RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 044248
(489 letters)
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter. The Ammonium Transporter
(Amt) Family (TC 2.A.49) All functionally characterized
members of the Amt family are ammonia or ammonium uptake
transporters. Some, but not others, also transport
methylammonium. The mechanism of energy coupling, if
any, to methyl-NH2 or NH3 uptake by the AmtB protein of
E. coli is not entirely clear. NH4+ uniport driven by
the pmf, energy independent NH3 facilitation, and
NH4+/K+ antiport have been proposed as possible
transport mechanisms. In Corynebacterium glutamicum and
Arabidopsis thaliana, uptake via the Amt1 homologues of
AmtB has been reported to be driven by the pmf
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 403
Score = 447 bits (1152), Expect = e-155
Identities = 191/425 (44%), Positives = 239/425 (56%), Gaps = 37/425 (8%)
Query: 51 TYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFG-- 108
+LL +A LVF MQ GFA+L AG VR+KN +NIM+ N+LD A G L ++LFG++ AFG
Sbjct: 2 AWLLIAAALVFFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGED 61
Query: 109 TPSNGFIGRHNFALKSFPTSNF--------DYSYFLYQWAFAIAAAGITSGSIAERTQFV 160
P NGFIG F LK+F D +FL+Q FA AA I SG++AER +F
Sbjct: 62 NPINGFIGTGGFGLKNFLYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFS 121
Query: 161 AYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGL 220
AYL++S T VYP V+HW W GW L+ GV+DFAG GVVH+VGG+AGL
Sbjct: 122 AYLLFSVLWTTLVYPPVAHWVWGGGGW---------LYKLGVLDFAGGGVVHIVGGVAGL 172
Query: 221 WGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSH 280
A + GPRIGRF R +R H+ LVVLGTF+LWFGW+GFN GS A N +
Sbjct: 173 AAALVLGPRIGRFPRP--VAIRPHNVPLVVLGTFILWFGWFGFNAGSA----LAANGTA- 225
Query: 281 YGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVE 340
AV T LA LT L + G + CNG+L G AIT GC VV
Sbjct: 226 -------AYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVT 278
Query: 341 PWAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRR---NS 396
PW AI+ G VA V+ +A +KL +K K DDPL+A +HG G WG+I T L
Sbjct: 279 PWGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGV 338
Query: 397 PYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRH 456
G +GG GK L +I I + W + IL K LR+S E+E G+DL H
Sbjct: 339 GTGGLLGGNGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEH 398
Query: 457 GGFAY 461
G FAY
Sbjct: 399 GEFAY 403
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family.
Length = 399
Score = 399 bits (1028), Expect = e-136
Identities = 163/420 (38%), Positives = 219/420 (52%), Gaps = 29/420 (6%)
Query: 50 STYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFG- 108
+ LL +A ++F MQ GFA+L +G VR+KN +NI+ N D A G L Y+ FG++ AFG
Sbjct: 1 AFILLAAALVIF-MQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWGFGYSLAFGK 59
Query: 109 -TPSNGFIGRHNFALKSFPTSN-FDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYS 166
+GFIG + D +FL+Q FA A I SG++AER +F AYL++S
Sbjct: 60 RYGFSGFIGNLGVSAAGIQWGTLPDGLFFLFQMMFAATAITIVSGAVAERIKFSAYLLFS 119
Query: 167 SFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIE 226
+ L VYP V+HW W GW + ++DFAGS VVH+ GG AGL A +
Sbjct: 120 ALLGTLVYPPVAHWVWGEGGWLAKLGV--------LVDFAGSTVVHIFGGYAGLAAALVL 171
Query: 227 GPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSA 286
GPRIGRF ++ + H+ VLGTF+LWFGW+GFN GS
Sbjct: 172 GPRIGRFTDKNEA-ITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARAI-------- 222
Query: 287 IGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIV 346
AV T LA LT L R+ +G N+ + NG L G AITA C VV PW A++
Sbjct: 223 ---AAVNTNLAAAGGGLTALLISRLKTGKPNMLGLANGALAGLVAITAACGVVTPWGALI 279
Query: 347 CGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRR----NSPYGLF 401
G +A VV ++ KL EK DDPL+ +HG G WG I + + YG
Sbjct: 280 IGLIAGVVSVLGYKKLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVPTSGIYGGL 339
Query: 402 MGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAY 461
+GGG K L +I I V+ + L +L LR+S E+E G+D+ HG AY
Sbjct: 340 LGGGFKQLGVQLIGIAVILAYAFGVTFILGLLLGLTLGLRVSEEEEEVGLDVAEHGETAY 399
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and
metabolism].
Length = 409
Score = 308 bits (791), Expect = e-101
Identities = 137/425 (32%), Positives = 200/425 (47%), Gaps = 39/425 (9%)
Query: 49 DSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFG 108
D+ ++L SA LV M G A+ G VR KN +N ++ + + A L + G++ AFG
Sbjct: 5 DTAWMLLSAALVLLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFG 64
Query: 109 TPSNGFIGRH--------NFALKSFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFV 160
NGFIG FA + + +F +Q FA + SG++AER +F
Sbjct: 65 PDGNGFIGNLDQFFLNGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFS 124
Query: 161 AYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGL 220
AYL++S + VYP V+HW W GW L G +DFAG VVH+ G A L
Sbjct: 125 AYLLFSVLWSTLVYPPVAHWVWGGGGW---------LALLGALDFAGGTVVHINAGFAAL 175
Query: 221 WGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSH 280
A + G RIG + + H+ LVVLG +LWFGW+GFN GS L+A +
Sbjct: 176 AAALVLGKRIGGKPVA----IPPHNLPLVVLGAALLWFGWFGFNAGS---ALAANGVAAL 228
Query: 281 YGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVE 340
V T LA AL + + + +G ++ +G + G AIT V
Sbjct: 229 ---------AFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVS 279
Query: 341 PWAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYG 399
PW A++ G +A V+ A L +K DD L+ +HG G G I T + G
Sbjct: 280 PWGALIIGLIAGVICYFAVKLLKKKLGVDDALDVFGVHGVGGIVGAILTGIF--AAPAVG 337
Query: 400 LFMG---GGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRH 456
G GGG L ++ +LV + + +L + LR+S E+E+ G+D++ H
Sbjct: 338 GGGGLFYGGGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLIIGLRVSEEEELEGLDISEH 397
Query: 457 GGFAY 461
G AY
Sbjct: 398 GESAY 402
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine
subtype. Members of this protein family are well
conserved subclass of putative ammonimum transporters,
belonging to the much broader set of
ammonium/methylammonium transporter described by
TIGR00836. Species with this transporter tend to be
marine bacteria. Partial phylogenetic profiling (PPP)
picks a member of this protein family as the single
best-scoring protein vs. a reference profile for the
marine environment Genome Property for a large number of
different query genomes. This finding by PPP suggests
that this transporter family represents an important
adaptation to the marine environment.
Length = 404
Score = 233 bits (597), Expect = 4e-72
Identities = 142/430 (33%), Positives = 200/430 (46%), Gaps = 43/430 (10%)
Query: 46 YAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAF 105
YA+D+ Y L S LV M GFAML AG VR+KNT I+ N+ A + Y L G+
Sbjct: 1 YALDTFYFLISGALVMWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNI 60
Query: 106 AF---GTPSNGFIGRHNFALKSFPTSNF-------DYSY---FLYQWAFAIAAAGITSGS 152
+ G G +G + DYS F +Q F A I SG+
Sbjct: 61 MYPGGGIFLGGILGSFLLGADNPVGDLIAGFEGDADYSSGSDFFFQVVFVATAMSIVSGA 120
Query: 153 IAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVH 212
+AER + +L+++ LTGF+YP+ W W G L G DFAGSG+VH
Sbjct: 121 VAERMKLWPFLLFAVVLTGFIYPIEGSWTWG----------GGWLDDLGFSDFAGSGIVH 170
Query: 213 MVGGIAGLWGAYIEGPRIGRFDRSGQSV-LRGHSASLVVLGTFMLWFGWYGFNPGSFTKI 271
M G A L G + GPR G++ ++G+ + G + L LGTF+LW GW+GFN GS +
Sbjct: 171 MAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQLAL 230
Query: 272 LSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAA 331
+ +A+ R T A A+ L ++L G ++T V NG L G A
Sbjct: 231 SDVADA-------NAVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVA 283
Query: 332 ITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALL 391
ITA P AA + G V V+++ L +K K DDP+ A +HG G WG + +
Sbjct: 284 ITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPI- 342
Query: 392 LRRNSPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGM 451
G A +I + WV T ++FIL +R+S E+E G+
Sbjct: 343 -----------TNGDASFGAQLIGAATIFAWVFVTSLIVWFILKATMGIRVSEEEEYEGL 391
Query: 452 DLTRHGGFAY 461
D+ G AY
Sbjct: 392 DIAECGMEAY 401
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional.
Length = 428
Score = 146 bits (371), Expect = 3e-39
Identities = 119/424 (28%), Positives = 187/424 (44%), Gaps = 39/424 (9%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAF 107
D+ +++ LV M + G A+ G +R KN ++++ + A + + ++G++ AF
Sbjct: 31 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAF 90
Query: 108 GTPSNGFIGRHNFALK-----SFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAY 162
G + F + LK + S + Y + +Q +FA G+ G++AER +F A
Sbjct: 91 GEGNAFFGNFNWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAV 150
Query: 163 LIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWG 222
LI+ Y ++H W G LL G +DFAG VVH+ +AGL G
Sbjct: 151 LIFVVVWLTLSYIPIAHMVWG----------GGLLASDGALDFAGGTVVHINAAVAGLVG 200
Query: 223 AYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYG 282
AY+ G R+G G+ + H+ +V GT +L+ GW+GFN GS A N
Sbjct: 201 AYLLGKRVG----FGKEAFKPHNLPMVFTGTAILYIGWFGFNAGS----AGAAN------ 246
Query: 283 QWSAIGRTA-VTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEP 341
I A V T +A A L +FG+ L G ++ C+G + G +T C V
Sbjct: 247 ---EIAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGV 303
Query: 342 WAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGL 400
A++ G VA + L L + DDP + +HG CG G I T + S G+
Sbjct: 304 GGALIIGVVAGLAGLWGVTMLKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAAS-SLGGV 362
Query: 401 FMGGG---GKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHG 457
G G + + I + W + + LR+ E E G+D+ HG
Sbjct: 363 GYAEGVTMGHQVLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHG 422
Query: 458 GFAY 461
AY
Sbjct: 423 ENAY 426
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and
related proteins; solute-binding domain. This
multivitamin transporter SMVT (product of the SLC5A6
gene) transports biotin, pantothenic acid and lipoate,
and is essential for mediating biotin uptake into
mammalian cells. SMVT is expressed in the placenta,
intestine, heart, brain, lung, liver, kidney and
pancreas. Biotin may regulate its own cellular uptake
through participation in holocarboxylase
synthetase-dependent chromatin remodeling events at SMVT
promoter loci. The cis regulatory elements, Kruppel-like
factor 4 and activator protein-2, regulate the activity
of the human SMVT promoter in the intestine.
Glycosylation of the hSMVT is important for its
transport function. This subgroup belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 527
Score = 31.4 bits (71), Expect = 1.2
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 202 VIDFAGSGVV-----HMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFML 256
V+ FAG V GGIA +W G RI FD + + R +L V G F++
Sbjct: 185 VVMFAGQLAVIIVGSIQAGGIARVWRVAANGSRIAGFDLNPDPLERHTFWTLGVGGVFLM 244
Query: 257 WFGWYGFNPGSFTKILSA 274
YG N + LS+
Sbjct: 245 -LALYGVNQAQVQRYLSS 261
>gnl|CDD|223148 COG0070, GltB, Glutamate synthase domain 3 [Amino acid transport
and metabolism].
Length = 301
Score = 30.8 bits (70), Expect = 1.7
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 449 AGMDLTRHGGFAYVYHDDDDVQSNGIQLRKIEPTATTPS 487
AGM GG AYV + G+ +E + T
Sbjct: 202 AGM----SGGVAYVRGEVGSDFPLGVNAELVELESLTEE 236
>gnl|CDD|238588 cd01183, INT_SG1_C, INT_SG1, DNA breaking-rejoining enzymes,
integrase/recombinases subgroup 1, C-terminal catalytic
domain. The CD contains mainly predicted
integrase/recombinase and site-specific XerD
recombinases. The members of this CD are found
predominantly in proteobacteria. These proteins have not
been biochemically characerised as yet.
Length = 196
Score = 28.5 bits (64), Expect = 5.8
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 138 QWAFAIAAAG---ITSGSIAERTQFVAYLIYSSFL 169
QWAF I A R F+ L+YS+ L
Sbjct: 6 QWAFVIDTVASLPAQDPEHAARLLFLLALLYSTGL 40
>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class)
[Posttranslational modification, protein turnover,
chaperones].
Length = 436
Score = 28.5 bits (64), Expect = 8.2
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 11/96 (11%)
Query: 205 FAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFN 264
G++ + G+ L+ + G + S L S V + F Y
Sbjct: 307 IGLLGIILFIIGLLLLFPSGTMGYLVS---ISLFLTLAILSILFKVFLGRLPAFKIY--- 360
Query: 265 PGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCT 300
K++ A + S G IG T T
Sbjct: 361 -----KLVRATKSKSGTGNEELIGLVGKTVTPLRPE 391
>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2
and related proteins; solute-binding domain. SMCT2 is a
low-affinity transporter for short-chain fatty acids,
lactate, pyruvate, and nicotinate. Human SMCT2 (hSMCT2)
is encoded by the SLC5A12 gene. SMCT2 is expressed in
the kidney, small intestine, skeletal muscle, and
retina. In the kidney, it is expressed in the apical
membrane of the proximal convoluted tubule, along the
entire length of the tubule (in contrast to the
high-affinity monocarboxylate transporter SMCT1,
belonging to a different family, which is limited to the
S3 segment of the tubule). SMCT2 may initiate lactate
absorption in the early parts of the tubule. In the
retina, SMCT1 and SMCT2 may play a differential role in
monocarboxylate transport in a cell type-specific
manner, SMCT2 is expressed exclusively in Muller cells.
Nicotine transport by hSMCT2 is inhibited by several
non-steroidal anti-inflammatory drugs. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 529
Score = 28.7 bits (64), Expect = 8.4
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 214 VGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILS 273
GG +W G R+ FD + R ++ V GTF W G YG N + + +S
Sbjct: 205 NGGFTNVWETAYNGSRLNIFDFDVDPLRRHTFWTITVGGTFT-WLGIYGVNQSTIQRCIS 263
>gnl|CDD|107388 cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the GluR5-7 subunits of Kainate receptor.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the GluR5-7 subunits of Kainate
receptor. While this N-terminal domain belongs to the
periplasmic-binding fold type I superfamily, the
glutamate-binding domain of the iGluR is structurally
homologous to the periplasmic-binding fold type II. The
LIVBP-like domain of iGluRs is thought to play a role
in the initial assembly of iGluR subunits, but it is
not well understood how this domain is arranged and
functions in intact iGluR. There are five types of
kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2,
which are structurally similar to AMPA and NMDA
subunits of ionotropic glutamate receptors. KA1 and KA2
subunits can only form functional receptors with one of
the GluR5-7 subunits. Moreover, GluR5-7 can also form
functional homomeric receptor channels activated by
kainate and glutamate when expressed in heterologous
systems. Kainate receptors are involved in excitatory
neurotransmission by activating postsynaptic receptors
and in inhibitory neurotransmission by modulating
release of the inhibitory neurotransmitter GABA through
a presynaptic mechanism. Kainate receptors are closely
related to AMAP receptors. In contrast of AMPA
receptors, kainate receptors play only a minor role in
signaling at synapses and their function is not well
defined.
Length = 384
Score = 28.5 bits (63), Expect = 8.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 2 ATSLSCSADQLA----SFFGPNATDATSAASLICSQLE 35
AT +C DQLA + FGP+ T+A IC+ LE
Sbjct: 61 ATKKAC--DQLALGVVAIFGPSQGSCTNAVQSICNALE 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.435
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,581,237
Number of extensions: 2595155
Number of successful extensions: 3649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3583
Number of HSP's successfully gapped: 108
Length of query: 489
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 388
Effective length of database: 6,457,848
Effective search space: 2505645024
Effective search space used: 2505645024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)