654
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCceee
Q 044248 125 FPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVID 204 (489)
Q Consensus 125 ~~~~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~D 204 (489)
... .++.+++||++||+++++|++|+++||+|+.+|++|+++|+++||||++||+|+ +|||. ++|++|
T Consensus 82 ~~~--~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~---------~lG~~D 149 (399)
T 2b2h_A 82 VKG--EDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLA---------KLGALD 149 (399)
T ss_dssp CCT--HHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH---------HTTCCC
T ss_pred CCC--CchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHH---------hcCCcc
Confidence 432 248899999999999999999999999999999999999999999999999998 89997 489999
Q ss_pred ecCceEeehhhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhccccCCCCCCcc
Q 044248 205 FAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQW 284 (489)
Q Consensus 205 faGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~~~~~~g~~ 284 (489)
||||++||++||++||+++++||||++|. ++.+||||++++++|+++||+||||||+||++.. +
T Consensus 150 FAGs~vVH~~gG~~aL~~a~~LG~R~g~~----~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~-------~----- 213 (399)
T 2b2h_A 150 FAGGMVVHISSGFAALAVAMTIGKRAGFE----EYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAA-------N----- 213 (399)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHCCCTTTT----TSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSS-------S-----
T ss_pred ccCCeEEEechhHHHHHHHHHcCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccc-------c-----
Confidence 99999999999999999999999999863 2347999999999999999999999999998765 2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCCCCcchhHHHHHHHhhHHHHHHHhhhccc
Q 044248 285 SAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEK 364 (489)
Q Consensus 285 ~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~~~v~pw~AliiG~iag~v~~~~~~l~~k 364 (489)
..++++++||++|+++|+++|+++++++ ||+|+..++||+|||||+|||+|++++||+|++||+++|++|+...++++|
T Consensus 214 ~~a~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~k 292 (399)
T 2b2h_A 214 DVAINAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIK 292 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999 999999999999999999999999999999999999999999776688999
Q ss_pred cccccccCccccccchhhHHHHHHHHHhcCC--CCccccccCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcccCCC
Q 044248 365 AKYDDPLEAAQLHGGCGAWGVIFTALLLRRN--SPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRI 442 (489)
Q Consensus 365 l~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~--~~~G~~~gg~~~~l~~Ql~g~~vi~~ws~~~~~i~~~il~~~~~LRv 442 (489)
+|||||||++++||+||+||+|++|+|+++. ...|++| ++.+|++.|++|++++++|+++.++++++++|++.+|||
T Consensus 293 l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g~~Gl~~-g~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~glRv 371 (399)
T 2b2h_A 293 KKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLF-GNPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRV 371 (399)
T ss_dssp TTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHHSCCCGGG-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBC
T ss_pred cCCCCCCCceeccchhhHHHHHHHHHHccccccCCCcccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999752 1247888 568999999999999999999999999999999999999
Q ss_pred CHHHHhcCCcccccccccCCCCCC
Q 044248 443 SPEDEMAGMDLTRHGGFAYVYHDD 466 (489)
Q Consensus 443 ~~e~E~~GlD~~~hg~~ay~~~~~ 466 (489)
++|||++|||.+||||++|+++.+
T Consensus 372 ~~e~E~~GlD~~~hg~~ay~~~~~ 395 (399)
T 2b2h_A 372 SSQEEYVGLDLSQHEEVAYTLEHH 395 (399)
T ss_dssp CHHHHHHCHHHHHHCCCSCC----
T ss_pred CHHHHHhCCCHHHhCcccCCcccc
Confidence 999999999999999999997654
No 2
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=8.1e-100 Score=788.53 Aligned_cols=368 Identities=28% Similarity=0.507 Sum_probs=337.4
Q ss_pred cccchhHHHHHHHHHHHHHH-HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccc-ccccc
Q 044248 45 AYAVDSTYLLFSAYLVFSMQ-LGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGR-HNFAL 122 (489)
Q Consensus 45 ~~~~d~~w~l~~~~lV~~M~-~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~-~~f~l 122 (489)
.+..|+.|+|+|++|||+|| |||+|+|+|++|+||+.|+++||++|++++++.||++||+++||++ ++|+|+ .++++
T Consensus 5 ~~~~d~~w~l~~~~LV~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~~~l 83 (385)
T 1u7g_A 5 ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWLML 83 (385)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTGGG
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcchhhc
Confidence 45689999999999999999 9999999999999999999999999999999999999999999975 789998 45655
Q ss_pred ccCCCC-----CchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcc
Q 044248 123 KSFPTS-----NFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLL 197 (489)
Q Consensus 123 ~~~~~~-----~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~ 197 (489)
.+.+.+ .+++.+++||++||+++++|++|+++||+|+.+|++|+++|+++||||++||+|+ +|||.
T Consensus 84 ~~~~~~~~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~-------- 154 (385)
T 1u7g_A 84 KNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLA-------- 154 (385)
T ss_dssp TTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH--------
T ss_pred cCCCCcccccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhheeEc-chhhh--------
Confidence 544322 2568899999999999999999999999999999999999999999999999998 89997
Q ss_pred cCCceeeecCceEeehhhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhccccC
Q 044248 198 FGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNT 277 (489)
Q Consensus 198 ~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~~ 277 (489)
++|++|||||++||++||++||+++++||||++|. ++.+||||++++++|+++||+||||||+||++..
T Consensus 155 -~lG~~DFAGs~vVH~~gG~aaL~~a~~LG~R~g~~----~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~------ 223 (385)
T 1u7g_A 155 -SHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFG----KEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTA------ 223 (385)
T ss_dssp -HHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTT----CSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSS------
T ss_pred -hcceeeccCCeEEEecchHHHHHHHHHhcCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhc------
Confidence 48999999999999999999999999999999852 2348999999999999999999999999998765
Q ss_pred CCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCCCCcchhHHHHHHHhhHHHHHH
Q 044248 278 GSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIA 357 (489)
Q Consensus 278 ~~~~g~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~~~v~pw~AliiG~iag~v~~~ 357 (489)
+ ..++++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+.
T Consensus 224 -~-----~~a~~a~~nT~lAaaag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~ 297 (385)
T 1u7g_A 224 -N-----EIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLW 297 (385)
T ss_dssp -S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred -c-----chhHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHH
Confidence 2 3578999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred Hhh-hccccccccccCccccccchhhHHHHHHHHHhcCCC-----CccccccCchHHHHHHHHHHHHHHHHHhhhhhHHH
Q 044248 358 CNK-LAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNS-----PYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLF 431 (489)
Q Consensus 358 ~~~-l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~-----~~G~~~gg~~~~l~~Ql~g~~vi~~ws~~~~~i~~ 431 (489)
..+ +++|+|||||||++++||+||+||+|++|+|++++. ..|.++ +.|++.|++|++++++|+++.+++++
T Consensus 298 ~~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g~~~~~G~~~---g~ql~~Ql~g~~~~~~~~~v~~~i~~ 374 (385)
T 1u7g_A 298 GVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGY 374 (385)
T ss_dssp HHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCCCCTTCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCEeecccccHHHHHHHHHhccccccCccccCCcch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 778999999999999999999999999999997621 113333 35999999999999999999999999
Q ss_pred HHHHhcccCCC
Q 044248 432 FILHKLKLLRI 442 (489)
Q Consensus 432 ~il~~~~~LRv 442 (489)
+++|++.+|||
T Consensus 375 ~il~~~~glRv 385 (385)
T 1u7g_A 375 KLADLTVGLRV 385 (385)
T ss_dssp HHHHHHTCSBC
T ss_pred HHHHHccCCcC
Confidence 99999999997
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=3.8e-80 Score=643.65 Aligned_cols=337 Identities=23% Similarity=0.242 Sum_probs=291.6
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccccccccccCCCCCchhhHHHHHHHHHH
Q 044248 64 QLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWAFAI 143 (489)
Q Consensus 64 ~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~~f~l~~~~~~~~~~~~~~fq~~Faa 143 (489)
.+||.+|+.++ +||..+.+.+|++..+ ..+.|++++|. +||.. +..-+...+++||++||+
T Consensus 28 ~iGfGFL~~~L--rk~~~s~v~~n~l~~a-~~~QW~~l~~~-------~Gf~~---------~g~ip~~~~~~fq~~Faa 88 (407)
T 3b9w_A 28 LVGFGFLMVFV--RRYGFSATTGTYLVVA-TGLPLYILLRA-------NGIFG---------HALTPHSVDAVIYAEFAV 88 (407)
T ss_dssp HHHHHHHGGGS--TTCHHHHHHHHHHHHH-HHHHHHHHHHH-------TTTTS---------SCCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHhc-------ccccC---------CCcchHHHHHHHHHHHHH
Confidence 36888899988 9999999999999854 78899999982 22322 112245789999999999
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCceeeecCceEeehhhHHHHHHHH
Q 044248 144 AAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGA 223 (489)
Q Consensus 144 ~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~DfaGs~vVH~~gG~~aLv~a 223 (489)
++++|++|+++||+|+.+|++|++ |.++||||.+||+|+ +||+. ..|++|||||++||++||++||+++
T Consensus 89 ~t~~IvsGAvaeR~kf~~~li~~~-~~~~vY~~~~~wvw~-gG~~~---------~~G~~DfAGs~vVH~~gG~~aLa~a 157 (407)
T 3b9w_A 89 ATGLIAMGAVLGRLRVFQYALLAL-FIVPVYLLNEWLVLD-NASGL---------TEGFQDSAGSIAIHAFGAYFGLGVS 157 (407)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHH-HHHHHHHHHHHHHTT-CTTSS---------CTTCCCTTCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHHHHH-HHHHhccceeEEEeC-Ccchh---------hcceeeccCceEEEeCchHHHHHHH
Confidence 999999999999999999999985 568899999999998 78875 2499999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhccccCCCCCCcchhhhhHHHHHHHHHHHHHH
Q 044248 224 YIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAAL 303 (489)
Q Consensus 224 ~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~~~~~~g~~~~~~~~~~NT~la~a~g~l 303 (489)
++||||++|+++ ++ +||||++++++|+++||+||||||+|. .. + ..++++++||++|+|+|++
T Consensus 158 ~~LG~R~~~~~~--~~-~~~hn~~~~~lGt~lLW~GWfGFN~Gl--~~-------~-----~~~~~a~~NT~lAaaag~l 220 (407)
T 3b9w_A 158 IALTTAAQRAQP--IE-SDATSDRFSMLGSMVLWLFWPSFATAI--VP-------F-----EQMPQTIVNTLLALCGATL 220 (407)
T ss_dssp HHHCCHHHHTSC--CC-CCHHHHHHHHHHHHHHHHHHHHHHHTT--SC-------G-----GGHHHHHHHHHHHHHHHHH
T ss_pred HHhcCccccCCC--Cc-CCCCCHHHHHHHHHHHHHHHHhhhhhh--cc-------c-----hhhHHHHHHhHHHHHHHHH
Confidence 999999876543 33 899999999999999999999999993 22 1 3578999999999999999
Q ss_pred HHHHHHHH-hhCCceeecccccceeceeeeccCCCCcchhHHHHHHHhhHHHHHHHhh-----hccccccccccCccccc
Q 044248 304 TTLFGKRI-LSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNK-----LAEKAKYDDPLEAAQLH 377 (489)
Q Consensus 304 ~~~~~~~~-~~~k~~~~~~~nG~LaGLVaIta~~~~v~pw~AliiG~iag~v~~~~~~-----l~~kl~IDD~~~a~~vH 377 (489)
+|++++++ ++||+|+..++||+|||||+|||+|++++||+|++||+++|++|+...+ +++|+|||||||++++|
T Consensus 221 ~~~~~~~~~~~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vH 300 (407)
T 3b9w_A 221 ATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLH 300 (407)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecc
Confidence 99999987 7899999999999999999999999999999999999999999965443 45779999999999999
Q ss_pred cchhhHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcccCCCCHHHHhcC-------
Q 044248 378 GGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAG------- 450 (489)
Q Consensus 378 g~~Gi~G~l~~glfa~~~~~~G~~~gg~~~~l~~Ql~g~~vi~~ws~~~~~i~~~il~~~~~LRv~~e~E~~G------- 450 (489)
|+||+||+|++++|+.+. + ..|++|++++++|+++.++++++++|+ |+++|+|..|
T Consensus 301 gv~Gi~G~l~~glfa~~~---~----------~~Ql~g~~~~~~~s~v~~~i~~~il~~----r~~~e~e~~g~~~we~p 363 (407)
T 3b9w_A 301 GLPGLLGGFSAILIVPGI---A----------VAQLTGIGITLALALIGGVIAGALIKL----TGTTKQAYEDSHEFIHL 363 (407)
T ss_dssp THHHHHHHHHHHHHSTTC---H----------HHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCSSTTCGGGTSSSC
T ss_pred hHHHHHHHHHHHHHccCC---c----------HHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCHHHHcCCcccccCc
Confidence 999999999999998751 1 159999999999999999999999998 9999999999
Q ss_pred -CcccccccccCCCC
Q 044248 451 -MDLTRHGGFAYVYH 464 (489)
Q Consensus 451 -lD~~~hg~~ay~~~ 464 (489)
+|.+||||++||..
T Consensus 364 ~ld~~~hg~~ayp~~ 378 (407)
T 3b9w_A 364 AGPEDEHKAERLVLE 378 (407)
T ss_dssp CCGGGC---------
T ss_pred cccHHHhchhhccch
Confidence 99999999999754
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-71 Score=584.89 Aligned_cols=367 Identities=20% Similarity=0.167 Sum_probs=293.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccccccccccCCCCCc
Q 044248 51 TYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFPTSNF 130 (489)
Q Consensus 51 ~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~~f~l~~~~~~~~ 130 (489)
.+-.+-=+-|+.. .||.+|-.=+ +|.-.+.+--|++..+++ +.|-++=-++-.. + ....-+
T Consensus 64 ~Yp~fqDv~vMi~-~GfGFLmtfl--kryg~ssv~~n~l~~a~~-~Qwa~l~~g~~~~-----------~----~~g~ip 124 (490)
T 3hd6_A 64 RYPSFQDVHVMVF-VGFGFLMTFL--QRYGFSAVGFNFLLAAFG-IQWALLMQGWFHF-----------L----QDRYIV 124 (490)
T ss_dssp HHHHHHHHHHHHH-THHHHHGGGS--TTCHHHHHHHHHHHHHHH-HHHHHHHHHHTTC-----------B----TTTBEE
T ss_pred cCccchhHHHHHH-HHHHHHHHHH--HHhccHHHHHHHHHHHHH-HHHHHHHHHHhcc-----------c----cCCCcc
Confidence 3443433333333 3555555433 444566677777777766 7777653222110 0 011123
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCceeeecCceE
Q 044248 131 DYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGV 210 (489)
Q Consensus 131 ~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~DfaGs~v 210 (489)
...+++||++||+++++|++||++||+|+.+|++|++++ +++||| .||+ ||. ++|++|||||++
T Consensus 125 ~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~l~-~~vY~~-~~w~-----~L~---------~lG~~DFAGs~v 188 (490)
T 3hd6_A 125 VGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQ-VTLFAV-NEFI-----LLN---------LLKVKDAGGSMT 188 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH-HHHHHH-HHHH-----HHT---------TSCCCCTTCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhh-hHHH-----HHh---------ccCceeecCcee
Confidence 578999999999999999999999999999999999876 689998 4666 444 589999999999
Q ss_pred eehhhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhccccCCCCCCcchhhhhH
Q 044248 211 VHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRT 290 (489)
Q Consensus 211 VH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~~~~~~g~~~~~~~~ 290 (489)
||++||++||+++++||||. |++.+.++.++|||++++++|+++||+||||||+|++..- ..++++
T Consensus 189 VH~~gG~aaLa~a~vLG~R~-~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~~~~-------------~~~~~a 254 (490)
T 3hd6_A 189 IHTFGAYFGLTVTRILYRRN-LEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYHG-------------DSQHRA 254 (490)
T ss_dssp THHHHHHHHHHHHHHTCCTT-GGGGTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTCSSH-------------HHHHHH
T ss_pred eeHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhhccc-------------hHHHHH
Confidence 99999999999999999884 4433344457899999999999999999999999976321 357899
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hhCCceeecccccceeceeeeccCCC-CcchhHHHHHHHhhHHHHHHHhh-----hc
Q 044248 291 AVTTTLAGCTAALTTLFGKRI--LSGHWNVTDVCNGLLGGFAAITAGCS-VVEPWAAIVCGFVAAVVLIACNK-----LA 362 (489)
Q Consensus 291 ~~NT~la~a~g~l~~~~~~~~--~~~k~~~~~~~nG~LaGLVaIta~~~-~v~pw~AliiG~iag~v~~~~~~-----l~ 362 (489)
++||++|+|+|+++|++++++ ++||+|+.+++||+|||||||||+|+ +++||+|++||+++|++|+...+ ++
T Consensus 255 ~~NT~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~ 334 (490)
T 3hd6_A 255 AINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLE 334 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999986 58999999999999999999999999 69999999999999999965533 56
Q ss_pred cccccccccCccccccchhhHHHHHHHHHhcCCC-----Cccccc--------c--CchHHHHHHHHHHHHHHHHHhhhh
Q 044248 363 EKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNS-----PYGLFM--------G--GGGKLLAAHVIQILVVAGWVSATM 427 (489)
Q Consensus 363 ~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~-----~~G~~~--------g--g~~~~l~~Ql~g~~vi~~ws~~~~ 427 (489)
+|+|||||||++++||+||+||+|++|+|+.... ..|+++ + ++++|++.|++|++++++|+++.+
T Consensus 335 ~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa~~~~~~~~g~~Gl~~~f~~~~~~gg~~~~~ql~~Ql~gv~~~~~~a~v~~ 414 (490)
T 3hd6_A 335 SRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGG 414 (490)
T ss_dssp HHHCCCCTTCHHHHTHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCccccchHHhhHHHHHHHHHHHHHhccccccccccCcceeccccccccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999986421 145554 2 236899999999999999999999
Q ss_pred hHHHHHHHhcccCCCCHHHHhcCCcccccccccCCCCCC
Q 044248 428 GPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDD 466 (489)
Q Consensus 428 ~i~~~il~~~~~LRv~~e~E~~GlD~~~hg~~ay~~~~~ 466 (489)
+++++++|++.++|+++|+|.+|+|..|+.++.|+...+
T Consensus 415 ~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~~~~~~ 453 (490)
T 3hd6_A 415 IIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNSTVYIP 453 (490)
T ss_dssp HHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC-----
T ss_pred HHHHHHHhhccCCCCCHHHHhCCCceeecCcccccccCC
Confidence 999999999999999999999999999999988876543
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=62.07 E-value=40 Score=34.91 Aligned_cols=141 Identities=14% Similarity=0.147 Sum_probs=86.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccccccccccCCC
Q 044248 48 VDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFPT 127 (489)
Q Consensus 48 ~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~~f~l~~~~~ 127 (489)
-|..+.++.+.+.|+--+| +.+|+.....+.++++...+..+.+.+.|.++-|-+-.|..
T Consensus 175 hn~~~~~lGt~lLW~GWfG---FN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~----------------- 234 (407)
T 3b9w_A 175 TSDRFSMLGSMVLWLFWPS---FATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKA----------------- 234 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC-----------------
T ss_pred CCHHHHHHHHHHHHHHHHh---hhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC-----------------
Confidence 4667777888877775555 46675555667788889999999999999998775433321
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCceeeecC
Q 044248 128 SNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAG 207 (489)
Q Consensus 128 ~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~DfaG 207 (489)
+. ......+.|-. ++|..+ ++=.++..-++.+++ +++++.....+. .-+|. .++++.|--|
T Consensus 235 ---~~-~~~~nG~LAGL-VAITa~--~~~v~p~~A~iIG~i-aG~i~~~~~~~l---~~~l~--------~~l~iDD~l~ 295 (407)
T 3b9w_A 235 ---SI-VDMANAALAGG-VAIGSV--CNIVGPVGAFVIGLL-GGAISVVGFVFI---QPMLE--------SKAKTIDTCG 295 (407)
T ss_dssp ---CH-HHHHHHTTHHH-HHHTTT--TTTSCHHHHHHHHHH-HHHHHHHHHHTH---HHHHH--------HHSCCCCTTC
T ss_pred ---CH-HHHHHhhhhhh-heeccC--CCCCCHHHHHHHHHH-HHHHHHHHHHHH---HHHHH--------hcCCCCCCCC
Confidence 01 11112222111 122222 344677777777765 444543211111 01121 1478999999
Q ss_pred ceEeehhhHHHHHHHHHhhc
Q 044248 208 SGVVHMVGGIAGLWGAYIEG 227 (489)
Q Consensus 208 s~vVH~~gG~~aLv~a~~lG 227 (489)
.-.||.++|+.|...+-+..
T Consensus 296 a~~vHgv~Gi~G~l~~glfa 315 (407)
T 3b9w_A 296 VHNLHGLPGLLGGFSAILIV 315 (407)
T ss_dssp HHHHTTHHHHHHHHHHHHHS
T ss_pred CeecchHHHHHHHHHHHHHc
Confidence 99999999999998887764
No 6
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=34.78 E-value=1.2e+02 Score=32.19 Aligned_cols=141 Identities=15% Similarity=0.137 Sum_probs=83.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhh-ccCCCCccccccccccccC
Q 044248 48 VDSTYLLFSAYLVFSMQLGFAMLCAGSVR-AKNTMNIMLTNVLDAAAGGLFYYLFGFAFA-FGTPSNGFIGRHNFALKSF 125 (489)
Q Consensus 48 ~d~~w~l~~~~lV~~M~~Gfalle~G~vr-~kn~~~il~kn~~~~~v~~i~~~lvGy~la-fG~~~~g~iG~~~f~l~~~ 125 (489)
-|..+.++.+.+.|+--+|| .+|+.. ...+..+++...+..+.+++.|.++-+-+. .|..
T Consensus 221 hn~~~a~LGt~lLW~GWfGF---N~gs~~~~~~~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~--------------- 282 (490)
T 3hd6_A 221 QSDLFAMIGTLFLWMYWPSF---NSAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKL--------------- 282 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---TTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC---------------
T ss_pred CCHHHHHHHHHHHHHHHHhh---chhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------
Confidence 46678888888888877876 467765 344567788888999999999999876431 2210
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhhhhc-ccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCceee
Q 044248 126 PTSNFDYSYFLYQWAFAIAAAGITSGSIAE-RTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVID 204 (489)
Q Consensus 126 ~~~~~~~~~~~fq~~Faa~aatIvsGavae-R~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~D 204 (489)
+. ......+.|- ....++-++ =.....-++.+++ +++++.....+. .-+|.. ++++.|
T Consensus 283 -----s~-~~~~nG~LAG---LVAIT~~a~~~v~P~~AliIG~i-aG~i~~~~~~~l---~~~l~~--------kl~iDD 341 (490)
T 3hd6_A 283 -----DM-VHIQNATLAG---GVAVGTAAEMMLMPYGALIIGFV-CGIISTLGFVYL---TPFLES--------RLHIQD 341 (490)
T ss_dssp -----CH-HHHHHGGGHH---HHHTTTTTTTCSCHHHHHHHHHH-HHHHHHHHHHHH---HHHHHH--------HHCCCC
T ss_pred -----CH-HHhhhceeee---EEEEccCcccccCHHHHHHHHHH-HHHHHHHHHHHh---HHHHHH--------HCCCCc
Confidence 11 0111111111 111112223 2456666666655 344432211111 012221 478999
Q ss_pred ecCceEeehhhHHHHHHHHHhhc
Q 044248 205 FAGSGVVHMVGGIAGLWGAYIEG 227 (489)
Q Consensus 205 faGs~vVH~~gG~~aLv~a~~lG 227 (489)
--|.-.||..+|+.|...+-+..
T Consensus 342 ~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 342 TCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp TTCHHHHTHHHHHHHHHHHHHHH
T ss_pred cccchHHhhHHHHHHHHHHHHHh
Confidence 99999999999999988776654
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=24.89 E-value=4.2e+02 Score=27.07 Aligned_cols=135 Identities=20% Similarity=0.205 Sum_probs=85.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccccccccc
Q 044248 47 AVDSTYLLFSAYLVFSMQLGFAMLCAGSVRA--KNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKS 124 (489)
Q Consensus 47 ~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~--kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~~f~l~~ 124 (489)
.-|..+.++.+.+.++--+|| .+|+.-. ..+..+++...+..+.+.+.|.++-|-. |+.
T Consensus 184 ~hn~~~~~lG~~lLW~GWfGF---N~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~-------------- 244 (399)
T 2b2h_A 184 PHSIPLTLIGAALLWFGWFGF---NGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKP-------------- 244 (399)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH---HHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCC--------------
T ss_pred CCCHHHHHHHHHHHHHHHHhh---cHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCC--------------
Confidence 346778888888888777775 4554333 3456778888999999999999987754 421
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCceee
Q 044248 125 FPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVID 204 (489)
Q Consensus 125 ~~~~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~D 204 (489)
+. ....+.+.|-. ++| .+-++=.++..-++..++ +++++.... ++.+ ++++.|
T Consensus 245 ------~~-~~~~nG~lAGL-VaI--Ta~~~~v~p~~A~iiG~i-ag~i~~~~~--------~l~~--------kl~iDD 297 (399)
T 2b2h_A 245 ------GS-LGIVSGAIAGL-AAI--TPAAGFVDVKGAIVIGLV-AGIVCYLAM--------DFRI--------KKKIDE 297 (399)
T ss_dssp ------CH-HHHHHHHHHHH-HHH--TTTTTTCCHHHHHHHHHH-HHHHHHHHH--------HHHH--------HTTCCC
T ss_pred ------CH-HHHHHHHHHhh-hhh--ccccccCCHHHHHHHHHH-HHHHHHHHH--------HHHH--------HcCCCC
Confidence 11 11112222211 112 233355677777777766 444443211 2221 578999
Q ss_pred ecCceEeehhhHHHHHHHHHhhc
Q 044248 205 FAGSGVVHMVGGIAGLWGAYIEG 227 (489)
Q Consensus 205 faGs~vVH~~gG~~aLv~a~~lG 227 (489)
--+.-.||..+|+.|...+-+..
T Consensus 298 ~l~a~~vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 298 SLDAWAIHGIGGLWGSVAVGILA 320 (399)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceeccchhhHHHHHHHHHHc
Confidence 99999999999999998887764
No 8
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=10.17 E-value=94 Score=31.28 Aligned_cols=60 Identities=17% Similarity=0.009 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----hhCCceeecccccceeceeeeccCCCCcchhHHHHHHHhhH
Q 044248 289 RTAVTTTLAGCTAALTTLFGKRI----LSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAA 352 (489)
Q Consensus 289 ~~~~NT~la~a~g~l~~~~~~~~----~~~k~~~~~~~nG~LaGLVaIta~~~~v~pw~AliiG~iag 352 (489)
+..+...+++..+.+++.++.+- ..|-+ --||+|+|+...+-.......|..+++|.+-.
T Consensus 50 ~~a~~allG~~~stltA~llg~~~~~i~~GL~----GfNg~Lvglal~~f~~~~~~~~~l~i~~~~ls 113 (340)
T 3k3f_A 50 TLGVCAVLGTAASTLTAQLLGVDKPLVRAGLF----GFNGTLAGIALPFFFNYEPAMLGYVALNGAFT 113 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHTTTT----THHHHHHHHHHHHHBCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhh----hhhHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34566677777777777666531 22322 45899998764333333334444444544443
No 9
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=8.28 E-value=61 Score=28.45 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=34.1
Q ss_pred HHhhhhhHHHHHHHhcccCCCCHHHHhcCCccccccccc
Q 044248 422 WVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFA 460 (489)
Q Consensus 422 ws~~~~~i~~~il~~~~~LRv~~e~E~~GlD~~~hg~~a 460 (489)
|.=-.-++.-.+||+...+|+..++|..-||...|...|
T Consensus 78 Y~QPLHYLTN~LLkqWDQ~RiGs~dE~kpLd~IIhP~kA 116 (157)
T 1vk5_A 78 YGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKA 116 (157)
T ss_dssp HCCCCCHHHHHHHHHHHHTTTTCSSCCCCGGGTSCHHHH
T ss_pred hcCcHHHHHHHHHHHHHHhhcCCccccCchhhhccchhh
Confidence 444678899999999999999999999999999987665
No 10
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=6.73 E-value=1.7e+03 Score=22.25 Aligned_cols=137 Identities=20% Similarity=0.072 Sum_probs=86.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccccccccc
Q 044248 47 AVDSTYLLFSAYLVFSMQLGFAMLCAGSVRA--KNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKS 124 (489)
Q Consensus 47 ~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~--kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~~f~l~~ 124 (489)
.-|..+.++.+.+.++--+|| .+|+.-. ..+..+++...+..+.+.+.|.++-|- -.|+
T Consensus 195 ~hn~~~~~lGt~lLW~GWfGF---N~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~-~~gk--------------- 255 (385)
T 1u7g_A 195 PHNLPMVFTGTAILYIGWFGF---NAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWA-LRGL--------------- 255 (385)
T ss_dssp GGGHHHHHHHHHHHHHHHHHH---HHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSS---------------
T ss_pred CCCHHHHHHHHHHHHHHHhhh---cchhhhhccchhHhHHHHHHHHHHHHHHHHHHHHHH-HcCC---------------
Confidence 346778888888888877775 4454332 345677888889999999999998763 2221
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCceee
Q 044248 125 FPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVID 204 (489)
Q Consensus 125 ~~~~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~D 204 (489)
+ +.. -..+...|-. ++| .+-++-.++..-++..++ +++++.... -++.+ ++++.|
T Consensus 256 -~----~~~-~~~nG~lAGL-VaI--Ta~~~~v~p~~A~iiG~i-ag~i~~~~~-------~~l~~--------~l~iDD 310 (385)
T 1u7g_A 256 -P----SLL-GACSGAIAGL-VGV--TPACGYIGVGGALIIGVV-AGLAGLWGV-------TMLKR--------LLRVDD 310 (385)
T ss_dssp -C----CHH-HHHHHHHHHH-HHH--TTTTTTSCHHHHHHHHHH-HHHHHHHHH-------HHHHH--------HHCSCC
T ss_pred -C----CHH-HHHHHHHHhh-hhh--ccCCCCCCHHHHHHHHhH-HHHHHHHHH-------HHHHH--------hCCCCC
Confidence 0 111 1112222221 122 223356777777777766 455543222 12321 478999
Q ss_pred ecCceEeehhhHHHHHHHHHhhc
Q 044248 205 FAGSGVVHMVGGIAGLWGAYIEG 227 (489)
Q Consensus 205 faGs~vVH~~gG~~aLv~a~~lG 227 (489)
--+.-.||..+|+.|...+-+..
T Consensus 311 ~l~a~~vHgv~Gi~G~l~~glfa 333 (385)
T 1u7g_A 311 PCDVFGVHGVCGIVGCIMTGIFA 333 (385)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEeecccccHHHHHHHHHhc
Confidence 99999999999999998887775
Done!