RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 044248
(489 letters)
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 177 bits (449), Expect = 2e-51
Identities = 103/403 (25%), Positives = 169/403 (41%), Gaps = 35/403 (8%)
Query: 49 DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAF 107
D+ +++ LV M + G A+ G +R KN ++++ + A + + ++G++ A
Sbjct: 7 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAS 66
Query: 108 GTPSNGFIGRHNFALKSFPTSN-----FDYSYFLYQWAFAIAAAGITSGSIAERTQFVAY 162
G +N F + LK+ + + Y + +Q +FA G+ G++AER +F A
Sbjct: 67 GEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAV 126
Query: 163 LIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWG 222
LI+ Y ++H W G LL G +DFAG VVH+ IAGL G
Sbjct: 127 LIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVHINAAIAGLVG 176
Query: 223 AYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYG 282
AY IG+ G+ + H+ +V GT +L+ GW+G +N GS
Sbjct: 177 AY----LIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFG------------FNAGSAGT 220
Query: 283 QWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPW 342
V T +A A L +FG+ L G ++ C+G + G +T C +
Sbjct: 221 ANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVG 280
Query: 343 AAIVCGFVAAVVL-IACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLF 401
A++ G VA + L + DDP + +HG CG G I T + + F
Sbjct: 281 GALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGF 340
Query: 402 MGGG--GKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRI 442
G G L + I + W + + LR+
Sbjct: 341 AEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383
>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 443
Score = 32.0 bits (73), Expect = 0.17
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 19/90 (21%)
Query: 137 YQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVS---------HWFWSVDGW 187
W +I TS + AE + L+ + TGF++ + WF W
Sbjct: 363 MIWPMSIMMKAFTSQNDAEIKTCIKMLMDTDAGTGFMHESFNKNDPKNFTRAWF----AW 418
Query: 188 ASASNTGDLLFGSGVIDFAGSGVVHMVGGI 217
+ LFG ++ G V ++ I
Sbjct: 419 QNT------LFGELILKLVNEGKVDLLNSI 442
>d1ecia_ a.33.1.1 (A:) Ectatomin subunit A, EA {Ant (Ectatomma
tuberculatum), venom [TaxId: 39300]}
Length = 37
Score = 27.0 bits (59), Expect = 0.47
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 336 CSVVEPWAAIVCGFVAAVVLIACNKL 361
C VEPWA G +A + C KL
Sbjct: 12 CPTVEPWAKKCSGDIATYIKRECGKL 37
>d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 287
Score = 28.9 bits (64), Expect = 1.2
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 12/58 (20%)
Query: 335 GCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGG-CGAWGVIFTALL 391
G VE C AC +Y++P + + G CG W FT
Sbjct: 108 GAKNVE---NHYCD--------ACQLSNRFPRYNNPEKLLETRCGRCGEWANCFTLCC 154
>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting
protein PsbB {Thermosynechococcus elongatus [TaxId:
146786]}
Length = 488
Score = 28.6 bits (64), Expect = 1.8
Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 13/89 (14%)
Query: 186 GWASASNTGDLLFGSGVIDFAGSGVVHMVG----GIAGLWGAYI------EGPRIGRFDR 235
W+ S TG+ G F G + H+V +A W PR G
Sbjct: 73 SWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPAL 132
Query: 236 SGQSVLRGHSASLVVLGTFMLWFGWYGFN 264
+ H L + G FG +
Sbjct: 133 DLPKMFGIH---LFLAGLLCFGFGAFHLT 158
>d3pmga3 c.84.1.1 (A:304-420) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 117
Score = 27.3 bits (60), Expect = 2.0
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 8/99 (8%)
Query: 264 NPGSFTKILSAYNTGSHY---GQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTD 320
NP +++A Y R+ T+ A T + +G +
Sbjct: 1 NPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGN 60
Query: 321 VC--NGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIA 357
+ + L G A + ++
Sbjct: 61 LMDASKLSLCGE---ESFGTGSDHIREKDGLWAVLAWLS 96
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
{Clostridium perfringens [TaxId: 1502]}
Length = 426
Score = 27.8 bits (62), Expect = 2.9
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 19/79 (24%)
Query: 137 YQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVS---------HWFWSVDGW 187
Y W A++ G+T+ + E Q + L + TG+++ WF W
Sbjct: 354 YIWHIALSMQGLTTNNQEEIDQLIKLLKETDAGTGYMHEGFHVDDPTKFTRDWF----AW 409
Query: 188 ASASNTGDLLFGSGVIDFA 206
+++ LF + +
Sbjct: 410 SNS------LFSHFIYEKV 422
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 27.5 bits (60), Expect = 4.5
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 1/100 (1%)
Query: 137 YQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDL 196
WA ++ +L+Y+S TG V H A +
Sbjct: 218 LDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQ-HSTAGYLLGALLTMRYTF 276
Query: 197 LFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRS 236
+ F + + G ++G + G F+ +
Sbjct: 277 DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGT 316
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Length = 297
Score = 26.4 bits (58), Expect = 7.5
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 78 KNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFAL 122
+ + + ++ G+ LFG +F S +
Sbjct: 225 GPLLLEVESWIIGGVVAGVAISLFGAVLSFLPISGLAVTALGVIG 269
>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 305
Score = 26.0 bits (57), Expect = 10.0
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 113 GFIGRHNFALKSFPTSNFDYSYF--LYQWAFAIAAAGITSGSIAE------RTQFVAYLI 164
G R K F SNFD+ + L + I + G ++ + F+ + I
Sbjct: 82 GIPERKILNGKFFFISNFDFKRYCKLIENPITIISDDCWGGLVSSYLGFKFNSPFINFYI 141
Query: 165 YS 166
++
Sbjct: 142 HN 143
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.435
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,865,227
Number of extensions: 88305
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 17
Length of query: 489
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 400
Effective length of database: 1,185,626
Effective search space: 474250400
Effective search space used: 474250400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)