Query 044251
Match_columns 686
No_of_seqs 764 out of 3460
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.4E-64 1.2E-68 563.2 68.7 516 159-685 365-918 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.4E-61 1.2E-65 539.0 62.1 464 162-632 404-892 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.8E-59 6.1E-64 536.0 52.1 452 162-633 150-636 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 7.5E-59 1.6E-63 532.6 49.6 498 159-682 81-589 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.7E-58 5.9E-63 515.6 50.5 451 164-633 87-539 (697)
6 PLN03081 pentatricopeptide (PP 100.0 9.9E-56 2.1E-60 494.9 49.6 441 160-620 119-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-27 4.8E-32 278.2 62.8 503 163-682 362-873 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-27 5.3E-32 277.8 61.8 462 170-674 437-899 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 2.6E-22 5.6E-27 200.0 39.8 444 166-632 50-500 (966)
10 PRK11447 cellulose synthase su 99.9 8.2E-20 1.8E-24 215.4 61.2 489 167-674 115-739 (1157)
11 PRK11447 cellulose synthase su 99.9 2.1E-19 4.4E-24 212.0 61.3 499 163-681 61-706 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 7.1E-21 1.5E-25 189.8 33.7 408 173-599 91-502 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-17 3.9E-22 183.6 51.1 430 166-617 129-572 (615)
14 PRK11788 tetratricopeptide rep 99.9 3.5E-19 7.7E-24 187.2 35.8 300 316-623 45-354 (389)
15 PRK09782 bacteriophage N4 rece 99.9 7.2E-17 1.6E-21 182.0 56.2 486 163-683 43-714 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 3.5E-17 7.5E-22 181.4 52.0 415 202-636 129-556 (615)
17 PRK11788 tetratricopeptide rep 99.9 7.5E-19 1.6E-23 184.7 35.4 297 211-516 46-352 (389)
18 PRK15174 Vi polysaccharide exp 99.9 3.9E-17 8.4E-22 180.3 48.6 334 166-512 44-382 (656)
19 PRK10049 pgaA outer membrane p 99.9 2.5E-17 5.4E-22 185.8 47.1 423 159-633 10-471 (765)
20 PRK10049 pgaA outer membrane p 99.9 1.4E-16 3E-21 179.8 52.2 389 197-622 12-426 (765)
21 PRK15174 Vi polysaccharide exp 99.8 8.7E-17 1.9E-21 177.5 47.9 364 173-546 14-381 (656)
22 PRK09782 bacteriophage N4 rece 99.8 2.8E-15 6.1E-20 169.3 54.6 196 410-616 476-672 (987)
23 PRK14574 hmsH outer membrane p 99.8 3.9E-15 8.5E-20 164.7 54.2 453 163-630 33-525 (822)
24 KOG2002 TPR-containing nuclear 99.8 9.7E-16 2.1E-20 161.7 44.8 504 159-678 265-801 (1018)
25 KOG2003 TPR repeat-containing 99.8 7.4E-17 1.6E-21 155.6 28.3 529 66-632 128-704 (840)
26 PRK14574 hmsH outer membrane p 99.8 1.9E-14 4.1E-19 159.3 50.8 414 168-594 72-524 (822)
27 KOG2076 RNA polymerase III tra 99.8 1.2E-13 2.6E-18 145.3 49.2 507 167-681 142-775 (895)
28 KOG2002 TPR-containing nuclear 99.8 1.3E-13 2.9E-18 145.9 46.9 302 166-475 166-480 (1018)
29 KOG4422 Uncharacterized conser 99.7 6.6E-14 1.4E-18 134.8 38.7 362 233-618 205-592 (625)
30 KOG4422 Uncharacterized conser 99.7 1.2E-13 2.7E-18 132.9 40.0 428 171-641 122-577 (625)
31 KOG0495 HAT repeat protein [RN 99.7 4.3E-11 9.4E-16 121.5 48.9 428 176-622 388-850 (913)
32 KOG0495 HAT repeat protein [RN 99.7 5.4E-11 1.2E-15 120.9 48.8 475 180-681 362-852 (913)
33 KOG2003 TPR repeat-containing 99.6 8.6E-13 1.9E-17 127.9 31.4 431 170-612 243-718 (840)
34 COG2956 Predicted N-acetylgluc 99.6 1.9E-12 4.2E-17 120.8 28.9 310 354-671 48-370 (389)
35 KOG1155 Anaphase-promoting com 99.6 8.5E-11 1.8E-15 115.1 40.4 364 233-615 162-535 (559)
36 KOG2076 RNA polymerase III tra 99.6 4.2E-11 9.1E-16 126.5 40.5 327 209-542 148-508 (895)
37 KOG1915 Cell cycle control pro 99.6 1E-09 2.2E-14 107.8 45.6 453 162-630 71-548 (677)
38 KOG1155 Anaphase-promoting com 99.6 2E-10 4.4E-15 112.5 38.6 379 199-616 163-553 (559)
39 TIGR00540 hemY_coli hemY prote 99.5 2.6E-11 5.5E-16 127.2 34.4 295 282-615 96-398 (409)
40 TIGR00540 hemY_coli hemY prote 99.5 2.2E-11 4.8E-16 127.7 33.8 295 245-580 94-398 (409)
41 KOG0547 Translocase of outer m 99.5 2E-10 4.3E-15 113.2 37.2 423 169-616 120-566 (606)
42 PF13429 TPR_15: Tetratricopep 99.5 5.1E-14 1.1E-18 140.2 12.2 262 346-615 13-276 (280)
43 PRK10747 putative protoheme IX 99.5 6E-11 1.3E-15 123.7 34.6 292 283-615 97-389 (398)
44 PRK10747 putative protoheme IX 99.5 1.8E-10 3.9E-15 120.2 38.1 291 248-580 97-389 (398)
45 KOG1126 DNA-binding cell divis 99.5 8.9E-12 1.9E-16 127.6 27.0 282 322-617 335-621 (638)
46 KOG1915 Cell cycle control pro 99.5 2.3E-08 4.9E-13 98.5 48.2 437 163-616 106-585 (677)
47 PF13429 TPR_15: Tetratricopep 99.5 1E-13 2.2E-18 138.0 12.0 261 311-580 13-276 (280)
48 KOG1126 DNA-binding cell divis 99.5 1.8E-11 3.9E-16 125.4 26.4 283 216-512 335-621 (638)
49 COG2956 Predicted N-acetylgluc 99.5 3.7E-10 8.1E-15 105.7 32.1 233 273-511 39-278 (389)
50 KOG1173 Anaphase-promoting com 99.5 1.4E-09 3.1E-14 109.4 37.6 456 161-631 13-531 (611)
51 KOG1174 Anaphase-promoting com 99.5 2.5E-08 5.4E-13 96.6 43.7 445 169-636 48-518 (564)
52 KOG2047 mRNA splicing factor [ 99.4 6.4E-08 1.4E-12 98.9 47.8 435 165-614 103-613 (835)
53 KOG1156 N-terminal acetyltrans 99.4 2.9E-08 6.3E-13 101.7 44.7 431 171-618 14-470 (700)
54 COG3071 HemY Uncharacterized e 99.4 1.8E-09 3.9E-14 104.5 33.8 294 248-581 97-390 (400)
55 KOG0547 Translocase of outer m 99.4 7.8E-10 1.7E-14 109.1 31.7 412 203-674 118-565 (606)
56 COG3071 HemY Uncharacterized e 99.4 4.8E-09 1E-13 101.6 36.4 294 206-511 88-390 (400)
57 KOG1129 TPR repeat-containing 99.3 6.9E-11 1.5E-15 110.4 18.1 231 167-405 226-458 (478)
58 KOG1156 N-terminal acetyltrans 99.3 1.1E-07 2.5E-12 97.5 41.5 424 171-613 48-508 (700)
59 PF12569 NARP1: NMDA receptor- 99.3 4.3E-08 9.3E-13 103.3 39.2 431 165-612 5-516 (517)
60 KOG2047 mRNA splicing factor [ 99.3 1.3E-06 2.9E-11 89.6 46.8 437 162-629 167-662 (835)
61 PRK12370 invasion protein regu 99.3 1.3E-09 2.9E-14 118.8 27.3 215 180-403 277-500 (553)
62 KOG4162 Predicted calmodulin-b 99.3 1.9E-07 4.1E-12 97.8 40.9 435 171-616 291-783 (799)
63 PF12569 NARP1: NMDA receptor- 99.3 1.8E-08 4E-13 106.1 34.3 128 485-614 197-332 (517)
64 KOG1173 Anaphase-promoting com 99.3 1.4E-08 3.1E-13 102.4 31.5 287 302-597 240-532 (611)
65 KOG1129 TPR repeat-containing 99.3 1.9E-09 4.1E-14 101.0 22.8 230 309-546 226-458 (478)
66 KOG4162 Predicted calmodulin-b 99.3 1.4E-07 3E-12 98.8 38.1 407 163-581 322-783 (799)
67 KOG3785 Uncharacterized conser 99.3 2.1E-07 4.6E-12 88.4 35.8 426 171-625 29-497 (557)
68 TIGR02521 type_IV_pilW type IV 99.3 5.1E-09 1.1E-13 101.2 26.7 197 202-403 33-230 (234)
69 KOG2376 Signal recognition par 99.3 7.5E-07 1.6E-11 90.6 41.8 228 165-407 13-255 (652)
70 TIGR02521 type_IV_pilW type IV 99.2 5.6E-09 1.2E-13 100.9 26.3 201 164-370 31-232 (234)
71 KOG3785 Uncharacterized conser 99.2 2.3E-07 4.9E-12 88.3 35.0 400 168-591 61-498 (557)
72 PRK12370 invasion protein regu 99.2 1.4E-08 3E-13 110.8 31.3 181 357-543 277-467 (553)
73 KOG4318 Bicoid mRNA stability 99.2 4.9E-09 1.1E-13 110.6 25.8 249 259-532 14-286 (1088)
74 KOG4318 Bicoid mRNA stability 99.2 9.4E-10 2E-14 115.8 19.1 91 292-394 11-101 (1088)
75 KOG1840 Kinesin light chain [C 99.2 4.1E-08 8.9E-13 102.2 29.1 248 338-614 196-477 (508)
76 PF13041 PPR_2: PPR repeat fam 99.1 1.3E-10 2.8E-15 81.2 6.8 50 339-388 1-50 (50)
77 PF13041 PPR_2: PPR repeat fam 99.1 1E-10 2.2E-15 81.6 6.1 49 550-598 1-49 (50)
78 KOG1840 Kinesin light chain [C 99.1 5E-08 1.1E-12 101.5 26.8 244 306-579 199-477 (508)
79 KOG2376 Signal recognition par 99.1 2.9E-06 6.3E-11 86.5 35.9 425 162-613 44-517 (652)
80 KOG1174 Anaphase-promoting com 99.0 1.2E-05 2.6E-10 78.5 37.8 403 163-586 96-503 (564)
81 KOG4340 Uncharacterized conser 99.0 2.2E-06 4.9E-11 79.8 29.9 294 163-471 9-334 (459)
82 PRK11189 lipoprotein NlpI; Pro 99.0 5.3E-07 1.1E-11 90.1 27.8 219 177-406 39-266 (296)
83 KOG0624 dsRNA-activated protei 99.0 1.7E-05 3.6E-10 75.6 34.6 187 424-617 168-371 (504)
84 PRK11189 lipoprotein NlpI; Pro 98.9 5.3E-07 1.2E-11 90.0 26.1 203 165-379 65-273 (296)
85 COG3063 PilF Tfp pilus assembl 98.9 6.8E-07 1.5E-11 80.6 23.4 199 165-369 36-235 (250)
86 cd05804 StaR_like StaR_like; a 98.9 6.5E-06 1.4E-10 85.3 34.7 200 201-405 7-215 (355)
87 KOG1127 TPR repeat-containing 98.9 4.3E-06 9.4E-11 90.0 32.8 186 178-369 472-658 (1238)
88 cd05804 StaR_like StaR_like; a 98.9 8.1E-06 1.8E-10 84.6 34.4 201 164-370 6-215 (355)
89 PRK04841 transcriptional regul 98.9 8.6E-06 1.9E-10 95.8 38.6 336 280-617 384-761 (903)
90 KOG0624 dsRNA-activated protei 98.9 2.6E-05 5.5E-10 74.4 33.4 331 163-547 37-371 (504)
91 COG3063 PilF Tfp pilus assembl 98.9 1.5E-06 3.3E-11 78.4 24.1 185 237-427 37-223 (250)
92 KOG0548 Molecular co-chaperone 98.9 5E-05 1.1E-09 77.1 37.0 400 171-598 9-470 (539)
93 KOG4340 Uncharacterized conser 98.9 4E-06 8.6E-11 78.2 26.5 196 203-408 13-210 (459)
94 PRK04841 transcriptional regul 98.9 2.2E-05 4.8E-10 92.3 39.4 193 210-403 384-600 (903)
95 KOG0548 Molecular co-chaperone 98.8 1.8E-05 3.8E-10 80.3 31.7 405 207-634 9-472 (539)
96 KOG3617 WD40 and TPR repeat-co 98.8 1.4E-05 2.9E-10 84.4 30.9 381 199-674 725-1132(1416)
97 KOG1914 mRNA cleavage and poly 98.8 0.00031 6.8E-09 71.3 39.4 187 428-616 309-501 (656)
98 KOG3617 WD40 and TPR repeat-co 98.8 5.6E-05 1.2E-09 79.9 34.0 250 173-474 737-994 (1416)
99 KOG0985 Vesicle coat protein c 98.8 0.00012 2.7E-09 79.1 36.4 343 163-565 983-1326(1666)
100 PLN02789 farnesyltranstransfer 98.7 1E-05 2.2E-10 80.8 25.7 212 169-388 42-267 (320)
101 KOG1125 TPR repeat-containing 98.7 2.7E-06 5.9E-11 86.7 21.4 217 351-579 295-525 (579)
102 PF04733 Coatomer_E: Coatomer 98.7 6.1E-07 1.3E-11 88.3 16.1 253 352-623 12-270 (290)
103 KOG1125 TPR repeat-containing 98.7 1.4E-05 2.9E-10 81.7 24.8 237 156-404 277-526 (579)
104 KOG3616 Selective LIM binding 98.7 0.00018 4E-09 75.1 33.0 373 169-612 737-1130(1636)
105 KOG3616 Selective LIM binding 98.6 0.0001 2.2E-09 77.0 30.0 326 204-579 561-909 (1636)
106 KOG2053 Mitochondrial inherita 98.6 0.0018 3.8E-08 70.1 46.5 429 171-615 16-535 (932)
107 PF04733 Coatomer_E: Coatomer 98.6 3.9E-06 8.4E-11 82.7 18.8 253 315-586 10-268 (290)
108 KOG1070 rRNA processing protei 98.6 2.9E-05 6.4E-10 86.7 26.6 228 163-395 1457-1690(1710)
109 KOG1128 Uncharacterized conser 98.6 2.6E-05 5.6E-10 81.8 24.3 239 338-598 395-634 (777)
110 PLN02789 farnesyltranstransfer 98.6 5.8E-05 1.3E-09 75.4 26.3 206 212-423 49-267 (320)
111 KOG1127 TPR repeat-containing 98.6 0.00066 1.4E-08 73.9 35.1 249 429-682 800-1074(1238)
112 KOG3081 Vesicle coat complex C 98.5 4.5E-05 9.7E-10 70.5 22.6 249 351-616 18-271 (299)
113 PRK15179 Vi polysaccharide bio 98.5 4.9E-05 1.1E-09 83.7 27.1 131 446-580 85-216 (694)
114 KOG0985 Vesicle coat protein c 98.5 0.0017 3.6E-08 70.8 36.7 357 194-612 978-1337(1666)
115 PRK10370 formate-dependent nit 98.5 3.3E-05 7.2E-10 71.8 21.5 158 454-628 23-184 (198)
116 KOG1128 Uncharacterized conser 98.5 3.3E-05 7.1E-10 81.1 22.9 230 380-631 402-632 (777)
117 COG5010 TadD Flp pilus assembl 98.5 2.1E-05 4.5E-10 72.8 18.9 159 451-613 70-228 (257)
118 KOG3081 Vesicle coat complex C 98.5 0.00018 3.9E-09 66.7 24.7 255 169-442 13-272 (299)
119 TIGR03302 OM_YfiO outer membra 98.5 2.9E-05 6.3E-10 75.1 21.3 168 447-616 33-232 (235)
120 PF12854 PPR_1: PPR repeat 98.5 2.5E-07 5.3E-12 57.9 4.1 32 336-367 2-33 (34)
121 TIGR03302 OM_YfiO outer membra 98.5 2.4E-05 5.2E-10 75.7 20.2 101 163-264 32-144 (235)
122 COG5010 TadD Flp pilus assembl 98.5 3.7E-05 8.1E-10 71.2 19.9 160 204-368 70-229 (257)
123 KOG1070 rRNA processing protei 98.4 0.00014 3E-09 81.6 26.8 216 187-409 1447-1667(1710)
124 PF12854 PPR_1: PPR repeat 98.4 2.5E-07 5.3E-12 57.9 3.5 31 548-578 3-33 (34)
125 PRK15359 type III secretion sy 98.3 2.5E-05 5.4E-10 68.6 15.5 91 523-615 30-120 (144)
126 PRK14720 transcript cleavage f 98.3 0.00023 5.1E-09 79.2 25.8 238 339-633 29-268 (906)
127 TIGR02552 LcrH_SycD type III s 98.3 2.7E-05 5.8E-10 67.9 15.1 121 504-629 5-125 (135)
128 PRK15359 type III secretion sy 98.3 5.9E-05 1.3E-09 66.2 17.1 90 489-580 31-120 (144)
129 PRK15179 Vi polysaccharide bio 98.3 0.00013 2.9E-09 80.3 22.9 161 180-348 68-229 (694)
130 PRK14720 transcript cleavage f 98.3 0.00041 8.9E-09 77.3 26.1 152 306-493 116-268 (906)
131 PRK10370 formate-dependent nit 98.2 5.2E-05 1.1E-09 70.4 16.1 124 460-587 52-178 (198)
132 KOG1914 mRNA cleavage and poly 98.2 0.01 2.2E-07 60.9 39.1 413 160-580 16-500 (656)
133 COG4783 Putative Zn-dependent 98.2 0.00076 1.7E-08 68.1 23.0 146 202-370 308-454 (484)
134 KOG3060 Uncharacterized conser 98.1 0.001 2.2E-08 61.3 21.5 187 355-546 26-220 (289)
135 COG4783 Putative Zn-dependent 98.1 0.0016 3.4E-08 66.0 24.5 239 278-546 210-454 (484)
136 KOG3060 Uncharacterized conser 98.1 0.0014 3.1E-08 60.4 21.9 122 209-334 61-182 (289)
137 TIGR02552 LcrH_SycD type III s 98.1 0.00015 3.2E-09 63.1 15.1 103 483-589 18-120 (135)
138 PF09976 TPR_21: Tetratricopep 98.0 0.00037 8E-09 61.4 15.4 117 494-613 23-144 (145)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00055 1.2E-08 69.9 17.1 127 236-369 170-296 (395)
140 TIGR00756 PPR pentatricopeptid 97.9 2.3E-05 4.9E-10 49.7 4.0 33 554-586 2-34 (35)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00047 1E-08 70.3 15.4 124 450-579 172-295 (395)
142 TIGR00756 PPR pentatricopeptid 97.8 5E-05 1.1E-09 48.0 4.6 33 343-375 2-34 (35)
143 PF13812 PPR_3: Pentatricopept 97.8 4.3E-05 9.4E-10 48.0 4.1 33 236-268 2-34 (34)
144 PF13812 PPR_3: Pentatricopept 97.7 4.7E-05 1E-09 47.9 4.0 32 554-585 3-34 (34)
145 KOG2053 Mitochondrial inherita 97.7 0.12 2.6E-06 56.6 43.1 198 171-373 50-258 (932)
146 PF09976 TPR_21: Tetratricopep 97.7 0.0021 4.6E-08 56.6 15.8 126 449-578 14-144 (145)
147 cd00189 TPR Tetratricopeptide 97.7 0.00068 1.5E-08 54.1 11.7 95 520-616 3-97 (100)
148 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0011 2.3E-08 56.1 12.9 100 165-264 3-105 (119)
149 PLN03088 SGT1, suppressor of 97.6 0.00083 1.8E-08 68.8 13.8 107 167-278 5-111 (356)
150 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0014 3E-08 55.4 12.8 97 519-617 4-106 (119)
151 PF10037 MRP-S27: Mitochondria 97.6 0.0007 1.5E-08 69.4 12.6 124 477-600 61-186 (429)
152 PRK10153 DNA-binding transcrip 97.6 0.004 8.6E-08 66.7 18.8 149 478-631 333-495 (517)
153 PF10037 MRP-S27: Mitochondria 97.6 0.00087 1.9E-08 68.7 13.0 123 443-565 62-186 (429)
154 KOG0553 TPR repeat-containing 97.6 0.00079 1.7E-08 63.9 11.5 95 492-590 91-185 (304)
155 PLN03088 SGT1, suppressor of 97.6 0.0017 3.7E-08 66.5 15.2 88 526-616 11-99 (356)
156 PRK15363 pathogenicity island 97.6 0.00092 2E-08 57.9 11.0 99 163-264 34-132 (157)
157 PRK15363 pathogenicity island 97.6 0.0019 4.2E-08 55.9 12.9 98 517-616 35-132 (157)
158 KOG0550 Molecular chaperone (D 97.6 0.045 9.7E-07 54.5 23.3 307 314-652 57-383 (486)
159 PF12895 Apc3: Anaphase-promot 97.5 0.00017 3.6E-09 56.7 5.4 82 177-260 2-83 (84)
160 cd00189 TPR Tetratricopeptide 97.5 0.0015 3.3E-08 52.0 11.3 90 488-579 6-95 (100)
161 PRK10866 outer membrane biogen 97.5 0.025 5.4E-07 54.4 20.4 56 347-402 181-238 (243)
162 PF08579 RPM2: Mitochondrial r 97.4 0.0024 5.2E-08 51.3 10.5 74 313-386 32-114 (120)
163 PF08579 RPM2: Mitochondrial r 97.4 0.0041 9E-08 49.9 11.6 80 237-316 27-114 (120)
164 KOG2041 WD40 repeat protein [G 97.4 0.23 4.9E-06 52.8 27.1 170 198-399 690-875 (1189)
165 PF05843 Suf: Suppressor of fo 97.4 0.0041 8.9E-08 61.4 14.5 130 237-369 3-135 (280)
166 PF01535 PPR: PPR repeat; Int 97.4 0.00014 3.1E-09 44.4 2.7 29 554-582 2-30 (31)
167 PF01535 PPR: PPR repeat; Int 97.4 0.0002 4.3E-09 43.8 3.1 29 343-371 2-30 (31)
168 PF12895 Apc3: Anaphase-promot 97.4 0.00038 8.3E-09 54.6 5.5 80 530-612 2-83 (84)
169 PRK10866 outer membrane biogen 97.4 0.032 7E-07 53.6 19.6 54 382-436 181-236 (243)
170 PRK02603 photosystem I assembl 97.3 0.018 3.9E-07 52.4 17.1 90 447-537 35-126 (172)
171 KOG0553 TPR repeat-containing 97.3 0.014 3E-07 55.7 16.1 129 455-587 89-221 (304)
172 PF06239 ECSIT: Evolutionarily 97.3 0.0058 1.2E-07 55.6 13.0 73 355-427 66-154 (228)
173 COG4235 Cytochrome c biogenesi 97.3 0.013 2.7E-07 56.3 15.7 101 514-617 153-257 (287)
174 CHL00033 ycf3 photosystem I as 97.3 0.0043 9.3E-08 56.2 12.2 59 521-579 39-99 (168)
175 PRK02603 photosystem I assembl 97.3 0.011 2.4E-07 53.7 14.9 124 483-632 36-161 (172)
176 PF06239 ECSIT: Evolutionarily 97.3 0.0041 8.8E-08 56.6 11.3 37 356-392 118-154 (228)
177 PF12688 TPR_5: Tetratrico pep 97.3 0.008 1.7E-07 50.3 12.4 109 167-280 4-116 (120)
178 PF05843 Suf: Suppressor of fo 97.3 0.0087 1.9E-07 59.1 15.0 131 271-405 2-136 (280)
179 PF07079 DUF1347: Protein of u 97.2 0.31 6.6E-06 49.4 42.1 440 171-626 13-529 (549)
180 COG4700 Uncharacterized protei 97.2 0.098 2.1E-06 46.2 18.7 136 478-615 85-221 (251)
181 CHL00033 ycf3 photosystem I as 97.2 0.011 2.4E-07 53.5 13.8 64 448-511 36-101 (168)
182 KOG1130 Predicted G-alpha GTPa 97.2 0.013 2.9E-07 57.8 14.6 114 171-285 24-150 (639)
183 KOG2041 WD40 repeat protein [G 97.1 0.24 5.2E-06 52.6 24.1 31 233-263 690-720 (1189)
184 COG4700 Uncharacterized protei 97.1 0.054 1.2E-06 47.8 16.5 117 513-633 85-204 (251)
185 PRK10153 DNA-binding transcrip 97.0 0.033 7.1E-07 59.8 17.5 64 234-300 419-482 (517)
186 KOG2796 Uncharacterized conser 97.0 0.29 6.3E-06 45.8 20.8 62 237-299 179-240 (366)
187 KOG1130 Predicted G-alpha GTPa 97.0 0.005 1.1E-07 60.7 9.8 286 314-616 25-344 (639)
188 PF14938 SNAP: Soluble NSF att 97.0 0.044 9.5E-07 54.4 16.8 27 165-191 36-62 (282)
189 PF14559 TPR_19: Tetratricopep 96.9 0.0019 4.2E-08 48.2 5.4 52 175-228 2-53 (68)
190 PF04840 Vps16_C: Vps16, C-ter 96.9 0.53 1.1E-05 47.2 30.3 109 449-577 179-287 (319)
191 PRK10803 tol-pal system protei 96.9 0.029 6.3E-07 54.4 14.6 106 518-627 144-255 (263)
192 PF12688 TPR_5: Tetratrico pep 96.9 0.054 1.2E-06 45.3 14.2 90 454-543 8-101 (120)
193 PF14559 TPR_19: Tetratricopep 96.9 0.0029 6.3E-08 47.2 6.2 65 211-278 2-66 (68)
194 PF14938 SNAP: Soluble NSF att 96.9 0.031 6.7E-07 55.5 15.1 159 455-616 43-225 (282)
195 PF13525 YfiO: Outer membrane 96.9 0.096 2.1E-06 49.0 17.3 66 163-228 4-70 (203)
196 PF13414 TPR_11: TPR repeat; P 96.9 0.0043 9.3E-08 46.4 6.8 63 551-615 2-66 (69)
197 KOG2280 Vacuolar assembly/sort 96.9 0.95 2.1E-05 48.9 26.9 336 264-634 426-789 (829)
198 KOG2796 Uncharacterized conser 96.8 0.24 5.1E-06 46.4 18.3 130 274-405 181-315 (366)
199 PF13432 TPR_16: Tetratricopep 96.8 0.0043 9.3E-08 45.7 6.2 54 209-263 6-59 (65)
200 PF13432 TPR_16: Tetratricopep 96.7 0.0059 1.3E-07 45.0 6.5 55 559-615 4-59 (65)
201 PF13414 TPR_11: TPR repeat; P 96.7 0.007 1.5E-07 45.2 6.9 63 517-580 3-66 (69)
202 KOG0550 Molecular chaperone (D 96.7 0.8 1.7E-05 46.0 23.7 283 164-475 49-349 (486)
203 COG3118 Thioredoxin domain-con 96.7 0.084 1.8E-06 50.5 15.1 153 163-320 133-286 (304)
204 PF13525 YfiO: Outer membrane 96.7 0.57 1.2E-05 43.8 21.0 60 311-370 10-71 (203)
205 COG3898 Uncharacterized membra 96.6 0.85 1.8E-05 45.4 29.4 196 429-635 171-375 (531)
206 PRK10803 tol-pal system protei 96.6 0.038 8.3E-07 53.6 12.9 101 169-271 148-251 (263)
207 COG4235 Cytochrome c biogenesi 96.6 0.11 2.3E-06 50.1 15.2 100 480-581 154-256 (287)
208 KOG1538 Uncharacterized conser 96.5 0.35 7.5E-06 51.0 19.5 92 305-401 555-657 (1081)
209 KOG2280 Vacuolar assembly/sort 96.5 1.6 3.4E-05 47.4 26.2 349 228-612 425-795 (829)
210 PF04840 Vps16_C: Vps16, C-ter 96.5 1 2.3E-05 45.1 28.9 106 416-542 182-287 (319)
211 PF13371 TPR_9: Tetratricopept 96.4 0.017 3.6E-07 43.7 7.6 63 560-625 3-65 (73)
212 PF13281 DUF4071: Domain of un 96.4 0.54 1.2E-05 47.6 19.9 88 194-281 135-228 (374)
213 PF03704 BTAD: Bacterial trans 96.3 0.037 8.1E-07 48.7 9.8 71 555-626 65-140 (146)
214 KOG1538 Uncharacterized conser 96.2 0.99 2.1E-05 47.8 20.7 82 429-545 764-845 (1081)
215 PRK15331 chaperone protein Sic 96.2 0.31 6.7E-06 42.8 14.6 92 523-616 43-134 (165)
216 KOG2114 Vacuolar assembly/sort 96.2 2.6 5.6E-05 46.4 24.2 183 160-367 330-516 (933)
217 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.08 1.7E-06 54.2 12.7 67 162-228 73-140 (453)
218 PF04184 ST7: ST7 protein; In 96.2 0.44 9.4E-06 49.2 17.7 201 459-681 180-381 (539)
219 PRK15331 chaperone protein Sic 96.2 0.089 1.9E-06 46.0 11.1 99 163-264 36-134 (165)
220 COG4105 ComL DNA uptake lipopr 96.2 1.2 2.6E-05 42.1 21.7 189 163-405 33-233 (254)
221 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.8 3.9E-05 44.0 36.2 144 483-632 398-545 (660)
222 PF07079 DUF1347: Protein of u 96.1 1.9 4.1E-05 44.0 39.2 409 170-593 52-531 (549)
223 PF13424 TPR_12: Tetratricopep 96.1 0.0093 2E-07 45.9 4.6 63 553-615 6-74 (78)
224 PF03704 BTAD: Bacterial trans 96.1 0.055 1.2E-06 47.6 10.1 71 519-590 64-139 (146)
225 COG3898 Uncharacterized membra 96.1 1.8 3.9E-05 43.2 34.9 293 202-511 84-392 (531)
226 PF13371 TPR_9: Tetratricopept 95.9 0.041 8.8E-07 41.5 7.4 56 525-581 3-58 (73)
227 PF13281 DUF4071: Domain of un 95.7 2.7 5.9E-05 42.7 23.4 98 306-403 141-253 (374)
228 PF13424 TPR_12: Tetratricopep 95.7 0.019 4E-07 44.2 4.7 64 517-580 5-74 (78)
229 PF13512 TPR_18: Tetratricopep 95.7 0.17 3.6E-06 43.3 10.5 70 161-230 7-77 (142)
230 KOG1585 Protein required for f 95.6 1.2 2.7E-05 41.4 16.4 206 166-399 33-250 (308)
231 PF12921 ATP13: Mitochondrial 95.6 0.28 6.1E-06 41.5 11.8 98 516-633 1-99 (126)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.14 3E-06 52.6 11.5 64 481-545 74-140 (453)
233 KOG2114 Vacuolar assembly/sort 95.6 3 6.5E-05 45.9 21.5 148 165-332 369-516 (933)
234 PF12921 ATP13: Mitochondrial 95.5 0.33 7.2E-06 41.1 11.8 82 482-563 2-99 (126)
235 COG1729 Uncharacterized protei 95.5 0.27 5.8E-06 46.8 12.1 103 167-271 144-249 (262)
236 KOG2610 Uncharacterized conser 95.2 0.43 9.3E-06 46.3 12.7 95 446-542 136-234 (491)
237 KOG3941 Intermediate in Toll s 95.2 0.17 3.7E-06 47.8 9.8 48 287-334 139-187 (406)
238 KOG0543 FKBP-type peptidyl-pro 95.2 0.88 1.9E-05 45.8 15.2 97 235-334 257-354 (397)
239 COG5107 RNA14 Pre-mRNA 3'-end 95.1 4.5 9.8E-05 41.3 31.1 131 412-546 398-531 (660)
240 PF04184 ST7: ST7 protein; In 95.0 1.7 3.7E-05 45.0 16.9 163 241-418 174-338 (539)
241 PRK11906 transcriptional regul 95.0 1.9 4E-05 44.6 17.3 115 463-579 274-399 (458)
242 PF10300 DUF3808: Protein of u 95.0 1.3 2.9E-05 47.3 17.2 165 237-404 190-375 (468)
243 COG3118 Thioredoxin domain-con 94.9 3.3 7.2E-05 40.0 17.7 141 490-634 142-284 (304)
244 KOG0543 FKBP-type peptidyl-pro 94.9 0.45 9.7E-06 47.8 12.4 95 519-616 259-355 (397)
245 KOG1258 mRNA processing protei 94.9 6.4 0.00014 41.9 36.0 410 201-632 46-485 (577)
246 PF09205 DUF1955: Domain of un 94.9 2 4.3E-05 36.0 15.4 139 458-618 13-151 (161)
247 KOG4555 TPR repeat-containing 94.9 0.96 2.1E-05 37.6 12.0 93 171-265 50-145 (175)
248 PF10300 DUF3808: Protein of u 94.8 1.4 3.1E-05 47.0 16.9 162 450-614 191-374 (468)
249 COG0457 NrfG FOG: TPR repeat [ 94.7 3.7 8E-05 38.5 27.1 190 178-369 37-230 (291)
250 KOG3941 Intermediate in Toll s 94.6 0.61 1.3E-05 44.2 11.7 78 356-433 87-180 (406)
251 PF07035 Mic1: Colon cancer-as 94.5 2.7 6E-05 37.3 15.1 134 256-404 15-148 (167)
252 KOG4555 TPR repeat-containing 94.5 0.9 2E-05 37.8 11.0 92 455-547 51-145 (175)
253 KOG2066 Vacuolar assembly/sort 94.4 9.9 0.00022 41.8 26.0 105 171-282 363-467 (846)
254 COG1729 Uncharacterized protei 94.3 0.63 1.4E-05 44.4 11.4 103 519-624 144-250 (262)
255 smart00299 CLH Clathrin heavy 94.0 3.1 6.8E-05 36.0 14.8 122 487-631 12-134 (140)
256 PF09205 DUF1955: Domain of un 93.8 3.5 7.6E-05 34.6 13.6 64 519-583 88-151 (161)
257 PF04053 Coatomer_WDAD: Coatom 93.8 1.7 3.6E-05 45.8 14.5 163 169-367 266-428 (443)
258 COG4649 Uncharacterized protei 93.8 4.5 9.8E-05 35.7 14.5 135 234-370 58-196 (221)
259 PRK11906 transcriptional regul 93.7 6.1 0.00013 41.0 17.8 146 429-577 275-432 (458)
260 KOG2396 HAT (Half-A-TPR) repea 93.7 10 0.00022 39.5 37.1 92 218-312 89-180 (568)
261 PF13170 DUF4003: Protein of u 93.6 8.3 0.00018 38.2 19.5 131 358-488 79-223 (297)
262 KOG1258 mRNA processing protei 93.6 12 0.00026 40.0 33.3 396 181-601 62-489 (577)
263 smart00299 CLH Clathrin heavy 93.6 4.4 9.6E-05 35.0 14.9 84 240-332 12-95 (140)
264 PF04053 Coatomer_WDAD: Coatom 93.4 2.6 5.7E-05 44.4 15.3 132 448-612 296-427 (443)
265 KOG1941 Acetylcholine receptor 93.3 9.5 0.00021 37.9 18.0 58 452-509 127-189 (518)
266 COG2976 Uncharacterized protei 93.3 1.9 4.1E-05 38.9 11.7 90 560-677 97-190 (207)
267 PF08631 SPO22: Meiosis protei 93.3 9.3 0.0002 37.7 25.3 164 449-615 86-274 (278)
268 COG0457 NrfG FOG: TPR repeat [ 93.2 7.4 0.00016 36.3 29.8 168 446-617 94-266 (291)
269 KOG1550 Extracellular protein 93.2 16 0.00034 40.2 27.3 245 322-581 228-504 (552)
270 PF07035 Mic1: Colon cancer-as 93.0 6.3 0.00014 35.1 15.4 134 361-510 14-148 (167)
271 KOG2610 Uncharacterized conser 92.9 3.8 8.2E-05 40.1 13.9 157 244-403 112-274 (491)
272 KOG1920 IkappaB kinase complex 92.9 22 0.00048 41.2 27.5 65 164-228 677-744 (1265)
273 PF09613 HrpB1_HrpK: Bacterial 92.7 6.3 0.00014 34.6 13.9 109 518-632 8-120 (160)
274 PF13428 TPR_14: Tetratricopep 92.7 0.26 5.7E-06 32.7 4.4 32 166-197 3-34 (44)
275 KOG1464 COP9 signalosome, subu 92.4 9.7 0.00021 36.2 15.5 195 462-676 42-261 (440)
276 PF10345 Cohesin_load: Cohesin 92.4 22 0.00047 39.8 34.8 165 167-332 62-251 (608)
277 COG3629 DnrI DNA-binding trans 92.3 1.6 3.6E-05 42.3 10.9 60 519-579 155-214 (280)
278 PF13428 TPR_14: Tetratricopep 92.1 0.44 9.6E-06 31.6 5.0 27 520-546 4-30 (44)
279 KOG4234 TPR repeat-containing 91.9 3.7 8E-05 37.2 11.6 140 526-670 104-249 (271)
280 PF09613 HrpB1_HrpK: Bacterial 91.8 6.8 0.00015 34.4 13.0 72 211-285 21-92 (160)
281 PF13512 TPR_18: Tetratricopep 91.6 5.3 0.00011 34.3 12.0 75 489-563 17-93 (142)
282 COG2976 Uncharacterized protei 91.6 2.4 5.2E-05 38.3 10.2 94 169-264 94-188 (207)
283 KOG1920 IkappaB kinase complex 91.5 32 0.0007 40.0 30.6 136 450-613 911-1052(1265)
284 KOG1941 Acetylcholine receptor 91.4 8.4 0.00018 38.3 14.4 230 171-403 13-273 (518)
285 COG4649 Uncharacterized protei 91.4 9.9 0.00021 33.7 15.0 124 211-335 69-196 (221)
286 PF13176 TPR_7: Tetratricopept 91.1 0.53 1.2E-05 29.6 4.3 26 589-614 1-26 (36)
287 COG4785 NlpI Lipoprotein NlpI, 90.8 13 0.00029 34.2 15.5 186 176-371 77-267 (297)
288 COG4105 ComL DNA uptake lipopr 90.5 16 0.00035 34.7 22.2 55 316-370 44-100 (254)
289 COG3629 DnrI DNA-binding trans 90.2 3.6 7.9E-05 39.9 10.9 77 484-561 155-236 (280)
290 PRK09687 putative lyase; Provi 89.6 22 0.00049 35.0 27.3 136 481-632 141-277 (280)
291 PF10602 RPN7: 26S proteasome 89.6 5.2 0.00011 36.3 11.1 64 235-299 36-101 (177)
292 KOG1550 Extracellular protein 89.5 37 0.0008 37.3 25.9 153 212-371 261-427 (552)
293 KOG1585 Protein required for f 89.3 20 0.00042 33.9 17.2 57 554-611 192-251 (308)
294 PF04097 Nic96: Nup93/Nic96; 89.0 16 0.00035 40.6 16.5 368 240-632 116-548 (613)
295 PF02259 FAT: FAT domain; Int 89.0 29 0.00063 35.4 20.6 66 515-580 144-212 (352)
296 PF13170 DUF4003: Protein of u 88.9 26 0.00056 34.8 22.1 131 323-455 79-225 (297)
297 COG2909 MalT ATP-dependent tra 88.8 47 0.001 37.5 28.3 89 246-334 426-525 (894)
298 PF13176 TPR_7: Tetratricopept 88.4 1.1 2.4E-05 28.1 4.2 26 237-262 1-26 (36)
299 COG2909 MalT ATP-dependent tra 88.0 52 0.0011 37.2 27.2 223 387-612 426-684 (894)
300 COG4455 ImpE Protein of avirul 88.0 14 0.0003 34.2 12.1 124 555-682 4-141 (273)
301 PF10602 RPN7: 26S proteasome 87.9 6.8 0.00015 35.5 10.6 97 518-614 37-140 (177)
302 KOG0276 Vesicle coat complex C 87.9 7.4 0.00016 41.3 11.8 45 212-262 649-693 (794)
303 PF00515 TPR_1: Tetratricopept 87.9 1.4 3E-05 27.0 4.4 28 588-615 2-29 (34)
304 KOG1464 COP9 signalosome, subu 87.9 26 0.00056 33.5 23.5 268 355-632 41-347 (440)
305 PF13431 TPR_17: Tetratricopep 87.7 0.6 1.3E-05 28.9 2.5 20 552-571 13-32 (34)
306 COG4785 NlpI Lipoprotein NlpI, 87.7 23 0.0005 32.7 15.4 163 233-406 97-267 (297)
307 PF07719 TPR_2: Tetratricopept 87.6 1.4 3.1E-05 26.8 4.4 28 588-615 2-29 (34)
308 PRK11619 lytic murein transgly 87.5 53 0.0012 36.7 38.2 256 201-474 100-373 (644)
309 TIGR02561 HrpB1_HrpK type III 87.4 14 0.0003 31.9 11.3 51 213-264 23-73 (153)
310 PF06552 TOM20_plant: Plant sp 87.3 2.8 6E-05 37.4 7.3 59 570-632 53-123 (186)
311 PF13431 TPR_17: Tetratricopep 86.8 0.92 2E-05 28.1 3.0 32 505-537 2-33 (34)
312 COG1747 Uncharacterized N-term 86.5 46 0.001 35.0 25.6 63 340-405 65-127 (711)
313 TIGR02561 HrpB1_HrpK type III 86.5 21 0.00045 30.9 12.3 61 168-230 14-74 (153)
314 KOG4234 TPR repeat-containing 86.1 9.6 0.00021 34.6 9.9 91 455-547 103-198 (271)
315 PF06552 TOM20_plant: Plant sp 86.0 14 0.0003 33.2 10.9 76 534-618 52-138 (186)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 85.9 7.1 0.00015 30.8 7.9 62 570-632 25-86 (103)
317 KOG4570 Uncharacterized conser 85.9 3.6 7.8E-05 39.9 7.7 47 216-262 116-162 (418)
318 PF02259 FAT: FAT domain; Int 85.8 44 0.00096 34.1 24.3 65 446-510 145-212 (352)
319 PF04097 Nic96: Nup93/Nic96; 83.7 66 0.0014 35.9 17.7 49 163-213 110-158 (613)
320 PF13374 TPR_10: Tetratricopep 83.6 2.9 6.3E-05 26.8 4.6 28 588-615 3-30 (42)
321 KOG4648 Uncharacterized conser 83.4 5.3 0.00012 39.2 7.8 93 526-622 106-198 (536)
322 KOG2066 Vacuolar assembly/sort 83.3 81 0.0018 35.1 29.8 102 208-318 364-467 (846)
323 PF00515 TPR_1: Tetratricopept 83.3 3.1 6.6E-05 25.4 4.3 29 236-264 2-30 (34)
324 KOG2471 TPR repeat-containing 82.9 21 0.00047 37.1 12.1 105 527-632 250-379 (696)
325 PF07719 TPR_2: Tetratricopept 82.9 3.6 7.8E-05 25.0 4.6 30 166-195 3-32 (34)
326 PF13174 TPR_6: Tetratricopept 82.8 2.4 5.2E-05 25.5 3.7 31 166-196 2-32 (33)
327 PF13374 TPR_10: Tetratricopep 82.1 3.5 7.7E-05 26.4 4.6 29 235-263 2-30 (42)
328 PF13929 mRNA_stabil: mRNA sta 81.9 54 0.0012 32.0 16.9 64 302-365 198-262 (292)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 81.8 11 0.00024 29.8 7.4 46 289-334 25-70 (103)
330 KOG4570 Uncharacterized conser 81.8 11 0.00023 36.8 9.0 103 230-335 59-164 (418)
331 PF08631 SPO22: Meiosis protei 81.7 56 0.0012 32.2 26.2 172 483-673 85-273 (278)
332 PF02284 COX5A: Cytochrome c o 81.3 21 0.00046 28.5 8.9 79 201-280 9-89 (108)
333 COG1747 Uncharacterized N-term 80.4 83 0.0018 33.3 25.8 177 375-561 65-248 (711)
334 PF02284 COX5A: Cytochrome c o 80.3 28 0.00062 27.9 9.8 62 570-632 28-89 (108)
335 PRK09687 putative lyase; Provi 80.2 64 0.0014 31.8 29.6 21 523-544 241-261 (280)
336 PF11207 DUF2989: Protein of u 80.0 26 0.00057 32.1 10.5 72 288-360 123-197 (203)
337 KOG4648 Uncharacterized conser 79.2 6.7 0.00014 38.6 6.9 89 455-546 105-194 (536)
338 PF07575 Nucleopor_Nup85: Nup8 79.2 75 0.0016 35.1 16.2 14 354-367 310-323 (566)
339 PF07575 Nucleopor_Nup85: Nup8 79.0 1.1E+02 0.0023 33.9 17.3 35 598-632 506-540 (566)
340 PF13181 TPR_8: Tetratricopept 78.4 6.2 0.00013 23.9 4.5 28 588-615 2-29 (34)
341 PF11207 DUF2989: Protein of u 77.9 22 0.00047 32.6 9.4 70 430-500 124-196 (203)
342 KOG0890 Protein kinase of the 77.6 2.2E+02 0.0047 36.5 39.5 152 169-330 1388-1542(2382)
343 COG3947 Response regulator con 77.6 73 0.0016 31.0 17.5 58 555-613 282-339 (361)
344 PF14853 Fis1_TPR_C: Fis1 C-te 77.2 16 0.00036 25.3 6.6 42 591-634 5-46 (53)
345 TIGR03504 FimV_Cterm FimV C-te 75.4 6 0.00013 26.2 3.9 26 592-617 4-29 (44)
346 PF13174 TPR_6: Tetratricopept 75.0 5.1 0.00011 24.0 3.4 26 239-264 4-29 (33)
347 PF07163 Pex26: Pex26 protein; 74.6 70 0.0015 31.0 12.0 88 523-610 89-181 (309)
348 PF07721 TPR_4: Tetratricopept 74.0 4.6 0.0001 23.0 2.8 22 590-611 4-25 (26)
349 TIGR02508 type_III_yscG type I 73.7 44 0.00096 26.7 9.5 86 179-273 20-105 (115)
350 KOG0890 Protein kinase of the 73.5 2.7E+02 0.006 35.7 27.1 63 552-617 1670-1732(2382)
351 KOG0276 Vesicle coat complex C 73.3 24 0.00052 37.8 9.4 102 173-297 646-747 (794)
352 PF00637 Clathrin: Region in C 73.1 0.99 2.1E-05 39.3 -0.3 83 524-613 14-96 (143)
353 KOG4507 Uncharacterized conser 72.9 41 0.00089 36.0 10.9 152 409-563 569-721 (886)
354 PF07721 TPR_4: Tetratricopept 72.9 5.1 0.00011 22.8 2.8 17 241-257 7-23 (26)
355 COG4455 ImpE Protein of avirul 72.2 24 0.00051 32.7 8.0 74 311-385 6-81 (273)
356 COG3947 Response regulator con 72.1 1E+02 0.0022 30.1 15.7 54 488-542 285-338 (361)
357 PRK15180 Vi polysaccharide bio 71.3 1.4E+02 0.003 31.3 26.3 89 244-335 332-420 (831)
358 KOG2034 Vacuolar sorting prote 70.9 1.9E+02 0.0042 32.9 28.3 180 165-367 359-556 (911)
359 TIGR03504 FimV_Cterm FimV C-te 70.9 9.6 0.00021 25.2 4.0 24 241-264 5-28 (44)
360 TIGR02508 type_III_yscG type I 70.5 53 0.0012 26.2 8.9 52 349-406 47-98 (115)
361 PF14561 TPR_20: Tetratricopep 70.1 28 0.0006 27.4 7.2 53 163-215 21-73 (90)
362 PF10345 Cohesin_load: Cohesin 69.9 1.9E+02 0.0041 32.3 41.3 198 458-673 372-604 (608)
363 PF08424 NRDE-2: NRDE-2, neces 69.5 1.3E+02 0.0029 30.3 16.9 119 463-583 47-185 (321)
364 PF13181 TPR_8: Tetratricopept 69.2 14 0.0003 22.3 4.5 28 236-263 2-29 (34)
365 PF13929 mRNA_stabil: mRNA sta 69.2 1.2E+02 0.0026 29.7 17.1 65 478-542 198-263 (292)
366 KOG4507 Uncharacterized conser 68.5 16 0.00035 38.8 7.0 137 479-617 568-706 (886)
367 PF09986 DUF2225: Uncharacteri 66.7 89 0.0019 29.4 11.1 68 554-621 120-199 (214)
368 KOG0292 Vesicle coat complex C 65.8 2.5E+02 0.0053 32.1 22.1 177 176-404 605-781 (1202)
369 KOG0991 Replication factor C, 64.2 1.3E+02 0.0028 28.4 14.9 137 454-600 137-285 (333)
370 KOG4077 Cytochrome c oxidase, 64.2 51 0.0011 27.6 7.6 62 570-632 67-128 (149)
371 PF00637 Clathrin: Region in C 64.0 1.4 3E-05 38.4 -1.3 84 312-402 13-96 (143)
372 KOG3807 Predicted membrane pro 61.1 1.8E+02 0.0039 28.9 16.1 53 558-612 281-336 (556)
373 COG0790 FOG: TPR repeat, SEL1 60.9 1.8E+02 0.0038 28.8 22.3 83 176-265 53-143 (292)
374 KOG2063 Vacuolar assembly/sort 59.8 3.3E+02 0.0072 31.6 20.5 117 237-353 506-638 (877)
375 KOG3807 Predicted membrane pro 59.3 1.9E+02 0.0042 28.7 13.9 108 287-405 232-340 (556)
376 KOG2471 TPR repeat-containing 59.0 2.4E+02 0.0053 29.8 13.4 39 559-598 342-380 (696)
377 KOG1586 Protein required for f 58.8 1.7E+02 0.0036 27.8 14.9 27 382-408 160-186 (288)
378 PF14853 Fis1_TPR_C: Fis1 C-te 58.2 32 0.0007 23.9 4.9 33 166-198 3-35 (53)
379 smart00101 14_3_3 14-3-3 homol 58.2 1.5E+02 0.0032 28.5 11.0 58 523-580 7-67 (244)
380 PF07163 Pex26: Pex26 protein; 57.4 1.9E+02 0.0042 28.1 14.1 27 236-262 36-62 (309)
381 PRK13342 recombination factor 57.2 2.6E+02 0.0055 29.5 19.3 47 450-496 230-279 (413)
382 PF00244 14-3-3: 14-3-3 protei 56.2 62 0.0014 30.9 8.3 58 522-579 6-64 (236)
383 KOG4642 Chaperone-dependent E3 55.6 1.9E+02 0.0041 27.5 11.1 119 456-578 19-143 (284)
384 PRK13184 pknD serine/threonine 55.2 4.1E+02 0.009 31.3 27.2 95 166-264 477-581 (932)
385 PF10579 Rapsyn_N: Rapsyn N-te 54.7 35 0.00076 25.9 4.8 46 564-609 18-65 (80)
386 smart00028 TPR Tetratricopepti 54.5 23 0.0005 20.0 3.6 28 589-616 3-30 (34)
387 KOG4642 Chaperone-dependent E3 54.3 1.9E+02 0.0042 27.5 10.5 112 428-543 26-143 (284)
388 KOG1586 Protein required for f 53.3 2.1E+02 0.0044 27.2 16.6 30 597-626 164-193 (288)
389 KOG1114 Tripeptidyl peptidase 53.3 4.2E+02 0.009 30.7 14.6 52 586-637 1230-1282(1304)
390 PHA02875 ankyrin repeat protei 53.2 2.1E+02 0.0045 30.0 12.7 15 570-584 298-312 (413)
391 PF08424 NRDE-2: NRDE-2, neces 52.9 2.6E+02 0.0056 28.2 17.8 123 498-622 47-190 (321)
392 KOG0687 26S proteasome regulat 52.6 2.5E+02 0.0055 28.0 15.8 69 235-303 104-176 (393)
393 PHA02875 ankyrin repeat protei 51.9 2.4E+02 0.0052 29.6 12.9 77 315-399 8-88 (413)
394 cd00280 TRFH Telomeric Repeat 51.6 79 0.0017 28.5 7.3 67 216-285 85-158 (200)
395 PF11848 DUF3368: Domain of un 51.5 61 0.0013 21.9 5.3 32 598-629 13-44 (48)
396 PF12862 Apc5: Anaphase-promot 50.5 71 0.0015 25.2 6.6 24 593-616 47-70 (94)
397 KOG0889 Histone acetyltransfer 50.3 8.2E+02 0.018 33.3 35.1 39 637-677 2918-2956(3550)
398 KOG2396 HAT (Half-A-TPR) repea 49.3 3.6E+02 0.0077 28.8 39.8 414 182-615 89-558 (568)
399 PRK11619 lytic murein transgly 49.3 4.3E+02 0.0094 29.7 40.2 316 169-510 38-374 (644)
400 KOG2422 Uncharacterized conser 49.1 3.8E+02 0.0083 29.1 16.6 123 175-297 249-404 (665)
401 KOG4077 Cytochrome c oxidase, 49.0 1.2E+02 0.0025 25.5 7.4 46 290-335 68-113 (149)
402 PF11848 DUF3368: Domain of un 49.0 63 0.0014 21.8 5.1 33 563-595 13-45 (48)
403 PF11846 DUF3366: Domain of un 48.9 73 0.0016 29.3 7.4 34 583-616 140-173 (193)
404 PF11838 ERAP1_C: ERAP1-like C 48.8 2.7E+02 0.0058 27.9 12.3 82 180-264 146-230 (324)
405 PRK15180 Vi polysaccharide bio 48.7 3.5E+02 0.0076 28.5 36.2 128 169-301 294-421 (831)
406 PF15297 CKAP2_C: Cytoskeleton 48.3 1.6E+02 0.0034 29.8 9.6 64 569-634 120-187 (353)
407 PRK12798 chemotaxis protein; R 47.7 3.5E+02 0.0075 28.2 22.4 158 389-547 125-287 (421)
408 PF14689 SPOB_a: Sensor_kinase 47.5 37 0.00079 24.5 4.0 30 586-615 22-51 (62)
409 KOG2063 Vacuolar assembly/sort 47.4 5.2E+02 0.011 30.1 19.2 32 287-318 607-638 (877)
410 KOG2034 Vacuolar sorting prote 47.4 4.9E+02 0.011 29.9 28.5 87 534-623 610-703 (911)
411 KOG0376 Serine-threonine phosp 47.1 49 0.0011 34.6 6.2 110 169-283 9-118 (476)
412 PF10579 Rapsyn_N: Rapsyn N-te 46.9 63 0.0014 24.6 5.1 44 459-502 18-63 (80)
413 PF04762 IKI3: IKI3 family; I 46.1 2.8E+02 0.0061 32.8 13.0 217 163-402 693-927 (928)
414 KOG0403 Neoplastic transformat 45.6 3.8E+02 0.0082 28.1 18.3 376 204-602 218-631 (645)
415 PF04762 IKI3: IKI3 family; I 45.4 5.9E+02 0.013 30.2 17.2 24 238-261 697-720 (928)
416 PRK07003 DNA polymerase III su 44.6 4E+02 0.0086 30.5 12.9 99 498-621 180-279 (830)
417 COG5159 RPN6 26S proteasome re 44.2 3.2E+02 0.0069 26.7 22.4 194 351-544 13-233 (421)
418 KOG2908 26S proteasome regulat 42.8 3.3E+02 0.007 27.4 10.6 91 518-608 76-178 (380)
419 PF13934 ELYS: Nuclear pore co 42.6 3E+02 0.0066 26.1 11.1 104 202-317 78-183 (226)
420 COG5108 RPO41 Mitochondrial DN 42.6 1.6E+02 0.0035 32.3 9.1 74 487-563 33-114 (1117)
421 PF09670 Cas_Cas02710: CRISPR- 42.0 4.2E+02 0.0091 27.5 12.8 57 454-511 138-198 (379)
422 PRK10941 hypothetical protein; 41.9 2.9E+02 0.0063 27.0 10.5 59 556-616 185-244 (269)
423 KOG2297 Predicted translation 41.6 3.6E+02 0.0078 26.7 16.8 70 529-608 267-342 (412)
424 KOG2297 Predicted translation 41.6 3.6E+02 0.0078 26.7 19.6 18 519-536 323-340 (412)
425 PF14689 SPOB_a: Sensor_kinase 41.6 70 0.0015 23.0 4.7 24 345-368 27-50 (62)
426 PRK10564 maltose regulon perip 41.6 70 0.0015 31.4 6.0 34 591-624 261-294 (303)
427 PF08311 Mad3_BUB1_I: Mad3/BUB 41.0 2.2E+02 0.0048 24.0 9.2 44 570-613 81-125 (126)
428 KOG1308 Hsp70-interacting prot 41.0 24 0.00051 35.1 2.8 91 529-622 126-217 (377)
429 PRK08691 DNA polymerase III su 40.4 5.9E+02 0.013 28.9 13.5 98 498-620 180-278 (709)
430 PF08311 Mad3_BUB1_I: Mad3/BUB 40.0 2.3E+02 0.005 23.9 8.6 44 253-297 81-125 (126)
431 PF09477 Type_III_YscG: Bacter 39.6 2.1E+02 0.0046 23.4 10.4 81 177-265 19-99 (116)
432 PRK10941 hypothetical protein; 39.2 3.8E+02 0.0082 26.2 11.2 60 520-580 184-243 (269)
433 PF11663 Toxin_YhaV: Toxin wit 38.9 32 0.00068 29.2 2.8 33 245-279 105-137 (140)
434 COG0735 Fur Fe2+/Zn2+ uptake r 38.5 1.2E+02 0.0026 26.4 6.6 61 435-496 9-69 (145)
435 KOG3364 Membrane protein invol 37.9 2.6E+02 0.0057 24.0 11.2 87 549-638 29-120 (149)
436 COG0735 Fur Fe2+/Zn2+ uptake r 37.9 1.3E+02 0.0028 26.2 6.7 62 328-390 8-69 (145)
437 KOG1839 Uncharacterized protei 37.3 7.2E+02 0.016 30.1 14.0 146 514-659 970-1137(1236)
438 PF10366 Vps39_1: Vacuolar sor 37.2 1.7E+02 0.0038 23.9 7.0 26 555-580 42-67 (108)
439 PF12862 Apc5: Anaphase-promot 37.1 1.2E+02 0.0025 24.0 5.9 53 528-580 9-69 (94)
440 PF09670 Cas_Cas02710: CRISPR- 37.1 5E+02 0.011 27.0 12.3 57 417-476 138-198 (379)
441 PRK10564 maltose regulon perip 36.8 55 0.0012 32.1 4.5 29 520-548 260-288 (303)
442 PF11846 DUF3366: Domain of un 36.3 1.6E+02 0.0034 27.0 7.6 32 373-404 141-172 (193)
443 COG2178 Predicted RNA-binding 36.1 3.5E+02 0.0075 24.9 10.3 16 564-579 133-148 (204)
444 PF11663 Toxin_YhaV: Toxin wit 34.9 49 0.0011 28.1 3.3 31 564-596 107-137 (140)
445 cd08780 Death_TRADD Death Doma 34.3 1.3E+02 0.0029 23.3 5.3 57 163-222 31-87 (90)
446 KOG4521 Nuclear pore complex, 33.8 9E+02 0.02 29.0 13.9 156 456-617 929-1133(1480)
447 KOG0128 RNA-binding protein SA 33.8 7.7E+02 0.017 28.2 36.7 88 498-586 442-531 (881)
448 COG5187 RPN7 26S proteasome re 33.5 4.8E+02 0.01 25.7 15.2 99 375-475 114-220 (412)
449 PF04190 DUF410: Protein of un 33.3 4.6E+02 0.01 25.5 18.7 26 304-329 88-113 (260)
450 KOG1524 WD40 repeat-containing 33.2 3.8E+02 0.0082 28.7 9.9 62 160-228 569-630 (737)
451 KOG1308 Hsp70-interacting prot 33.0 46 0.00099 33.2 3.3 89 175-266 125-213 (377)
452 cd00280 TRFH Telomeric Repeat 32.4 2.8E+02 0.0061 25.2 7.7 23 382-404 117-139 (200)
453 KOG0376 Serine-threonine phosp 32.4 74 0.0016 33.3 4.9 104 454-562 11-115 (476)
454 KOG2659 LisH motif-containing 31.9 4.5E+02 0.0096 24.9 11.3 20 559-578 71-90 (228)
455 KOG4567 GTPase-activating prot 31.8 3E+02 0.0066 27.2 8.4 57 467-528 263-319 (370)
456 PF02847 MA3: MA3 domain; Int 31.6 1.8E+02 0.0039 23.7 6.4 21 523-543 8-28 (113)
457 PRK13800 putative oxidoreducta 31.5 9.4E+02 0.02 28.5 30.6 262 338-632 632-894 (897)
458 KOG4567 GTPase-activating prot 31.5 2.5E+02 0.0054 27.8 7.8 56 327-387 264-319 (370)
459 KOG0686 COP9 signalosome, subu 31.3 6.2E+02 0.013 26.3 15.6 62 201-262 151-214 (466)
460 PF12926 MOZART2: Mitotic-spin 30.7 2.6E+02 0.0056 21.8 7.6 42 573-614 29-70 (88)
461 cd08819 CARD_MDA5_2 Caspase ac 30.3 2.7E+02 0.0058 21.8 6.9 36 318-358 48-83 (88)
462 KOG3364 Membrane protein invol 30.1 3.6E+02 0.0078 23.2 8.5 69 200-270 32-104 (149)
463 PRK13342 recombination factor 29.7 6.8E+02 0.015 26.3 19.2 27 389-415 243-269 (413)
464 COG3107 LppC Putative lipoprot 29.5 7.5E+02 0.016 26.7 11.7 91 201-292 63-158 (604)
465 PF11123 DNA_Packaging_2: DNA 29.4 1.6E+02 0.0036 21.9 4.8 33 216-249 13-45 (82)
466 PF04910 Tcf25: Transcriptiona 29.3 6.5E+02 0.014 25.9 20.3 200 428-632 10-269 (360)
467 PF11817 Foie-gras_1: Foie gra 29.1 2.8E+02 0.006 26.7 8.2 60 343-402 180-244 (247)
468 PRK09857 putative transposase; 29.0 3.8E+02 0.0082 26.6 9.2 66 555-621 209-274 (292)
469 PF13934 ELYS: Nuclear pore co 28.6 4.3E+02 0.0094 25.0 9.1 98 172-281 86-183 (226)
470 KOG4279 Serine/threonine prote 28.6 9.1E+02 0.02 27.4 13.3 113 289-404 181-315 (1226)
471 PRK12798 chemotaxis protein; R 28.2 7.1E+02 0.015 26.0 21.0 194 201-404 82-285 (421)
472 PRK13800 putative oxidoreducta 28.2 1.1E+03 0.023 28.1 29.6 262 303-597 632-894 (897)
473 COG4003 Uncharacterized protei 28.1 2E+02 0.0044 21.9 5.2 40 592-632 36-75 (98)
474 PF11817 Foie-gras_1: Foie gra 27.5 3E+02 0.0065 26.5 8.1 62 307-368 179-245 (247)
475 COG5108 RPO41 Mitochondrial DN 27.5 4.7E+02 0.01 29.0 9.7 75 452-529 33-115 (1117)
476 PRK11639 zinc uptake transcrip 27.1 2.4E+02 0.0052 25.3 6.8 60 332-392 17-76 (169)
477 PF09986 DUF2225: Uncharacteri 26.9 2.8E+02 0.0061 26.0 7.5 23 241-263 171-193 (214)
478 PRK11639 zinc uptake transcrip 26.9 2.4E+02 0.0052 25.3 6.7 45 453-497 31-75 (169)
479 PF14669 Asp_Glu_race_2: Putat 26.8 5E+02 0.011 23.8 14.2 183 369-577 1-206 (233)
480 PF11768 DUF3312: Protein of u 26.8 6.2E+02 0.014 27.4 10.5 22 169-190 413-434 (545)
481 KOG1839 Uncharacterized protei 26.7 6.6E+02 0.014 30.4 11.5 156 456-611 941-1123(1236)
482 cd08819 CARD_MDA5_2 Caspase ac 26.2 3.2E+02 0.0069 21.4 7.5 65 326-396 22-86 (88)
483 PF09868 DUF2095: Uncharacteri 25.8 2.8E+02 0.006 22.8 5.9 40 241-281 67-106 (128)
484 KOG0687 26S proteasome regulat 25.8 6.9E+02 0.015 25.1 18.4 135 337-475 66-209 (393)
485 PF15297 CKAP2_C: Cytoskeleton 25.7 3.7E+02 0.0081 27.2 8.2 63 287-351 119-185 (353)
486 COG0790 FOG: TPR repeat, SEL1 25.7 6.4E+02 0.014 24.7 24.9 16 462-477 206-221 (292)
487 PF06957 COPI_C: Coatomer (COP 25.5 2.6E+02 0.0056 29.3 7.5 123 492-635 214-346 (422)
488 PF09454 Vps23_core: Vps23 cor 25.5 1.7E+02 0.0037 21.4 4.4 29 272-301 10-38 (65)
489 KOG0530 Protein farnesyltransf 25.5 6.3E+02 0.014 24.6 19.9 233 164-402 43-294 (318)
490 PF13762 MNE1: Mitochondrial s 25.4 4.5E+02 0.0098 22.9 12.2 82 484-565 41-128 (145)
491 PF09868 DUF2095: Uncharacteri 25.3 2.8E+02 0.0061 22.8 5.9 35 523-558 67-101 (128)
492 KOG1114 Tripeptidyl peptidase 25.3 1.1E+03 0.025 27.5 15.9 51 551-601 1230-1281(1304)
493 COG4003 Uncharacterized protei 25.1 2.9E+02 0.0062 21.1 5.5 33 523-556 37-69 (98)
494 PF03745 DUF309: Domain of unk 24.9 2.6E+02 0.0056 20.2 5.3 48 457-504 9-61 (62)
495 PF09454 Vps23_core: Vps23 cor 24.6 1.9E+02 0.0042 21.1 4.6 29 519-547 10-38 (65)
496 PRK14956 DNA polymerase III su 23.9 7.4E+02 0.016 26.7 10.5 37 269-306 247-283 (484)
497 PF10366 Vps39_1: Vacuolar sor 23.4 3.4E+02 0.0074 22.2 6.4 26 238-263 42-67 (108)
498 PF00244 14-3-3: 14-3-3 protei 23.3 6.6E+02 0.014 24.0 13.0 38 347-384 7-44 (236)
499 PF13762 MNE1: Mitochondrial s 23.2 5E+02 0.011 22.6 10.5 98 362-459 23-127 (145)
500 PF14561 TPR_20: Tetratricopep 23.1 3.7E+02 0.0081 21.0 8.5 66 232-297 19-85 (90)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.4e-64 Score=563.21 Aligned_cols=516 Identities=19% Similarity=0.280 Sum_probs=471.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHH
Q 044251 159 IGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 159 ~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
.+..+...+..++..+++.|++++|+++|++|...+....+...+..++..|.+.|.+++|..+|+.|.. |+..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 4455678899999999999999999999999999876666777888899999999999999999999986 999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 239 NAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+ +++|.++|++|.+.|+.||..+|+.+|.+|++
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~-vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK-VDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044251 319 EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT--KGLKPTSATFNILMDAYSRRMQPEIVE 396 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~ 396 (686)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.|+.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999986 579999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 397 KLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE 476 (686)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 476 (686)
++|+.|.+.|+.|+..+|+.+|.+|++.|+. ++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~-deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW-DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999887 889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044251 477 EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYN 556 (686)
Q Consensus 477 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 556 (686)
|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+||.||.+|++.|++++|.++|++|...|+.||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHH
Q 044251 557 MLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR----V-------------------RDFKRAFFYHKQM 613 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m 613 (686)
.|+.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|+.+|++|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876542 1 2246899999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhhhh-------------hcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCc
Q 044251 614 VKSGQVPDVKSYEKLRSILDVKVA-------------TKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQ 680 (686)
Q Consensus 614 ~~~g~~p~~~~~~~l~~~l~a~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~ 680 (686)
++.|+.||..+|..++..+..... ............++.+ +.. ...+|..+|.+|.+.+. -|
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g---~~~-~~~~A~~l~~em~~~Gi-~p 913 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG---FGE-YDPRAFSLLEEAASLGV-VP 913 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh---hcc-ChHHHHHHHHHHHHcCC-CC
Confidence 999999999999999876622110 0111111111222211 111 13589999999999997 78
Q ss_pred cccCC
Q 044251 681 SHAHN 685 (686)
Q Consensus 681 ~~~~~ 685 (686)
+.+.+
T Consensus 914 ~~~~~ 918 (1060)
T PLN03218 914 SVSFK 918 (1060)
T ss_pred Ccccc
Confidence 77643
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.4e-61 Score=538.98 Aligned_cols=464 Identities=17% Similarity=0.247 Sum_probs=440.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
.+.-.+..++..+.+.|.+++|+.+|+.|.. ++..+|+.++.+|++.|+++.|.++|+.|...+..||..+|+.|
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL 478 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3445556788889999999999999998864 56799999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+ +++|+++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~-~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~ 557 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 322 KNEALIIQMEMEK--KGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 322 ~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
+++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|
T Consensus 558 ~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999986 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK 479 (686)
Q Consensus 400 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 479 (686)
++|.+.|+.||..+|+.++.+|++.|+. ++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.
T Consensus 638 ~eM~~~Gv~PD~~TynsLI~a~~k~G~~-eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 638 DDMKKKGVKPDEVFFSALVDVAGHAGDL-DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999887 889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 480 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.|+
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHh----c-------------------CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 560 NAYGR----G-------------------GQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 560 ~~~~~----~-------------------g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
..|.+ . +..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 76442 1 123679999999999999999999999998888999999999999999888
Q ss_pred CCCCCHHHHHHHHHHH
Q 044251 617 GQVPDVKSYEKLRSIL 632 (686)
Q Consensus 617 g~~p~~~~~~~l~~~l 632 (686)
+..|+..+|..+++.+
T Consensus 877 ~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGF 892 (1060)
T ss_pred CCCcchhhhHHHHHhh
Confidence 8889999999999887
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-59 Score=536.05 Aligned_cols=452 Identities=21% Similarity=0.286 Sum_probs=416.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CC--------------------------------CCCHHHHHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQE--PS--------------------------------LVSPRACSVLF 207 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~--~~--------------------------------~~~~~~~~~l~ 207 (686)
.+...++.++..+++.|++++|+++|+.|...+ |+ ..+..+++.++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 466788999999999999999999999997652 21 12445678888
Q ss_pred HHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCH
Q 044251 208 PVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSA 287 (686)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 287 (686)
.+|++.|++++|.++|+.|.. +|+.+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+ .
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~-~ 304 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD-E 304 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-h
Confidence 999999999999999999986 88999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 288 KEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (686)
+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864 58899999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCh
Q 044251 368 KTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTS 447 (686)
Q Consensus 368 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 447 (686)
.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+.+|++.|+. ++|.++|+.|.+ +|.
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~-~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI-DKALEVFHNIPE----KDV 455 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH-HHHHHHHHhCCC----CCe
Confidence 999999999999999999999999999999999999999999999999999999999887 889999999975 588
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF 527 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 527 (686)
.+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+++.|+.++..++|+|+++|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 9999999999999999999999999986 599999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 607 (686)
+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 9999999998888876 57888999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHH-HCCCCCCHHHHHHHHHHHH
Q 044251 608 FYHKQMV-KSGQVPDVKSYEKLRSILD 633 (686)
Q Consensus 608 ~~~~~m~-~~g~~p~~~~~~~l~~~l~ 633 (686)
++|+.|. +.|+.|+..+|..++++|.
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 9999988 5688888888888888883
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.5e-59 Score=532.58 Aligned_cols=498 Identities=19% Similarity=0.214 Sum_probs=465.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHH
Q 044251 159 IGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 159 ~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
+..++...+..++..+.+.+.++.|.+++..+....+. .+...++.++..|++.|+++.|+++|+.|.. +|+.+|
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~ 155 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSW 155 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEH
Confidence 34556777888999999999999999999999887654 5668899999999999999999999999987 899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 239 NAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
|.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+. +..+.+++..|.+.|+.|+..+++.|+.+|++
T Consensus 156 n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD-LARGREVHAHVVRFGFELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc-hhhHHHHHHHHHHcCCCcccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 319 EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKL 398 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 398 (686)
.|++++|.++|++|.. +|..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.++
T Consensus 235 ~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 235 CGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred CCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 9999999999999964 588999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 399 LLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI 478 (686)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 478 (686)
+..|.+.|+.||..+|+.++.+|++.|+. ++|.++|+.|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+
T Consensus 311 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~-~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSW-GEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhcCCH-HHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999887 889999999964 6899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 479 KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNML 558 (686)
Q Consensus 479 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 558 (686)
.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+||.|+++|+++|++++|.++|++|. .+|..+|+.+
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~m 461 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSI 461 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 5689999999
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhh-
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVA- 637 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~- 637 (686)
|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..|++.|+.+|..+++.+++.+..++.
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999999986 69999999999999999999999999999999999999999999999888844332
Q ss_pred ----------hcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 638 ----------TKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 638 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
.++...|+.++..+ . .+|+.++|+++|.+|.+.+. .||+
T Consensus 541 ~~A~~~f~~~~~d~~s~n~lI~~~-~----~~G~~~~A~~lf~~M~~~g~-~Pd~ 589 (857)
T PLN03077 541 NYAWNQFNSHEKDVVSWNILLTGY-V----AHGKGSMAVELFNRMVESGV-NPDE 589 (857)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHH-H----HcCCHHHHHHHHHHHHHcCC-CCCc
Confidence 44566787777776 2 56689999999999999876 5553
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-58 Score=515.59 Aligned_cols=451 Identities=18% Similarity=0.285 Sum_probs=429.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
...++.++..+.+.|++++|+++|++|....+..++..+|+.++.++++.++++.+.+++..|...|..||..+||.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34567889999999999999999999998877778899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
+|++.|++++|.++|++|. .||..+|++++.+|++.|+ +++|+++|++|.+.|+.|+..+|+.++.+|++.|..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~-~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGN-YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999999997 5899999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
.+.+++..+.+.|+.+|..+|+.||.+|++.|++++|.++|++|.. +|.++||.|+.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999964 589999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 044251 404 DMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIE 483 (686)
Q Consensus 404 ~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 483 (686)
+.|+.||..+|+.++.+|++.|.. +.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~-~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALL-EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccch-HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 999999999999999999999887 8899999999999999999999999999999999999999999995 47999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGK-IGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~ 562 (686)
+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.|+.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999975 69999999999999999
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD-VKSYEKLRSILD 633 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~l~ 633 (686)
++.|++++|.+++++| ++.||..+|+.|+.+|...|+++.|..+++++.+ +.|+ ..+|..+++++.
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHH
Confidence 9999999999999876 6799999999999999999999999999999975 4464 578888888874
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.9e-56 Score=494.94 Aligned_cols=441 Identities=20% Similarity=0.262 Sum_probs=420.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYN 239 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 239 (686)
..++...+..++..+++.++++.|.+++..+...+ ..++..+++.++.+|++.|++++|.++|++|.. ||..+||
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 35788899999999999999999999999998874 345789999999999999999999999999987 8999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|. .+.+.+++..+.+.|+.+|..+++.|+.+|++.
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~-~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS-ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
|++++|.++|+.|.. +|..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 273 g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999965 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK 479 (686)
Q Consensus 400 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 479 (686)
..|.+.|+.||..+|++|+.+|++.|+. ++|.++|+.|.+ +|..+||.||.+|++.|+.++|+++|++|.+.|+.
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~-~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRM-EDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCH-HHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999887 889999999964 69999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMS-EKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNML 558 (686)
Q Consensus 480 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 558 (686)
||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~L 500 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAAL 500 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHH
Confidence 9999999999999999999999999999986 599999999999999999999999999999865 578999999999
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVP 620 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 620 (686)
+.+|...|+++.|..+++++.+ +.|+ ..+|..|++.|++.|++++|.+++++|.+.|+..
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999974 5664 7799999999999999999999999999999753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-27 Score=278.17 Aligned_cols=503 Identities=15% Similarity=0.080 Sum_probs=354.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+...+..+...+.+.|++++|+++|+.+....|. +...+..++..+...|++++|+..|+.+..... ........++
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 438 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDPE--NAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLI 438 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHH
Confidence 3444555555566666666666666666555443 234555555556666666666666665544322 3344455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK 322 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 322 (686)
..+.+.|++++|+++++.+.... +.+..+|..+...+...|+ +++|.+.|+++.+... .+...+..+...+...|++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCH
Confidence 66666666666766666665542 3456677777777777777 7888888887776542 3456667777777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
++|.+.++.+...+ +.+..++..+...+.+.|++++|..+|+++...+.. +...+..++..+...|++++|..+++.+
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888877764 336777777888888888888888888887765432 5556777788888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 044251 403 QDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI 482 (686)
Q Consensus 403 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 482 (686)
.+.. ..+...+..+...+...|+. ++|...|+.+.+..+. +...+..+..+|.+.|++++|..+|+++.+. .+.+.
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~ 669 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDL-NKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNT 669 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH
Confidence 7653 34667778888888887776 7788888888776533 5667778888888888888888888888774 33456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
.++..++..+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|...++++...+ |+..++..++.++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 788888888888888888888888888776 5677788888888889999999999999888764 4446777888889
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchh
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRR 642 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~ 642 (686)
.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|.++|+++++.. .+++.++..++.++......+...
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~ 824 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALE 824 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 99999999999999988753 4468888889999999999999999999998865 345667777666653222111111
Q ss_pred hhHHHHH---------HHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 643 DKSAILG---------IINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 643 ~~~~~~~---------~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
.....+. ...+......|+.++|+..|.++.+.+|.++.+
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Confidence 1111100 011222345678899999999999999987654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-27 Score=277.82 Aligned_cols=462 Identities=16% Similarity=0.101 Sum_probs=249.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 044251 170 LLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG 249 (686)
Q Consensus 170 l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (686)
++..+.+.|++++|+.+++.+....|. ++..+..++.++...|++++|...|+++.... +.+...+..++..+...|
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 513 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPD--NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEG 513 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCC
Confidence 334444444444555444444443332 22445555555555555555555555544322 234444555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 250 RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
++++|.+.|+++...+ +.+..++..+...+...|+ .++|..+++++.+.+. .+...+..++..+.+.|++++|..++
T Consensus 514 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGN-EEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555554432 2334455555555555554 5555555555554432 23444555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 330 MEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 409 (686)
+.+.+. .+.+...|..+..+|...|++++|...|+.+.+.... +...+..+..++...|++++|..+++++.+.. ..
T Consensus 591 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 591 NEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 555543 2334555555555555556666666655555544221 34445555555555566666666655555432 12
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALL 489 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 489 (686)
+...+..+...+...|+. +.|..+++.+...++. +...+..+...+...|++++|...|+.+... .|+..++..++
T Consensus 668 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 743 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRT-ESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLH 743 (899)
T ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHH
Confidence 344555555555555544 5556666555554432 4445555555566666666666666665553 23334555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 569 (686)
.++.+.|++++|.+.++.+++.. +.+..+++.+...|...|++++|..+|+++.+.. +.+..+++.++..+...|+ .
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-H
Confidence 56666666666666666665544 4455556666666666666666666666665554 3355566666666666666 5
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchhhhHHHH
Q 044251 570 KLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAIL 648 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~ 648 (686)
+|+.+++++... .| +..++..+..++...|++++|..+++++++.+.. ++.++..++.++
T Consensus 821 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~---------------- 881 (899)
T TIGR02917 821 RALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALAL---------------- 881 (899)
T ss_pred HHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH----------------
Confidence 566666666543 22 3445555555666666666666666666655422 455555554444
Q ss_pred HHHHhcccchhhcccchhHHHHHHHh
Q 044251 649 GIINSKMGMVKAKKKGKKDEFWKYKK 674 (686)
Q Consensus 649 ~~~~~~~~~~~~~~~~a~~~f~~~~~ 674 (686)
...|+.++|.++|.+|++
T Consensus 882 --------~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 882 --------LATGRKAEARKELDKLLN 899 (899)
T ss_pred --------HHcCCHHHHHHHHHHHhC
Confidence 245678899999888763
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.6e-22 Score=199.98 Aligned_cols=444 Identities=17% Similarity=0.141 Sum_probs=362.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
....++..+.+.|+|.+|+++-..+.+.+|... .....+..++....+++.-...-..... ..+.-..+|..+.+.+
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~--~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNT--ERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANIL 126 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcc--cceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHH
Confidence 355778899999999999999999988877553 3444455566666666654332222222 2234678999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHH
Q 044251 246 FWCGRYDDAWKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEV-VGALMKSFCDEGLKN 323 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~ 323 (686)
-..|++++|+.+++.+.+. .| ....|..+..++...|+ .+.|.+.|.+.++.+ |+... .+.+...+-..|+++
T Consensus 127 kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~-~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ 201 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGD-LELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLE 201 (966)
T ss_pred HHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCC-CcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccc
Confidence 9999999999999999987 45 46789999999999998 899999999999864 55443 344555556689999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT-SATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
+|...+.+.++... --.+.|..|...+-.+|+...|++.|++..+. .|+ ...|..|.++|...+.+++|...|.+.
T Consensus 202 ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 202 EAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred hhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 99999999888743 35678999999999999999999999999875 344 347888999999999999999999988
Q ss_pred HHcCCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 403 QDMGLEPN-AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS 481 (686)
Q Consensus 403 ~~~~~~p~-~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 481 (686)
... .|+ ...+..+...|...|.. +.|+..|++..+..+. =...|+.|..++-..|++.+|...|.+.+.. .+--
T Consensus 279 l~l--rpn~A~a~gNla~iYyeqG~l-dlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~h 353 (966)
T KOG4626|consen 279 LNL--RPNHAVAHGNLACIYYEQGLL-DLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNH 353 (966)
T ss_pred Hhc--CCcchhhccceEEEEeccccH-HHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCcc
Confidence 765 454 56677777778888776 9999999999887433 3678999999999999999999999999985 2334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT-LMTYNMLMN 560 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~ 560 (686)
....+.|...+...|.++.|..+|...++.. +.-....|.|...|-.+|++++|+..+++.+.. .|+ ...|+.+..
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGn 430 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGN 430 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcch
Confidence 4788999999999999999999999999765 455678999999999999999999999998875 555 678999999
Q ss_pred HHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 044251 561 AYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV-KSYEKLRSIL 632 (686)
Q Consensus 561 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~l 632 (686)
.|...|+.+.|++.+.++.. +.|. ...++.|...|...|+..+|++-++++++ ++||. ..|-.++..+
T Consensus 431 t~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 99999999999999999985 5776 67899999999999999999999999997 45765 3444444433
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=8.2e-20 Score=215.36 Aligned_cols=489 Identities=15% Similarity=0.097 Sum_probs=292.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
....++.+...|++++|++.|+.+....|.... .............|+.++|++.|+++.... +.+...+..+...+.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~-la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPPELD-LAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCCChH-HHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 355567788899999999999999887654432 111122222335688999999999988743 467888889999999
Q ss_pred HcCCHHHHHHHHHHHHhCCC------------------C--------------CCHHHH---------------------
Q 044251 247 WCGRYDDAWKAYEAMEANNV------------------R--------------PDHVTC--------------------- 273 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~------------------~--------------p~~~~~--------------------- 273 (686)
..|++++|++.|+++..... . |+....
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 99999999999888754310 0 110000
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH--------
Q 044251 274 SIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSN-AIVY-------- 344 (686)
Q Consensus 274 ~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~-------- 344 (686)
..+...+...|+ +++|+..|++.++... -+..++..+...+.+.|++++|...|++..+...... ...|
T Consensus 273 ~~~G~~~~~~g~-~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 273 RAQGLAAVDSGQ-GGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 011223455677 8999999999988653 3678888899999999999999999999887643321 1112
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 345 ----NTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA 420 (686)
Q Consensus 345 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 420 (686)
..+...+.+.|++++|+..|+++.+.... +...+..+..++...|++++|++.|+++.+.... +...+..+...
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 12244667889999999999998887433 5567777889999999999999999998875322 33344444433
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCC--------CChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044251 421 YGRPRKMSDMAADAFLRMKRVGIK--------PTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAF 492 (686)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 492 (686)
|.. ++. ++|..+++.+...... .....+..+...+...|++++|+..|++.++.. +-+...+..+...|
T Consensus 429 ~~~-~~~-~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 429 YRQ-QSP-EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHh-cCH-HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 322 122 4444444332211000 001123334444444455555555555444421 11233444444444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHH--------------------------------------------HHHHHHH
Q 044251 493 RRSGDTGMMMKIWKLMMSEKVEGTRVTFN--------------------------------------------ILLDGFA 528 (686)
Q Consensus 493 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------------------------------------------~li~~~~ 528 (686)
...|++++|...++++++.. +.+...+. .+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 44555555555544444332 11221111 2233444
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~ 607 (686)
..|+.++|..+++. .+.+...+..+...+.+.|++++|+..|++..+. .| +...+..++.++...|++++|+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55555666555551 1345566677777788888888888888887764 34 5677777788888888888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhhhhhc---------------chh-hhHHHHHHHHhcccchhhcccchhHHHH
Q 044251 608 FYHKQMVKSGQVPD-VKSYEKLRSILDVKVATK---------------NRR-DKSAILGIINSKMGMVKAKKKGKKDEFW 670 (686)
Q Consensus 608 ~~~~~m~~~g~~p~-~~~~~~l~~~l~a~~~~~---------------~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~f~ 670 (686)
+.++++.+.. |+ ..++..++.++....... ... ...+.+-...+......|+.++|+..|.
T Consensus 658 ~~l~~ll~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 658 AQLAKLPATA--NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHhccC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888776542 33 344444444442211000 000 0011111111333446678889999999
Q ss_pred HHHh
Q 044251 671 KYKK 674 (686)
Q Consensus 671 ~~~~ 674 (686)
+++.
T Consensus 736 ~Al~ 739 (1157)
T PRK11447 736 DAMV 739 (1157)
T ss_pred HHHh
Confidence 9985
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=2.1e-19 Score=211.99 Aligned_cols=499 Identities=11% Similarity=0.071 Sum_probs=328.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHH--------------HHHHHHHHHccCChhHHHHHHHhccc
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRA--------------CSVLFPVLGRARMGDDLMVLFKNLPQ 228 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (686)
+++.+..++..+.+.|++++|.+.++.+.+..|....... ...++..+.+.|++++|++.|+.+..
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 6777888889999999999999999999998876643221 23345578889999999999999887
Q ss_pred CCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC----
Q 044251 229 SKEFRDAH-VYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVK---- 303 (686)
Q Consensus 229 ~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~---- 303 (686)
... ++.. ....+.......|++++|++.|+++.+.. +-+...+..+...+...|+ .++|++.++++.+....
T Consensus 141 ~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~-~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 141 GAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR-RDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred CCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCchHHH
Confidence 443 4432 22222222334589999999999998773 3355667777788888887 89999999988653210
Q ss_pred ------------CCHH---HHH----------------------------------HHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 304 ------------LSQE---VVG----------------------------------ALMKSFCDEGLKNEALIIQMEMEK 334 (686)
Q Consensus 304 ------------~~~~---~~~----------------------------------~li~~~~~~g~~~~A~~~~~~~~~ 334 (686)
++.. .+. .....+...|++++|...|++..+
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0000 000 112345566777778877777777
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHH
Q 044251 335 KGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKP-TSATF------------NILMDAYSRRMQPEIVEKLLLE 401 (686)
Q Consensus 335 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------------~~ll~~~~~~~~~~~a~~~~~~ 401 (686)
.. +.+..++..|..+|.+.|++++|+..|++..+..... ....| ..+...+.+.|++++|+..|++
T Consensus 298 ~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 AN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 63 3366777777777777888888888877777653321 11111 1223455677778888888877
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC--
Q 044251 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK-- 479 (686)
Q Consensus 402 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-- 479 (686)
+.+... .+...+..+...+...|+. ++|++.|+++.+..+. +...+..+...|. .++.++|+.+++.+......
T Consensus 377 Al~~~P-~~~~a~~~Lg~~~~~~g~~-~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 377 ARQVDN-TDSYAVLGLGDVAMARKDY-AAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 776532 2445555566667666665 6777777777766433 3445555555553 35667777776654321100
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 044251 480 ------PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLM 553 (686)
Q Consensus 480 ------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 553 (686)
.....+..+...+...|++++|++.++++++.. +.+..++..+...|.+.|++++|...++++.+.. +.+..
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 011234456677788999999999999999876 5577788889999999999999999999988754 22444
Q ss_pred HHHHHHHHHH--------------------------------------------hcCCccHHHHHHHHHHHCCCCCCHHH
Q 044251 554 TYNMLMNAYG--------------------------------------------RGGQTSKLPQLLKEMATLNIKPDSVT 589 (686)
Q Consensus 554 ~~~~li~~~~--------------------------------------------~~g~~~~A~~l~~~m~~~g~~pd~~~ 589 (686)
.+..+...+. ..|+.++|..+++ ..+.+...
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~~~~~ 605 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPPSTRI 605 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCCCchH
Confidence 4433333333 4444455554444 12346677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhc--------------chhhhHHHHHHHHhcc
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATK--------------NRRDKSAILGIINSKM 655 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~--------------~~~~~~~~~~~~~~~~ 655 (686)
+..+...+.+.|++++|+..++++++.. ..+...+..++.++....... +.......++. .
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~----~ 680 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL----A 680 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH----H
Confidence 8889999999999999999999999864 234566666776663221110 11111111122 2
Q ss_pred cchhhcccchhHHHHHHHhhCCCCcc
Q 044251 656 GMVKAKKKGKKDEFWKYKKRHPRTQS 681 (686)
Q Consensus 656 ~~~~~~~~~a~~~f~~~~~~~p~~~~ 681 (686)
....|+.++|.+.|.+++...|+++.
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 23556889999999999999887664
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=7.1e-21 Score=189.81 Aligned_cols=408 Identities=15% Similarity=0.127 Sum_probs=332.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHH
Q 044251 173 LMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYD 252 (686)
Q Consensus 173 ~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (686)
.+.+..+++.....-....+..|.. .++|..++.++-..|++++|+.+++.+.+..+ ..+..|..+..++...|+.+
T Consensus 91 i~~q~~r~d~s~a~~~~a~r~~~q~--ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 91 IFFQGSRLDKSSAGSLLAIRKNPQG--AEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred hhhcccchhhhhhhhhhhhhccchH--HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCc
Confidence 3444556666666555555555433 38899999999999999999999999887543 67889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044251 253 DAWKAYEAMEANNVRPDHVTCSIMITA-MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQME 331 (686)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 331 (686)
.|...|.+.... .|+.....+-+.. +...|+ +.+|...|.+.++.... -...|+.|...+-..|++..|++.|++
T Consensus 168 ~a~~~~~~alql--nP~l~ca~s~lgnLlka~Gr-l~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 168 LAVQCFFEALQL--NPDLYCARSDLGNLLKAEGR-LEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred ccHHHHHHHHhc--CcchhhhhcchhHHHHhhcc-cchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHH
Confidence 999999998876 6776655544444 444676 89999999998876432 345788888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 044251 332 MEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPN- 410 (686)
Q Consensus 332 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~- 410 (686)
.++... .-...|-.|...|...+.+++|+..|......... ..+.+..|.-+|..+|+++.|+..|++.++. .|+
T Consensus 244 AvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F 319 (966)
T KOG4626|consen 244 AVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNF 319 (966)
T ss_pred hhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCc
Confidence 988732 24678999999999999999999999888765322 4557888888899999999999999999875 454
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 044251 411 AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI-ETYTALL 489 (686)
Q Consensus 411 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll 489 (686)
...|+.|..++...|+. .+|.+.|.+.....+. ...+.+.|...|...|.+++|..+|....+ +.|.. ..++.|.
T Consensus 320 ~~Ay~NlanALkd~G~V-~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa 395 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSV-TEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLA 395 (966)
T ss_pred hHHHhHHHHHHHhccch-HHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHH
Confidence 67799999999888877 7799999998887544 567888899999999999999999999988 55554 6788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 569 (686)
..|-+.|++++|+..|++.++.. +.-...|+.+...|-..|+.+.|.+.+.+.+..+ +--...++.|...|...|++.
T Consensus 396 ~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcH
Confidence 99999999999999999999775 4457789999999999999999999999988765 224678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPD-SVTYSTMIYAFVR 599 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~ 599 (686)
+|++-+++.+. ++|| +..|-.++.++.-
T Consensus 474 ~AI~sY~~aLk--lkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 474 EAIQSYRTALK--LKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHHHHHHHc--cCCCCchhhhHHHHHHHH
Confidence 99999999995 6887 6677777665543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.8e-17 Score=183.63 Aligned_cols=430 Identities=11% Similarity=0.004 Sum_probs=305.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
.+......+...|++++|+..|+.++...|. +..|..+..+|.+.|++++|+..++...+.. +.+..+|..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD---PVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4556788889999999999999999998774 4788999999999999999999999988744 36788999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044251 246 FWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEA 325 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 325 (686)
...|++++|+.-|......+ ..+......++..+.. ..+.......++... .+...+..+.. +.........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~-----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK-----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH-----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcc
Confidence 99999999999888775542 1122222222221111 122333333333321 11112222222 2111111111
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 326 LIIQMEMEKKGIPSN-AIVYNTLINA---YCKSNQLEEAEGLFQEMKTKG-LKP-TSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 326 ~~~~~~~~~~g~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
..-+....+. .+. ...+..+... ....+++++|.+.|+...+.+ ..| ....|+.+..++...|++++|...+
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111111111 111 0111111111 123478999999999998764 233 3457888888889999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 400 LELQDMGLEPN-AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI 478 (686)
Q Consensus 400 ~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 478 (686)
++..+. .|+ ...|..+...+...|+. ++|...|+.+.+..+. +...|..+...+...|++++|+..|++.+...
T Consensus 355 ~kal~l--~P~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~- 429 (615)
T TIGR00990 355 SKSIEL--DPRVTQSYIKRASMNLELGDP-DKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD- 429 (615)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 998876 343 55677777777777777 8899999998887544 67888899999999999999999999998852
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------
Q 044251 479 KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTL------ 552 (686)
Q Consensus 479 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------ 552 (686)
+.+...+..+..++.+.|++++|+..++..++.. +.+..+++.+...+...|++++|...|++........+.
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~ 508 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL 508 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHH
Confidence 3356778888889999999999999999998765 667889999999999999999999999998876432111
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 553 MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 553 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
..++..+..+...|++++|.+++++.... .| +..++..++.++...|++++|+.+|+++.+..
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 12233333444579999999999998875 45 45678899999999999999999999998764
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.5e-19 Score=187.20 Aligned_cols=300 Identities=16% Similarity=0.163 Sum_probs=200.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCH
Q 044251 316 FCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT---SATFNILMDAYSRRMQP 392 (686)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~ 392 (686)
+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555542 22344555555555555555555555555554321111 12344455555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----hhhHhhhHHHHHhcCCHHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT----SHSYTALIHAYSVGGWHEKAYA 468 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 468 (686)
+.|..+|.++.+.. ..+...+..+...+.+.|+. ++|.+.++.+.+.+..+. ...+..++..+.+.|++++|..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDW-QKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchH-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55555555554431 22344555555555555444 455555555554433221 1234566777888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 044251 469 AFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL 548 (686)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 548 (686)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999888752 334567778888889999999999999998876533335678888999999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR---VRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.++++|++.++.|++.
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 56566788899999999999999999998864 7888888888877664 558899999999999888777775
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=7.2e-17 Score=182.01 Aligned_cols=486 Identities=10% Similarity=0.012 Sum_probs=287.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
...-+......+...|++++|+..|+.+++..|.. +.++..++..|.+.|+.++|+..+++.....+ .|...+..+.
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n--~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La 119 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN--IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLA 119 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHH
Confidence 34444555556666699999999999999998876 58889999999999999999999999887433 5666666653
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH--------HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDH-VTCSIMITA--------MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGAL- 312 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~--------~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~l- 312 (686)
.. +++++|..+++++.+. .|+. ..+..+... |.+ .++|.+.++ .......|+..+....
T Consensus 120 ~i----~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q----~eqAl~AL~-lr~~~~~~~~~vL~L~~ 188 (987)
T PRK09782 120 AI----PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQ----LPVARAQLN-DATFAASPEGKTLRTDL 188 (987)
T ss_pred Hh----ccChhHHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhh----HHHHHHHHH-HhhhCCCCCcHHHHHHH
Confidence 32 8888999999999876 4543 333333333 333 455555555 3333344445555554
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 313 MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK-SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ 391 (686)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (686)
.+.|.+.|++++|+.++..+.+.+.. +......|..+|.. .++ +++..+++.. ++-+...+..++..|.+.|+
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~ 262 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGE 262 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCC
Confidence 78888888888888888888877533 45555556666666 355 6666664431 22356666667777777777
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHH------------------------------HHHh-------------------
Q 044251 392 PEIVEKLLLELQDMGLE-PNAKSYTCL------------------------------ISAY------------------- 421 (686)
Q Consensus 392 ~~~a~~~~~~m~~~~~~-p~~~~~~~l------------------------------l~~~------------------- 421 (686)
.++|.++++++...-.. |...++.-+ +..+
T Consensus 263 ~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (987)
T PRK09782 263 KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPAN 342 (987)
T ss_pred HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcc
Confidence 77776666665432110 111110000 0000
Q ss_pred --------------------------------------------cCCCChHHHHHHHHHHHHHc----------------
Q 044251 422 --------------------------------------------GRPRKMSDMAADAFLRMKRV---------------- 441 (686)
Q Consensus 422 --------------------------------------------~~~~~~~~~A~~~~~~~~~~---------------- 441 (686)
...|+. ++|..+|+.....
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 343 EMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQS-REAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred hHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccH-HHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 001111 2222222222110
Q ss_pred -----------------------------------------------CC-CC--ChhhHhhhHHHHHhcCCHHHHHHHHH
Q 044251 442 -----------------------------------------------GI-KP--TSHSYTALIHAYSVGGWHEKAYAAFE 471 (686)
Q Consensus 442 -----------------------------------------------~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 471 (686)
+. .+ +...|..+..++.. ++.++|+..+.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 00 01 23334444444444 55666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 044251 472 NMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT 551 (686)
Q Consensus 472 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 551 (686)
+.... .|+......+...+...|++++|...|+++... +++...+..+...+.+.|++++|...+++..+.. +.+
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~ 575 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGD 575 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Ccc
Confidence 65553 344443334444456777788888777776543 3333445556666777788888888887777654 223
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 044251 552 LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD-VKSYEKLRS 630 (686)
Q Consensus 552 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 630 (686)
...+..+...+.+.|++++|...+++..+. .|+...|..+..++.+.|++++|...++++++.. |+ ...+..++.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~ 651 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGY 651 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 333434444445568888888888887753 5677777777888888888888888888877654 44 344445554
Q ss_pred HHHhhh--------------hhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCcccc
Q 044251 631 ILDVKV--------------ATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSHA 683 (686)
Q Consensus 631 ~l~a~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~~ 683 (686)
++.... ..++.......++.. ....|+.++|+..|.++.+..|++.++.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a----l~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYV----NQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 442211 111111111122222 2345567788888888888888776654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=3.5e-17 Score=181.36 Aligned_cols=415 Identities=11% Similarity=-0.015 Sum_probs=289.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 202 ACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMR 281 (686)
Q Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 281 (686)
.+...+..+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4556677788999999999999998763 3678889999999999999999999999998763 335678888999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 282 KNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAE 361 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 361 (686)
..|+ +++|+..|..+...+...+.. ...++..+.. ..+........+.. +.+...+..+.. |......+...
T Consensus 206 ~lg~-~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGK-YADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HcCC-HHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 9998 999999888776553222222 2222222111 12223333333331 122222222222 22222222222
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHhcCCCChHHHHHHHH
Q 044251 362 GLFQEMKTKGLKPTS-ATFNILMDA---YSRRMQPEIVEKLLLELQDMG-LEP-NAKSYTCLISAYGRPRKMSDMAADAF 435 (686)
Q Consensus 362 ~~~~~m~~~g~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~~A~~~~ 435 (686)
.-+....+. .+.. ..+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|+. ++|...|
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~-~eA~~~~ 354 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH-LEALADL 354 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence 212211111 1111 111111111 123578999999999998765 234 345566666777777776 8899999
Q ss_pred HHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044251 436 LRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEG 515 (686)
Q Consensus 436 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 515 (686)
+...+..+. ....|..+...+...|++++|+..|+++++. .+.+..+|..+...+...|++++|...|++.++.. +.
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 999887543 4668888999999999999999999999885 23457889999999999999999999999999876 56
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-----CHH-H
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-----DSV-T 589 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~-~ 589 (686)
+...+..+...+.+.|++++|+..|++..+.. +.+...|+.+..++...|++++|++.|++.....-.. +.. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 77888889999999999999999999988764 4478899999999999999999999999998642111 111 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhh
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV-KSYEKLRSILDVKV 636 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~l~a~~ 636 (686)
+...+..+...|++++|.++++++++.. |+. ..+..++.++...+
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQG 556 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcc
Confidence 2222223344799999999999998764 544 45777777774433
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=7.5e-19 Score=184.72 Aligned_cols=297 Identities=16% Similarity=0.120 Sum_probs=141.3
Q ss_pred HccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCCH
Q 044251 211 GRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPD---HVTCSIMITAMRKNGRSA 287 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~ 287 (686)
...|++++|+..|+++.... +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+ +
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~-~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL-L 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC-H
Confidence 34444444444444444322 13344444444444444444444444444443211111 1233444444444444 4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 044251 288 KEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSN----AIVYNTLINAYCKSNQLEEAEGL 363 (686)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~ 363 (686)
+.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|..+
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 45555555444431 12334444444555555555555555555444332211 11233444455555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC
Q 044251 364 FQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI 443 (686)
Q Consensus 364 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~ 443 (686)
|+++.+.... +...+..++.++.+.|++++|.++++++.+.+.......+..+..+|...|+. ++|...++.+.+..
T Consensus 203 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~-~~A~~~l~~~~~~~- 279 (389)
T PRK11788 203 LKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE-AEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhC-
Confidence 5555543211 23344445555555555555555555555432221223444555555555444 55555555555543
Q ss_pred CCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCC
Q 044251 444 KPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRR---SGDTGMMMKIWKLMMSEKVEGT 516 (686)
Q Consensus 444 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 516 (686)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+++.++.++
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 33334455566666666666666666666553 4555556555555443 3356666666666665444333
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=3.9e-17 Score=180.30 Aligned_cols=334 Identities=11% Similarity=-0.001 Sum_probs=244.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
....++..+.+.|++++|+.+++.++...|... ..+..++.++...|++++|+..|+++.... +.+...+..+...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGR--DLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch--hHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344567888899999999999999998877664 677777777778999999999999888743 36778888888999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044251 246 FWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEA 325 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 325 (686)
.+.|++++|.+.|+++.... +.+...+..+...+...|+ +++|...++.+...... +...+..+ ..+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~-~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDK-ELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 99999999999999988752 3346677778888888888 88899988888766443 33333333 347788889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH
Q 044251 326 LIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI----VEKLLLE 401 (686)
Q Consensus 326 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~ 401 (686)
...++.+.+....++...+..+...+.+.|++++|+..|+++.+.... +...+..+..++...|++++ |...+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 888888877644444555556677788888888898888888876433 56677778888888888875 6777777
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS 481 (686)
Q Consensus 402 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 481 (686)
..+... .+...+..+...+...|+. ++|...+++.....+. +...+..+..+|.+.|++++|+..|+.+... .|+
T Consensus 276 Al~l~P-~~~~a~~~lg~~l~~~g~~-~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~ 350 (656)
T PRK15174 276 ALQFNS-DNVRIVTLYADALIRTGQN-EKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGV 350 (656)
T ss_pred HHhhCC-CCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc
Confidence 776532 2455666666777777666 6777777777776543 4555666777777788888888887777764 333
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044251 482 I-ETYTALLDAFRRSGDTGMMMKIWKLMMSEK 512 (686)
Q Consensus 482 ~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 512 (686)
. ..+..+..++...|+.++|...|+.+++..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 333334566777778888887777777654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=2.5e-17 Score=185.78 Aligned_cols=423 Identities=12% Similarity=0.076 Sum_probs=262.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHH
Q 044251 159 IGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 159 ~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
..++++......+......|+.++|++++..+....| .....+..++.++.+.|++++|..+|++..... +.+...+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~--~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ--LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3566788888888888899999999988888876433 334678888888889999999999998877643 3567778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 239 NAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
..++.++...|++++|+..++++.+.. +.+.. +..+..++...|+ .++|+..++++++..+. +...+..+..++..
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~-~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~ 162 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGR-HWDELRAMTQALPRAPQ-TQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCC-HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 888888889999999999999887762 33445 7777777888887 88899999988887543 56666677778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHC-CCCCCHH-HH---
Q 044251 319 EGLKNEALIIQMEMEKKGIPSNA------IVYNTLINAYC-----KSNQL---EEAEGLFQEMKTK-GLKPTSA-TF--- 379 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~--- 379 (686)
.|..+.|+..++.+.. .|+. .....++..+. ..+++ ++|+..++.+.+. ...|+.. .+
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 8888888888776553 1111 01111111111 11222 4455555555532 1112111 00
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHH
Q 044251 380 -NILMDAYSRRMQPEIVEKLLLELQDMGLE-PNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY 457 (686)
Q Consensus 380 -~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (686)
...+.++...|++++|+..|+.+.+.+.. |+. ....+..+|
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-------------------------------------a~~~la~~y 282 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-------------------------------------AQRWVASAY 282 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-------------------------------------HHHHHHHHH
Confidence 00122223445555555555555443321 211 111123344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------CCC---HHHH
Q 044251 458 SVGGWHEKAYAAFENMLREEIKP---SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV-----------EGT---RVTF 520 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~ 520 (686)
...|++++|+.+|+++....... .......+..++...|++++|..+++.+.+... .|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 44444444444444443321100 012233333344444555555555444443320 122 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 044251 521 NILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVR 599 (686)
Q Consensus 521 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~ 599 (686)
..+...+...|++++|+++++++.... +.+...+..++..+...|++++|++.+++.... .|| ...+..++..+..
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHH
Confidence 566777778888888888888887665 446778888888888888888888888888863 564 6666777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 600 VRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILD 633 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 633 (686)
.|++++|..+++++++. .|+......+-+.++
T Consensus 440 ~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~~ 471 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAR--EPQDPGVQRLARARD 471 (765)
T ss_pred hCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 88888888888888874 366666666655553
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.4e-16 Score=179.77 Aligned_cols=389 Identities=10% Similarity=0.039 Sum_probs=260.6
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 197 LVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIM 276 (686)
Q Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 276 (686)
..++.-..-.+.+....|+.++|++++...... .+.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345566666677777888888888888777642 23556677888888888888888888888876652 3345556666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 277 ITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQ 356 (686)
Q Consensus 277 l~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 356 (686)
...+...|+ .++|+..++++++... .+.. +..+..++...|+.++|+..++++.+..+ .+...+..+..++...|.
T Consensus 90 a~~l~~~g~-~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQ-YDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 677777777 7888888888877632 2445 77777777778888888888888777643 356666667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCh--HHHHHHH
Q 044251 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKM--SDMAADA 434 (686)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~~A~~~ 434 (686)
.+.|+..++.... .|+. ..-+ +...+...++... .+ .....++. .+.|+..
T Consensus 166 ~e~Al~~l~~~~~---~p~~---~~~l-------~~~~~~~~~r~~~----~~----------~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 166 SAPALGAIDDANL---TPAE---KRDL-------EADAAAELVRLSF----MP----------TRSEKERYAIADRALAQ 218 (765)
T ss_pred hHHHHHHHHhCCC---CHHH---HHHH-------HHHHHHHHHHhhc----cc----------ccChhHHHHHHHHHHHH
Confidence 7777777765543 2220 0000 0000001000000 00 00011111 2557777
Q ss_pred HHHHHHc-CCCCChh-hH----hhhHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 435 FLRMKRV-GIKPTSH-SY----TALIHAYSVGGWHEKAYAAFENMLREEIK-PSIETYTALLDAFRRSGDTGMMMKIWKL 507 (686)
Q Consensus 435 ~~~~~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 507 (686)
++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+.+|+.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 7777754 1122221 11 11134556779999999999999887532 332 223357789999999999999999
Q ss_pred HHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCccH
Q 044251 508 MMSEKVEG---TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL-----------QPT---LMTYNMLMNAYGRGGQTSK 570 (686)
Q Consensus 508 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~ 570 (686)
+++..... .......+..++...|++++|..+++++..... .|+ ...+..+...+...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 88654221 135567777788999999999999999886531 123 2456678889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 044251 571 LPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV 622 (686)
Q Consensus 571 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 622 (686)
|+++++++... .+-+...+..++.++...|++++|++.++++++.. |+.
T Consensus 378 A~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~ 426 (765)
T PRK10049 378 AEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRN 426 (765)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC
Confidence 99999999875 23368889999999999999999999999998754 764
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=8.7e-17 Score=177.52 Aligned_cols=364 Identities=11% Similarity=0.026 Sum_probs=232.9
Q ss_pred HHHhcCChhHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCH
Q 044251 173 LMANDGLLGCCLYFYEWMRLQEP-SLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRY 251 (686)
Q Consensus 173 ~l~~~g~~~~Al~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (686)
.+.++.+++.---+|....+... ...+......++..+.+.|++++|+.+++...... +.+...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 34555555543333333332211 11122334445556677788888888877776633 35566666666777778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044251 252 DDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQME 331 (686)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 331 (686)
++|...|+++.... +.+...+..+...+...|+ +++|...++++++... .+...+..+...+...|++++|...++.
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~-~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ-YATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 88888888877652 3344566666677777777 7888888888777532 2566777777778888888888887777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 044251 332 MEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNA 411 (686)
Q Consensus 332 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 411 (686)
+...... +...+..++ .+...|++++|..+++.+......++...+..++.++...|++++|...++.+..... .+.
T Consensus 170 ~~~~~P~-~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~ 246 (656)
T PRK15174 170 QAQEVPP-RGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGA 246 (656)
T ss_pred HHHhCCC-CHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCH
Confidence 7665333 333443333 3667788888888887776654333444455556677777888888888877776532 245
Q ss_pred HHHHHHHHHhcCCCChHH---HHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044251 412 KSYTCLISAYGRPRKMSD---MAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTAL 488 (686)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 488 (686)
..+..+...+...|+..+ .|...|++.....+. +...+..+...+.+.|++++|+..+++..... +.+...+..+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 556666666666666532 367777777766543 56677777777777777777777777777642 2344556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
..++...|++++|...++.+.+.+ +.+...+..+..++...|+.++|...|++..+.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777777777777777777777654 223333444556667777777777777776654
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=2.8e-15 Score=169.25 Aligned_cols=196 Identities=16% Similarity=0.102 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALL 489 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 489 (686)
+...+..+..++.. ++. ++|...+....... |+......+...+...|++++|...|+++... +|+...+..+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~-~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la 549 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLP-GVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAA 549 (987)
T ss_pred CHHHHHHHHHHHHh-CCc-HHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHH
Confidence 34445555444444 343 45666555555443 33333333333445666666666666665442 33333344445
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 569 (686)
.++.+.|+.+.|...++..++.. +.....+..+...+...|++++|...+++..+.. |+...|..+..++.+.|+++
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHH
Confidence 55555666666666666555543 2222223233333334455555555555555432 34555555555555555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 570 KLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+|+..+++.... .| +...+..+..++...|++++|+..++++++.
T Consensus 627 eA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 627 AAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555555555543 33 3444555555555555555555555555543
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=3.9e-15 Score=164.69 Aligned_cols=453 Identities=12% Similarity=0.069 Sum_probs=334.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
.+......+-...+.|+++.|+..|+.+++..|... ....-++.+++..|+.++|+..+++... ..+.......+++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~--~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS--GQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch--hhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHH
Confidence 444555667778899999999999999999887652 1222778888899999999999999884 2224555556667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK 322 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 322 (686)
..+...|++++|+++|+++.+.. +-+...+..++..+...++ .++|++.++++.... |+...+..++..+...++.
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q-~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGR-GGVVLKQATELAERD--PTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCC-HHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchH
Confidence 79999999999999999998873 3345667777788888888 999999999998764 4555555555555556777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----HhcCC
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATF------NILMDAY-----SRRMQ 391 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~------~~ll~~~-----~~~~~ 391 (686)
.+|++.++++.+.. +.+...+..++.++.+.|-...|+++..+-... +.+....+ ..+++.- ....+
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 67999999999984 447888899999999999999998877654322 11111111 1111110 01122
Q ss_pred H---HHHHHHHHHHHHc-CCCCCH-HHH-H---HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCC
Q 044251 392 P---EIVEKLLLELQDM-GLEPNA-KSY-T---CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGW 462 (686)
Q Consensus 392 ~---~~a~~~~~~m~~~-~~~p~~-~~~-~---~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 462 (686)
+ +.|+.-++.+... +..|.. ..| . -.+.++...+++ .++++.|+.+...+......+-..+..+|...++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~-~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT-ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 2 3455555555432 222322 111 2 234455666666 7899999999988866556688889999999999
Q ss_pred HHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------CC--C-HHHHHHH
Q 044251 463 HEKAYAAFENMLREE-----IKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV-----------EG--T-RVTFNIL 523 (686)
Q Consensus 463 ~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~--~-~~~~~~l 523 (686)
+++|+.+|+.+.... ..++......|.-++...+++++|..+++.+.+... .| | ...+..+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 999999999997643 133444467888899999999999999999997421 12 2 2244556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 044251 524 LDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 524 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~ 602 (686)
+..+...|++.+|++.++++.... +-|......+...+...|++.+|+++++.+.. +.| +..+....+.++...|+
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhh
Confidence 777889999999999999998876 55999999999999999999999999987775 366 47778888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 603 FKRAFFYHKQMVKSGQVPDVKSYEKLRS 630 (686)
Q Consensus 603 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 630 (686)
+++|..+.+.++.. .|+......+-.
T Consensus 500 ~~~A~~~~~~l~~~--~Pe~~~~~~l~r 525 (822)
T PRK14574 500 WHQMELLTDDVISR--SPEDIPSQELDR 525 (822)
T ss_pred HHHHHHHHHHHHhh--CCCchhHHHHHH
Confidence 99999999999875 376665544433
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=9.7e-16 Score=161.75 Aligned_cols=504 Identities=11% Similarity=0.024 Sum_probs=356.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHH
Q 044251 159 IGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEP-SLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHV 237 (686)
Q Consensus 159 ~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 237 (686)
..+-++...+.+.+.+.-.|+++.+..+.+.+..... ...-.+.|..++++|-..|++++|...|..........-+..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 4556778888999999999999999999999887632 122346788899999999999999999987766433122556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 238 YNAAISGLFWCGRYDDAWKAYEAMEANNVRPDH-VTCSIMITAMRKNGR---SAKEAWEFFEKMNRKGVKLSQEVVGALM 313 (686)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~---~~~~a~~~~~~m~~~~~~~~~~~~~~li 313 (686)
+..|...+.+.|+++.+...|+...+. .||. .+...|...|+..+. ..+.|..++.+..+.. +.|...|..+.
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~la 421 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELA 421 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHH
Confidence 677889999999999999999998776 4554 555555555554431 1577888888877764 44777888887
Q ss_pred HHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------HHHH
Q 044251 314 KSFCDEGLKNEALIIQMEM----EKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK---GLKPTS------ATFN 380 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~ 380 (686)
..+-...-+.. +..|..+ ...+-.+.+...|.+.......|+++.|...|...+.. -..++. .+-.
T Consensus 422 ql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 77765544433 6655543 45566678899999999999999999999999887665 122232 2333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhc
Q 044251 381 ILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVG 460 (686)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (686)
.+..++-..++.+.|.+.|..+.+. .|+-.....-+.+..+......+|..++.......- .+...+..+...+.+.
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhh
Confidence 4777777888999999999999876 455443333333333333333668888888776543 3666777777788888
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044251 461 GWHEKAYAAFENMLREE-IKPSIETYTALLDAFRR------------SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF 527 (686)
Q Consensus 461 g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 527 (686)
..+..|..-|......- ..+|..+.-.|.+.|.. .+..++|+++|.++++.. +-|..+-|.+.-.+
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVL 656 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhh
Confidence 88888888777665542 23566666666665542 235678999999999876 67888888899899
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI-KPDSVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A 606 (686)
+..|++.+|..+|.+..+... .+..+|-.+.++|...|++..|+++|+.....-. .-+..+...|.+++.+.|.+.+|
T Consensus 657 A~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999987653 3667899999999999999999999998776533 33688999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhhh-hhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCC
Q 044251 607 FFYHKQMVKSGQVPDVKSYEKLRSILDVKV-ATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPR 678 (686)
Q Consensus 607 ~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~ 678 (686)
.+.+..++.....-....++..+-+..... .....+ .....+.. .-+.-++|..+|.++-.-++.
T Consensus 736 k~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k---~t~eev~~----a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 736 KEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK---RTLEEVLE----AVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc---ccHHHHHH----HHHHHHHHHHHHHHHHhcCCC
Confidence 999998887543222333332222221110 000001 11111211 112457888888888777664
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=7.4e-17 Score=155.60 Aligned_cols=529 Identities=15% Similarity=0.104 Sum_probs=345.8
Q ss_pred hhhccccCCCCCCCCCchhhhhhccCchhhhhhcccCCCCCCCccccccccccccccccccCCcCCCCCCCCccchhhhh
Q 044251 66 PFLQQQRQDPNPQNENHEEDEEEEAIDPLLKFFKSQTPTQDPPALGKLSLQKNRRSSWHLSPHVNSPNQSESDINDISLE 145 (686)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (686)
.+++...++.++|+..+.|.+..+ ....+... ......++++.+.+...++.+-..+ ....+..++.+
T Consensus 128 spleak~ed~peek~kqle~ev~e---ll~es~ia-----n~~~~~k~aldkakdagrker~lvk-~req~~~~e~i--- 195 (840)
T KOG2003|consen 128 SPLEAKGEDGPEEKCKQLEKEVME---LLEESCIA-----NECGDFKEALDKAKDAGRKERALVK-HREQQGLPEMI--- 195 (840)
T ss_pred CchhhccCCChHHHHHHHHHHHHH---HHHHHHHH-----hhhhhHHHHHHHHHhcchhHHHHHH-HHHhccchhhc---
Confidence 345556667777777776665443 11111211 1223345677777776666653333 11111111111
Q ss_pred HHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHh
Q 044251 146 DEAKQQMGSLPDGIGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKN 225 (686)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (686)
+-.++-..+..++..|.....+.+|+-.|+-+.+..-+...-..--.+..++.+.+.+.+|++.|+-
T Consensus 196 -------------nldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrm 262 (840)
T KOG2003|consen 196 -------------NLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRM 262 (840)
T ss_pred -------------cccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHH
Confidence 2345777888899999999999999999999998855544334444567778899999999998875
Q ss_pred cccC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 044251 226 LPQS----KEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVT-CSIMITAMRKNGRSAKEAWEFFEKMNRK 300 (686)
Q Consensus 226 ~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 300 (686)
.... .........+.+...+.+.|+++.|+..|+...+. .|+..+ +|..|.++ .-|+ .+...+.|.+|+..
T Consensus 263 aldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f-~i~d-~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 263 ALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF-AIGD-AEKMKEAFQKLIDI 338 (840)
T ss_pred HHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe-ecCc-HHHHHHHHHHHhcC
Confidence 4442 11123567788888899999999999999998776 688755 55545444 4455 78999999999875
Q ss_pred CCC------------CCHHHHHHHH-----HHHHhcCC--HHHHHHHHHHHHHCCCCCCHH-------------------
Q 044251 301 GVK------------LSQEVVGALM-----KSFCDEGL--KNEALIIQMEMEKKGIPSNAI------------------- 342 (686)
Q Consensus 301 ~~~------------~~~~~~~~li-----~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~------------------- 342 (686)
... |+....+..+ +..-+.+. .+.+.-.-.++...-+.|+-.
T Consensus 339 p~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la 418 (840)
T KOG2003|consen 339 PGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELA 418 (840)
T ss_pred CCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhh
Confidence 322 2333333222 22222221 112211111111111112110
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 343 --VYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAY--SRRMQPEIVEKLLLELQDMGLEPNAKSYTCLI 418 (686)
Q Consensus 343 --~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 418 (686)
.-..-...|.++|+++.|+++++-+....-+.-...-+.|...+ ....++..|..+-+...... .-+......--
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkg 497 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKG 497 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCC
Confidence 01112345778999999999998887764332223333333222 22446677777766655321 11222222222
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044251 419 SAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDT 498 (686)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 498 (686)
......|++ ++|.+.|++.......-....|| +...+-..|++++|+++|-++..- +..+...+..+...|....+.
T Consensus 498 n~~f~ngd~-dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 498 NIAFANGDL-DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred ceeeecCcH-HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 223345566 88999999988753222222333 344677889999999999887653 345778888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 044251 499 GMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 499 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 578 (686)
..|++++.+.... ++.|+.+++-|.+.|-+.|+-..|++.+-+--.. ++-|..+...|...|....-+++++.+|+++
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999888654 4778999999999999999999999987664333 4668999999999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 579 ATLNIKPDSVTYSTMIYAF-VRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 579 ~~~g~~pd~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
.- +.|+..-|..++..| .+.|++.+|+.+++...+. +.-|.....-|+++.
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~ 704 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA 704 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence 74 699999998888765 6789999999999998765 556777766666664
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.9e-14 Score=159.32 Aligned_cols=414 Identities=14% Similarity=0.073 Sum_probs=313.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 168 VQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 168 ~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
..++..+...|+.++|+.+++.+. .|..........++..+...|++++|+++|+++.+..+ .+..++..++..+..
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhh
Confidence 367888888999999999999999 45455556666667899999999999999999998544 678888899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALI 327 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (686)
.++.++|++.++++... .|+...+..++..+...++ ..+|++.++++.+..+ -+...+..++.++.+.|-...|++
T Consensus 149 ~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~-~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 149 AGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR-NYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred cCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999876 6776666444444444455 5569999999999853 378888999999999999999998
Q ss_pred HHHHHHHCCCCCCHHHH--HHHHHHHH---------HcCC---HHHHHHHHHHHHHC-CCCCCHH-----HHHHHHHHHH
Q 044251 328 IQMEMEKKGIPSNAIVY--NTLINAYC---------KSNQ---LEEAEGLFQEMKTK-GLKPTSA-----TFNILMDAYS 387 (686)
Q Consensus 328 ~~~~~~~~g~~~~~~~~--~~li~~~~---------~~g~---~~~A~~~~~~m~~~-g~~p~~~-----~~~~ll~~~~ 387 (686)
+...-... +.+....+ ...+.-.+ ..++ .+.|+.-++.+... +..|... ...-.+.++.
T Consensus 225 l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 225 LAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 77764432 11111111 00111111 1122 34566666666552 2223321 2234566788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC-----CCChhhHhhhHHHHHhcCC
Q 044251 388 RRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI-----KPTSHSYTALIHAYSVGGW 462 (686)
Q Consensus 388 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~ 462 (686)
..++..++++.|+.|...+......+-..+..+|...+.. ++|..+|..+..... .++......|..+|...++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P-~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP-EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 8999999999999999888765667888899999988666 899999999876531 2234446788999999999
Q ss_pred HHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 463 HEKAYAAFENMLREEI-----------KPSI---ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 463 ~~~A~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
+++|..+++.+.+... .|+. ..+..++..+...|++.+|++.++.+.... |.|..+...+.+.+.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~ 461 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 9999999999987311 1222 345566778899999999999999998776 889999999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMI 594 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 594 (686)
..|.+.+|...++.+.... +-+..+...++.++...|++.+|..+.+.+.+. .|+......|-
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~ 524 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELD 524 (822)
T ss_pred hcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHH
Confidence 9999999999998877664 447788888999999999999999999999864 67655443333
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=1.2e-13 Score=145.26 Aligned_cols=507 Identities=15% Similarity=0.069 Sum_probs=344.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
....+..+...|++++|.+++..+..+.|... .+|..|+.+|-.+|+.+++...+-...... +.|...|-.+.....
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~--~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNP--IAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34456667777999999999999999987554 899999999999999999988776554432 367799999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCH
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVG----ALMKSFCDEGLK 322 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~ 322 (686)
+.|.++.|.-.|.+..... +++...+---...|-+.|. ...|.+-|.++.+...+.|..-+. ..++.+...++-
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~-~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGD-LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhCh-HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999998874 4555555556677888898 899999999999886543433333 345667778888
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---------------------------
Q 044251 323 NEALIIQMEMEKK-GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKP--------------------------- 374 (686)
Q Consensus 323 ~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------------------------- 374 (686)
+.|.+.++..... +-..+...++.++..|.+...++.|......+......+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999988887763 234466778899999999999999999888887622212
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhh
Q 044251 375 TSATFNILMDAYSRRMQPEIVEKLLLELQDMG--LEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTA 452 (686)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 452 (686)
+...+ -++-++...+..+....+...+.+.. +.-+...|.-+..+|...|.. ..|+.+|..+......-+...|-.
T Consensus 377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~-~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 377 DLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY-KEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred cchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH-HHHHHHHHHHhcCccccchhhhHH
Confidence 22221 12233344455555555555555555 333567788888888888776 779999998887755556778888
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCCCCCHHHHHHHH
Q 044251 453 LIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS--------EKVEGTRVTFNILL 524 (686)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~li 524 (686)
+..+|...|..++|.+.|+..+.. -+.+...-..|...+.+.|+.++|.+.+..+.. .+..|.........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 899999999999999999988874 233445566677778888999999888888542 22344445555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC--------------------------------------------------CCC----
Q 044251 525 DGFAKQGQYLEARDVVSEFGKIG--------------------------------------------------LQP---- 550 (686)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~--------------------------------------------------~~p---- 550 (686)
+.+...|+.++=..+..+|+... ..+
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 56666666554333322221100 000
Q ss_pred -------CH----HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 551 -------TL----MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DS----VTYSTMIYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 551 -------~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 614 (686)
+. ..+.-++.++++.|++++|+.+...+....+.- +. ..-...+.++...+++..|..+++.|+
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 00 123456677888899999999988887643211 22 233455667788899999999999988
Q ss_pred HC-CCCCCH---HHHHHHHHHHHhhhhh-----------cchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCC
Q 044251 615 KS-GQVPDV---KSYEKLRSILDVKVAT-----------KNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRT 679 (686)
Q Consensus 615 ~~-g~~p~~---~~~~~l~~~l~a~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~ 679 (686)
.. +..-++ ..|+...+.+...... ...+.....+..+.+..-+..+....|+..+-++...+|++
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC
Confidence 65 322222 2333233332110000 00011111223333444456667789999999999999998
Q ss_pred cc
Q 044251 680 QS 681 (686)
Q Consensus 680 ~~ 681 (686)
|=
T Consensus 774 Pl 775 (895)
T KOG2076|consen 774 PL 775 (895)
T ss_pred cH
Confidence 84
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.3e-13 Score=145.87 Aligned_cols=302 Identities=14% Similarity=0.089 Sum_probs=186.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
.+.--+......++|..|+.+|..++...|... +....-+...+.+.|+.+.|+..|.+..+..+ .++.++-+|...-
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACK-ADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-CCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHH
Confidence 333445556677899999999999888765442 24444556677788999998888888887433 3444444444444
Q ss_pred HHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcC
Q 044251 246 FWCGR---YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVK--LSQEVVGALMKSFCDEG 320 (686)
Q Consensus 246 ~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g 320 (686)
....+ +..++.++...-..+ .-+++..+.|..-+.-.|+ +..++.+...++..... .-...|-.+.++|-..|
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD-YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 44433 445555555543332 3455667777777777776 88888888887765321 12345777888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM----QPEIVE 396 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~ 396 (686)
+++.|...|.+..+.....-+..+--|.++|.+.|+++.+...|+.+..... -+..|..+|...|+..+ ..+.|.
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 8888888887777664332245556677888888888888888888776532 24556666666666654 345555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHH----HcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHH
Q 044251 397 KLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMK----RVGIKPTSHSYTALIHAYSVGGWHEKAYAAFEN 472 (686)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (686)
.++....+.- ..|...|-.+...+-.. +. -.++.+|..+. ..+-.+.....|.+...+...|++++|...|..
T Consensus 401 ~~l~K~~~~~-~~d~~a~l~laql~e~~-d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 401 NVLGKVLEQT-PVDSEAWLELAQLLEQT-DP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHhc-Ch-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 5555555442 22455555555554443 22 12244443322 233334555666666666666666666666666
Q ss_pred HHH
Q 044251 473 MLR 475 (686)
Q Consensus 473 m~~ 475 (686)
.+.
T Consensus 478 A~~ 480 (1018)
T KOG2002|consen 478 ALG 480 (1018)
T ss_pred Hhh
Confidence 544
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=6.6e-14 Score=134.79 Aligned_cols=362 Identities=15% Similarity=0.116 Sum_probs=195.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGAL 312 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (686)
.+..+|..||.++++--..+.|.++|++..+...+.+..+||.+|.+-. +....+++.+|....+.||..|+|++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 3555666666666666666666666666665555666666666665543 22335566666666666666666666
Q ss_pred HHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----CCCC---C-CHHHH
Q 044251 313 MKSFCDEGLKNEA----LIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEE-AEGLFQEMKT----KGLK---P-TSATF 379 (686)
Q Consensus 313 i~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~---p-~~~~~ 379 (686)
+....+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++.. +.++ | |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 6666666655543 3556666666666666666666666666555433 3333333332 1111 1 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhh
Q 044251 380 NILMDAYSRRMQPEIVEKLLLELQDMG----LEPN---AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTA 452 (686)
Q Consensus 380 ~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~p~---~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 452 (686)
...+..|.+..+.+.|.++..-+.... +.|+ ...|..+....|..... +....+|+.|.-.-+-|+..+...
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~-~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI-DVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccceecCCchhHHH
Confidence 555566666666666666555443210 1111 22334444444444232 445555555555544555555555
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-C
Q 044251 453 LIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ-G 531 (686)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 531 (686)
++++..-.|.++-.-+++.+++..|..-+... .++++..+....+.|+...-..+-....++ -
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 56666666666665566655555432211111 122222222222222211111111111110 1
Q ss_pred CHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHH
Q 044251 532 QYLEARD-VVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI----KPDSVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 532 ~~~~A~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~~~~~li~~~~~~g~~~~A 606 (686)
++.++.+ --.++.+. .-.....+...-.+.+.|+.++|.++|.-....+- .|......-+++.-.+.++.-.|
T Consensus 503 d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1222222 12233333 33556677888888899999999999998865543 23444455677777888999999
Q ss_pred HHHHHHHHHCCC
Q 044251 607 FFYHKQMVKSGQ 618 (686)
Q Consensus 607 ~~~~~~m~~~g~ 618 (686)
...++.|...++
T Consensus 581 ~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 581 IEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHcCc
Confidence 999999977654
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.2e-13 Score=132.94 Aligned_cols=428 Identities=15% Similarity=0.201 Sum_probs=294.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc--cCChhH-HHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGR--ARMGDD-LMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
+-.++.+|.+.++.-+|+.|.+.+ ...++..-..+.+.-+- ..++-- -.+-|-.|...|. .+..+| +
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--------K 191 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--------K 191 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc--------c
Confidence 556677899999999999998764 34566666666554332 222221 2233444444333 344444 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALI 327 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (686)
.|+..+ ++-+.. +-...+|..||.++|+... .+.|.++|++......+.+..+||.+|.+-.- ....+
T Consensus 192 ~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~-~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~ 259 (625)
T KOG4422|consen 192 SGAVAD---LLFETL----PKTDETVSIMIAGLCKFSS-LERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKK 259 (625)
T ss_pred cccHHH---HHHhhc----CCCchhHHHHHHHHHHHHh-HHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHH
Confidence 344333 333332 4456799999999999987 99999999999988889999999999876543 33378
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 044251 328 IQMEMEKKGIPSNAIVYNTLINAYCKSNQLEE----AEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI-VEKLLLEL 402 (686)
Q Consensus 328 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m 402 (686)
++.+|......||..|+|+++.+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.+++.+ +..++.++
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 99999999999999999999999999998875 56788899999999999999999999999888754 45555555
Q ss_pred HHc----CCC---C-CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC----CCCC---hhhHhhhHHHHHhcCCHHHHH
Q 044251 403 QDM----GLE---P-NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG----IKPT---SHSYTALIHAYSVGGWHEKAY 467 (686)
Q Consensus 403 ~~~----~~~---p-~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~ 467 (686)
+.. .+. | |...|...+..|.+..+. +.|..+..-+.... +.|+ ..-|..+....|+....+.-+
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~-~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDL-ELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhH-HHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 222 3 566677788888766554 66766665544321 1122 334667777888888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 468 AAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
..|+.|.-.-+-|+..+...++++..-.+.++-.-++|..++..|...+... -++++..+.+..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k 482 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDK 482 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCC
Confidence 9999998887889999999999999999999999999999987764333222 223333333333
Q ss_pred CCCCHH---HHHHHHHHHHhcCCccHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH
Q 044251 548 LQPTLM---TYNMLMNAYGRGGQTSKLP-QLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG-QVPDV 622 (686)
Q Consensus 548 ~~p~~~---~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 622 (686)
+.|+.. -+..+..-|+ -++.++. ..-.+|.+..+ .....+..+-.+.+.|..++|.+++....+.+ -.|-.
T Consensus 483 ~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~ 558 (625)
T KOG4422|consen 483 LHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRS 558 (625)
T ss_pred CCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCC
Confidence 333322 2222222221 1122222 22345554433 45567777788899999999999999997664 45666
Q ss_pred HHHHHHHHHHHhhhhhcch
Q 044251 623 KSYEKLRSILDVKVATKNR 641 (686)
Q Consensus 623 ~~~~~l~~~l~a~~~~~~~ 641 (686)
...+.++++.++....++.
T Consensus 559 p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 559 PLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred cchhhHHHHHHHHHhcCCH
Confidence 7777788888765555443
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=4.3e-11 Score=121.54 Aligned_cols=428 Identities=12% Similarity=0.038 Sum_probs=275.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAW 255 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (686)
.....+.|..++.++.+--|... + |..+|++..-++.|.+++++..+ ..+-+..+|.+....--.+|+.+...
T Consensus 388 elE~~~darilL~rAveccp~s~--d----LwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQSM--D----LWLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred hccChHHHHHHHHHHHHhccchH--H----HHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 33455668888888877654332 3 33455666677788888888776 45567888888888888888888887
Q ss_pred HHHHHH----HhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 256 KAYEAM----EANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS--QEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 256 ~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
+++.+- ...|+..+...|-.-...|-..|- .-.+..+....+..|+.-. ..||..-...|.+.+.++-|..+|
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags-v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGS-VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC-hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 776653 445777777777777777777765 6667777777776665432 346777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 330 MEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 409 (686)
...++. ++-+...|...+..--..|..++...+|++.... ++-....|-....-+-..|+...|..++....+....
T Consensus 540 a~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 540 AHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 777765 4446666766666666667777777777777665 2224445555555556667777777777776665332
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALL 489 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 489 (686)
+...+...+......... +.|..+|.+.... .++...|.--+....-.+..++|+.++++.++. ++.-...|-.+.
T Consensus 617 seeiwlaavKle~en~e~-eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDEL-ERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLG 692 (913)
T ss_pred cHHHHHHHHHHhhccccH-HHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHh
Confidence 455555556655555444 6677777666654 345555555555555566677777777766663 222234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 569 (686)
+.+.+.++.+.|...|..-.+. ++.....|-.|.+.-.+.|.+-.|..++++..-.+ +.+...|-..|..-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHH
Confidence 6666777777777666655533 35555566666666666667777777777665444 336666666666666777766
Q ss_pred HHHHHHHHHHHC-----------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044251 570 KLPQLLKEMATL-----------------------------NIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVP 620 (686)
Q Consensus 570 ~A~~l~~~m~~~-----------------------------g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 620 (686)
.|..+..++++. .+.-|+.+...+...++...+++.|.+.|.++++.+ |
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~ 848 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--P 848 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--C
Confidence 666665555432 123355666667777777778888888888887754 5
Q ss_pred CH
Q 044251 621 DV 622 (686)
Q Consensus 621 ~~ 622 (686)
|.
T Consensus 849 d~ 850 (913)
T KOG0495|consen 849 DN 850 (913)
T ss_pred cc
Confidence 44
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=5.4e-11 Score=120.87 Aligned_cols=475 Identities=11% Similarity=0.024 Sum_probs=362.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYE 259 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (686)
...-.++++.+++.-|... ..|...+ .....+.|+.++.+..+ -++.+...|.+ |++..-|+.|.++++
T Consensus 362 ~~~K~RVlRKALe~iP~sv--~LWKaAV----elE~~~darilL~rAve-ccp~s~dLwlA----larLetYenAkkvLN 430 (913)
T KOG0495|consen 362 TKNKKRVLRKALEHIPRSV--RLWKAAV----ELEEPEDARILLERAVE-CCPQSMDLWLA----LARLETYENAKKVLN 430 (913)
T ss_pred HHHHHHHHHHHHHhCCchH--HHHHHHH----hccChHHHHHHHHHHHH-hccchHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444568888888877543 5554443 45666679999888776 34345666655 455567899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 260 AMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMN----RKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 260 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
..++. ++.+...|.+....--.+|. .+....++.+-+ ..|+..+...|..=...|-..|..--+..+....+..
T Consensus 431 kaRe~-iptd~~IWitaa~LEE~ngn-~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi 508 (913)
T KOG0495|consen 431 KAREI-IPTDREIWITAAKLEEANGN-VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI 508 (913)
T ss_pred HHHhh-CCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh
Confidence 99875 56788889888877778887 888888887654 4689999999999999999999999999999999888
Q ss_pred CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 044251 336 GIPS--NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKS 413 (686)
Q Consensus 336 g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 413 (686)
|+.- -..+|+.-...|.+.+.++-|..+|...++.-. -+...|......--..|..+....+|+++...-. -....
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~l 586 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEIL 586 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhH
Confidence 7653 346889999999999999999999999888633 3667788777777788999999999999987622 23445
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044251 414 YTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFR 493 (686)
Q Consensus 414 ~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 493 (686)
+......+-..|+. ..|..++...-+..+. +...|-+-+.....+.+++.|..+|.+... ..|+...|.--+..-.
T Consensus 587 wlM~ake~w~agdv-~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDV-PAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHHhcCCc-HHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHH
Confidence 55555566667777 6799999999888655 778899999999999999999999999887 5678888877777778
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 494 RSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 494 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
..++.++|.+++++.++.- +.-...|..+...+-..++++.|...|..-.+. ++-.+-.|-.|...--+.|.+-.|..
T Consensus 663 ~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHH
Confidence 8899999999999998764 666788999999999999999999999876544 24456778888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----------Hhhhhhcchhh
Q 044251 574 LLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL----------DVKVATKNRRD 643 (686)
Q Consensus 574 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l----------~a~~~~~~~~~ 643 (686)
+|++..-++ +-|...|...|..=.+.|+.+.|..+..++++.- ..+...|..-+.+. +|......
T Consensus 741 ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkkce~--- 815 (913)
T KOG0495|consen 741 ILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--- 815 (913)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHhccC---
Confidence 999998764 3378899999999999999999999999988752 22334444444333 11111111
Q ss_pred hHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCcc
Q 044251 644 KSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQS 681 (686)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~ 681 (686)
...++-.+ +++.-...+.++|++-|.++.+..||+-|
T Consensus 816 dphVllai-a~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 816 DPHVLLAI-AKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred CchhHHHH-HHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 11111112 12222344667888888899888887755
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=8.6e-13 Score=127.87 Aligned_cols=431 Identities=13% Similarity=0.064 Sum_probs=296.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 170 LLELMANDGLLGCCLYFYEWMRLQEPSLVS---PRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 170 l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
+...+.+.+.+..|+++|+.++.+.|.... ....+.+...+.+.|+++.|+..|+...+.. |+..+--.|+-++.
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAF 320 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhhe
Confidence 345566777899999999999999776532 2344455556889999999999999876532 77766666777777
Q ss_pred HcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHH-----HHHHHcCC-CHHHHHHHHHHHHHCCCCCCHH-
Q 044251 247 WCGRYDDAWKAYEAMEANNVR------------PDHVTCSIMI-----TAMRKNGR-SAKEAWEFFEKMNRKGVKLSQE- 307 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~------------p~~~~~~~ll-----~~~~~~g~-~~~~a~~~~~~m~~~~~~~~~~- 307 (686)
..|+-++..+.|.+|...-.. |+....+..| .-+-+..+ ..+.++-.-.+++.--+.|+-.
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 889999999999999864222 3333333222 22222221 0122222222222211222211
Q ss_pred ------------HH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 044251 308 ------------VV--------GALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK--SNQLEEAEGLFQ 365 (686)
Q Consensus 308 ------------~~--------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~ 365 (686)
.+ ..-...+.+.|+++.|.+++.-+.+..-+.-...-+.|-..+.- -.++..|.++-+
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 01 11224577899999999999988877444333334444433333 346777877776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC
Q 044251 366 EMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKP 445 (686)
Q Consensus 366 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~ 445 (686)
..+... .-+......-.+.....|++++|.+.|++.+...-.-....|+.-+. +-..|++ ++|++.|-++...- ..
T Consensus 481 ~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt-~e~~~~l-deald~f~klh~il-~n 556 (840)
T KOG2003|consen 481 IALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEALGNL-DEALDCFLKLHAIL-LN 556 (840)
T ss_pred HHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHHhcCH-HHHHHHHHHHHHHH-Hh
Confidence 665432 11333333344455568999999999999986533223333443332 3344566 88999998875432 22
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
+..+...+...|-...+...|++++.+.... ++.|+..+..|...|-+.|+-..|.+.+-.-.+. ++.+..+...|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHH
Confidence 6777778889999999999999999888765 6778899999999999999999999988776543 4778899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYG-RGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFK 604 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 604 (686)
.|....-+++|+.+|++..- +.|+..-|..|+..|. +.|++.+|.++++...++ ++-|...+.-|++.|...|- .
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~ 710 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-K 710 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-h
Confidence 99999999999999998653 5899999999987765 689999999999999874 56688888888888877774 3
Q ss_pred HHHHHHHH
Q 044251 605 RAFFYHKQ 612 (686)
Q Consensus 605 ~A~~~~~~ 612 (686)
++.++-++
T Consensus 711 d~key~~k 718 (840)
T KOG2003|consen 711 DAKEYADK 718 (840)
T ss_pred hHHHHHHH
Confidence 34444333
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.9e-12 Score=120.79 Aligned_cols=310 Identities=15% Similarity=0.110 Sum_probs=223.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcCCCChHHH
Q 044251 354 SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNA---KSYTCLISAYGRPRKMSDM 430 (686)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~~ 430 (686)
.++.++|.++|-+|.+.... +..+--+|.+.|.+.|..+.|+++.+.+.+..-.+.. ...-.|..-|... ++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~a-Gl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAA-GLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh-hhhhH
Confidence 56778888888888775322 3345556788888888888888888887764222211 1222334445666 44588
Q ss_pred HHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 431 AADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI----ETYTALLDAFRRSGDTGMMMKIWK 506 (686)
Q Consensus 431 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~ 506 (686)
|+.+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+..+.. ..|+-+...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 88888888764322 3456777888999999999999999988886554432 567788888888899999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 507 LMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 507 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
+..+.+ +..+.+--.+.+.+...|++..|.+.++.+.+.+..--..+...|..+|...|+.++....+.++.+. .++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCC
Confidence 999876 45555666778888899999999999999988765555778899999999999999999999999875 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhh----hhcchhhhHHHHHHHH--hcccchhh
Q 044251 587 SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKV----ATKNRRDKSAILGIIN--SKMGMVKA 660 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~----~~~~~~~~~~~~~~~~--~~~~~~~~ 660 (686)
...-..+...-....-.+.|..++.+-++. .|+...+..+++.--+.. ...+......+++... +.++.|..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 444555555445555567777777666654 499998888888753322 2333344444544432 34588999
Q ss_pred cccchhHHHHH
Q 044251 661 KKKGKKDEFWK 671 (686)
Q Consensus 661 ~~~~a~~~f~~ 671 (686)
||..+..+||.
T Consensus 360 CGF~a~~l~W~ 370 (389)
T COG2956 360 CGFTAHTLYWH 370 (389)
T ss_pred cCCcceeeeee
Confidence 99999999985
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.5e-11 Score=115.06 Aligned_cols=364 Identities=12% Similarity=0.075 Sum_probs=201.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HH-HHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS-QE-VVG 310 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~-~~-~~~ 310 (686)
.|...+-.....+.+.|....|.+.|......- +-.-.+|.-|...+. . .+.+ ..... +...+ .. .=-
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~-~e~~----~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---D-IEIL----SILVV-GLPSDMHWMKKF 231 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---h-HHHH----HHHHh-cCcccchHHHHH
Confidence 455555556666667777777777777766531 222233333332221 1 2111 11111 11111 11 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHh
Q 044251 311 ALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK--PTSATFNILMDAYSR 388 (686)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~ 388 (686)
.+..++-...+.+++.+-.......|.+.+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-+-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 233455555566777777777777777666655555556666677777777777777765311 145566655544222
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHH
Q 044251 389 RMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYA 468 (686)
Q Consensus 389 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 468 (686)
... +.++.+-.-.--+--+.|...+.+-|+-.+.. ++|...|++..+.++. ....|+.+.+-|....+...|++
T Consensus 312 ~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eH-EKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEH-EKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhH-HHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 111 11111111000011233444444444444333 6677777777666544 45667777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 044251 469 AFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL 548 (686)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 548 (686)
.|+..++- .+-|-..|..+.++|.-.+...-|+-.|++..... +.|..+|.+|.++|.+.+++++|++.|.+....|
T Consensus 386 sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 77776663 23355667777777777777777777777776655 5566777777777777777777777777766665
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT----LNIKPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
..+...|..|...|-+.++.++|...+++.++ .|..-+ ..+..-|..-+.+.+++++|..+......
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 33556667777777777777777766665543 222222 12222244455666777777666655543
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=4.2e-11 Score=126.50 Aligned_cols=327 Identities=10% Similarity=0.074 Sum_probs=205.0
Q ss_pred HHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHH
Q 044251 209 VLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAK 288 (686)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 288 (686)
.+...|++++|.+++.++....+ .+...|..|...|-+.|+.++++..+-..-..+ +-|...|..+.....+.|. +.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~-i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN-IN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc-HH
Confidence 34455999999999999887443 788999999999999999999988766554432 4567889999888889998 99
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHHcCCHHHHHHHH
Q 044251 289 EAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNT----LINAYCKSNQLEEAEGLF 364 (686)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~ 364 (686)
.|.-.|.++++..+ ++...+---+..|-+.|+...|..-|.++.....+.|..-... .++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999864 3566666677889999999999999999998854334333333 455667778889999998
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---------------------------HH
Q 044251 365 QEMKTK-GLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSY---------------------------TC 416 (686)
Q Consensus 365 ~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---------------------------~~ 416 (686)
+..... +-..+...+++++..+.+...++.+......+......+|..-+ ..
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 887763 22335567888999999999999999888887763333333222 11
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcC--CCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044251 417 LISAYGRPRKMSDMAADAFLRMKRVG--IKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRR 494 (686)
Q Consensus 417 ll~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 494 (686)
.+. +.+.... +....+........ +.-+...|.-+..+|.+.|.+.+|+.+|..+......-+...|..+..+|..
T Consensus 384 ~ic-L~~L~~~-e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 384 MIC-LVHLKER-ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hhh-hhccccc-chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 111 1111000 11111122222222 2223344444555555555555555555555443333334445555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 495 SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSE 542 (686)
Q Consensus 495 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 542 (686)
.|.++.|.+.|+.++... +.+..+--.|...+.+.|+.++|.+.+..
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 555555555555554443 33333444444444455555555555544
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1e-09 Score=107.76 Aligned_cols=453 Identities=9% Similarity=0.003 Sum_probs=322.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
+....+...+..=..++++..|..+|++++..+.... ..|..-+.+=.+...+..|+.++++.... .|.--..|-..
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~i--tLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNI--TLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccc--hHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHH
Confidence 3444555555566677888999999999998764433 67777777888899999999999987763 33445667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
+-+=-..|+...|.++|+.-.+- .|+..+|++.|.--.+... .+.|..+|++.+- +.|+..+|.-..+.-.+.|.
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRyke-ieraR~IYerfV~--~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKE-IERARSIYERFVL--VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhH-HHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCc
Confidence 77777789999999999998876 8999999999998888877 8999999999886 45899999999999999999
Q ss_pred HHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 044251 322 KNEALIIQMEMEKK-GI-PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT-SATFNILMDAYSRRMQPEIVEKL 398 (686)
Q Consensus 322 ~~~A~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 398 (686)
+..|..+|....+. |- ..+...+.+....-.++..++.|.-+|+-.++.=.+-. ...|......--+-|+.......
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 99999999988765 11 11233455555555567788999999988877522211 33455555444455655443332
Q ss_pred --------HHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-hhhHhhhH--------HHHHhcC
Q 044251 399 --------LLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT-SHSYTALI--------HAYSVGG 461 (686)
Q Consensus 399 --------~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li--------~~~~~~g 461 (686)
|+.+...+ .-|-.++--.+......|+. +...++|++....-+... -..|..-| -.-....
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~-~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDK-DRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCH-HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22233322 23556666666666666665 788999998876432211 11122111 1123467
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 462 WHEKAYAAFENMLREEIKPSIETYTALLDAF----RRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEAR 537 (686)
Q Consensus 462 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 537 (686)
+.+.+.++|+..++. ++-...||.-+--.| .+..++..|.+++...+ |.-|-..++-..|..-.+.+++|.+.
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 888999999999884 555556665554444 46678999999998886 55778888999999989999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 538 DVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI-KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 538 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.++++.+..+ +-|..+|......-...|+.+.|..+|.-++.... ......|-+.|.-=...|.++.|..+++++++.
T Consensus 458 kLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 458 KLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999999887 44888898888888889999999999998886321 112345556666557789999999999999876
Q ss_pred CCCCCHHHHHHHHH
Q 044251 617 GQVPDVKSYEKLRS 630 (686)
Q Consensus 617 g~~p~~~~~~~l~~ 630 (686)
. +...++-....
T Consensus 537 t--~h~kvWisFA~ 548 (677)
T KOG1915|consen 537 T--QHVKVWISFAK 548 (677)
T ss_pred c--ccchHHHhHHH
Confidence 4 44445544443
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2e-10 Score=112.47 Aligned_cols=379 Identities=12% Similarity=0.067 Sum_probs=263.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH-HH
Q 044251 199 SPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRP-DHVTCS-IM 276 (686)
Q Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~-~l 276 (686)
++..+-..+.++.+.|....|+..|..... .. +..|.+.+....-..+.+.+.. +... .+. +..... .+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-~~---P~~W~AWleL~~lit~~e~~~~----l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVN-RY---PWFWSAWLELSELITDIEILSI----LVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHh-cC---CcchHHHHHHHHhhchHHHHHH----HHhc-CcccchHHHHHHH
Confidence 445556667778888999999999988765 22 3345444444333333333322 2221 122 222222 23
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHc
Q 044251 277 ITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGI--PSNAIVYNTLINAYCKS 354 (686)
Q Consensus 277 l~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~ 354 (686)
..++..... .+++++-.+.....|.+.+...-+....+.....+++.|..+|+++.+..+ -.|..+|..++..--.+
T Consensus 234 ~~a~~el~q-~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQ-HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 345555554 788888888999999887777777777788889999999999999998832 12667787776443222
Q ss_pred CCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHH
Q 044251 355 NQLEE-AEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAAD 433 (686)
Q Consensus 355 g~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~ 433 (686)
..+.- |..+++ -... -..|..++.+-|+-.++.++|..+|++.++.+.. ....++.+-.-|....+. ..|.+
T Consensus 313 skLs~LA~~v~~---idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt-~AAi~ 385 (559)
T KOG1155|consen 313 SKLSYLAQNVSN---IDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNT-HAAIE 385 (559)
T ss_pred HHHHHHHHHHHH---hccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhccc-HHHHH
Confidence 22111 122211 1123 3347778889999999999999999999886422 345666666778777666 78999
Q ss_pred HHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044251 434 AFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV 513 (686)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 513 (686)
.|+...+..+. |-..|-.|.++|.-.+.+.-|+-.|++.... .+-|...|.+|.++|.+.++.++|++.|...+..+
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 99999998765 8899999999999999999999999999885 34477999999999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCHHHH---HHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGK----IGLQPTLMTY---NMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
..+...+..|.+.|-+.++..+|...|.+.++ .|.. +..|. --|..-+.+.+++++|..+...... |
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~---- 536 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G---- 536 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C----
Confidence 55778999999999999999999999988654 2322 22222 2244445566666666655444332 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 587 SVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.-..++|..++++..+.
T Consensus 537 -------------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 -------------ETECEEAKALLREIRKI 553 (559)
T ss_pred -------------CchHHHHHHHHHHHHHh
Confidence 23346667777666543
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=2.6e-11 Score=127.22 Aligned_cols=295 Identities=12% Similarity=0.044 Sum_probs=183.8
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 282 KNGRSAKEAWEFFEKMNRKGVKLS-QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
..|+ ++.|.+.+.+..+.. |+ ...+.....+....|+.+.|.+.+....+....+...........+...|+++.|
T Consensus 96 ~~g~-~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGD-YAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCC-HHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4565 888888887776653 33 3334445667777788888888888877653332333444457777778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhcCCCChHHHHHHHHHHHH
Q 044251 361 EGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYT-CLISAYGRPRKMSDMAADAFLRMK 439 (686)
Q Consensus 361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~~A~~~~~~~~ 439 (686)
...++.+.+..+. +...+..+..++...|+++.|.+++..+.+.+.. +...+. ....++
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------ 232 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------ 232 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH------------------
Confidence 8888888877543 5566777888888888888888888888776533 222221 111111
Q ss_pred HcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 044251 440 RVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREE---IKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT 516 (686)
Q Consensus 440 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 516 (686)
..+...+..+++.+.+..+.... .+.+...+..+...+...|+.+.|.+++++.++......
T Consensus 233 ---------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 233 ---------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred ---------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 00011111122222333333221 112555666666666666666666666666665542221
Q ss_pred HHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 517 RVTF-NILLDGFAKQGQYLEARDVVSEFGKIGLQPTL--MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTM 593 (686)
Q Consensus 517 ~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 593 (686)
...+ ..........++.+.+.+.++...+.. +-|+ ....++.+.|.+.|++++|.+.|+........||...+..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 1111 111111223466777888888877654 3355 67778999999999999999999954443457888888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 044251 594 IYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 594 i~~~~~~g~~~~A~~~~~~m~~ 615 (686)
...+.+.|+.++|.++|++.+.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=2.2e-11 Score=127.72 Aligned_cols=295 Identities=16% Similarity=0.101 Sum_probs=208.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHV-TCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
....|+++.|.+.+....+. .|+.. .+-....+....|+ .+.|.+++.++.+....+...........+...|+++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~-~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGD-EARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 35689999999999988776 45543 34444566677787 9999999999987643333345555688899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD-AYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~m 402 (686)
.|...++.+.+.. |-+..++..+...+.+.|++++|.+++..+.+.+.. +...+..+-. ++ . ..+...
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~--~-------~~l~~~ 239 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE--I-------GLLDEA 239 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--H-------HHHHHH
Confidence 9999999999986 447788999999999999999999999999998654 3333321111 11 0 001110
Q ss_pred HHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC---CCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 403 QDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI---KPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK 479 (686)
Q Consensus 403 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 479 (686)
.. +...+.+..+....+ +.+...+..++..+...|+.++|..++++..+..
T Consensus 240 ~~------------------------~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-- 293 (409)
T TIGR00540 240 MA------------------------DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-- 293 (409)
T ss_pred HH------------------------hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--
Confidence 00 011112222222211 1267778888888999999999999999988853
Q ss_pred CCHHH-HHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044251 480 PSIET-YTALLDAF--RRSGDTGMMMKIWKLMMSEKVEGTR--VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMT 554 (686)
Q Consensus 480 p~~~~-~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 554 (686)
|+... ...++..+ ...++.+.+.+.++...+.. +.+. ....++...|.+.|++++|.+.|+........|+...
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 33321 00122222 33477788888888887664 5556 7778899999999999999999996444445788888
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 555 YNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 555 ~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
+..+...+.+.|+.++|.+++++...
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998653
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2e-10 Score=113.21 Aligned_cols=423 Identities=12% Similarity=0.038 Sum_probs=264.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC 248 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (686)
...+.+.++|.|++|+++|.|++...|.. +..|.....+|...|+++++.+--.+..+..+ .-+.++.--..++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~e--piFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDE--PIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCC--chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHHhh
Confidence 44667788999999999999999997764 47889999999999999999888877776432 4466777778888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 044251 249 GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKG--VKLSQEVVGALMKSFCDEGLKNEAL 326 (686)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~ 326 (686)
|++++|+.=..-..-.+.-.|..+--.+=+.+-+.++ ..+.+.+. +.+ +-|+.....+....+...-.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~--~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~----- 266 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM--KKAKEKLK---ENRPPVLPSATFIASYFGSFHADPK----- 266 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH--HHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccc-----
Confidence 9999886533332211112222222222222222221 22222222 122 34454444444443322100
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHHHhcCCHH
Q 044251 327 IIQMEMEKKGIPSNAIVYNTLINAYCK-SNQLEEAEGLFQEMKTK---GLKPT---------SATFNILMDAYSRRMQPE 393 (686)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~---g~~p~---------~~~~~~ll~~~~~~~~~~ 393 (686)
..+...+.+.|...-..+=..+.. ...+..|.+.+.+-... ....+ ..+.......+.-.|+.-
T Consensus 267 ---~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 267 ---PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred ---ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 000000111111111111111111 11334444433322110 01111 122222223334567888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHH
Q 044251 394 IVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENM 473 (686)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 473 (686)
.+..-|+..++....++. .|--+..+|....+. ++....|......++. +..+|..-...+.-.+++++|..=|++.
T Consensus 344 ~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~-~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQS-EKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhHHHHHhcCcccch-HHHHHHHHHhhhhcc-HHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888876544333 255555567766554 7788999998888765 7778888888888889999999999999
Q ss_pred HHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---
Q 044251 474 LREEIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ--- 549 (686)
Q Consensus 474 ~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--- 549 (686)
+.. .| +...|--+.-+.-+.+.++.++..|++.++. +|..+.+|+.....+...++++.|.+.|+..+.+...
T Consensus 421 i~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 421 ISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred hhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 874 34 3355555555556888999999999999865 4778889999999999999999999999998765422
Q ss_pred --CCHHH--HHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 550 --PTLMT--YNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 550 --p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.++.. --.++..- -.+++..|+++++++.+. .| ....|..|...-.+.|+.++|+++|++....
T Consensus 498 ~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12222 22222222 238899999999999864 45 3567888998899999999999999987643
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=5.1e-14 Score=140.19 Aligned_cols=262 Identities=15% Similarity=0.113 Sum_probs=108.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 044251 346 TLINAYCKSNQLEEAEGLFQEMKTKG-LKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRP 424 (686)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 424 (686)
.+...+.+.|++++|+++++...... ..-+...|..+...+...++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666667777777777775543332 1223344455555666677777777777777655432 44445555555 344
Q ss_pred CChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 425 RKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREE-IKPSIETYTALLDAFRRSGDTGMMMK 503 (686)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~ 503 (686)
++. ++|..++....+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++
T Consensus 91 ~~~-~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDP-EEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccc-cccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444 66777766654432 355666777788888899999998888876542 34567778888888889999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 504 IWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
++++.++.. |.+..+.+.++..+...|+.+++..+++...+.. +.|+..+..+..+|...|+.++|+.+|++.....
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 999998876 5577888888888888999998888888877654 4566778889999999999999999999988742
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 584 KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 584 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
+.|+.+...+..++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 33788888999999999999999998887754
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=6e-11 Score=123.70 Aligned_cols=292 Identities=12% Similarity=0.045 Sum_probs=173.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 283 NGRSAKEAWEFFEKMNRKGVKLSQEV-VGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAE 361 (686)
Q Consensus 283 ~g~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 361 (686)
.|+ ++.|.+.+....+.. .++.. |........+.|+++.|.+.+.++.+................+...|+++.|.
T Consensus 97 eGd-~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGD-YQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCC-HHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 355 777776666554432 12222 33334444677777777777777766422211122223355666777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc
Q 044251 362 GLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV 441 (686)
Q Consensus 362 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~ 441 (686)
..++.+.+.... +...+..+..+|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------
Confidence 777777766533 4556666777777777777777777777665433211 111000
Q ss_pred CCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 044251 442 GIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFN 521 (686)
Q Consensus 442 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 521 (686)
..+|..++.......+.+....+++.+-+. .+.+......+...+...|+.+.|.+++++..+. +++....
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~- 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV- 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-
Confidence 001111122222222334444444444322 3446666677777777777777777777777663 3343221
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 044251 522 ILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVR 601 (686)
Q Consensus 522 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 601 (686)
++.+....++.+++.+.++...+.. +-|+..+..+...|.+.|++++|.+.|+.+.+ ..|+..++..+..++.+.|
T Consensus 300 -~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 300 -LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLH 375 (398)
T ss_pred -HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcC
Confidence 2333344577788888887777654 34667777788888888888888888888875 3678777777888888888
Q ss_pred CHHHHHHHHHHHHH
Q 044251 602 DFKRAFFYHKQMVK 615 (686)
Q Consensus 602 ~~~~A~~~~~~m~~ 615 (686)
+.++|.+++++.+.
T Consensus 376 ~~~~A~~~~~~~l~ 389 (398)
T PRK10747 376 KPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888877654
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=1.8e-10 Score=120.17 Aligned_cols=291 Identities=13% Similarity=0.092 Sum_probs=188.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044251 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIM-ITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEAL 326 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (686)
.|++++|.+.+....+. .++...+..+ ..+....|+ ++.|.+++.++.+................+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g~-~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRGD-EARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 69999999888876654 2233333333 333366777 9999999999987543222223234467889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHc
Q 044251 327 IIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILM-DAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
..++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..+ ......+- .++. .++.....
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~---------~l~~~~~~- 241 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAWI---------GLMDQAMA- 241 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH---------HHHHHHHH-
Confidence 9999999886 4478889999999999999999999999999876542 22222111 1110 00111100
Q ss_pred CCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044251 406 GLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETY 485 (686)
Q Consensus 406 ~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 485 (686)
..+. +....+++.+...- +.+......+...+...|+.++|..++++..+. .++....
T Consensus 242 ------------------~~~~-~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~ 299 (398)
T PRK10747 242 ------------------DQGS-EGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV 299 (398)
T ss_pred ------------------hcCH-HHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 0011 22233333322211 225556666777777777777777777777763 3444222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044251 486 TALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG 565 (686)
Q Consensus 486 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 565 (686)
++.+....++.+.+.+..+...+.. +.|...+..+...|.+.+++++|.+.|+.+.+. .|+...|..|..++.+.
T Consensus 300 --~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 300 --LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRL 374 (398)
T ss_pred --HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc
Confidence 1222234477777777777777655 566677777777778888888888888877664 56777777777888888
Q ss_pred CCccHHHHHHHHHHH
Q 044251 566 GQTSKLPQLLKEMAT 580 (686)
Q Consensus 566 g~~~~A~~l~~~m~~ 580 (686)
|+.++|.+++++...
T Consensus 375 g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 375 HKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888887777653
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=8.9e-12 Score=127.60 Aligned_cols=282 Identities=14% Similarity=0.119 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGL--KPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
..+|..+|..+... ...+..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+.-+-+ +-++.++
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 34556666664433 232445555666666677777777777766665421 1144556655554322 1122222
Q ss_pred HH-HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 400 LE-LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI 478 (686)
Q Consensus 400 ~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 478 (686)
.+ +.+. -+-.+.+|.++-.+|.-.++. +.|++.|++..+.++. ...+|+.+..-+.....+|.|...|+..+. +
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh-~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDH-DTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHH-HHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 21 2221 133566777777777766554 6777777777765432 567777777777777788888888887765 3
Q ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044251 479 KPSI-ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNM 557 (686)
Q Consensus 479 ~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 557 (686)
.|.. ..|..+...|.+.++++.|+-.|+++++.+ +.+.+....+...+.+.|+.++|+.+++++..... .|+..--.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYH 562 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHH
Confidence 3332 566677778888888888888888888776 56777777778888888888888888888887763 36666556
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 558 LMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 558 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
.+..+...++.++|+..|+++++ +.|+ ..+|..++..|.+.|+.+.|+.-|.-|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 67777888888899998888886 3554 6677888888888898888888888777644
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.3e-08 Score=98.49 Aligned_cols=437 Identities=9% Similarity=0.002 Sum_probs=321.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+...+...+..=.+...+..|.-+++++...-|-.. ..|..-+.+=-..|++..|+++|++-.. ..|+..+|++.|
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd--qlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI 181 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD--QLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFI 181 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH--HHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHH
Confidence 556677778888888899999999999988755332 5565556666678999999999998765 459999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK-G-VKLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~-~-~~~~~~~~~~li~~~~~~g 320 (686)
+.=.+-+.++.|..+|+...-. .|++.+|.....---+.|. ...+..+|+.+.+. | -..+...+.+....-.++.
T Consensus 182 ~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~-~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 182 KFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN-VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQK 258 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999865 7999999988888888887 99999999988764 2 1112345566666666788
Q ss_pred CHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044251 321 LKNEALIIQMEMEKKGIPSN--AIVYNTLINAYCKSNQLEEAEGL--------FQEMKTKGLKPTSATFNILMDAYSRRM 390 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~g~~p~~~~~~~ll~~~~~~~ 390 (686)
.++.|.-+|.-.+.. ++.+ ...|..+...--+-|+.....+. |+.++..+. .|-.+|-..+..-...|
T Consensus 259 E~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 259 EYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcC
Confidence 899999999988887 4434 45666666665666775554443 345555433 37778888888888899
Q ss_pred CHHHHHHHHHHHHHcCCCC-CH-HHHHHHHH-----Hh---cCCCChHHHHHHHHHHHHHcCCCCChhhHhh----hHHH
Q 044251 391 QPEIVEKLLLELQDMGLEP-NA-KSYTCLIS-----AY---GRPRKMSDMAADAFLRMKRVGIKPTSHSYTA----LIHA 456 (686)
Q Consensus 391 ~~~~a~~~~~~m~~~~~~p-~~-~~~~~ll~-----~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~ 456 (686)
+.+...++|+.....- .| .. ..+.-.|. ++ ....+. +.+.++|+...+.- .....|+.- ....
T Consensus 337 ~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~-ertr~vyq~~l~lI-PHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 337 DKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDV-ERTRQVYQACLDLI-PHKKFTFAKIWLMYAQF 413 (677)
T ss_pred CHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhhc-CcccchHHHHHHHHHHH
Confidence 9999999999998652 33 11 11111111 11 112233 77889998888742 223344433 3344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 457 YSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEA 536 (686)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 536 (686)
..+..++..|..++...+. .-|-..+|...|..=.+.++++.+..+|++.++-+ |-+..+|......-...|+.+.|
T Consensus 414 eIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHH
Confidence 4567888999999987764 67888999999999999999999999999999988 67888999988888899999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----HcC---------
Q 044251 537 RDVVSEFGKIG-LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFV-----RVR--------- 601 (686)
Q Consensus 537 ~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~-----~~g--------- 601 (686)
..+|.-+++.. +..-...|...|.--...|.++.|..+++++++. .+-..+|.++..--. +.|
T Consensus 491 RaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~ 568 (677)
T KOG1915|consen 491 RAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEIT 568 (677)
T ss_pred HHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcc
Confidence 99999987632 1122445666666667899999999999999975 334445655543222 233
Q ss_pred --CHHHHHHHHHHHHHC
Q 044251 602 --DFKRAFFYHKQMVKS 616 (686)
Q Consensus 602 --~~~~A~~~~~~m~~~ 616 (686)
....|..+|+++...
T Consensus 569 ~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 569 DENIKRARKIFERANTY 585 (677)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 566788888877644
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1e-13 Score=137.99 Aligned_cols=261 Identities=15% Similarity=0.188 Sum_probs=98.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 311 ALMKSFCDEGLKNEALIIQMEMEKKG-IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRR 389 (686)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 389 (686)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666667777777777775544433 2335555555666666677777777777777765433 44455556555 577
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC-CCCChhhHhhhHHHHHhcCCHHHHHH
Q 044251 390 MQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG-IKPTSHSYTALIHAYSVGGWHEKAYA 468 (686)
Q Consensus 390 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~ 468 (686)
+++++|.+++....+. .++...+...+..+...++. +.+..+++.+.... ...+...|..+...+.+.|+.++|+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDY-DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -----------------------------H-HHHTT-H-HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHH-HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777665443 24455556666666666555 66777777765432 23466677778888888888888888
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 469 AFENMLREEIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 469 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
++++.++. .| |......++..+...|+.+++.+++....+.. +.+...+..+..+|...|+.++|...+++..+..
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 88888874 34 46677778888888888888888877777654 5555677788888888888888888888887765
Q ss_pred CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 548 LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 548 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
+.|+.....+..++...|+.++|.++.+++..
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -TT-HHHHHHHHHHHT-----------------
T ss_pred -cccccccccccccccccccccccccccccccc
Confidence 44788888888888888888888888777653
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.8e-11 Score=125.42 Aligned_cols=283 Identities=13% Similarity=0.113 Sum_probs=157.7
Q ss_pred hhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCCHHHHH
Q 044251 216 GDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRP----DHVTCSIMITAMRKNGRSAKEAW 291 (686)
Q Consensus 216 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~~a~ 291 (686)
..+|+.+|.+++. .+..+..+...+..+|...+++++|.++|+.++.. .| +...|.+.+.-+.+ +-++
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~-----~v~L 406 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQD-----EVAL 406 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHh-----hHHH
Confidence 3477777877555 34355567777778888888888888888887665 23 44566666654432 2233
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 292 EFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG 371 (686)
Q Consensus 292 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (686)
..+.+-+-.--+-.+.+|.++...|.-+++.+.|++.|+..++.... ...+|+.+.+-+.....+|.|...|+..+...
T Consensus 407 s~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 407 SYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33322221112334566666666666666666666666666655221 45666666666666666666666666555431
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHh
Q 044251 372 LKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYT 451 (686)
Q Consensus 372 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 451 (686)
.+ +-..|.-++.+|.+.++++.|+-.|+...+.+.. +.+....+...+-+.|.. ++|+++|++.....++ |...--
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~-d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRK-DKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhh-hHHHHHHHHHHhcCCC-CchhHH
Confidence 11 2224444555666666666666666666554321 333344444444444343 5566666666555444 444434
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044251 452 ALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEK 512 (686)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 512 (686)
..+..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|.-+.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4445555566666666666666553 22233455555566666666666665555555443
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=3.7e-10 Score=105.74 Aligned_cols=233 Identities=16% Similarity=0.175 Sum_probs=136.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHH
Q 044251 273 CSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKG-IPS--NAIVYNTLIN 349 (686)
Q Consensus 273 ~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~--~~~~~~~li~ 349 (686)
|..=++.+..+. .++|.++|-+|.+.+.. +..+..+|.+.|.+.|..|.|+++++.+.+.- ... -....-.|..
T Consensus 39 Yv~GlNfLLs~Q--~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQ--PDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcC--cchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 433344333332 67888888888875432 55667788888888999999999988887761 110 1223455667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCCC
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNA----KSYTCLISAYGRPR 425 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~ 425 (686)
-|...|-+|.|+++|..+.+.+.. -......|+..|-...+|++|+.+-+++.+.+-.+.. ..|+-+...+.-..
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 788889999999999988876432 3456777888888889999999888888776544321 12222332222222
Q ss_pred ChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 426 KMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIW 505 (686)
Q Consensus 426 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 505 (686)
+. +.|..++.+..+.+.+ .+..--.+...+...|++++|.+.++...+.+..--..+...|..+|...|+.++....+
T Consensus 195 ~~-d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 195 DV-DRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hH-HHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 22 4455555555444322 233333344445555555555555555554332222234444445555555555555555
Q ss_pred HHHHhc
Q 044251 506 KLMMSE 511 (686)
Q Consensus 506 ~~~~~~ 511 (686)
..+.+.
T Consensus 273 ~~~~~~ 278 (389)
T COG2956 273 RRAMET 278 (389)
T ss_pred HHHHHc
Confidence 544443
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.4e-09 Score=109.42 Aligned_cols=456 Identities=15% Similarity=0.068 Sum_probs=308.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHH
Q 044251 161 RVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNA 240 (686)
Q Consensus 161 ~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 240 (686)
.++.+....+.+....+.+|..|+-+-+++.... .+|....-++.++.-.|++++|..++..-.- ...+..+..-
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~---~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL 87 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT---NDPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYL 87 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc---CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHH
Confidence 3456666677777788888888888888877654 3446666778888888888888777765422 1267778888
Q ss_pred HHHHHHHcCCHHHHHHHHH----HHHhC---------CCCCCHHH----HHHHHHHHHHc------CCCHHHHHHHHHHH
Q 044251 241 AISGLFWCGRYDDAWKAYE----AMEAN---------NVRPDHVT----CSIMITAMRKN------GRSAKEAWEFFEKM 297 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~~~----~m~~~---------g~~p~~~~----~~~ll~~~~~~------g~~~~~a~~~~~~m 297 (686)
....+.+..++++|..++. .+... -+.+|... -+.....|.-. ++..++|...|.+.
T Consensus 88 ~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~A 167 (611)
T KOG1173|consen 88 AAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEA 167 (611)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHH
Confidence 8888888899999988887 22110 01111111 11111112111 12266777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHh-----------------cCCHHHHH-HHHHHHH----------------HCCCCCCHHH
Q 044251 298 NRKGVKLSQEVVGALMKSFCD-----------------EGLKNEAL-IIQMEME----------------KKGIPSNAIV 343 (686)
Q Consensus 298 ~~~~~~~~~~~~~~li~~~~~-----------------~g~~~~A~-~~~~~~~----------------~~g~~~~~~~ 343 (686)
+..++. ....+..++....- .+.-.+-+ .+|+... -.|..-+...
T Consensus 168 l~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 168 LLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred Hhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 654322 11222222111100 01111111 1121110 0122335555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 044251 344 YNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR 423 (686)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 423 (686)
......-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.+|.+.- +-.+.+|-++.--|..
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 6666677778899999999999988863 2244445555667888888777776666776652 2356677776666666
Q ss_pred CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 424 PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMK 503 (686)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 503 (686)
.++. .+|++.|.+....+.. =...|-.....|.-.|..++|+..|...-+. ++-...-+--+..-|.+.++++.|.+
T Consensus 325 i~k~-seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 325 IGKY-SEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred hcCc-HHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 6666 7799999998766433 2467888899999999999999999888764 22222233445556889999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCC--CCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 044251 504 IWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGK----IGLQ--PTLMTYNMLMNAYGRGGQTSKLPQLLKE 577 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~ 577 (686)
.|.+..... |.|+.+++-+.-.....+.+.+|..+|+..+. .+.+ --..+++.|+.+|.+.+++++|+..+++
T Consensus 402 Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 999998775 77888888888777788999999999998661 1111 1355789999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 578 MATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631 (686)
Q Consensus 578 m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 631 (686)
.+... +-|..++.+++-.|...|+++.|+..|.+.+. +.||..+...++..
T Consensus 481 aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 481 ALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 99752 44899999999999999999999999999885 67998777666654
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.5e-08 Score=96.61 Aligned_cols=445 Identities=13% Similarity=0.071 Sum_probs=280.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC------------------CCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCC
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQE------------------PSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK 230 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (686)
.++....+...+..|++.|..+.++. +...+.......+..|...++-+.|+..+..++...
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 44555556667778888888877652 222344556667778888888888888888776532
Q ss_pred CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 231 EFRDAHVYNAAISGLFWC-GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVV 309 (686)
Q Consensus 231 ~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ 309 (686)
...--|.++..+.+. ++..++.--+.+.... .| .--..|.++.+.+ +..+..-=..|....+.+...+.
T Consensus 128 ---r~p~inlMla~l~~~g~r~~~~vl~ykevvre--cp---~aL~~i~~ll~l~--v~g~e~~S~~m~~~~~~~~~dwl 197 (564)
T KOG1174|consen 128 ---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRE--CP---MALQVIEALLELG--VNGNEINSLVMHAATVPDHFDWL 197 (564)
T ss_pred ---cchhHHHHHHHHHhccccccHHHHhhhHHHHh--cc---hHHHHHHHHHHHh--hcchhhhhhhhhheecCCCccHH
Confidence 222233333333333 3332333333333221 11 1111222222222 11222222233333344444444
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 044251 310 GALMKSFCD--EGLKNEALIIQMEMEKK-GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA-TFNILMDA 385 (686)
Q Consensus 310 ~~li~~~~~--~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~ 385 (686)
..-+.+++. .++-..|...+-.+... -++.|+.....+..++...|+.++|+..|++..-.+ |+.. ........
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~L 275 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHH
Confidence 444444433 33434444433333222 367789999999999999999999999999987653 2222 23333344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHH
Q 044251 386 YSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEK 465 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (686)
+.+.|+.+....+...+....-..-...|..+-..|. ..+. +.|+.+-++..+.... +...|-.-...+...|++++
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~-~K~~-~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD-EKKF-ERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh-hhhH-HHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHH
Confidence 5678999998888888765321111122222222222 2244 6677777777665433 45566666778899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHH
Q 044251 466 AYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILL-DGFAK-QGQYLEARDVVSEF 543 (686)
Q Consensus 466 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~~ 543 (686)
|.-.|+..... -+-+..+|..|+..|...|.+.+|...-+...+.- +.+..++..+. ..|.- -.--++|.+++++.
T Consensus 353 A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 353 AVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 99999998874 23466999999999999999999998887776542 55666666653 33332 23347899999987
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 044251 544 GKIGLQPT-LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV 622 (686)
Q Consensus 544 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 622 (686)
++. .|+ ....+.+...|...|+.++++.++++.+. ..||....+.|...+...+.+++|+..|..+++.+ |..
T Consensus 431 L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d--P~~ 504 (564)
T KOG1174|consen 431 LKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD--PKS 504 (564)
T ss_pred hcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--ccc
Confidence 765 444 55677888899999999999999999986 48999999999999999999999999999998754 666
Q ss_pred HHHHHHHHHHHhhh
Q 044251 623 KSYEKLRSILDVKV 636 (686)
Q Consensus 623 ~~~~~l~~~l~a~~ 636 (686)
.---.=++.++...
T Consensus 505 ~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 505 KRTLRGLRLLEKSD 518 (564)
T ss_pred hHHHHHHHHHHhcc
Confidence 54433444444433
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=6.4e-08 Score=98.91 Aligned_cols=435 Identities=11% Similarity=0.093 Sum_probs=294.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
-.+...+..+..+|++-.-...|..++..-|.....+.|...+......|-++-++.+|++..+ .++..-+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHH
Confidence 4566778888999999999999999999877777778999999999999999999999999887 566668888999
Q ss_pred HHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHCCCCCC--HHHHHHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANN------VRPDHVTCSIMITAMRKNGRSAK---EAWEFFEKMNRKGVKLS--QEVVGALM 313 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~---~a~~~~~~m~~~~~~~~--~~~~~~li 313 (686)
+++.+++++|.+.+....... .+.+...|+-+-....++.+ .- ....+++.++.+ -+| ...|++|.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~-~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD-KVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc-hhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 999999999999998886431 13455567777666666543 11 133444444433 223 35789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHCC
Q 044251 314 KSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSN----------------------QLEEAEGLFQEMKTKG 371 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~~~g 371 (686)
+.|.+.|.++.|..+|++....- .++.-|..+.++|++-. +++-.+..|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 99999999999999999987762 23444444444444311 2333444455544432
Q ss_pred C----------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHhcCCCChHHHHHHH
Q 044251 372 L----------K-PTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP------NAKSYTCLISAYGRPRKMSDMAADA 434 (686)
Q Consensus 372 ~----------~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~~~~~~~A~~~ 434 (686)
. . -++..|..-+. ...|+..+....|.+.... +.| -...+..+...|-..|++ +.|..+
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l-~~aRvi 409 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL-DDARVI 409 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH-HHHHHH
Confidence 1 1 12333433333 2356677777788777653 222 234567777888888777 889999
Q ss_pred HHHHHHcCCCCC---hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC-----------CCC------CHHHHHHHHHHHHH
Q 044251 435 FLRMKRVGIKPT---SHSYTALIHAYSVGGWHEKAYAAFENMLREE-----------IKP------SIETYTALLDAFRR 494 (686)
Q Consensus 435 ~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p------~~~~~~~ll~~~~~ 494 (686)
|++..+...+.- ..+|.....+-.+..+++.|+.+++...... .++ +...|...++.-..
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 999887654322 4567777777778889999999988775421 111 23446666676777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCccH
Q 044251 495 SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTL-MTYNMLMNAYGR---GGQTSK 570 (686)
Q Consensus 495 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~g~~~~ 570 (686)
.|-++....+|+.+++..+.....+.| ....+....-++++++++++-+.+-..|++ ..|+..+.-+.+ .-.++.
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 889999999999999887544333333 333445666788999999886655445554 467776665543 236789
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHH
Q 044251 571 LPQLLKEMATLNIKPDSVTYSTMI--YAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 571 A~~l~~~m~~~g~~pd~~~~~~li--~~~~~~g~~~~A~~~~~~m~ 614 (686)
|..+|+++++ |++|...-+--|+ ..=-+.|-...|+.+++++-
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999998 7777532222222 12234577777777777643
No 53
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=2.9e-08 Score=101.69 Aligned_cols=431 Identities=12% Similarity=0.056 Sum_probs=289.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
+--+...++|...+++.+.++...|... ++....+..+...|+.++|........... ..+.++|..+.-.+....+
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHg--eslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEHG--ESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCccc--hhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhh
Confidence 3344567899999999999999766554 777777888889999999999988877643 3788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQM 330 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 330 (686)
+++|++.|......+ +.|...|.-+.-.-++.++ ++.....-.+.++.. +.....|..++.++.-.|+...|..+++
T Consensus 91 Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd-~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD-YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998874 4455666655544555555 666666666676653 2256778888888999999999999999
Q ss_pred HHHHCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 331 EMEKKG-IPSNAIVYNTLI------NAYCKSNQLEEAEGLFQEMKTKGLKPTSAT-FNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 331 ~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
...+.. -.|+...+.... ....+.|.+++|++.+..-... + .|... -..-...+.+.+++++|..++..+
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 998774 245665554433 3345678888888877665443 1 13332 345566788899999999999999
Q ss_pred HHcCCCCCHHHHHHHHH-HhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 403 QDMGLEPNAKSYTCLIS-AYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS 481 (686)
Q Consensus 403 ~~~~~~p~~~~~~~ll~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 481 (686)
+.. .||...|...+. ++.+..+..+....+|....+.-+... ..-..=+.......-.+..-.++..+.+.|+++-
T Consensus 246 l~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 246 LER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred Hhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-cchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 886 566666655444 443333442333366766655422211 1111111222222223444556667777777654
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcC----------CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMM----SEK----------VEGTRVTFN--ILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
...+.++- -.-...+-..++.-.+. ..| -+|+...|. .++..|-+.|+++.|...++...+
T Consensus 323 f~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 323 FKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 33333332 22111111111111111 111 145555444 567788899999999999999875
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 044251 546 IGLQPT-LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQ 618 (686)
Q Consensus 546 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 618 (686)
. .|+ +..|-.=.+.+...|.+++|..++++..+.+ .+|..+=..-+.-..+..+.++|.++....-+.|.
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 4 444 3455555688899999999999999999765 45766666777888899999999999999887774
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.8e-09 Score=104.46 Aligned_cols=294 Identities=13% Similarity=0.119 Sum_probs=161.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALI 327 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (686)
.|+|.+|+++..+-.+.+- -....|..-..+.-..|+ .+.+-+++.++.+....++.....+..+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd-~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGD-EDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhccc-HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4666666666666555431 122233333344444454 55555666555554333444455555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 328 IQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGL 407 (686)
Q Consensus 328 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 407 (686)
-++.+.+.+.. +.........+|.+.|++..+..++..|.+.|.--+...-.
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~--------------------------- 226 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR--------------------------- 226 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH---------------------------
Confidence 55555555333 44555555555555555555555555555554332211100
Q ss_pred CCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044251 408 EPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTA 487 (686)
Q Consensus 408 ~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 487 (686)
....+|..++.-....++. +.-...++..... .+.+...-..++.-+.+.|+.++|.++.++..+++..|+...
T Consensus 227 -le~~a~~glL~q~~~~~~~-~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~--- 300 (400)
T COG3071 227 -LEQQAWEGLLQQARDDNGS-EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR--- 300 (400)
T ss_pred -HHHHHHHHHHHHHhccccc-hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---
Confidence 0112344444444433332 2223333333221 123455556666777778888888888877777766655221
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044251 488 LLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 488 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 567 (686)
.-.+.+.++...-++..++-.+.. +.++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+
T Consensus 301 -~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 301 -LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE 376 (400)
T ss_pred -HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC
Confidence 123445566666666666655443 445567777777777777777777777765543 5677777777777777777
Q ss_pred ccHHHHHHHHHHHC
Q 044251 568 TSKLPQLLKEMATL 581 (686)
Q Consensus 568 ~~~A~~l~~~m~~~ 581 (686)
..+|.+..++....
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777766543
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=7.8e-10 Score=109.09 Aligned_cols=412 Identities=13% Similarity=0.061 Sum_probs=248.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHhcccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 044251 203 CSVLFPVLGRARMGDDLMVLFKNLPQSKEFRD-AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPD-HVTCSIMITAM 280 (686)
Q Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 280 (686)
+...+.-|.+.|++++|++.|+...+. .|+ +..|.....+|...|+|+++.+.-.+.++. .|+ +-.+..-..+.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 344455677999999999999998773 255 888999999999999999999988888876 565 34555555666
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHH-CC--CCCCHHHHHHHHH
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQME--------MEK-KG--IPSNAIVYNTLIN 349 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~-~g--~~~~~~~~~~li~ 349 (686)
-..|+ +++|+.=+ |...++..+....-.-.+.+++.. -.+ .+ +-|+.....+...
T Consensus 194 E~lg~-~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 194 EQLGK-FDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred Hhhcc-HHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 66666 55554222 222233333222222222222222 112 11 1233333333333
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc---CCCC---CHH----HHHHHH
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR-RMQPEIVEKLLLELQDM---GLEP---NAK----SYTCLI 418 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~---~~~p---~~~----~~~~ll 418 (686)
.+... +. ..+...+-+.|...-..+=..+.. ...+..+...+.+-... .... |.. .-..++
T Consensus 260 sF~~~--~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 260 SFHAD--PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred hcccc--cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 22110 00 000000000011110100000000 00112222211111000 0000 110 011111
Q ss_pred H--HhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 419 S--AYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 419 ~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
. .+.-.|+. -.|..-|+........++. .|--+..+|.+..+.++.+..|.+....+ +.+..+|.--.+.+.-.+
T Consensus 332 ~gtF~fL~g~~-~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 332 RGTFHFLKGDS-LGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred hhhhhhhcCCc-hhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 1 12334455 5588899998888665333 37778888999999999999999998853 336677888888888899
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 044251 497 DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 497 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 576 (686)
+++.|..-|++.++.. +.+...|-.+.-+..+.++++++...|++..+. ++--+..|+.....+...++++.|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999999876 556777777777777899999999999998764 45578899999999999999999999999
Q ss_pred HHHHCCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhhhhcchhhhHH
Q 044251 577 EMATLNIKPD---------SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK-SYEKLRSILDVKVATKNRRDKSA 646 (686)
Q Consensus 577 ~m~~~g~~pd---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~l~a~~~~~~~~~~~~ 646 (686)
...+. .|+ +.+.-.++-.-++ +++..|..+++++++.. |..+ .|..|+.+.
T Consensus 487 ~ai~L--E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~-------------- 547 (606)
T KOG0547|consen 487 KAIEL--EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD--PKCEQAYETLAQFE-------------- 547 (606)
T ss_pred HHHhh--ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC--chHHHHHHHHHHHH--------------
Confidence 98863 333 2223333333355 89999999999998743 5443 444444443
Q ss_pred HHHHHHhcccchhhcccchhHHHHHHHh
Q 044251 647 ILGIINSKMGMVKAKKKGKKDEFWKYKK 674 (686)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~a~~~f~~~~~ 674 (686)
+..|+.++|+++|++...
T Consensus 548 ----------lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 548 ----------LQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ----------HHHhhHHHHHHHHHHHHH
Confidence 244566778888877654
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=4.8e-09 Score=101.58 Aligned_cols=294 Identities=15% Similarity=0.103 Sum_probs=209.6
Q ss_pred HHHHHH--ccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044251 206 LFPVLG--RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKN 283 (686)
Q Consensus 206 l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 283 (686)
+..++. -.|++.+|.++..+-.+.+. .....|...+.+--+.|+.+.|-..+.+..+.--.++...+-+....+...
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 444444 36999999999998776544 455667777788889999999999999998763255667777778888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCC
Q 044251 284 GRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA-------IVYNTLINAYCKSNQ 356 (686)
Q Consensus 284 g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~ 356 (686)
|+ ...|..-+.++.+.+.. ++.......++|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+.
T Consensus 167 ~d-~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 167 RD-YPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CC-chhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 88 89999999999987644 7788899999999999999999999999999875444 356667766666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044251 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFL 436 (686)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~ 436 (686)
.+.-...|+..... .+-+...-..++.-+.+.|+.++|.++..+..+.+..|. ...++ .+.+.++. +.-++..+
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~-~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDP-EPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCc-hHHHHHHH
Confidence 66666666666543 333455556677777888888888888888888766655 22222 23333343 33334444
Q ss_pred HHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 437 RMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 437 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
.-.+..+. +...+.+|...|.+.+.|.+|...|+...+ ..|+..+|..+..++.+.|+...|.++.++.+..
T Consensus 319 ~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 319 KWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 33333222 446677777777777777777777776665 4677777777777777777777777777766543
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=6.9e-11 Score=110.44 Aligned_cols=231 Identities=12% Similarity=-0.015 Sum_probs=182.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
-+.+.+.|.+.|.+.+|.+.|+..+.+.|.. ++|..+.++|.+..++..|+.+|....+ ..+.++.....+.+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~---dTfllLskvY~ridQP~~AL~~~~~gld-~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---DTFLLLSKVYQRIDQPERALLVIGEGLD-SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCch---hHHHHHHHHHHHhccHHHHHHHHhhhhh-cCCchhhhhhhhHHHHH
Confidence 3467888889999999999999988887655 7888899999999999999999988877 44467777777888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEAL 326 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (686)
..++.++|.++|+...+.. +.++.+...+...|.-.++ ++.|+.+|+++++.|+. ++..|+.+.-.|.-.+++|.++
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~-PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNN-PEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCC-hHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 8899999999998887653 3455555555666666676 88999999999988876 7888888888888888888888
Q ss_pred HHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 327 IIQMEMEKKGIPS--NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 327 ~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
.-|......--.| -..+|..|.......||+..|.+.|+-.+..+.. ....+|.|.-.-.+.|+++.|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 8888776553222 3567888888888888999888888887776443 556788888888888899888888887765
Q ss_pred c
Q 044251 405 M 405 (686)
Q Consensus 405 ~ 405 (686)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 4
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=1.1e-07 Score=97.46 Aligned_cols=424 Identities=13% Similarity=0.095 Sum_probs=279.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
.-.|...|+-++|....+..++.++ .+..-|++++-.+....++++|++.|......+. .|...|.-+.-.-++.|+
T Consensus 48 GL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 48 GLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRD 124 (700)
T ss_pred cchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHh
Confidence 3455667888999999999988654 3447889988888889999999999999887443 789999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCCHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKG-VKLSQEVVGALM------KSFCDEGLKN 323 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~ 323 (686)
++.....-..+.+.. +-....|..+..+..-.|. ...|..++++..+.. -.|+...+.... ....+.|.++
T Consensus 125 ~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~-y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q 202 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGE-YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQ 202 (700)
T ss_pred hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHH
Confidence 999999888887762 2345678888888888888 899999999998765 245655554332 3456788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHH-hcCCHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD-AYS-RRMQPEIVEKLLLE 401 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~-~~~~~~~a~~~~~~ 401 (686)
.|++.+..-... +......-..-...+.+.+++++|..++..++.. .||...|+..+. ++. -.+..+....+|..
T Consensus 203 ~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 203 KALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888877665544 2212333445567788999999999999999987 456666655544 443 33344444466666
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHH-------
Q 044251 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENML------- 474 (686)
Q Consensus 402 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------- 474 (686)
..+.-..-. ..-..=+... ....+.+..-.++..+.+.|+.+ ++..+...|-.-...+ +++++.
T Consensus 280 ls~~y~r~e-~p~Rlplsvl-~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 280 LSEKYPRHE-CPRRLPLSVL-NGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSL 350 (700)
T ss_pred HhhcCcccc-cchhccHHHh-CcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhc
Confidence 654311100 0000011111 11234455556666777776543 2333333232211111 222221
Q ss_pred -HcC----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 475 -REE----------IKPSI--ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVS 541 (686)
Q Consensus 475 -~~~----------~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 541 (686)
..| -+|+. .++..+++.+-+.|+++.|...++..+..- +.-...|..=.+.+...|++++|..+++
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ 429 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLD 429 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 111 14444 445567788889999999999999988653 3334456666788889999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC--C----HHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 044251 542 EFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP--D----SVTYSTM--IYAFVRVRDFKRAFFYHKQM 613 (686)
Q Consensus 542 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d----~~~~~~l--i~~~~~~g~~~~A~~~~~~m 613 (686)
+..+.. .+|...-.--..-..++.+.++|.++.....+.|... | ..+|-.+ +.+|.+.|++-+|++-|..+
T Consensus 430 ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 430 EAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 988876 5566655566667778899999999988887766411 1 1222222 45677777777776554443
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=4.3e-08 Score=103.34 Aligned_cols=431 Identities=13% Similarity=0.071 Sum_probs=272.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
+.+......+...|++++|+++++.....-.+. .......+..+.+.|+.++|..+|..+...++ .|..-|..+..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk--~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~ 81 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDK--LAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHH
Confidence 444556778889999999999998877665443 36778889999999999999999999998664 677777777777
Q ss_pred HHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 245 LFWCG-----RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSA-KEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 245 ~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
..-.. +.+...++|+++... -|.......+.-.+.. |..+ ..+..++..++..|++ .+|+.|-..|..
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 63333 567788999998776 4554444333322222 2223 3466777788888865 566666666766
Q ss_pred cCCHHHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 044251 319 EGLKNEALIIQMEMEKK----G----------IPSNAI--VYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT-SATFNI 381 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 381 (686)
.....-..+++...... | -+|+.. ++..+...|...|++++|++++++.++. .|+ +..|..
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~ 233 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMT 233 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHH
Confidence 65566566666665432 1 134443 4466788899999999999999999987 445 558888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCh--------hhHhhh
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTS--------HSYTAL 453 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~~~~~l 453 (686)
-..++-..|++.+|.+.++........ |...-+.....+.+.|.. ++|..++......+..|-. .-....
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~-e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRI-EEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCH-HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 899999999999999999999876432 555555666677778766 8899999888766543322 122455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHH----------HHHHHHHHHcCC-------HHHHHHHHHHHHhc
Q 044251 454 IHAYSVGGWHEKAYAAFENMLRE-----EIKPSIETY----------TALLDAFRRSGD-------TGMMMKIWKLMMSE 511 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~----------~~ll~~~~~~g~-------~~~a~~~~~~~~~~ 511 (686)
..+|.+.|++..|+..|..+.+. .-.-|.++| .-+++..-+... ...|.++|-.+...
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~ 391 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDK 391 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 78899999999999888776543 112233333 333332211111 13455555555433
Q ss_pred CCCC------------CHHHHHHHHHHH---HHcCCHHHHHHHHHH-H----------H-hCCCCCCHHHHHHHHHHHHh
Q 044251 512 KVEG------------TRVTFNILLDGF---AKQGQYLEARDVVSE-F----------G-KIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 512 ~~~~------------~~~~~~~li~~~---~~~g~~~~A~~~~~~-~----------~-~~~~~p~~~~~~~li~~~~~ 564 (686)
.... +..--..+..-. .+...-+++...-.+ . . ....+.|. ..++.-+.+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~---Dp~GekL~~ 468 (517)
T PF12569_consen 392 PEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD---DPLGEKLLK 468 (517)
T ss_pred cccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC---CccHHHHhc
Confidence 2100 000001111100 001111111111000 0 0 00001111 112333334
Q ss_pred cC-CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 565 GG-QTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 565 ~g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
.. =+++|.++++-+.+.+ .-+..+|..-..+|.+.|.+--|++.+.+
T Consensus 469 t~dPLe~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 469 TEDPLEEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred CCcHHHHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 33 4678999999999764 33688999999999999999999988764
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.30 E-value=1.3e-06 Score=89.58 Aligned_cols=437 Identities=14% Similarity=0.107 Sum_probs=206.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----CCHHHHHHHHHHHHccCChh---HHHHHHHhcccCCCCC
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSL-----VSPRACSVLFPVLGRARMGD---DLMVLFKNLPQSKEFR 233 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~ 233 (686)
+.++.....+..|+..+++++|-+.++.++.++.+. -+-..|..+.....+.-+.- ....+++.+.. .+ +
T Consensus 167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~-rf-t 244 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR-RF-T 244 (835)
T ss_pred cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc-cC-c
Confidence 455666677777777777777777777766652211 12244555555444432221 12233333332 11 2
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------------------CHHHH
Q 044251 234 D--AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR---------------------SAKEA 290 (686)
Q Consensus 234 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------------------~~~~a 290 (686)
| -..|++|...|.+.|.+++|.++|++.... ...+.-|..+..+|+.... +++..
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 2 356777888888888888888888776554 3344445555555543221 01112
Q ss_pred HHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHH
Q 044251 291 WEFFEKMNRKGV-----------KLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPS------NAIVYNTLINAYCK 353 (686)
Q Consensus 291 ~~~~~~m~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~------~~~~~~~li~~~~~ 353 (686)
+..|+.+..... +-+...|..-+. +..|+..+-...+.+..+. +.| -...|..+...|-.
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHh
Confidence 222222222110 001111111111 1123333334444444332 111 12234444455555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHH
Q 044251 354 SNQLEEAEGLFQEMKTKGLKPT---SATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDM 430 (686)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 430 (686)
.|+++.|..+|++..+-..+-- ..+|......=.+..+++.|+++++.... .|.... + .+...+....
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ- 470 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQ- 470 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHH-
Confidence 5555555555555444322110 11222222222333344444444333322 121111 0 1111111100
Q ss_pred HHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 431 AADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 431 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
..++ .+...|...+...-..|-++....+|+.+....+. ++...-.....+....-++++.++|++-+.
T Consensus 471 -~rlh---------rSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 471 -ARLH---------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred -HHHH---------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 0011 12344555566666667777777788877776442 333333333344556667777877777666
Q ss_pred cCCCCC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCccHHHHHHHHHHHCCCC
Q 044251 511 EKVEGT-RVTFNILLDGFAK---QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA--YGRGGQTSKLPQLLKEMATLNIK 584 (686)
Q Consensus 511 ~~~~~~-~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~ 584 (686)
.-..|+ -..|+..+.-+.+ ...++.|..+|++.++ |++|...-+--|+.+ =-+.|-...|+.+++++-. +++
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~ 617 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVK 617 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCC
Confidence 533333 3466666655553 2367788888888877 555543322222222 1245777778888887654 344
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 585 PD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLR 629 (686)
Q Consensus 585 pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 629 (686)
+. ..+|+..|.--...=.+.....+++++++. -||..+-..|+
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mcl 662 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCL 662 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHH
Confidence 43 345666665433333344555666666653 35554433333
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=1.3e-09 Score=118.81 Aligned_cols=215 Identities=10% Similarity=-0.018 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---------ccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLG---------RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
+++|+++|+.+...+|... ..+..++.++. ..+++++|...+++..+..+ .+..++..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~ldP~~a--~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSI--APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 4577777777777666442 44544444332 12335666666666655332 456666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQM 330 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 330 (686)
+++|...|++..+.+ +.+...+..+...+...|+ +++|...++++++.++. +...+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQ-LEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 777776666666553 2234455555666666666 66666666666665432 22222233334445666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 331 EMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 331 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
++.....+.+...+..+..++...|++++|...++++...... +....+.+...|+..| +.+...++.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 6655432224444555666666666666666666665443111 2223344444444444 34555444443
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=1.9e-07 Score=97.81 Aligned_cols=435 Identities=12% Similarity=0.035 Sum_probs=285.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQ---EPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
-..++-..+..++....--++.+ .....++..|..+.-++.+.|+++.+.+.|++... ........|+.+...|..
T Consensus 291 ~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-~~~~~~e~w~~~als~sa 369 (799)
T KOG4162|consen 291 EESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-FSFGEHERWYQLALSYSA 369 (799)
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhhhHHHHHHHHHHHHH
Confidence 34455566666776544444333 33345779999999999999999999999998776 344677889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc---
Q 044251 248 CGRYDDAWKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK--GV--KLSQEVVGALMKSFCDE--- 319 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~--~~--~~~~~~~~~li~~~~~~--- 319 (686)
+|.-..|+.++++-....-.| |...+-..-..|.+.-+..++++++-.+++.. +. ......|..+.-+|...
T Consensus 370 ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 370 AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc
Confidence 999999999999876542124 44455555566666554478888888777762 11 12233444444333321
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 320 --------GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ 391 (686)
Q Consensus 320 --------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (686)
....++++.+++..+.+.. |..+...+.--|+..++++.|.+..++..+.+-.-+...|..|.-++...++
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 1235677888888877544 3333334555677889999999999999998666688999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHc---------------------CC-----C
Q 044251 392 PEIVEKLLLELQDMGLEPN-AKSYTCLISAYGRPRKMSDMAADAFLRMKRV---------------------GI-----K 444 (686)
Q Consensus 392 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~---------------------~~-----~ 444 (686)
+.+|+.+.+...+. .++ ......-+..-...++. +++......+... |. .
T Consensus 529 ~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~-e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 529 LKEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDR-EEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred hHHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccH-HHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 99999999887643 111 00000001111111122 3333333222210 00 0
Q ss_pred C--ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044251 445 P--TSHSYTALIHAYSVGGWHEKAYAAFENMLREEI--KPS------IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE 514 (686)
Q Consensus 445 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 514 (686)
+ ...++..+..- .. -+.+.+..-.. +..... .|+ ...|......+.+.+..++|...+.+..... +
T Consensus 606 ~~~a~s~sr~ls~l-~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~ 681 (799)
T KOG4162|consen 606 PTDAISTSRYLSSL-VA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-P 681 (799)
T ss_pred ccccchhhHHHHHH-HH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-h
Confidence 0 01111111111 10 00000000000 111111 122 1234555667778888899988888887654 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH--HHHHHHHCCCCCCHHHHHH
Q 044251 515 GTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ--LLKEMATLNIKPDSVTYST 592 (686)
Q Consensus 515 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~pd~~~~~~ 592 (686)
-....|......+...|...+|.+.|....... +-++.+..++..++.+.|+..-|.. ++.++.+.+ +-+...|..
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~ 759 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYY 759 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 677788888888889999999999999988776 4467889999999999999888888 999999764 337999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 593 MIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 593 li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
++..+.+.|+.++|.+.|..+.+.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhh
Confidence 999999999999999999988765
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=1.8e-08 Score=106.09 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 564 (686)
+..+.+.|-..|+++.|+...++.++.. |-.+..|..-...|-+.|++.+|.+.++....+... |..+-+-.+..+.+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 3444555555666666666666665553 333455555555666666666666666665555422 55555555555556
Q ss_pred cCCccHHHHHHHHHHHCCCCCCH------HHH--HHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 565 GGQTSKLPQLLKEMATLNIKPDS------VTY--STMIYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 565 ~g~~~~A~~l~~~m~~~g~~pd~------~~~--~~li~~~~~~g~~~~A~~~~~~m~ 614 (686)
.|++++|.+++......+..|-. .+| ...+.+|.+.|++..|++.|....
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666555544432211 111 233456666666666665554443
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.4e-08 Score=102.36 Aligned_cols=287 Identities=13% Similarity=0.013 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 302 VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNI 381 (686)
Q Consensus 302 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 381 (686)
..-+.........-|...+++.+..++.+.+.+. .++....+..-|.++.+.|+..+-..+=.+|.+.-+. ...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhh
Confidence 3445666777778888899999999999999987 4567777777888999999988888888888876333 6678998
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcC
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGG 461 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 461 (686)
+.--|...|...+|.+.|.+....... =...|-..-..|+-.+.. |.|+..|....+.-.. ....+--+.--|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Eh-dQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEH-DQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchH-HHHHHHHHHHHHhccC-CcchHHHHHHHHHHhc
Confidence 988888889999999999987643221 133455566667666565 7888888877664211 1112222344578899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCCHHHHHHHHHHHHHcCCHHH
Q 044251 462 WHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE----K--VEGTRVTFNILLDGFAKQGQYLE 535 (686)
Q Consensus 462 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~ 535 (686)
..+.|...|.+.... .+-|+..++-+.-..-..+.+.+|..+|+..+.. + ...-..+++.|..+|.+++.+++
T Consensus 395 n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 999999999998874 3456777887777777889999999999988732 1 11234578999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 536 ARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAF 597 (686)
Q Consensus 536 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 597 (686)
|+..+++.+... +.+..++.+++-.|...|+++.|++.|.+.+ .+.||..+...++..+
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 999999998876 5599999999999999999999999999998 5789887777777643
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.9e-09 Score=101.01 Aligned_cols=230 Identities=15% Similarity=0.138 Sum_probs=170.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 044251 309 VGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATF-NILMDAYS 387 (686)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~ 387 (686)
-+.+.+.|.+.|.+.+|.+.++...+. .|-+.||..|-.+|.+..+++.|+.+|.+-++. .|-.+|| .-+.+++.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 356778888889999998888888776 346778888888898999999999998887765 3444554 44666777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHH
Q 044251 388 RRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAY 467 (686)
Q Consensus 388 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 467 (686)
..++.++|.++|+...+.. ..++....++...|.-.++. +.|+.+|+++.+.|+. +...|+.+.-+|.-.++++-++
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~P-E~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNP-EMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCCh-HHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 7888888888888887653 22444455555555555444 8888888888888876 7778888888888888888888
Q ss_pred HHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 468 AAFENMLREEIKPSI--ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 468 ~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
..|++.+..-..|+. ..|..+.......|++..|.+.|+..+..+ +.+...+|.|.-.-.+.|++++|..+++...+
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 888887765443443 567777777777788888888888777665 55667777777777778888888888877655
Q ss_pred C
Q 044251 546 I 546 (686)
Q Consensus 546 ~ 546 (686)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 3
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=1.4e-07 Score=98.80 Aligned_cols=407 Identities=11% Similarity=0.024 Sum_probs=276.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCC-CCCCHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK-EFRDAHVYNAA 241 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l 241 (686)
....+..+.-.+.+.|++..+.+.|+.....-- .....|..+...+...|.-..|..+++.-.... .+++...+-..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 566777888899999999999999999876422 233788999999999999999999998765433 23455555555
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHCCCCCCH
Q 044251 242 ISGLFW-CGRYDDAWKAYEAMEAN--NV--RPDHVTCSIMITAMRKNGR----------SAKEAWEFFEKMNRKGVKLSQ 306 (686)
Q Consensus 242 i~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~g~----------~~~~a~~~~~~m~~~~~~~~~ 306 (686)
...|.+ -+.++++++.-.+.... +. ......|..+.-+|...-. ...++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 555554 45667776666655541 11 2233455555555542211 156788999999888654 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 044251 307 EVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK-GLKPTSATFNILMDA 385 (686)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~ 385 (686)
...-.+.-.|+..++++.|.+...+..+.+...+...|..|.-.+...+++.+|+.+.+...+. |. |......-+..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhh
Confidence 4444455567888999999999999999877779999999999999999999999999887654 21 11111111222
Q ss_pred HHhcCCHHHHHHHHHHHHHc---------------------CC-------CCCHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044251 386 YSRRMQPEIVEKLLLELQDM---------------------GL-------EPNAKSYTCLISAYGRPRKMSDMAADAFLR 437 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~~---------------------~~-------~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~ 437 (686)
-...++.+++......+... |+ .-...++..+....... . ..+..- ..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~-~~~~se-~~ 632 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--L-KSAGSE-LK 632 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--h-hhcccc-cc
Confidence 22344555544443333211 00 00112222222211100 0 000000 00
Q ss_pred HHHcCC--CCC------hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 438 MKRVGI--KPT------SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 438 ~~~~~~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
+..... .|+ ...|......+.+.+..++|...+.+.... .+.....|......+...|..++|.+.|...+
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 111111 122 234566677888899999999888888764 34566778888888899999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 510 SEKVEGTRVTFNILLDGFAKQGQYLEARD--VVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 510 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
..+ |.++....++..++...|+..-|.. ++.++.+.+ +.+...|-.|+..+.+.|+.+.|.+.|....+.
T Consensus 712 ~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 876 6678889999999999998887777 999999988 559999999999999999999999999988754
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2.1e-07 Score=88.44 Aligned_cols=426 Identities=13% Similarity=0.085 Sum_probs=221.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
+.-+...+++..|+.+++.....+.... ..+-.-++..+.+.|++++|+..|..+.+. ..++...+-.|...+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHH
Confidence 5556667788888888887765432221 122222445566888888888888877663 33666777777777777788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIM-ITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
+.+|..+-.. .|+....+.| +....+.++ -++-..+.+.+.. ...--.+|.......-.+.+|.+++
T Consensus 107 Y~eA~~~~~k------a~k~pL~~RLlfhlahklnd-Ek~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 107 YIEAKSIAEK------APKTPLCIRLLFHLAHKLND-EKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHhh------CCCChHHHHHHHHHHHHhCc-HHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8888766544 2444444433 344445554 4444444444332 1122333444444445577788888
Q ss_pred HHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 330 MEMEKKGIPSNAIVYNT-LINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLE 408 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 408 (686)
..+...+ |.....|. +.-+|.+..-++-+.+++.-.+.. +.-+....|...-...+.-+-..|+.-.+.+.+.+-.
T Consensus 175 krvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 175 KRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred HHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 7777652 23344443 334566666677777777666554 2213334443332222221111222222222221100
Q ss_pred --------------------------C-----CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHH
Q 044251 409 --------------------------P-----NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY 457 (686)
Q Consensus 409 --------------------------p-----~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (686)
| -+..-..|+--|.+.++. .+|..+.+.+. +. +..-|-.-.-.+
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dV-qeA~~L~Kdl~---Pt-tP~EyilKgvv~ 326 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDV-QEAISLCKDLD---PT-TPYEYILKGVVF 326 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccH-HHHHHHHhhcC---CC-ChHHHHHHHHHH
Confidence 0 001111122223333332 33444333321 10 111111111111
Q ss_pred HhcCC-------HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 044251 458 SVGGW-------HEKAYAAFENMLREEIKPSI-ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK 529 (686)
Q Consensus 458 ~~~g~-------~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 529 (686)
...|+ ..-|...|+-.-..+..-|. ..-.++...+.-..+++.++..++.+..--...|...+ .+..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence 22221 22233333322222221111 12233333444455666676666666654433344333 46778888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHH
Q 044251 530 QGQYLEARDVVSEFGKIGLQPTLMTYNM-LMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYS-TMIYAFVRVRDFKRAF 607 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-~li~~~~~~g~~~~A~ 607 (686)
.|++.+|+++|-.+....++ |..+|-+ |..+|.+.+.++-|..++-++.. ..+..++. .+.+.|.+.+.+=-|.
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887655544 5666654 56788899999998887665542 22444443 3446888999988888
Q ss_pred HHHHHHHHCCCCCCHHHH
Q 044251 608 FYHKQMVKSGQVPDVKSY 625 (686)
Q Consensus 608 ~~~~~m~~~g~~p~~~~~ 625 (686)
+.|..+.... |+++-|
T Consensus 482 KAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 482 KAFDELEILD--PTPENW 497 (557)
T ss_pred HhhhHHHccC--CCcccc
Confidence 8888877644 666544
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=5.1e-09 Score=101.15 Aligned_cols=197 Identities=11% Similarity=-0.010 Sum_probs=92.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 202 ACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMR 281 (686)
Q Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 281 (686)
.+..++..+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33344444444444444444444443321 1334444444455555555555555555444332 222333444444444
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 282 KNGRSAKEAWEFFEKMNRKGV-KLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
..|+ +++|.+.++++..... ......+..+...+...|++++|...+....... +.+...+..+...+...|++++|
T Consensus 111 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGK-YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred Hccc-HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4444 5555555555443211 1122334444455555555555555555555442 22344555555555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 361 EGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
...+++.... ...+...+..++..+...|+.+.|..+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555544 12233444445555555555555555555443
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=7.5e-07 Score=90.64 Aligned_cols=228 Identities=10% Similarity=0.023 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
+.+..-++.....|.+++|++....++...|+.. .++..-+.++.+.+++++|+.+.+.-..... .++.. .--+-+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~--~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~-fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDE--DAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFF-FEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcH--hhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhh-HHHHHH
Confidence 6777778899999999999999999999876544 6777777788899999999987776442100 11111 223445
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS-QEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~ 323 (686)
+.+.+..++|+..++.+. +.+..+...-...+.+.|+ +++|+++|+.+.+.+..-. ...-..++..-.. -
T Consensus 89 ~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~-ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLER-YDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----L 159 (652)
T ss_pred HHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----h
Confidence 668899999999988322 2233466777788889998 9999999999988764321 1222222211110 0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------CC------CCHH-HHHHHHHHHHhc
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG-------LK------PTSA-TFNILMDAYSRR 389 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------~~------p~~~-~~~~ll~~~~~~ 389 (686)
.+ ++.+..... ...+-..+......+...|+|.+|+++++.....+ -. -... .-..|..++-..
T Consensus 160 ~~-~~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 160 QV-QLLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hH-HHHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 11 112211111 11122233334556677899999999988873211 00 0011 112345566778
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 044251 390 MQPEIVEKLLLELQDMGL 407 (686)
Q Consensus 390 ~~~~~a~~~~~~m~~~~~ 407 (686)
|+.++|..+|...+....
T Consensus 238 Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNP 255 (652)
T ss_pred cchHHHHHHHHHHHHhcC
Confidence 999999999988887653
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=5.6e-09 Score=100.87 Aligned_cols=201 Identities=13% Similarity=0.022 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
...+..+...+...|++++|++.|+.+....|.. ...+..++..+...|++++|.+.+++..... +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD--YLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4566778899999999999999999999887654 4788889999999999999999999887744 357788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK 322 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 322 (686)
.+...|++++|.+.|++.......+ ....+..+...+...|+ +++|.+.+.+..+.... +...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-FDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 9999999999999999998652222 34566677778888998 99999999999987533 567888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
++|...+++.... .+.+...+..++..+...|+.++|..+++.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999887 4557778888889999999999999998887653
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=2.3e-07 Score=88.26 Aligned_cols=400 Identities=9% Similarity=0.040 Sum_probs=251.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 168 VQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 168 ~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
..+...+.+.|+|++|+..|..+.+.+ ..+...+..++..+.-.|.+.+|..+-.+.+. ++-.-..|...-.+
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHH
Confidence 356777889999999999999998853 34457777888888888999999998877654 34444455556666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHH
Q 044251 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGA-LMKSFCDEGLKNEAL 326 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~ 326 (686)
.|+-++-..+-+.+... ...--+|.......-. +++|+++|.+.+..+ |+-...|. +.-.|.+..-++-+.
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~H-YQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMH-YQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHH
Confidence 77766655555554321 1111222222222222 789999999988754 34344443 334566777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------HHHCCC------------CCC-----
Q 044251 327 IIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQE--------------MKTKGL------------KPT----- 375 (686)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------------m~~~g~------------~p~----- 375 (686)
++++-.... ++.+....|..+....+.=.-..|.+-..+ +...++ -|.
T Consensus 206 evl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I 284 (557)
T KOG3785|consen 206 EVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI 284 (557)
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence 888877765 555666666665554442211122221222 111110 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCC---CChHHHHHHHHHHHHHcCCCCChh-hH
Q 044251 376 SATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA-YGRP---RKMSDMAADAFLRMKRVGIKPTSH-SY 450 (686)
Q Consensus 376 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~---~~~~~~A~~~~~~~~~~~~~~~~~-~~ 450 (686)
...-..|+--|.+.+++.+|..+.+++.- ..|-......+..+ ++.. ......|...|.-+-+.+..-|.. --
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 01112345556789999999998877631 12333322222222 2221 122345667776665555544432 24
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 044251 451 TALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ 530 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 530 (686)
..+..++.-..++++.+..+..+..- +..|......+.++++..|++.+|+++|-.+....++.+..-...|.++|.++
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhc
Confidence 45666677777899999999888775 33344444557899999999999999999887666665665666788899999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHH
Q 044251 531 GQYLEARDVVSEFGKIGLQPTLMT-YNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYS 591 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 591 (686)
++...|++++-++.. +.+..+ ...+..-|.+.+.+--|.+.|+++.. +.|+++-|.
T Consensus 442 kkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred CCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 999999998876542 223333 34445678899998888889988875 467776664
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=1.4e-08 Score=110.82 Aligned_cols=181 Identities=11% Similarity=0.067 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCh
Q 044251 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSR---------RMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKM 427 (686)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 427 (686)
+++|..+|++..+.... +...|..+..++.. .+++++|...+++..+.... +...+..+...+...|+.
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Confidence 45666666666654222 23334433333321 12244444444444443211 233333333333333333
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 428 SDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI-ETYTALLDAFRRSGDTGMMMKIWK 506 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~ 506 (686)
++|...|++..+.++. +...+..+..+|...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++
T Consensus 355 -~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 -IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred -HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 4445555444444322 2334444444555555555555555555442 2221 112222223333445555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 507 LMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEF 543 (686)
Q Consensus 507 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 543 (686)
++++...+.+...+..+..++...|++++|...++++
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5443332223333444444444555555555555444
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.23 E-value=4.9e-09 Score=110.60 Aligned_cols=249 Identities=15% Similarity=0.096 Sum_probs=142.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 044251 259 EAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIP 338 (686)
Q Consensus 259 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 338 (686)
-.+...|+.|+.+||..+|.-||..|+ .+.|- +|.-|.-...+.+...|+.++......++.+.+. .
T Consensus 14 a~~e~~gi~PnRvtyqsLiarYc~~gd-ieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 14 ALHEISGILPNRVTYQSLIARYCTKGD-IEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHhcCCCchhhHHHHHHHHcccCC-Ccccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334444555555555555555555554 44444 5555554444445555555555544555444443 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHH-----------------------HHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 339 SNAIVYNTLINAYCKSNQLEE-----------------------AEGLFQEMKT-KGLKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~-----------------------A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
|-..+|..|..+|...||+.. ...++..+.- .+.-||..+ ++....-.|-++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHH
Confidence 445555555555555555332 2222222111 112223222 2223334455566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHH
Q 044251 395 VEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENML 474 (686)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 474 (686)
+.+++..+....-. .+..+ .++-+.......++-..+.....+ .++..+|.+++.+-.-+|+.+.|..++.+|+
T Consensus 158 llkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 66665554322111 11111 355555544443444444444333 4788888888888888888999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 044251 475 REEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQ 532 (686)
Q Consensus 475 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 532 (686)
+.|++.+.+-|..++-+ .++...++.+++.|.+.|+.|+..|+...+-.+...|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888888877777755 78888888888888888888888888877777666555
No 74
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.20 E-value=9.4e-10 Score=115.82 Aligned_cols=91 Identities=22% Similarity=0.340 Sum_probs=80.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 292 EFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG 371 (686)
Q Consensus 292 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (686)
.++-.+...|+.|+..||..+|.-||..|+++.|- +|.-|..+..+.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667778899999999999999999999999998 9999988888888999999999988888887775
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH
Q 044251 372 LKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 372 ~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
.|...||..|..+|...||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 5788899999999999999765
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=4.1e-08 Score=102.16 Aligned_cols=248 Identities=19% Similarity=0.199 Sum_probs=162.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 338 PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK-----GL-KPTSA-TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPN 410 (686)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 410 (686)
+.-..+...|...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++.+|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i----- 270 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI----- 270 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----
Confidence 333445566778888888888888888776543 21 12222 2233556666677777777766665421
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-H
Q 044251 411 AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE-----EI-KPSI-E 483 (686)
Q Consensus 411 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~-~ 483 (686)
....++.. . ..-..+++.|..+|.+.|++++|...++...+- +. .|.+ .
T Consensus 271 ------~e~~~G~~--h----------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 271 ------REEVFGED--H----------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred ------HHHhcCCC--C----------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 11111110 0 001344555666677777776666666554331 11 2222 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC---
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSE---KVE----GTRVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQ--- 549 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--- 549 (686)
.++.+...|...++++.|..+++...+. -+. .-..+++.|...|...|++++|.+++++++.. +-.
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 4666677788888888888888876654 111 23468899999999999999999999987632 111
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 550 PTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT----LNI-KPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 550 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 614 (686)
-....++.|...|.+.++..+|.++|.+... .|. .|+ ..+|..|..+|.+.|+++.|.++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1245688899999999999999999987653 222 233 5789999999999999999999998876
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=1.3e-10 Score=81.16 Aligned_cols=50 Identities=48% Similarity=0.909 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 339 SNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR 388 (686)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (686)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777653
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=1e-10 Score=81.62 Aligned_cols=49 Identities=39% Similarity=0.686 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 550 PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFV 598 (686)
Q Consensus 550 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 598 (686)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666665
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=5e-08 Score=101.54 Aligned_cols=244 Identities=18% Similarity=0.221 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-
Q 044251 306 QEVVGALMKSFCDEGLKNEALIIQMEMEKK-----GI-PSNA-IVYNTLINAYCKSNQLEEAEGLFQEMKTK-----GL- 372 (686)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 372 (686)
..+...+...|...|+++.|..+++...+. |. .|.+ ...+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888888888888888888877654 21 1222 23345778899999999999999998753 32
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-hhhH
Q 044251 373 KPT-SATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT-SHSY 450 (686)
Q Consensus 373 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~ 450 (686)
.|. ..+++.|..+|.+.|++++|..+++...+. ++...... .+. ...+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-----------------------------~~~~~~~~-~~~v~~~l 328 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-----------------------------YEKLLGAS-HPEVAAQL 328 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----------------------------HHHhhccC-hHHHHHHH
Confidence 222 237788888999999999999888776431 11100000 011 1224
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCC
Q 044251 451 TALIHAYSVGGWHEKAYAAFENMLRE---EIKPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEK-------VEGT 516 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~ 516 (686)
+.++..|+..+++++|..+++...+. -+.++ ..+++.+...|...|++++|.+++++++... ..-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 45566777788888888888766442 11122 3678888999999999999999999887541 2223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCC-C-CHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGK----IGLQ-P-TLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
...++.+...|.+.+++.+|.++|.+... .|.. | ...+|..|+..|.+.|++++|+++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55778888899999999999999887542 2321 2 35689999999999999999999988776
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.9e-06 Score=86.51 Aligned_cols=425 Identities=14% Similarity=0.091 Sum_probs=251.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
-+..++..=+-.+++.+.|++|+.+.+.-....... ..+..-+-+..+.++.|+|+..++.... .+..+...-
T Consensus 44 dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~---~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~ 116 (652)
T KOG2376|consen 44 DDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN---SFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELR 116 (652)
T ss_pred CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc---hhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHH
Confidence 356667777888999999999997666544321111 1112334455689999999999994433 566678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDH--VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
...+.+.|++++|+++|+.+.+.+. ++. ..-..++.+-.. -.+. +.+.... ....+...+-.....+...
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~-----l~~~-~~q~v~~-v~e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAAA-----LQVQ-LLQSVPE-VPEDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh-----hhHH-HHHhccC-CCcchHHHHHHHHHHHHhc
Confidence 8999999999999999999987653 222 111122221111 1111 1221111 1111233334445567789
Q ss_pred CCHHHHHHHHHHHHHCC-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHH
Q 044251 320 GLKNEALIIQMEMEKKG-------IPSN-------AIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA----TFNI 381 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g-------~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ 381 (686)
|++.+|+++++.....+ -..+ ..+...|..++-..|+.++|..++...+...+. |.. .-|.
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NN 267 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNN 267 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcc
Confidence 99999999999883221 1110 123344666777899999999999999887543 432 2333
Q ss_pred HHHHHHhcCCHH-HHH------------HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChh
Q 044251 382 LMDAYSRRMQPE-IVE------------KLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSH 448 (686)
Q Consensus 382 ll~~~~~~~~~~-~a~------------~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 448 (686)
|+.+-....-++ .++ .++..+... -.-....-+.++..|... . +.+.++....... .|. .
T Consensus 268 Lva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~tnk--~-~q~r~~~a~lp~~--~p~-~ 340 (652)
T KOG2376|consen 268 LVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALFTNK--M-DQVRELSASLPGM--SPE-S 340 (652)
T ss_pred hhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--H-HHHHHHHHhCCcc--Cch-H
Confidence 333221111111 111 111111111 011122223344444432 1 3444444433322 233 3
Q ss_pred hHhhhHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCCCHH
Q 044251 449 SYTALIHAYS--VGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWK--------LMMSEKVEGTRV 518 (686)
Q Consensus 449 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~ 518 (686)
.+.+++..+. +...+.+|.+++...-+....-.....-..++.....|+++.|.+++. .+.+.+..| .
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--G 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--h
Confidence 3444444332 233577888888887765332234666777788899999999999999 565555444 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH----HHHhcCCccHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKI--GLQPTLMTYNMLMN----AYGRGGQTSKLPQLLKEMATLNIKPDSVTYST 592 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~----~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 592 (686)
+...++..+.+.++.+.|..++.+..+. .-.+.......+++ .-.+.|+-++|..+++++.+.+ ++|..+...
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~ 497 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQ 497 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHH
Confidence 5566777788888777777777665421 00122234444443 3447899999999999999753 568899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 044251 593 MIYAFVRVRDFKRAFFYHKQM 613 (686)
Q Consensus 593 li~~~~~~g~~~~A~~~~~~m 613 (686)
++.+|++. +.+.|..+-+++
T Consensus 498 lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 498 LVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhc-CHHHHHHHhhcC
Confidence 99998864 678887776554
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.2e-05 Score=78.54 Aligned_cols=403 Identities=14% Similarity=0.035 Sum_probs=251.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
..+.....+..+...++-+.|+.....+... ..++..-..+...+-+.++-.++.-.+..... ..+.-. ..|
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t---~r~p~inlMla~l~~~g~r~~~~vl~ykevvr-ecp~aL----~~i 167 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPT---LRSPRINLMLARLQHHGSRHKEAVLAYKEVIR-ECPMAL----QVI 167 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCcc---ccchhHHHHHHHHHhccccccHHHHhhhHHHH-hcchHH----HHH
Confidence 4455567788888888888888766554322 23333333333333333333233222222221 010111 111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRK--NGRSAKEAWEFFEKMNRK-GVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~ 319 (686)
.++.+-+ +..+...-..|-...++|...+....+.+++. .++ ...+...+-.+... -.+-|......+.+.+...
T Consensus 168 ~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~-hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 168 EALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFK-HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcc-cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 1221111 01111111223233334444333333433332 222 23333333333322 2555778889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
|+.++|...|+.....++- ++.........+.+.|+++....+...+.... +-+...|-.-+......++++.|+.+-
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred cCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 9999999999998876321 33334444455677899998888887776542 123444554555556778899999888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK 479 (686)
Q Consensus 400 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 479 (686)
++.++.... +...|-.--..+...++. ++|.-.|+......+- +...|..|+..|...|.+.+|..+-+...+. .+
T Consensus 324 eK~I~~~~r-~~~alilKG~lL~~~~R~-~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~ 399 (564)
T KOG1174|consen 324 EKCIDSEPR-NHEALILKGRLLIALERH-TQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQ 399 (564)
T ss_pred HHHhccCcc-cchHHHhccHHHHhccch-HHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hh
Confidence 888765321 233332222334445454 7788899988776433 7889999999999999999999888777664 45
Q ss_pred CCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044251 480 PSIETYTALL-DAFR-RSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNM 557 (686)
Q Consensus 480 p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 557 (686)
.+..+.+.+. ..|. ...--++|.+++++.+... |.-....+.+...|...|+.+.++.++++.+.. .||....+.
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~ 476 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNH 476 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHH
Confidence 5666666653 3332 2234578999999988765 455667888899999999999999999997753 679999999
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 558 LMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 558 li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
|...+.-.+.+.+|...|..++. +.|+
T Consensus 477 Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 477 LGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 99999999999999999998885 3554
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.2e-06 Score=79.80 Aligned_cols=294 Identities=13% Similarity=0.089 Sum_probs=190.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHH-HHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY-NAA 241 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 241 (686)
...++..++..+++..++.+|++++..-.+..|. +......++..|.+..++..|...|+++.... |...-| -.-
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~ 84 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQ 84 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHH
Confidence 4455778899999999999999999998887653 34788889999999999999999999988732 332222 234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H-HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITA-M-RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~-~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
...+.+.+.+..|+.+...|... |+...-..-+.+ . ...++ +..+..++++....| +..+.+.......+.
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~D-l~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGD-LPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhccccc-CcchHHHHHhccCCC---ccchhccchheeecc
Confidence 67788899999999999988752 333222222222 2 22333 667777777765433 555666666777899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------------CCH----------
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK-------------PTS---------- 376 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------p~~---------- 376 (686)
|+++.|.+-|+...+.+--.....||..+..| +.|+++.|++...++.++|++ ||+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 99999999999988875444677888766555 779999999999999887753 111
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhH
Q 044251 377 -----ATFNILMDAYSRRMQPEIVEKLLLELQD-MGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSY 450 (686)
Q Consensus 377 -----~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 450 (686)
..+|.-...+.+.++.+.|.+.+..|.- ..-..|++|...+.-.=.. ++. ....+-+.-+....+- ...|+
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p-~~g~~KLqFLL~~nPf-P~ETF 313 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARP-TEGFEKLQFLLQQNPF-PPETF 313 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCc-cccHHHHHHHHhcCCC-ChHHH
Confidence 1122222334566777777777666631 1223345554443222111 122 1122233333333332 34566
Q ss_pred hhhHHHHHhcCCHHHHHHHHH
Q 044251 451 TALIHAYSVGGWHEKAYAAFE 471 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~ 471 (686)
..++-.||++.-++.|-+++.
T Consensus 314 ANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHh
Confidence 667777777777777766654
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=5.3e-07 Score=90.05 Aligned_cols=219 Identities=11% Similarity=-0.053 Sum_probs=150.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 177 DGLLGCCLYFYEWMRLQEPSLV--SPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDA 254 (686)
Q Consensus 177 ~g~~~~Al~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (686)
.+..+.++..+..++...+... .+..|..++.++.+.|+.++|+..|++..... +.+..+|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455677777777776543222 24667888888899999999999998887744 36788999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 255 WKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEME 333 (686)
Q Consensus 255 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 333 (686)
.+.|+...+. .| +..+|..+..++...|+ +++|.+.|++..+... +..........+...++.++|...+....
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~-~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGR-YELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999998876 44 45677777788888888 9999999999988653 32222222233445678999999987765
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044251 334 KKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK---GL--KP-TSATFNILMDAYSRRMQPEIVEKLLLELQDMG 406 (686)
Q Consensus 334 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 406 (686)
... +++...+ . ......|++..+ +.++.+.+. .+ .| ....|..+..++.+.|++++|...|++..+.+
T Consensus 193 ~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 432 2232222 2 223345555444 344444432 11 11 23468888999999999999999999988764
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=1.7e-05 Score=75.63 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=125.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 424 PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMK 503 (686)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 503 (686)
.|+. ..|+.....+.+..+- |...|..-..+|...|.+..|+.=++...+. -..+..++.-+-..+...|+.+..+.
T Consensus 168 ~GD~-~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 168 SGDC-QNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred CCch-hhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHH
Confidence 3444 5566666666665432 6666777777777777777777776666554 23345566666666777777777777
Q ss_pred HHHHHHhcCCCCCHH----HHHH---H------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCC
Q 044251 504 IWKLMMSEKVEGTRV----TFNI---L------LDGFAKQGQYLEARDVVSEFGKIGLQPTLMT---YNMLMNAYGRGGQ 567 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~----~~~~---l------i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~ 567 (686)
..++.++.+ |+.. .|-. + +......+++.++.+-.+...+....-.... +..+-.++...|+
T Consensus 245 ~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 245 EIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 777776553 2221 1111 1 1223456777788877777766543322333 3456667778899
Q ss_pred ccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 568 TSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 568 ~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
+.+|++.-.+.++ +.|| ..++-.-..+|.-...++.|+.-|+.+.+.+
T Consensus 323 ~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 323 FGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 9999999999985 4665 8888888899999999999999999998754
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=5.3e-07 Score=90.04 Aligned_cols=203 Identities=16% Similarity=0.089 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
..+......+...|++++|+..|+.++...|.. +.+|..++..+...|++++|+..|++..+..+ .+..+|..+..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDM--ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 446667778899999999999999999988754 58999999999999999999999999887433 578889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNE 324 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (686)
+...|++++|++.|+...+. .|+..........+...++ .++|.+.|.+..... .++...+ .+.. ...|+...
T Consensus 142 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~-~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLD-PKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCC-HHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCH
Confidence 99999999999999999876 4554322222222334455 899999997766432 2232222 2222 23455544
Q ss_pred HHHHHHHHHHC---CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 325 ALIIQMEMEKK---GI---PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATF 379 (686)
Q Consensus 325 A~~~~~~~~~~---g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 379 (686)
+ +.+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+.++. |.+-+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~-~~~e~ 273 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY-NFVEH 273 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-hHHHH
Confidence 3 244444321 11 113467999999999999999999999999987533 44433
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=6.8e-07 Score=80.61 Aligned_cols=199 Identities=15% Similarity=0.025 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
+....+.-.+.+.|++..|..-++++++.+|... .+|..+...|.+.|..+.|.+.|++.....+ .+..+.|.....
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--LAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHH
Confidence 3444566677777888888888888887776554 6777777777777777777777777666333 566677777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
++..|++++|...|++....-.-+ -..+|..+.-+..+.|+ .+.|...|++.++.... ...+...+.+...+.|++.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccch
Confidence 777777777777777776541111 12455555555556666 67777777777665432 3445555666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
.|...++.....|. ++....-..|..-...|+.+.+-++=..+..
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666655544 5555555566666666666666555444443
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=6.5e-06 Score=85.32 Aligned_cols=200 Identities=9% Similarity=-0.032 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEF-RD-AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT 278 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 278 (686)
..+..+...+...|+.+.+.+.+......... .+ ..........+...|++++|.+.+++..+.. +.|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 44455555555556555554444443321110 12 2222233445566778888888888776652 223333332 11
Q ss_pred HHHH----cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 044251 279 AMRK----NGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS 354 (686)
Q Consensus 279 ~~~~----~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 354 (686)
.+.. .+. ...+.+.+... .............+...+...|++++|...++...+.. +.+...+..+..+|...
T Consensus 85 ~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGM-RDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccC-chhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1211 222 34444444431 11122223444556667778888888888888888774 33567777888888888
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 355 NQLEEAEGLFQEMKTKGL-KPTS--ATFNILMDAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
|++++|..++++...... .++. ..|..+...+...|++++|..+++++...
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888888888888776432 1222 24556777888888888888888887543
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.93 E-value=4.3e-06 Score=90.02 Aligned_cols=186 Identities=11% Similarity=-0.047 Sum_probs=134.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 178 GLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKA 257 (686)
Q Consensus 178 g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (686)
.+...|+..|=+..+.++... .+|..++..|....+...|.+.|++.-+... -++..+.++...|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~~a--paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLA--PAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHH
Confidence 346778888888887776554 7899999999988888899999998876433 5778889999999999999999998
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044251 258 YEAMEANN-VRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKG 336 (686)
Q Consensus 258 ~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 336 (686)
.-...+.. ...-...|..+--.+.+.++ ...+...|+..++..+. |...|..++.+|...|++..|.++|.+.....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n-~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHN-LHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccc-hhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 43332221 00112234444444556666 88899999999887654 78899999999999999999999998887663
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 337 IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
+. +...---.....+..|.+.+|+..+.....
T Consensus 627 P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22 222222233345667888888888877654
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.91 E-value=8.1e-06 Score=84.59 Aligned_cols=201 Identities=13% Similarity=-0.008 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPR-ACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
...+..+...+...|+.+.|.+.+....+..+...++. ........+...|++++|...+++.... .+.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHH-h
Confidence 34555666777778889998888888887766555543 3334455677889999999999988774 3355555553 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 243 SGLFW----CGRYDDAWKAYEAMEANNVRPDH-VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFC 317 (686)
Q Consensus 243 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 317 (686)
..+.. .+..+.+.+.+... ....|+. .....+...+...|+ +++|.+.+++.++... .+...+..+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~al~~~p-~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQ-YDRAEEAARRALELNP-DDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH
Confidence 23333 45555555555541 1223443 344455567788888 9999999999998753 35678888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 318 DEGLKNEALIIQMEMEKKGIP-SNA--IVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~g~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
..|++++|...++........ ++. ..|..+...+...|++++|..+|++....
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999998876321 222 34567888999999999999999998644
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=8.6e-06 Score=95.75 Aligned_cols=336 Identities=10% Similarity=-0.046 Sum_probs=210.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHH
Q 044251 280 MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGI------PSN--AIVYNTLINAY 351 (686)
Q Consensus 280 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~--~~~~~~li~~~ 351 (686)
+...|+ ...+..+++.+.......+..........+...|+++++..++......-. .+. ......+...+
T Consensus 384 l~~~g~-~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 384 LFNQGE-LSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHhcCC-hHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 334555 666666665542111111223334455566788999999998887754311 111 12223334556
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHhc
Q 044251 352 CKSNQLEEAEGLFQEMKTKGLKPTS----ATFNILMDAYSRRMQPEIVEKLLLELQDMGLE---P--NAKSYTCLISAYG 422 (686)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---p--~~~~~~~ll~~~~ 422 (686)
...|++++|...+++....-...+. ...+.+..++...|++++|...+.+....... + ....+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6799999999999987763111121 24456677778899999999999887643111 1 1223344455566
Q ss_pred CCCChHHHHHHHHHHHHHc----CCC--C-ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHH
Q 044251 423 RPRKMSDMAADAFLRMKRV----GIK--P-TSHSYTALIHAYSVGGWHEKAYAAFENMLREE--IKP--SIETYTALLDA 491 (686)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p--~~~~~~~ll~~ 491 (686)
..|+. +.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 543 ~~G~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 543 AQGFL-QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HCCCH-HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 67776 7788888776543 211 1 12334556667778899999999998876531 112 22444556667
Q ss_pred HHHcCCHHHHHHHHHHHHhcC--CCCCHH---H-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 044251 492 FRRSGDTGMMMKIWKLMMSEK--VEGTRV---T-FNILLDGFAKQGQYLEARDVVSEFGKIGLQPT---LMTYNMLMNAY 562 (686)
Q Consensus 492 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~---~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~ 562 (686)
+...|+.+.|...+..+.... ...... . ....+..+...|+.+.|...+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999999998886531 111111 1 11123445568999999999877543221111 11245677788
Q ss_pred HhcCCccHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 563 GRGGQTSKLPQLLKEMATL----NIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~----g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
...|+.++|..+++++... |..++ ..++..+..++.+.|+.++|...+.++++..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999988753 33322 3466777788999999999999999998764
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.90 E-value=2.6e-05 Score=74.39 Aligned_cols=331 Identities=13% Similarity=0.094 Sum_probs=213.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHH-HHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAH-VYNAA 241 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l 241 (686)
..+-...+...+..+|.+..|+..|..+.+.+|... .++...+..|...|+...|+.=|.++.+.. ||.. +..--
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y--~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY--QAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH--HHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHh
Confidence 445666788888899999999999999988766432 333444557778888888888888777632 4422 22233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
...+.+.|.+++|..=|+..... .|+..+ ...+..+... .++-+. ....+..+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~--~~s~~~---~~eaqskl~~-~~e~~~----------------l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH--EPSNGL---VLEAQSKLAL-IQEHWV----------------LVQQLKSASGSGD 170 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc--CCCcch---hHHHHHHHHh-HHHHHH----------------HHHHHHHHhcCCc
Confidence 45788899999999999988876 443221 1111111111 122222 2223344556788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLE 401 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 401 (686)
...|......+++.. +-|+..|..-..+|...|++..|+.-++...+..-. +..++.-+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 888888888888763 347788888888999999999988877776655333 555566677778888999988888888
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS 481 (686)
Q Consensus 402 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 481 (686)
.++. .||...+-.. |- .+ .+..+.++.|. .....++|.++++..+...+......
T Consensus 249 CLKl--dpdHK~Cf~~---YK---kl-kKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 249 CLKL--DPDHKLCFPF---YK---KL-KKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHcc--CcchhhHHHH---HH---HH-HHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 8764 4543322111 11 00 22222222222 23456677777777777776533222
Q ss_pred HH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 482 IE---TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 482 ~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
.. .+..+-.++...|++.+|++.-.+++... +.|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 22 23344455566788888888888887665 5567788778888888888888888888887665
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=1.5e-06 Score=78.41 Aligned_cols=185 Identities=16% Similarity=0.067 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEANNVRPD-HVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKS 315 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 315 (686)
+...|...|...|++..|.+-+++.++. .|+ ..+|..+...|.+.|. .+.|.+.|++.+..... +..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge-~~~A~e~YrkAlsl~p~-~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGE-NDLADESYRKALSLAPN-NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCC-hhhHHHHHHHHHhcCCC-ccchhhhhhHH
Confidence 3444555666666666666666666555 333 3455555556666665 56666666666655322 45556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 316 FCDEGLKNEALIIQMEMEKK-GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
+|..|++++|.+.|+..... ...--..+|..+.-+..+.|+++.|...|++.++.... ...+.-.+.......|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 66666666666666665543 12223445555555666666666666666666554322 22334445555556666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCh
Q 044251 395 VEKLLLELQDMGLEPNAKSYTCLISAYGRPRKM 427 (686)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 427 (686)
|..+++.....+. ++....-..|..-...|+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccH
Confidence 6666666555443 5555555555555555443
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5e-05 Score=77.06 Aligned_cols=400 Identities=15% Similarity=0.067 Sum_probs=236.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
.......|+++.|+.+|-.++...|..+ ..|..-..+|+..|++++|++=-.+.....+ .=...|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nh--vlySnrsaa~a~~~~~~~al~da~k~~~l~p-~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNH--VLYSNRSAAYASLGSYEKALKDATKTRRLNP-DWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCcc--chhcchHHHHHHHhhHHHHHHHHHHHHhcCC-chhhHHHHhHHHHHhccc
Confidence 5567789999999999999999877643 7888888999999999998776655444222 235678899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHH------HHHHC---CCCCCHHHHHHHHHHHHh--
Q 044251 251 YDDAWKAYEAMEANNVRPD-HVTCSIMITAMRKNGRSAKEAWEFFE------KMNRK---GVKLSQEVVGALMKSFCD-- 318 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~------~m~~~---~~~~~~~~~~~li~~~~~-- 318 (686)
+++|+..|.+-++. .|+ ...++.+..++... ..+.+.|. .+... ........|..++..+-+
T Consensus 86 ~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~----~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 86 YEEAILAYSEGLEK--DPSNKQLKTGLAQAYLED----YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHH----HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999998776 444 45555555555211 00111110 00000 000011122222221111
Q ss_pred --------cCCHHHHHHHHHHH-----HHC-------CCCC----------------------CHHHHHHHHHHHHHcCC
Q 044251 319 --------EGLKNEALIIQMEM-----EKK-------GIPS----------------------NAIVYNTLINAYCKSNQ 356 (686)
Q Consensus 319 --------~g~~~~A~~~~~~~-----~~~-------g~~~----------------------~~~~~~~li~~~~~~g~ 356 (686)
-.++..+.-.+... ... +..| -..-.-.+..+..+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 00011111111000 000 0001 12235667777778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------HhcCCCChHH
Q 044251 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLIS-------AYGRPRKMSD 429 (686)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-------~~~~~~~~~~ 429 (686)
++.|++-+....+.. -+..-++....+|...|.+..+...-....+.|.. ....|+.+-. +|.+.++. +
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~-~ 315 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY-E 315 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH-H
Confidence 888888888877764 25555666667777777777766666665555432 2233333333 34444343 6
Q ss_pred HHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 430 MAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI-ETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 430 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
.++..|.+.......|+ ...+....++++...+...- +.|.. .-...-...+.+.|++..|+..|.++
T Consensus 316 ~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 67777777655433322 22333444555555544433 22322 22222356677788888888888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHH
Q 044251 509 MSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSV 588 (686)
Q Consensus 509 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 588 (686)
+... +.|...|....-+|.+.|.+..|+.-.+..++.. ++....|.-=..++.-..++++|.+.|.+.++. .|+..
T Consensus 385 Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~ 460 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNA 460 (539)
T ss_pred HhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhH
Confidence 8776 6778888888888888888888888777777664 445566666666777777888888888888764 45544
Q ss_pred HHHHHHHHHH
Q 044251 589 TYSTMIYAFV 598 (686)
Q Consensus 589 ~~~~li~~~~ 598 (686)
-+...+.-|.
T Consensus 461 e~~~~~~rc~ 470 (539)
T KOG0548|consen 461 EAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHH
Confidence 4433333333
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=4e-06 Score=78.19 Aligned_cols=196 Identities=15% Similarity=0.062 Sum_probs=145.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHH
Q 044251 203 CSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIM-ITAMR 281 (686)
Q Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 281 (686)
+..++..+.+..++.+|++++..-.++.. .+......|..+|....++..|-+.|+++-.. .|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 45556666788899999999988777443 67888899999999999999999999999775 6777666543 35566
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 282 KNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAE 361 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 361 (686)
+.+. +..|+++...|.... .........-.......+++..+..++++....| +..+.+.......+.|+++.|+
T Consensus 90 ~A~i-~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACI-YADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred Hhcc-cHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 7777 889999998886531 1111222222223345788888888888776433 6667777777788999999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 362 GLFQEMKTK-GLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLE 408 (686)
Q Consensus 362 ~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 408 (686)
+-|+...+- |.. ....|+..+- ..+.++.+.|+++..++.+.|++
T Consensus 165 qkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 999998886 455 5567885554 45779999999999999888754
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=2.2e-05 Score=92.27 Aligned_cols=193 Identities=11% Similarity=-0.064 Sum_probs=81.4
Q ss_pred HHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--C----CCCHH--HHHHHHHHHH
Q 044251 210 LGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANN--V----RPDHV--TCSIMITAMR 281 (686)
Q Consensus 210 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--~~~~ll~~~~ 281 (686)
+...|+++.+...++.++......+..........+...|++++|..++......- . .+... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 33445555555555554321111122222333444455566666666655543220 0 01111 1111112233
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHH
Q 044251 282 KNGRSAKEAWEFFEKMNRKGVKLSQ----EVVGALMKSFCDEGLKNEALIIQMEMEKK----GIP-SNAIVYNTLINAYC 352 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~ 352 (686)
..|+ +++|...+++..+.-...+. ...+.+...+...|++++|...+.+.... |.. ....++..+...+.
T Consensus 464 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGD-PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCC-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 4444 56666666655542111111 12333444455566666666555554432 100 01123334444555
Q ss_pred HcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 353 KSNQLEEAEGLFQEMKTK----GLK--P-TSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
..|++++|...+++.... +.. + ....+..+..++...|++++|...+.+..
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 566666666655554331 110 0 11223334444455566666665555543
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.8e-05 Score=80.26 Aligned_cols=405 Identities=14% Similarity=0.125 Sum_probs=240.3
Q ss_pred HHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 044251 207 FPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPD-HVTCSIMITAMRKNGR 285 (686)
Q Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 285 (686)
..+....|+++.|+.+|.......+ +|-..|..-..+|+..|++++|++=-.+-++. .|+ .-.|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 3455688999999999998777555 58999999999999999999998876666655 566 4689999999988998
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHC---CCCCCHHHHHHHHHHHHHc-----
Q 044251 286 SAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEAL---IIQMEMEKK---GIPSNAIVYNTLINAYCKS----- 354 (686)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~---g~~~~~~~~~~li~~~~~~----- 354 (686)
+++|+.-|.+-++.... +...++.+..++.......+.. .++..+... ........|..++..+-+.
T Consensus 86 -~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 -YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred -HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999999887533 6667777777662111000000 111111100 0000111223333222111
Q ss_pred -----CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHH
Q 044251 355 -----NQLEEAEGLFQEM-----KTKG-------LKP------------T----------SATFNILMDAYSRRMQPEIV 395 (686)
Q Consensus 355 -----g~~~~A~~~~~~m-----~~~g-------~~p------------~----------~~~~~~ll~~~~~~~~~~~a 395 (686)
.++..|.-++... ...| ..| | ..-...++++..+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0111111111100 0000 011 0 01133456666666777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC--C----hhhHhhhHHHHHhcCCHHHHHHH
Q 044251 396 EKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKP--T----SHSYTALIHAYSVGGWHEKAYAA 469 (686)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~A~~~ 469 (686)
.+-+....+.. -+...++..-.+|...+.. ..+........+.|-.. + ...+..+..+|.+.++++.|+..
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~-~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKY-AECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHH-HHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777766653 2333344444445544433 33444333333333210 0 11222234456666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 044251 470 FENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ 549 (686)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (686)
|.+.+.....|+. ..+....+++........-.+..- ..-.-.-...+.+.|++..|...|.++++.. +
T Consensus 321 ~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 321 YQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 7776654333322 222333344444433333222111 1112222566778999999999999999887 5
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHH
Q 044251 550 PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV-KSYEK 627 (686)
Q Consensus 550 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ 627 (686)
-|...|....-+|.+.|.+..|+.-.+...+. .|+ ...|..=+.++....+|+.|.+.|++.++.. |+. +....
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~ 465 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDG 465 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHH
Confidence 58999999999999999999999988888865 443 5666666777788889999999999998765 544 44455
Q ss_pred HHHHHHh
Q 044251 628 LRSILDV 634 (686)
Q Consensus 628 l~~~l~a 634 (686)
+.++..+
T Consensus 466 ~~rc~~a 472 (539)
T KOG0548|consen 466 YRRCVEA 472 (539)
T ss_pred HHHHHHH
Confidence 5555544
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.4e-05 Score=84.38 Aligned_cols=381 Identities=11% Similarity=0.089 Sum_probs=211.5
Q ss_pred CHHHHHHHHH--HHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 199 SPRACSVLFP--VLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIM 276 (686)
Q Consensus 199 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 276 (686)
++.+...++. .|..-|+.|.|.+-.+.+ .+..+|..+...+.+.++++-|.-.+-.|...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~a------------ 786 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNA------------ 786 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhh------------
Confidence 3344444444 355667777776655543 45667777777777777777776666665432
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 277 ITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQ 356 (686)
Q Consensus 277 l~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 356 (686)
..-+.+++..+.|- .+-....-.....|.+++|+.+|++.... ..|=..|-..|.
T Consensus 787 ------------RgaRAlR~a~q~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~ 841 (1416)
T KOG3617|consen 787 ------------RGARALRRAQQNGE----EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGM 841 (1416)
T ss_pred ------------hhHHHHHHHHhCCc----chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhccc
Confidence 01112222333221 11111222334678888888888877653 334455667788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044251 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFL 436 (686)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~ 436 (686)
|++|+++-+.=-...+ ..||.....-+...++.+.|+++|++... +--..+..|. ........+.+
T Consensus 842 w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~----hafev~rmL~-------e~p~~~e~Yv~ 907 (1416)
T KOG3617|consen 842 WSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGV----HAFEVFRMLK-------EYPKQIEQYVR 907 (1416)
T ss_pred HHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH-------hChHHHHHHHH
Confidence 8888887654322222 23566666666777888888888876521 1111121111 11122333333
Q ss_pred HHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 044251 437 RMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT 516 (686)
Q Consensus 437 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 516 (686)
++. |...|......+-..|+.+.|+.+|..... |..+++..+-.|+.++|-++-++- .|
T Consensus 908 ~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd 966 (1416)
T KOG3617|consen 908 RKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GD 966 (1416)
T ss_pred hcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------cc
Confidence 332 556777777777788888888888887654 556667777778888887775542 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHC
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG---------------QTSKLPQLLKEMATL 581 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---------------~~~~A~~l~~~m~~~ 581 (686)
......|...|...|++.+|..+|-+... +...|..|..++ +.-.|.++|++.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~--- 1034 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL--- 1034 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---
Confidence 55666778888888888888888776532 222222222211 222333444432
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHC--CCCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHH
Q 044251 582 NIKPDSVTYSTMIYAFVRVRDFKRAFFYHK--------QMVKS--GQVPDVKSYEKLRSILDVKVATKNRRDKSAILGII 651 (686)
Q Consensus 582 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~--g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~ 651 (686)
|.. +...+..|.+.|.+.+|+++-= +++.. .-..|+...+.+.+.+.................-+
T Consensus 1035 g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1035 GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 211 2223345566666666655421 12222 22356777777777775443333333332233333
Q ss_pred HhcccchhhcccchhHHHHHHHh
Q 044251 652 NSKMGMVKAKKKGKKDEFWKYKK 674 (686)
Q Consensus 652 ~~~~~~~~~~~~~a~~~f~~~~~ 674 (686)
....++|+++.-.-.+.|-+++-
T Consensus 1110 ~~AlqlC~~~nv~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1110 SGALQLCKNRNVRVTEEFAELMT 1132 (1416)
T ss_pred HHHHHHHhcCCCchhHHHHHhcC
Confidence 34456677777666666666553
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.79 E-value=0.00031 Score=71.33 Aligned_cols=187 Identities=15% Similarity=0.083 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHhhhHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 428 SDMAADAFLRMKRVGIKPTSHSYTALIHAYSV---GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKI 504 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 504 (686)
.+++..+++.....-..-+..+|..+...--. .+..+.....+++++..-..--.-+|..+++...+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 35667777766554333344455444332211 123566667777776542222235688888888899999999999
Q ss_pred HHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 505 WKLMMSEKVEG-TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 505 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
|.++.+.+..+ .+.++++++..||. ++...|.++|+--++.- ..++.--...+.-+...++-..|..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999987666 78889999988775 78899999999855332 33445556677888889999999999999998877
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 584 KPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 584 ~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.|| ..+|..++.-=...|+...++++-+++...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 776 579999999889999999999998887654
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=5.6e-05 Score=79.92 Aligned_cols=250 Identities=12% Similarity=0.067 Sum_probs=144.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCC--------CCHHHHHHHHHH
Q 044251 173 LMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEF--------RDAHVYNAAISG 244 (686)
Q Consensus 173 ~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~ 244 (686)
.|..-|+.+.|.+-.+.+... .+|..++.++.+..++|-|.-.+..|...+.. .+...--.....
T Consensus 737 fyvtiG~MD~AfksI~~IkS~-------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD-------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh-------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 345678888888877777643 78999999999999998887766665442110 000111222333
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNE 324 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (686)
....|..++|+.+|++.+. |..|=..|...|. +++|.++-+.--+.. =..||......+-..++.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~-w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGM-WSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhccc-HHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 4456677777777776654 3334444555565 777766655332221 12455556666666677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 325 ALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 325 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
|++.|++.... --.++..| ..++....++.+.+. |...|.-....+...|+.+.|+.+|....+
T Consensus 877 AleyyEK~~~h----afev~rmL------~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 877 ALEYYEKAGVH----AFEVFRML------KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHhcCCh----HHHHHHHH------HhChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 77666543211 11111111 112222222333322 445555566666677888888887776543
Q ss_pred cCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHH
Q 044251 405 MGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENML 474 (686)
Q Consensus 405 ~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 474 (686)
|-++++..|-.|+. ++|.++-++- -|......|.+.|-..|++.+|...|.+..
T Consensus 941 ---------~fs~VrI~C~qGk~-~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKT-DKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhheeeEeeccCc-hHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44556666666665 5666555442 255666677788888888888888876654
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=0.00012 Score=79.13 Aligned_cols=343 Identities=14% Similarity=0.139 Sum_probs=192.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQE-PSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
+++.....+.++...+...+-+++++++.-.. ++..+...-+.++....+. +..+.....+++..... | .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-P------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-h------hH
Confidence 45555666666666666666666666665442 2222222223333322232 23344555555443221 1 12
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
......++-+++|..+|+... .+..+.+.||.-. .+.+.|.++-++.. .+.+|..+.++-.+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i----~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENI----GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHh----hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 334445555666666666543 2333333333322 12455555444332 45667777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLE 401 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 401 (686)
+.+|.+-|-+. .|+..|..++....+.|.|++-.+++...++..-.|... +.|+-+|++.++..+.++.+
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--
Confidence 77776655322 266677777777777777777777777666665554443 34677777777766655443
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS 481 (686)
Q Consensus 402 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 481 (686)
.-||......+-+-|...+.. +.|.-+|..+ .-|..|...+...|++..|.+.-++. .+
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y-~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMY-EAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhh-HHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 245666666666666665443 5555555433 34666667777777777776654433 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 561 (686)
..||..+-.+|...+.+.-| +|-..++-..+.-+.-|+..|...|-+++-+.+++..+-+. +....+|+-|.-.
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAIL 1322 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHH
Confidence 56676666666665554433 22223334445556777778888888888887777654322 2244566666666
Q ss_pred HHhc
Q 044251 562 YGRG 565 (686)
Q Consensus 562 ~~~~ 565 (686)
|.+-
T Consensus 1323 Ysky 1326 (1666)
T KOG0985|consen 1323 YSKY 1326 (1666)
T ss_pred HHhc
Confidence 6553
No 100
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=1e-05 Score=80.81 Aligned_cols=212 Identities=10% Similarity=0.036 Sum_probs=152.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRAR-MGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
.+-..+...++.++|+.++..+++..|... .+|.....++.+.| .+++++..++++..... .+..+|+....++.+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~y--taW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNY--TVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhH--HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHH
Confidence 444455567788999999999998877655 67777777777777 57889999988887433 677788877767777
Q ss_pred cCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH
Q 044251 248 CGRY--DDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE---GLK 322 (686)
Q Consensus 248 ~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~ 322 (686)
.|+. ++++.+++.+.+.. +-+..+|+....++...|+ ++++++.++++++.++. +..+|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~-~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGG-WEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 7763 67788888887764 4567888888888888887 89999999999988755 667777766655554 222
Q ss_pred ----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 323 ----NEALIIQMEMEKKGIPSNAIVYNTLINAYCKS----NQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR 388 (686)
Q Consensus 323 ----~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (686)
+++......++... +-+...|+-+...+... +...+|.+.+.+....++. +......|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 45666666666663 34777888887777662 3445677777776664433 55667777777764
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=2.7e-06 Score=86.68 Aligned_cols=217 Identities=15% Similarity=0.110 Sum_probs=113.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCChHH
Q 044251 351 YCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP-NAKSYTCLISAYGRPRKMSD 429 (686)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~ 429 (686)
+.+.|++.+|.-.|+......+. +...|..|...-...++-..|+..+++.++. .| |....-.|.-.|...|.. .
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q-~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQ-N 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhH-H
Confidence 34556666666666665555332 4445665555555555555566555555554 23 333344444444444332 3
Q ss_pred HHHHHHHHHHHcCCCCChhhHhhhH-----------HHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCC
Q 044251 430 MAADAFLRMKRVGIKPTSHSYTALI-----------HAYSVGGWHEKAYAAFENMLR-EEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 430 ~A~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
.|...++.-....++ |..+. ..+.....+....++|-++.. .+..+|......|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 455555554433211 00000 011111122333344444332 2323555556666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHH
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT-LMTYNMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~ 576 (686)
+++|...|+.++..+ |.|..+||.|.-.++...+..+|+..|++++++. |+ +.+.-.|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 777777776666655 5566667777666666666677777777666543 32 3344446666666666666666665
Q ss_pred HHH
Q 044251 577 EMA 579 (686)
Q Consensus 577 ~m~ 579 (686)
.++
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 544
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=6.1e-07 Score=88.26 Aligned_cols=253 Identities=14% Similarity=0.078 Sum_probs=153.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 044251 352 CKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMA 431 (686)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A 431 (686)
.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+....+. +.+
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~-e~~ 85 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK-ESA 85 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH-HCH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch-HHH
Confidence 34577777775555 222211122334455667777777766543 2332222 55555554444444432222 334
Q ss_pred HHHHHHHHHcCCC-CChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 432 ADAFLRMKRVGIK-PTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 432 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
..-++........ .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3333332222211 12233333345667788999998887542 4667778888899999999999999999876
Q ss_pred cCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 511 EKVEGTRVTFNILLDGFA----KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 511 ~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
.. .| .+...++.++. ..+.+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+....+ +-|
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 53 33 33334444443 234689999999998654 46788999999999999999999999999987643 225
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHH
Q 044251 587 SVTYSTMIYAFVRVRDF-KRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ 623 (686)
+.++..++-+....|+. +.+.+++.++.... |+..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~--p~h~ 270 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSN--PNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT--TTSH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC--CCCh
Confidence 77888888888888888 66778888877643 5544
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=1.4e-05 Score=81.74 Aligned_cols=237 Identities=14% Similarity=0.071 Sum_probs=176.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCH
Q 044251 156 PDGIGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDA 235 (686)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 235 (686)
.+...-++...-....-.+.+.|.+.+|.-.|+.+..++|... ++|..|+...+..++-..|+..+.+..+..+ .|.
T Consensus 277 ~e~Np~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~ha--eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~Nl 353 (579)
T KOG1125|consen 277 SEENPYIDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHA--EAWQKLGITQAENENEQNAISALRRCLELDP-TNL 353 (579)
T ss_pred cccCcccCCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHH--HHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccH
Confidence 3334445555566677788899999999999999999988665 8999999999999998899999988877443 688
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-----------HHHHcCCCHHHHHHHHHHHH-HCCCC
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT-----------AMRKNGRSAKEAWEFFEKMN-RKGVK 303 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-----------~~~~~g~~~~~a~~~~~~m~-~~~~~ 303 (686)
.+.-+|...|...|.-..|+++|+...... |. |..+.. .+..... +....++|-++. ..+..
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~-l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSH-LAHIQELFLEAARQLPTK 427 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHH-HHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998876532 11 000000 0001111 334445555544 34445
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 044251 304 LSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA-TFNIL 382 (686)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 382 (686)
+|+.+...|.-.|.-.|+++.|...|+..+... |-|..+||-|...++...+.++|+..|++.++. +|+-+ ....|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh
Confidence 788888888888888999999999999988874 447888999999999888999999999988875 45433 44447
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 044251 383 MDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 383 l~~~~~~~~~~~a~~~~~~m~~ 404 (686)
.-.|...|.+++|.+.|-..+.
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHH
Confidence 7788889999998888776643
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.65 E-value=0.00018 Score=75.14 Aligned_cols=373 Identities=13% Similarity=0.087 Sum_probs=185.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC 248 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (686)
..+.+......|..|+.+++.+..+.... -.|..+...|+..|+++.|.++|.+... ++-.|.+|.+.
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~s---~yy~~iadhyan~~dfe~ae~lf~e~~~---------~~dai~my~k~ 804 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTAS---GYYGEIADHYANKGDFEIAEELFTEADL---------FKDAIDMYGKA 804 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhcccc---ccchHHHHHhccchhHHHHHHHHHhcch---------hHHHHHHHhcc
Confidence 33444455556666666666666553221 3456666667777777777777665322 45566677777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 249 GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALII 328 (686)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (686)
|+|+.|.++-++.... ......|.+-..-+-+.|+ +.+|.++|-.+. .|+ ..|.+|-+.|..+..+++
T Consensus 805 ~kw~da~kla~e~~~~--e~t~~~yiakaedldehgk-f~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECHGP--EATISLYIAKAEDLDEHGK-FAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred ccHHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcc-hhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHH
Confidence 7777776666555421 2333445555555556666 666665553321 122 234566666666666665
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 329 QMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLE 408 (686)
Q Consensus 329 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 408 (686)
..+--.. .-..|.-.+..-|-..|++..|..-|-+.. -|...++.|...+.|++|.++-+. .|-
T Consensus 873 v~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt---egg- 936 (1636)
T KOG3616|consen 873 VEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT---EGG- 936 (1636)
T ss_pred HHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc---ccc-
Confidence 5442111 112344455556666677766666554322 244455555555666655544332 111
Q ss_pred CCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044251 409 PNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTAL 488 (686)
Q Consensus 409 p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 488 (686)
.|..-- ++-.+++.-+- +.|.+++.+.- ....-+..-+..+-++-|+++-+-..+.. .|.+ ...+
T Consensus 937 ~n~~k~--v~flwaksigg-daavkllnk~g---------ll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~ 1001 (1636)
T KOG3616|consen 937 ANAEKH--VAFLWAKSIGG-DAAVKLLNKHG---------LLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKL 1001 (1636)
T ss_pred ccHHHH--HHHHHHHhhCc-HHHHHHHHhhh---------hHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHH
Confidence 111111 11122222111 33444443321 11222334455566666666655444432 2222 2223
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH-------------------HHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFN-------------------ILLDGFAKQGQYLEARDVVSEFGKIGLQ 549 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------------------~li~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (686)
..-+...|+++.|.+-|-+.++.+. -+ .||. ..+.++.+.+++..|.++-+.- .
T Consensus 1002 a~~ledegk~edaskhyveaiklnt-yn-itwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h-----~ 1074 (1636)
T KOG3616|consen 1002 AMFLEDEGKFEDASKHYVEAIKLNT-YN-ITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH-----C 1074 (1636)
T ss_pred hhhhhhccchhhhhHhhHHHhhccc-cc-chhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh-----C
Confidence 3345667777777776666655431 00 0110 1123344455555555544321 1
Q ss_pred CC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 550 PT--LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 550 p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
|+ +..|..-..+-...|++-+|..++-+.. +|+. .++.|...+-|..|+++.+.
T Consensus 1075 ~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1075 EDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred hhhhHHHHhhhhhccccccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHHh
Confidence 22 2234444444556677777777665443 5663 34455666777777776553
No 105
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.62 E-value=0.0001 Score=77.02 Aligned_cols=326 Identities=14% Similarity=0.147 Sum_probs=174.3
Q ss_pred HHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044251 204 SVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKN 283 (686)
Q Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 283 (686)
...+.+|....++++++.+-+.. +.|.-...-.+.++.+...|+-++|-++- .. .-|. ...|..|.+.
T Consensus 561 e~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s--dgd~---laaiqlyika 628 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK----ES--DGDG---LAAIQLYIKA 628 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc----cc--cCcc---HHHHHHHHHc
Confidence 44566777777788887766543 33333344455556666667666664431 11 1111 2345556666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------CCCCCH
Q 044251 284 GRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK----------------------GIPSNA 341 (686)
Q Consensus 284 g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------g~~~~~ 341 (686)
|.....+...+..-. +..|......+..++.+...++.|-.+|+++... .+|..+
T Consensus 629 ~~p~~a~~~a~n~~~---l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~ev 705 (1636)
T KOG3616|consen 629 GKPAKAARAALNDEE---LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEV 705 (1636)
T ss_pred CCchHHHHhhcCHHH---hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHH
Confidence 663322222222111 1123333333333333333333333333332110 011111
Q ss_pred HHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 342 IVY-NTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA 420 (686)
Q Consensus 342 ~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 420 (686)
+.. ......+...|+++.|+.-|-+.. .....+.+.....+|.+|+.+++.+++... -...|..+...
T Consensus 706 v~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadh 774 (1636)
T KOG3616|consen 706 VKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADH 774 (1636)
T ss_pred hhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHH
Confidence 111 122233344455555554443221 122244555667788888888888876633 33456677777
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 421 YGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGM 500 (686)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 500 (686)
|+..|++ +.|.++|-+.- .++-.|.+|.+.|+|+.|.++-.+.. |.......|-.-..-+-..|++.+
T Consensus 775 yan~~df-e~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 775 YANKGDF-EIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred hccchhH-HHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhh
Confidence 8888776 77887775432 35556788889999988888776653 234445566666666777888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 501 MMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 501 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
|.++|-.+- .|+. .|.+|-+.|..+..+++..+-. | ..-..|.-.+..-|-..|++..|..-|-+..
T Consensus 843 aeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h--~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 843 AEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH--G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC--h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 887765442 3332 3566777777777777766532 1 1123344555666666777777766655443
No 106
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.0018 Score=70.06 Aligned_cols=429 Identities=13% Similarity=0.052 Sum_probs=232.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
|.-....+++..|++....+++..|......+ .-+-.+.+.|+.++|..+++.....+. .|..+...+-..|...|+
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~v--LkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKV--LKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhh
Confidence 44556778899999999999999887642222 223345689999999998888766444 488899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------C
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE----------G 320 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------g 320 (686)
.++|..+|+..... .|+..-...+..+|.+.+. +.+-.+.--+|.+. .+-+...+=+++..+... -
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~-yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKS-YKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 99999999998866 6777777777777777665 44433333333332 222333333333333321 1
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 321 LKNEALIIQMEMEKKG-IPSNAIVYNTLINAYCKSNQLEEAEGLFQ-EMKTKGLKPTSATFNILMDAYSRRMQPEIVEKL 398 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 398 (686)
-+.-|.+.++.+.+.+ .--+..-.......+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1234566666666654 22222223334445556778888888873 333332333444445556666677777777777
Q ss_pred HHHHHHcCCCCCHH-----HHHHHHHH--------hcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHH---HhcCC
Q 044251 399 LLELQDMGLEPNAK-----SYTCLISA--------YGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY---SVGGW 462 (686)
Q Consensus 399 ~~~m~~~~~~p~~~-----~~~~ll~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~ 462 (686)
-.++...|.. |-. .+..+-.. +...+.. +...+..++..... ....|-+-+.++ -.-|+
T Consensus 249 ~~~Ll~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l-~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 249 SSRLLEKGND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKSL-DECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGD 323 (932)
T ss_pred HHHHHHhCCc-chHHHHHHHHHHHHhcccccchhhhhhhhhH-HHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCC
Confidence 7777666433 111 12222211 1111111 22222222222110 011111111111 12244
Q ss_pred HHHHHHHH------------------------------HHHHHcCCCCCHH-------HHHHHHHHHHHcCC-----HHH
Q 044251 463 HEKAYAAF------------------------------ENMLREEIKPSIE-------TYTALLDAFRRSGD-----TGM 500 (686)
Q Consensus 463 ~~~A~~~~------------------------------~~m~~~~~~p~~~-------~~~~ll~~~~~~g~-----~~~ 500 (686)
.+++.-.| ..... ..++.. -+...+......|. -+.
T Consensus 324 ~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~--~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 324 SEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVL--ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred hHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhc--cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 44433222 11111 111111 01122222222232 122
Q ss_pred HHHHHHHHH---hcC------CCCCH---------HHHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 501 MMKIWKLMM---SEK------VEGTR---------VTFNILLDGFAKQGQYL---EARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 501 a~~~~~~~~---~~~------~~~~~---------~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
...++.+.. +.| +-|+. -+-+.|++.|.+.++.. +|+-+++...... +.|..+--.||
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLi 480 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHH
Confidence 233332221 112 12221 24567888888888765 4455555554443 34666667788
Q ss_pred HHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 560 NAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
..|+-.|-+..|.++++.+.-+++.-|..-|.. ...+...|++..+...+....+
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHH
Confidence 888888999999999998877777666444332 2345566777777766665543
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.60 E-value=3.9e-06 Score=82.66 Aligned_cols=253 Identities=13% Similarity=0.058 Sum_probs=156.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 315 SFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 315 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
.+.-.|.+..++.-.+ ...............+.+++...|+++.++ .++.... .|.......+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444677777765444 222222223444555677788888877544 3333332 5566666555554444344555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHH
Q 044251 395 VEKLLLELQDMGLEPNAKSYTCLI-SAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENM 473 (686)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 473 (686)
+..-++.........+..++..+. ..+...|+. +.|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~-~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDY-EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH-HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH-HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555444443333222232333332 345555554 7777766542 25666677888999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 044251 474 LREEIKPSIETYTALLDAFRR----SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ 549 (686)
Q Consensus 474 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (686)
.+. ..|. +...+..++.. .+.+..|..+|+++.+. ..++..++|.+.-++...|++++|.+++.+..... +
T Consensus 158 ~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 873 4444 34445444432 34689999999998654 57889999999999999999999999999987665 4
Q ss_pred CCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHCCCCCC
Q 044251 550 PTLMTYNMLMNAYGRGGQT-SKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 550 p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd 586 (686)
-++.+...++.+....|+. +.+.+++.++... .|+
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~ 268 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN 268 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence 4778888888888888887 5677888888863 455
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=2.9e-05 Score=86.68 Aligned_cols=228 Identities=10% Similarity=0.006 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPS---LVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYN 239 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 239 (686)
+.-.|...+....+.+..+.|.+++++++..--. .--...|.++++....-|.-+...++|+++.+. .....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4455556666667777777777777777765211 111245666666655666666677777776653 13345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 044251 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKL-SQEVVGALMKSFCD 318 (686)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~ 318 (686)
.|...|.+.+++++|-++|+.|.+.- ......|...+..+.+..+ .+.|..++.++++.-.+- ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne-~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNE-AEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccH-HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 77777777777777777777776541 2345567777777766665 677777777776642221 22334444555556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 044251 319 EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTS--ATFNILMDAYSRRMQPEIV 395 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a 395 (686)
.|+.+.+..+|+..+.. .|-....|+.+|++-.+.|+.+.+..+|++....++.|-. ..|...+..=-..|+-+.+
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 77777777777777665 3335667777777777777777777777777776655432 2444444444444444333
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=2.6e-05 Score=81.84 Aligned_cols=239 Identities=12% Similarity=0.051 Sum_probs=186.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044251 338 PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCL 417 (686)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (686)
+|--..-..+...+...|-...|+.+|+++. .|.-++.+|+..|+..+|..+..+..+. +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444567788889999999999998754 4667889999999999999999988873 7888999888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044251 418 ISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
.+..... ...++|.++++..... .-..+.......++++++.+.|+.-.+. .+--..+|..+.-+..+.++
T Consensus 464 GDv~~d~-s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDP-SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccCh-HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhh
Confidence 8877765 5568888888876442 1122222234478999999999988774 23456788888888889999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKE 577 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 577 (686)
++.+.+.|...+... +.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999988765 6778899999999999999999999999999887 55778899999999999999999999998
Q ss_pred HHHCCC-CCCHHHHHHHHHHHH
Q 044251 578 MATLNI-KPDSVTYSTMIYAFV 598 (686)
Q Consensus 578 m~~~g~-~pd~~~~~~li~~~~ 598 (686)
+..... .-|..+...++....
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHH
Confidence 875321 125555555555443
No 110
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=5.8e-05 Score=75.38 Aligned_cols=206 Identities=11% Similarity=0.046 Sum_probs=144.7
Q ss_pred ccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCC-HHH
Q 044251 212 RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG-RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRS-AKE 289 (686)
Q Consensus 212 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~~ 289 (686)
..++.++|+.+++++....+ .+..+|+....++...| ++++++..++++...+ +-+..+|+.....+.+.+.. .++
T Consensus 49 ~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 45677789999888877433 57778887777777877 6799999999988764 34556777666566666652 367
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCH----HHHHH
Q 044251 290 AWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS---NQL----EEAEG 362 (686)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~----~~A~~ 362 (686)
++.+++++++.+.+ +..+|+....++...|+++++++.++.+++.++. +..+|+.....+.+. |.+ ++++.
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 88899899887654 7888888888888899999999999999988655 777887777666554 222 45677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 044251 363 LFQEMKTKGLKPTSATFNILMDAYSRR----MQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR 423 (686)
Q Consensus 363 ~~~~m~~~g~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 423 (686)
...+++...+. |...|+.+..++... +...+|.+.+.+....+ ..+......|+..|+.
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 77666665443 666788777777663 33455666666655532 2245555566666653
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.56 E-value=0.00066 Score=73.87 Aligned_cols=249 Identities=9% Similarity=-0.088 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
..|...+....+..-. +..+|+.|.-. ...|.+.-|...|-+-... .+.+..+|..+...+....+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhh
Confidence 3566666666554322 55666665444 5556676666666555543 2335566777777777777777777777777
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--HH--hCCCCCCHHHHHHHHHHHHhcCCccHHHHHH---------
Q 044251 509 MSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSE--FG--KIGLQPTLMTYNMLMNAYGRGGQTSKLPQLL--------- 575 (686)
Q Consensus 509 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~--~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~--------- 575 (686)
.... +.+...|-.........|+.-++..+|.. .. ..|--++..-|-........+|+.++-+...
T Consensus 877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 6654 44555555544444566777777777765 21 1222334433333333344555544433322
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhhhhhc-----chhhh
Q 044251 576 -KEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS-GQVPDVKSYE----KLRSILDVKVATK-----NRRDK 644 (686)
Q Consensus 576 -~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~----~l~~~l~a~~~~~-----~~~~~ 644 (686)
++... +.+-+...|...+...-+.+.++.|.+...+++.. ...-|...|+ .+++++.+.+... ....|
T Consensus 956 l~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~ 1034 (1238)
T KOG1127|consen 956 LSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW 1034 (1238)
T ss_pred HHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc
Confidence 22222 22334566666666666667666666665554321 1112233332 2222222211111 11222
Q ss_pred HHHHHHHHh--cccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 645 SAILGIINS--KMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 645 ~~~~~~~~~--~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
..+...+++ -.++.++.-+++.+.|.++....-++.|.
T Consensus 1035 ~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~ 1074 (1238)
T KOG1127|consen 1035 MEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDK 1074 (1238)
T ss_pred hhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccch
Confidence 222222211 01234566677777777777766665553
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=4.5e-05 Score=70.52 Aligned_cols=249 Identities=13% Similarity=0.043 Sum_probs=156.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHH
Q 044251 351 YCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDM 430 (686)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 430 (686)
+.-.|.+..++..-....... -+...-..+.++|...|.+.....- .... -.|....+..+-......++..+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHHH
Confidence 334566666665544433221 2333334455666666665433221 1111 133333333333333333333334
Q ss_pred HHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 431 AADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 431 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
...+.+.+.......+......-...|+..|++++|++.+.... +......=+..+.+..+.+-|.+.++.|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555555444444444445567889999999998887621 334444445566788889999999999986
Q ss_pred cCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 511 EKVEGTRVTFNILLDGFAK----QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 511 ~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
.. +..+.+.|..++.+ .+.+.+|+-+|++|.+.- .|+..+.+.+..++...|++++|..++++++... .-+
T Consensus 166 id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~d 240 (299)
T KOG3081|consen 166 ID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKD 240 (299)
T ss_pred cc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCC
Confidence 43 55677777777664 457889999999997643 7899999999999999999999999999999864 336
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHC
Q 044251 587 SVTYSTMIYAFVRVRDFKR-AFFYHKQMVKS 616 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 616 (686)
+.++..++-.-...|...+ ..+.+.++...
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 8888777776666666544 34555555543
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=4.9e-05 Score=83.69 Aligned_cols=131 Identities=12% Similarity=0.101 Sum_probs=66.4
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI-ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILL 524 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 524 (686)
+...+..|.....+.|++++|+.+++...+ +.|+. .....++..+.+.+++++|+...+..+... +.+....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 344555555555555555555555555554 23332 344444455555555555555555555443 44444555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 525 DGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.++...|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555422 22345555555555555555555555555544
No 114
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.0017 Score=70.83 Aligned_cols=357 Identities=14% Similarity=0.169 Sum_probs=242.0
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 044251 194 EPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQS--KEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHV 271 (686)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 271 (686)
-|...+|+.....+.++...+-+.+.+++++++.-. .+..+...-|.||....+.. .....+..+++.... .|+..
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyD-a~~ia 1055 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYD-APDIA 1055 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCC-chhHH
Confidence 455667788888888888888888888888876532 12235556666666666553 446667777776553 23322
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 272 TCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAY 351 (686)
Q Consensus 272 ~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 351 (686)
..+...+- +++|..+|.+.- .+......|+. .-+.++.|.+.-+... ...+|..+..+-
T Consensus 1056 ------~iai~~~L-yEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQ 1114 (1666)
T KOG0985|consen 1056 ------EIAIENQL-YEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQ 1114 (1666)
T ss_pred ------HHHhhhhH-HHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHH
Confidence 22333343 788888887653 34445555554 3456666666554432 567899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 044251 352 CKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMA 431 (686)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A 431 (686)
.+.|.+.+|++-|-+.. |...|.-+++++.+.|.+++..+++....+..-+|... +.|+-+|++.++..+ .
T Consensus 1115 L~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~e-l 1185 (1666)
T KOG0985|consen 1115 LQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTE-L 1185 (1666)
T ss_pred HhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHH-H
Confidence 99999999988774322 66789999999999999999999998887776666544 568888998877632 2
Q ss_pred HHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 432 ADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
.+. . .-|+......+..-|...|.++.|.-+|... ..|..+...+...|+++.|...-++.
T Consensus 1186 E~f----i---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1186 EEF----I---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred HHH----h---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 221 1 2367777888888899999999988877644 34788888889999999888765543
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHH
Q 044251 512 KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTY 590 (686)
Q Consensus 512 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~ 590 (686)
.+..+|-.+-.+|...+.+.-|. |--+.+-....-..-|+..|-..|-+++.+.+++..+ |+.. -..+|
T Consensus 1247 ---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmf 1316 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMF 1316 (1666)
T ss_pred ---cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHH
Confidence 46778988888888776655442 2233334456667788999999999999988888765 4432 23345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~ 612 (686)
+-|.-.|.+ -++++-++.++-
T Consensus 1317 TELaiLYsk-ykp~km~EHl~L 1337 (1666)
T KOG0985|consen 1317 TELAILYSK-YKPEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHHHh-cCHHHHHHHHHH
Confidence 555544443 344444444443
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=3.3e-05 Score=71.76 Aligned_cols=158 Identities=11% Similarity=0.157 Sum_probs=119.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 044251 454 IHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQY 533 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 533 (686)
+..|...|+++.+..-.+.+.. |. ..+...++.+++...++..++.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567788887776443322211 11 01223566778888888888776 77889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--ccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAY-GRGGQ--TSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFY 609 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~ 609 (686)
++|...|++..... +.+...+..+..++ ...|+ .++|.+++++..+. .| +..++..+...+...|++++|+..
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998877 44888888888874 67777 58999999999975 44 678889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHH
Q 044251 610 HKQMVKSGQVPDVKSYEKL 628 (686)
Q Consensus 610 ~~~m~~~g~~p~~~~~~~l 628 (686)
|+++++.. .|+..-+..+
T Consensus 167 ~~~aL~l~-~~~~~r~~~i 184 (198)
T PRK10370 167 WQKVLDLN-SPRVNRTQLV 184 (198)
T ss_pred HHHHHhhC-CCCccHHHHH
Confidence 99998864 3555544443
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=3.3e-05 Score=81.06 Aligned_cols=230 Identities=13% Similarity=0.019 Sum_probs=177.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHh
Q 044251 380 NILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSV 459 (686)
Q Consensus 380 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 459 (686)
..+...+...|-...|..+++++. .+.-++.+|...|.. ++|..+..+..+. +||...|..+.+....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~-~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQH-GKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhccc-chHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 456667778888888888888764 345567777777765 7788887777663 6788999999988888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 460 GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDV 539 (686)
Q Consensus 460 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 539 (686)
.--+++|+++.+..... .-..+.......+++.++.+.|+.-.+.+ +....+|-.+..+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 88889999998776443 11112222234789999999999988876 66778888888888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-
Q 044251 540 VSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQ- 618 (686)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 618 (686)
|....... +-+...||.+-.+|.+.|+-.+|...+.++.+.+ .-+..+|...+-...+.|.+++|++.+.++.....
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 99988765 4478899999999999999999999999999887 44666777777788999999999999999875421
Q ss_pred CCCHHHHHHHHHH
Q 044251 619 VPDVKSYEKLRSI 631 (686)
Q Consensus 619 ~p~~~~~~~l~~~ 631 (686)
.-|..+...++..
T Consensus 620 ~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 620 YKDDEVLLIIVRT 632 (777)
T ss_pred cccchhhHHHHHH
Confidence 1244444444433
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=2.1e-05 Score=72.84 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=132.2
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 044251 451 TALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ 530 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 530 (686)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55667777888888888877776543 34466677778888899999999999999998776 88999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 531 GQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYH 610 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 610 (686)
|+++.|..-|.+..+.. .-++..+|.|...|.-.|+.+.|..++......+ .-|..+-..+..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999988876 3478889999999999999999999999998753 337778888888889999999999886
Q ss_pred HHH
Q 044251 611 KQM 613 (686)
Q Consensus 611 ~~m 613 (686)
.+-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 654
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00018 Score=66.66 Aligned_cols=255 Identities=13% Similarity=0.049 Sum_probs=169.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC 248 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (686)
.-++.+...|.|..++..-+...... .....-..+.++|...|++...+. .+.... .+.......+...+..-
T Consensus 13 F~iRn~fY~Gnyq~~ine~~~~~~~~---~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 13 FNIRNYFYLGNYQQCINEAEKFSSSK---TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELE 85 (299)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcccc---chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCc
Confidence 44777888899999888777665443 233556667788888887655443 333322 24445555555544445
Q ss_pred CCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 249 GRYDDAW-KAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALI 327 (686)
Q Consensus 249 g~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (686)
++.+.-+ ++.+.+......-+......-...|...+. +++|++...... +......=+..+.+..+++.|.+
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~-~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGD-FDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCC-hHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 344445444323332222233345666666 999998887621 33444444566778889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 328 IQMEMEKKGIPSNAIVYNTLINAYCK----SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 328 ~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
.++.|.+.. +..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+.+..++...|++++|..+++..+
T Consensus 159 ~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 159 ELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 999998763 56677777777665 46789999999999875 56788899999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC
Q 044251 404 DMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG 442 (686)
Q Consensus 404 ~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~ 442 (686)
..... ++.+...++..-...|...+...+...++....
T Consensus 235 ~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 235 DKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred hccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 77533 566666666555555555455566666666554
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=2.9e-05 Score=75.11 Aligned_cols=168 Identities=11% Similarity=-0.014 Sum_probs=98.8
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI---ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTR--VTFN 521 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 521 (686)
...+..++..+...|++++|...|+++.... +.+. ..+..+..++...|+++.|...++.+++....... .++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3344445555555666666666666555431 1111 24444555555666666666666666554321111 1233
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcCCccHHHHHHH
Q 044251 522 ILLDGFAKQ--------GQYLEARDVVSEFGKIGLQPTLMTY-----------------NMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 522 ~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~A~~l~~ 576 (686)
.+..++... |+.++|.+.++++.+.... +...+ ..+...|.+.|++.+|+..++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 333333332 4556666666665543211 21111 245667889999999999999
Q ss_pred HHHHCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 577 EMATLNI-KP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 577 ~m~~~g~-~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+..+..- .| ....+..++.++...|++++|..+++.+...
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9986521 12 3578889999999999999999999988764
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.5e-07 Score=57.87 Aligned_cols=32 Identities=47% Similarity=0.903 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 336 GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 336 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (686)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=2.4e-05 Score=75.66 Aligned_cols=101 Identities=9% Similarity=0.018 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCH---HHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLV-SPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDA---HVY 238 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 238 (686)
........+..+...|++++|+..|+.+....|... ...++..++.++.+.|++++|+..++.+....+ .+. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHHH
Confidence 555666677777777777777777777777655432 234556666777777777777777776654322 111 234
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHhC
Q 044251 239 NAAISGLFWC--------GRYDDAWKAYEAMEAN 264 (686)
Q Consensus 239 ~~li~~~~~~--------g~~~~A~~~~~~m~~~ 264 (686)
..+..++.+. |++++|.+.|+.+...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 4444444443 4556666666665544
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=3.7e-05 Score=71.18 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=111.8
Q ss_pred HHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044251 204 SVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKN 283 (686)
Q Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 283 (686)
......+.-.|+-+....+...... ..+.+....+..+....+.|++.+|+..|++..... ++|...|+.+-.+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 4455556666777776666666544 233566677777888888888888888888876654 66777888888888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 284 GRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGL 363 (686)
Q Consensus 284 g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (686)
|+ +++|..-|.+.++.... ++..++.+.-.+.-.|+++.|..++......+.. |..+-..|.......|++++|.++
T Consensus 148 Gr-~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GR-FDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cC-hhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 87 78888888887776332 5566777777777777788887777777766433 566666677777777777777776
Q ss_pred HHHHH
Q 044251 364 FQEMK 368 (686)
Q Consensus 364 ~~~m~ 368 (686)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 65433
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=0.00014 Score=81.60 Aligned_cols=216 Identities=12% Similarity=0.041 Sum_probs=156.4
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccC-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 187 YEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQS-KEF---RDAHVYNAAISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (686)
|++.....|+ +.-.|..-+......++.+.|++++++.... ++. .-...|.++++.-..-|.-+...++|+++.
T Consensus 1447 ferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 4444444443 3367777777778888888888888876542 111 224577788887777887888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH
Q 044251 263 ANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIP-SNA 341 (686)
Q Consensus 263 ~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~ 341 (686)
+. .-.-..|..|...|.+.++ +++|-++|+.|.+. ..-....|..++..+.+.++-+.|..++.+..+.=.+ -..
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek-~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEK-NDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhc-chhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 75 2223457778888888887 88889999988875 2246678888888888888888888888888776221 133
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 409 (686)
....-.+..-.+.|+.+.+..+|+..+..-++ -...|+..++.-.+.|+.+.++.+|+++...++.|
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 44455566667788888888888888776443 45678888888888888888888888888877665
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=2.5e-07 Score=57.88 Aligned_cols=31 Identities=32% Similarity=0.686 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 044251 548 LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 548 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 578 (686)
+.||..+||.||.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.34 E-value=2.5e-05 Score=68.60 Aligned_cols=91 Identities=9% Similarity=-0.130 Sum_probs=45.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 602 (686)
+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+++...+ +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555554443 2244555555555555555555555555555421 1234455555555555555
Q ss_pred HHHHHHHHHHHHH
Q 044251 603 FKRAFFYHKQMVK 615 (686)
Q Consensus 603 ~~~A~~~~~~m~~ 615 (686)
+++|+..++++++
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=0.00023 Score=79.19 Aligned_cols=238 Identities=15% Similarity=0.198 Sum_probs=135.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044251 339 SNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA-TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCL 417 (686)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (686)
.+...+..|+..|...+++++|.++.+...+. .|+.. .|..++..+.+.++...+..+ . +
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 35667788888888888888888888866664 23332 344444456666665444433 2 2
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044251 418 ISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
+.......+. .....++..|...+ -+..++..+..+|-+.|+.++|..+|+++++.. +-|..+.+.+...|+.. +
T Consensus 90 l~~~~~~~~~-~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNLKW-AIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhcccccch-hHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 2222222232 33333344444432 234466677778888888888888888887764 44667777777777777 8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKE 577 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 577 (686)
+++|++++.+++.. |...+++..+..+|.++....+. +... -.++.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~----------------f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDF----------------FLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchH----------------HHHHHHH
Confidence 88888777776643 44555667777777776654311 2222 2222222
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 578 MATL-NIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILD 633 (686)
Q Consensus 578 m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 633 (686)
+... |..--..++..+...|...++|++++.+++.+++..- -|......++..+.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 2211 1111233444555566666677777777777766431 23344445555553
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=2.7e-05 Score=67.89 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=91.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 504 IWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
.++.+++.. +.+......+...+...|++++|...++.+...+ +.+...|..+..+|...|++++|..++++....+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 344555443 3345566677778888899999999998887765 4478888888888989999999999998887653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 584 KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLR 629 (686)
Q Consensus 584 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 629 (686)
+.+...+..+...+...|++++|...+++.++.. |+...+..+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 125 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYSELK 125 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHHHHH
Confidence 3357778888888899999999999999888754 6665544443
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=5.9e-05 Score=66.18 Aligned_cols=90 Identities=8% Similarity=-0.051 Sum_probs=43.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQT 568 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 568 (686)
...+...|++++|...|+.++... +.+..+|..+..++...|++++|...|++..... +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 334444444444444444444433 3344444444445555555555555555544443 22444455555555555555
Q ss_pred cHHHHHHHHHHH
Q 044251 569 SKLPQLLKEMAT 580 (686)
Q Consensus 569 ~~A~~l~~~m~~ 580 (686)
++|+..|++...
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=0.00013 Score=80.31 Aligned_cols=161 Identities=11% Similarity=0.027 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYE 259 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (686)
..+++.-.....+..+. ++.++..|+.+..+.|.+++|..+++...+.. |.+......++.++.+.+++++|+..++
T Consensus 68 ~~~~~~~~~~~~~~~~~--~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 68 PAAALPELLDYVRRYPH--TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred hHhhHHHHHHHHHhccc--cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33444433333344433 35788888888888899999998888888743 3678888888888888999999998888
Q ss_pred HHHhCCCCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 044251 260 AMEANNVRPDH-VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIP 338 (686)
Q Consensus 260 ~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 338 (686)
+.... .|+. .....+..++.+.|+ +++|.++|++++..+ +-+..++..+...+.+.|+.++|...|+...+. ..
T Consensus 145 ~~l~~--~p~~~~~~~~~a~~l~~~g~-~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~ 219 (694)
T PRK15179 145 LYFSG--GSSSAREILLEAKSWDEIGQ-SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IG 219 (694)
T ss_pred HHhhc--CCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hC
Confidence 88876 4554 455556667777887 888999999888743 335788888888888889999998888888776 22
Q ss_pred CCHHHHHHHH
Q 044251 339 SNAIVYNTLI 348 (686)
Q Consensus 339 ~~~~~~~~li 348 (686)
+....|+.++
T Consensus 220 ~~~~~~~~~~ 229 (694)
T PRK15179 220 DGARKLTRRL 229 (694)
T ss_pred cchHHHHHHH
Confidence 3445554443
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.00041 Score=77.31 Aligned_cols=152 Identities=10% Similarity=0.113 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 306 QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDA 385 (686)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 385 (686)
...+-.+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|... ++++|.+++.+....
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------- 178 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------- 178 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------
Confidence 3455566666666666666666666666664 33666666666666666 666666666555432
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc-CCCCChhhHhhhHHHHHhcCCHH
Q 044251 386 YSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV-GIKPTSHSYTALIHAYSVGGWHE 464 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 464 (686)
+...+++..+..+|..+...... +. +.-..+.+.+... |...-+.++-.+-..|-..++++
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~-d~-----------------d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~ 240 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSD-DF-----------------DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWD 240 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcc-cc-----------------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Confidence 34445666666666666554211 11 2222333333322 22223455666667788889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044251 465 KAYAAFENMLREEIKPSIETYTALLDAFR 493 (686)
Q Consensus 465 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 493 (686)
+++.+++.+++.. +-|.....-++.+|.
T Consensus 241 ~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 241 EVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 9999999999863 335567777777775
No 131
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.25 E-value=5.2e-05 Score=70.43 Aligned_cols=124 Identities=11% Similarity=0.131 Sum_probs=82.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 044251 460 GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF-AKQGQ--YLEA 536 (686)
Q Consensus 460 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 536 (686)
.++.++++..++..++. -+.+...|..+...|...|+++.|...|++..+.. +.+..++..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666654 24466677777777777777777777777777665 45666666666653 45565 4777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCH
Q 044251 537 RDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDS 587 (686)
Q Consensus 537 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 587 (686)
.+++++..+.. +-+..++..+...+.+.|++++|+..|+++.+. ..|+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~ 178 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence 77777777665 336677777777777777777777777777764 24443
No 132
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.21 E-value=0.01 Score=60.85 Aligned_cols=413 Identities=12% Similarity=0.075 Sum_probs=247.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYN 239 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 239 (686)
++.+...+..+++.+..+ -++++...++.+....|.. ++.|..-+....+.++++...++|.+-.... .+...|.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s--~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~ 90 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSS--PRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWK 90 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCC--cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHH
Confidence 455778888888888766 9999999999999876654 5999999999999999999999998876522 5677777
Q ss_pred HHHHHHHH-cCCHHHH----HHHHHHH-HhCCCCCCH-HHHHHHHHHH---------HHcCCCHHHHHHHHHHHHHCCCC
Q 044251 240 AAISGLFW-CGRYDDA----WKAYEAM-EANNVRPDH-VTCSIMITAM---------RKNGRSAKEAWEFFEKMNRKGVK 303 (686)
Q Consensus 240 ~li~~~~~-~g~~~~A----~~~~~~m-~~~g~~p~~-~~~~~ll~~~---------~~~g~~~~~a~~~~~~m~~~~~~ 303 (686)
.-+.--.+ .|+...+ .+.|+-. .+.|+.+-. ..|+-.+.-+ ..+.+ .+...++|.+++..-+.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QR-I~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQR-ITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHH-HHHHHHHHHHHhcCccc
Confidence 76664433 3333332 2333333 334544432 3454444322 23334 67778888888765322
Q ss_pred CCHHHHH------HHHH-----HHH--hcCCHHHHHHHHHHHHH--CCCCCCH---------------HHHHHHHHHHHH
Q 044251 304 LSQEVVG------ALMK-----SFC--DEGLKNEALIIQMEMEK--KGIPSNA---------------IVYNTLINAYCK 353 (686)
Q Consensus 304 ~~~~~~~------~li~-----~~~--~~g~~~~A~~~~~~~~~--~g~~~~~---------------~~~~~li~~~~~ 353 (686)
-=...|+ .-|. -+. +...+-.|.++++++.. +|+.... ..|-.+|.--..
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 1111221 1111 111 22345566666666542 2332211 124444432211
Q ss_pred cC------C--HHHHHHHHHHHH-HCCCCCCHHHHHH-----HHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHH
Q 044251 354 SN------Q--LEEAEGLFQEMK-TKGLKPTSATFNI-----LMDAYSRRMQ-------PEIVEKLLLELQDMGLEPNAK 412 (686)
Q Consensus 354 ~g------~--~~~A~~~~~~m~-~~g~~p~~~~~~~-----ll~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~ 412 (686)
++ . -....-++++.+ -.+..|+...... .-+.+...|+ .+++..+++...+.-..-+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 011222223222 2233333321110 1112223333 345566666655432233333
Q ss_pred HHHHHHHHh--cCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 044251 413 SYTCLISAY--GRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKP-SIETYTALL 489 (686)
Q Consensus 413 ~~~~ll~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll 489 (686)
+|..+...- ...+.-.+....+++++...-..--..+|...++.-.+..-+..|..+|.++.+.+..+ .+..+++++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 443333211 00111124556666666554322234567778888888888999999999999887777 566677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT--LMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~ 567 (686)
.-+| .++...|.++|+.-++.- ..+...-+..++.+...++-..|..+|++....++.++ ..+|..++.-=..-|+
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 6554 688899999999887653 55666667788888899999999999999887755554 5789999998889999
Q ss_pred ccHHHHHHHHHHH
Q 044251 568 TSKLPQLLKEMAT 580 (686)
Q Consensus 568 ~~~A~~l~~~m~~ 580 (686)
+..+.++-+++..
T Consensus 488 L~si~~lekR~~~ 500 (656)
T KOG1914|consen 488 LNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888765
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=0.00076 Score=68.13 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=91.6
Q ss_pred HHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 044251 202 ACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPD-HVTCSIMITAM 280 (686)
Q Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 280 (686)
...-....+...|++++|+..++.+.. ..+.|+..+......+.+.|+..+|.+.++.+... .|+ ...+..+..++
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~-~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA-AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 333344445566777777777776655 34466777777777777777777777777777665 455 34455555666
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
.+.|+ +++|..+++...... +-|+..|..|..+|...|+..++..-.. ..|...|+++.|
T Consensus 385 l~~g~-~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A 444 (484)
T COG4783 385 LKGGK-PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQA 444 (484)
T ss_pred HhcCC-hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHH
Confidence 66666 677777777766654 3366677777777777776655544332 234456677777
Q ss_pred HHHHHHHHHC
Q 044251 361 EGLFQEMKTK 370 (686)
Q Consensus 361 ~~~~~~m~~~ 370 (686)
...+....+.
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 7666666554
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.001 Score=61.32 Aligned_cols=187 Identities=15% Similarity=0.088 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHH
Q 044251 355 NQLEEAEGLFQEMKTK---G-LKPTSA-TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSD 429 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~---g-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 429 (686)
.+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++.+.- |+..-...+=.+.....+..+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4556666666665432 2 333433 23334444445566666666666655431 221111111111111111124
Q ss_pred HHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 430 MAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 430 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
+|.++|+.+.+.++. |..+|-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 455555555444322 3344443333444444444444444444443 44455555555555555555555555555554
Q ss_pred hcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 044251 510 SEKVEGTRVTFNILLDGFAKQG---QYLEARDVVSEFGKI 546 (686)
Q Consensus 510 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~ 546 (686)
-.. |.+...+..+.+.+.-.| ++..|.++|.+.++.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 333 333333333333332222 334444444444443
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.0016 Score=65.96 Aligned_cols=239 Identities=15% Similarity=0.095 Sum_probs=136.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHH
Q 044251 278 TAMRKNGRSAKEAWEFFEKMN---RKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK--GIPSNAIVYNTLINAYC 352 (686)
Q Consensus 278 ~~~~~~g~~~~~a~~~~~~m~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~ 352 (686)
..+.+.|.+.....++|+++. ..+-.|.....+.=+ -..++.++....+.+... .-.|+...+...+.+..
T Consensus 210 ~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPl----p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~ 285 (484)
T COG4783 210 TTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPL----PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKY 285 (484)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCC----chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHh
Confidence 344556665666667777766 333333322111100 012233333333333222 12345555555555544
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhcCCCChHHHH
Q 044251 353 KSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYT-CLISAYGRPRKMSDMA 431 (686)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~~A 431 (686)
....-..+-.++.+..+. .-...-|. ....+...|++++|+..++.+... .|+...|. .....+...++. .+|
T Consensus 286 ~~~~~~~~~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~-~~A 359 (484)
T COG4783 286 EALPNQQAADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKA-KEA 359 (484)
T ss_pred ccccccchHHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCh-HHH
Confidence 433333333333222221 11222333 333445678888888888887765 45444444 444455666555 678
Q ss_pred HHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 432 ADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
.+.++.+....+. .....-.+..+|.+.|++.+|+.+++..... .+.|+..|..|.++|...|+..++..-..+
T Consensus 360 ~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---- 433 (484)
T COG4783 360 IERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE---- 433 (484)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH----
Confidence 8888888776433 2556666777888888888888888887765 556778888888888888887766654433
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 512 KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 512 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
.|...|+++.|...+....+.
T Consensus 434 --------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 434 --------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------------HHHhCCCHHHHHHHHHHHHHh
Confidence 345567888888877777654
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0014 Score=60.43 Aligned_cols=122 Identities=18% Similarity=0.108 Sum_probs=51.8
Q ss_pred HHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHH
Q 044251 209 VLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAK 288 (686)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 288 (686)
+....|+.+.|...++.+... ++.+..+-..-...+-..|++++|.++|+.+.+.+ +.|.+++-.-+......|+ --
T Consensus 61 AAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK-~l 137 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK-NL 137 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC-cH
Confidence 334445555555555444431 22222222222223333445555555555554443 3344444444444444444 23
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 289 EAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEK 334 (686)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (686)
+|++-+...++. +..|...|.-+...|...|+++.|.-.++++.-
T Consensus 138 ~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 138 EAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 444444443332 223444444444444444444444444444443
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.10 E-value=0.00015 Score=63.13 Aligned_cols=103 Identities=14% Similarity=0.056 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
.....+...+...|+++.|...++.+...+ +.+...+..+...+.+.|++++|..+++...+.+ +.+...+..+..+|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 445555666677777777777777776655 4566777777777777777777777777776665 44666777777777
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHHH
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSVT 589 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~~ 589 (686)
...|++++|...|++..+. .|+...
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccch
Confidence 7778888888877777753 454433
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00037 Score=61.41 Aligned_cols=117 Identities=13% Similarity=0.094 Sum_probs=75.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCc
Q 044251 494 RSGDTGMMMKIWKLMMSEKVEGT---RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT--LMTYNMLMNAYGRGGQT 568 (686)
Q Consensus 494 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 568 (686)
..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++ ....-.|...+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3667777777777777654 223 22333455667777888888888888776542222 22344466777788888
Q ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 569 SKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQM 613 (686)
Q Consensus 569 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 613 (686)
++|+..++..... ......+...+.++.+.|++++|+..|+++
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8888888664322 224556667777888888888888888764
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00055 Score=69.86 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKS 315 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 315 (686)
.....|+..+...++++.|.++|+++.+. .|++. ..++..+...++ ..+|.+++.+.++.. +-+...+..-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~--~~LA~v~l~~~~-E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVA--VLLARVYLLMNE-EVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHH--HHHHHHHHhcCc-HHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 45556667777788899999999998876 46543 346666666666 778888888888653 2356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 316 FCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
|.+.++++.|+.+.+++... .|.+..+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 244 Ll~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888888888876 344666888888888888888888888877653
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=2.3e-05 Score=49.67 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 554 TYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 554 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.85 E-value=0.00047 Score=70.34 Aligned_cols=124 Identities=12% Similarity=0.162 Sum_probs=84.1
Q ss_pred HhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 044251 450 YTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK 529 (686)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 529 (686)
...|+..+...++++.|+.+|+++.+.. |+. ...++..+...++..+|.+++++.+... +.+...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555666677777777777777642 443 3346666666677777777777777554 4566666666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 530 QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
.++++.|..+.+++.... +-+..+|..|..+|.+.|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777654 3356677777777777777777777776553
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.77 E-value=5e-05 Score=48.03 Aligned_cols=33 Identities=48% Similarity=0.902 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044251 343 VYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT 375 (686)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 375 (686)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777765
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.76 E-value=4.3e-05 Score=48.00 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRP 268 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 268 (686)
.+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.74 E-value=4.7e-05 Score=47.85 Aligned_cols=32 Identities=38% Similarity=0.621 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC
Q 044251 554 TYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP 585 (686)
Q Consensus 554 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 585 (686)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555444444
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.72 E-value=0.12 Score=56.61 Aligned_cols=198 Identities=15% Similarity=0.027 Sum_probs=133.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
+-.+.+.|+.++|+.+++......+. +..+...+-.+|.+.|+.++|..+|++.... .|+......+..+|++.+.
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHH
Confidence 34457899999999888887766655 6688999999999999999999999998873 2667778888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcC
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNG---------RSAKEAWEFFEKMNRKG-VKLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g 320 (686)
+.+-.++--+|-+. .+-+...+=.++..+...- .....|.+.++.+++.+ ..-+..-.......+...|
T Consensus 126 yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~ 204 (932)
T KOG2053|consen 126 YKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQG 204 (932)
T ss_pred HHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc
Confidence 76544433333221 1222333334444433221 11446777788777665 3223334444455667788
Q ss_pred CHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 044251 321 LKNEALIIQ-MEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK 373 (686)
Q Consensus 321 ~~~~A~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 373 (686)
.+++|+.++ ....+.-...+...-+.-+..+...++|.+..++-.++...|..
T Consensus 205 k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 205 KYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 899999888 44444444445666667777788888888888888888777543
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.0021 Score=56.58 Aligned_cols=126 Identities=18% Similarity=0.133 Sum_probs=81.5
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHH
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLREEIKPS---IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT--RVTFNIL 523 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 523 (686)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......+. ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777777777752 223 13333455667778888888888888887652232 2244456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 044251 524 LDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 524 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 578 (686)
...+...|++++|+..++..... ......+..++..|.+.|+.++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777888888888888664322 234556677788888888888888887764
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00068 Score=54.11 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR 599 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 599 (686)
+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|.+++++..... ..+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455666677778888888888776654 3345667777777777888888888888777643 2344567777777888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044251 600 VRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~~ 616 (686)
.|++++|...+.+..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888777653
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.68 E-value=0.0011 Score=56.11 Aligned_cols=100 Identities=11% Similarity=-0.029 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCC--CCHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSL-VSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEF--RDAHVYNAA 241 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 241 (686)
+.+...+..+.+.|++++|++.|+.+....|.. ..+..+..++.++.+.|+++.|...|+.+....+. ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 345566778888889999999998888776543 23456677888888888888888888877653211 135567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
..++.+.|++++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 78888888888888888888776
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.65 E-value=0.00083 Score=68.84 Aligned_cols=107 Identities=10% Similarity=-0.054 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
+...+..+...|++++|+++|+.++...|.. +..|..++.+|.+.|++++|+..++++..... .+...|..+..+|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~--~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~ 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN--AELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHH
Confidence 3444777888999999999999999987754 47888888899999999999999998877443 67888889999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT 278 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 278 (686)
..|++++|+..|++.... .|+......++.
T Consensus 82 ~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 82 KLEEYQTAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred HhCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 999999999999998876 566555444443
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.0014 Score=55.40 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC----HHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQ--PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD----SVTYST 592 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~ 592 (686)
++..++..+.+.|++++|...+..+...... .....+..+..++.+.|++++|..+|+++... .|+ ..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHH
Confidence 4455566666777777777777777654311 11345556777777777777777777777653 222 455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 593 MIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 593 li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
+..++.+.|++++|...++++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7777777778888888777777654
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.62 E-value=0.0007 Score=69.39 Aligned_cols=124 Identities=13% Similarity=0.129 Sum_probs=98.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044251 477 EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE--KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMT 554 (686)
Q Consensus 477 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 554 (686)
+.+.+...+..+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..+++..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45567778888888888888888888888887765 2222234556888888888989999998888888888899999
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 044251 555 YNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRV 600 (686)
Q Consensus 555 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 600 (686)
+|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888888777677777777777777766
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.62 E-value=0.004 Score=66.74 Aligned_cols=149 Identities=9% Similarity=-0.006 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Q 044251 478 IKPSIETYTALLDAFRRSG-----DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ--------GQYLEARDVVSEFG 544 (686)
Q Consensus 478 ~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~ 544 (686)
.+.+...|...+++..... +...|..+|++.++.. +.....|..+..++... +++..+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4556666776666654322 2557777777777665 44445555444433321 12344445555443
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 545 KI-GLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 545 ~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
.. ....+...|..+.-.+...|++++|...++++.+. .|+...|..++.++...|+.++|.+.++++... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 12446678888877777889999999999999975 578889999999999999999999999999875 47777
Q ss_pred HHHHHHHH
Q 044251 624 SYEKLRSI 631 (686)
Q Consensus 624 ~~~~l~~~ 631 (686)
+|-.|-++
T Consensus 488 t~~~~~~~ 495 (517)
T PRK10153 488 TLYWIENL 495 (517)
T ss_pred hHHHHHhc
Confidence 77655444
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.00087 Score=68.72 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=103.5
Q ss_pred CCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 044251 443 IKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE--EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTF 520 (686)
Q Consensus 443 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 520 (686)
...+......+++.+....+.+.+..++.+.... ....-..|..++++.|...|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3446777888888888888999999999888765 22222345679999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044251 521 NILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG 565 (686)
Q Consensus 521 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 565 (686)
|.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999988777666778887777777665
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00079 Score=63.87 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=48.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHH
Q 044251 492 FRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKL 571 (686)
Q Consensus 492 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 571 (686)
+.+.+++++|+..|.+.++.. +-|++.|..-..+|.+.|.++.|++-.+..+... +....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 344555555555555555544 3444555555555555555555555555544433 22344555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q 044251 572 PQLLKEMATLNIKPDSVTY 590 (686)
Q Consensus 572 ~~l~~~m~~~g~~pd~~~~ 590 (686)
++.|++.++ +.|+-.+|
T Consensus 169 ~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHhhhc--cCCCcHHH
Confidence 555555553 34544333
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.59 E-value=0.0017 Score=66.53 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=49.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFK 604 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~ 604 (686)
.+...|++++|+..|++++... +-+...|..+..+|.+.|++++|+..+++++.. .| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 3444556666666666655544 234555555556666666666666666666543 33 3455555555666666666
Q ss_pred HHHHHHHHHHHC
Q 044251 605 RAFFYHKQMVKS 616 (686)
Q Consensus 605 ~A~~~~~~m~~~ 616 (686)
+|+..++++++.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 666666665553
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.59 E-value=0.00092 Score=57.88 Aligned_cols=99 Identities=10% Similarity=-0.022 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+.+....+...+...|++++|.++|+.+...+|... ..|-.++.++-..|++++|+..|.......+ .++..+..+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 456677888899999999999999999998877554 8888888899999999999999998777554 7888899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
.++...|+.+.|.+.|+.....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999887664
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.59 E-value=0.0019 Score=55.91 Aligned_cols=98 Identities=7% Similarity=-0.072 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYA 596 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~ 596 (686)
....-.+...+...|++++|..+|+.+.... +-+..-|-.|..+|-..|++++|+..+..+...+ +-|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344555666778899999999999887766 3477788889999999999999999999988764 2368888899999
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 044251 597 FVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~~ 616 (686)
+...|+.+.|++.|+.++..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988865
No 158
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.045 Score=54.46 Aligned_cols=307 Identities=14% Similarity=0.050 Sum_probs=153.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 044251 314 KSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT-SATFNILMDAYSRRMQP 392 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~ 392 (686)
..+.+...+.+|+..+...++.++. ++.-|..-+..+...|++++|.--.+.-... +|. .....-..+++...++.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 3455666777777777777777443 5666666666777777777776655444332 111 11222233333333444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC-CCChhhHhhh-HHHHHhcCCHHHHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI-KPTSHSYTAL-IHAYSVGGWHEKAYAAF 470 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~ 470 (686)
.+|.+.++.-. .| . ...++..++.+..... .|.-..|..+ ..++...|+.++|..+-
T Consensus 134 i~A~~~~~~~~---------~~-~-----------~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 134 IEAEEKLKSKQ---------AY-K-----------AANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHhhhhh---------hh-H-----------HhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 44444333110 00 0 0011111111111111 1111222211 12333444444444444
Q ss_pred HHHHHcCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhcCCCCC-----------HHHHHHHHHHHHHcCCHHHHH
Q 044251 471 ENMLREEIKPSIETYTALLD--AFRRSGDTGMMMKIWKLMMSEKVEGT-----------RVTFNILLDGFAKQGQYLEAR 537 (686)
Q Consensus 471 ~~m~~~~~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~ 537 (686)
-..++.. + ...+..+++ ++-..++.+.+...|++.+..+..-. ...+..=.+-..+.|++..|.
T Consensus 193 ~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 193 IDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 4433321 0 111111111 12233444444444444443321100 001111123456789999999
Q ss_pred HHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 538 DVVSEFGKIG---LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQM 613 (686)
Q Consensus 538 ~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m 613 (686)
+.|.+.+... ..++...|.....+..+.|+.++|+.--++.... .+. ...|..-..++...++|++|.+-++++
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987543 3456777877888888999999999988888742 222 223333344666789999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHH
Q 044251 614 VKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIIN 652 (686)
Q Consensus 614 ~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~ 652 (686)
.+... +...-..++++-.+ .....+++|-.++++..
T Consensus 348 ~q~~~--s~e~r~~l~~A~~a-LkkSkRkd~ykilGi~~ 383 (486)
T KOG0550|consen 348 MQLEK--DCEIRRTLREAQLA-LKKSKRKDWYKILGISR 383 (486)
T ss_pred Hhhcc--ccchHHHHHHHHHH-HHHhhhhhHHHHhhhhh
Confidence 87643 33333334443321 12333566766666553
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00017 Score=56.71 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=60.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 177 DGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWK 256 (686)
Q Consensus 177 ~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (686)
+|+++.|+.+|+.+....|...+...+..++.++.+.|++++|+.++++ ...+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 6788999999999998877422445566678889999999999999987 22121 344555566888889999999998
Q ss_pred HHHH
Q 044251 257 AYEA 260 (686)
Q Consensus 257 ~~~~ 260 (686)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.52 E-value=0.0015 Score=51.98 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=47.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044251 488 LLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 488 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 567 (686)
+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444444555555555555554443 2233444555555555566666666666555443 2233455555566666666
Q ss_pred ccHHHHHHHHHH
Q 044251 568 TSKLPQLLKEMA 579 (686)
Q Consensus 568 ~~~A~~l~~~m~ 579 (686)
+++|...+.+..
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 161
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.47 E-value=0.025 Score=54.43 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=31.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 347 LINAYCKSNQLEEAEGLFQEMKTK--GLKPTSATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
+...|.+.|.+..|..-|+.+.+. +..........++.+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444566666666666666666654 22223334555666666666666666655544
No 162
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.43 E-value=0.0024 Score=51.26 Aligned_cols=74 Identities=20% Similarity=0.388 Sum_probs=34.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 313 MKSFCDEGLKNEALIIQMEMEKKGI-PSNAIVYNTLINAYCKSN--------QLEEAEGLFQEMKTKGLKPTSATFNILM 383 (686)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~ll 383 (686)
|..|...+++.....+|+.++..|+ -|++.+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555554 445555555554444321 1223344455555555555555555544
Q ss_pred HHH
Q 044251 384 DAY 386 (686)
Q Consensus 384 ~~~ 386 (686)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
No 163
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.42 E-value=0.0041 Score=49.94 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHCCCCCCHHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEANNV-RPDHVTCSIMITAMRKNGRS-------AKEAWEFFEKMNRKGVKLSQEV 308 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~-------~~~a~~~~~~m~~~~~~~~~~~ 308 (686)
+....|.-+...+++.....+|+.+++.|+ -|+..+|+.++.+.++..-+ .-..+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566667777899999999999999888 88999999999888766431 2234445555555555555555
Q ss_pred HHHHHHHH
Q 044251 309 VGALMKSF 316 (686)
Q Consensus 309 ~~~li~~~ 316 (686)
|+.++..+
T Consensus 107 Ynivl~~L 114 (120)
T PF08579_consen 107 YNIVLGSL 114 (120)
T ss_pred HHHHHHHH
Confidence 55554443
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.23 Score=52.77 Aligned_cols=170 Identities=15% Similarity=0.132 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 198 VSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHV------------YNAAISGLFWCGRYDDAWKAYEAMEANN 265 (686)
Q Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g 265 (686)
+.|+.|..++......-.++.|...|-+.... +.+.. -.+=|.+| -|++++|.++|-+|..+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh
Confidence 45588888888777766777777777655432 22211 11222222 378888888888776542
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 044251 266 VRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS----QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA 341 (686)
Q Consensus 266 ~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 341 (686)
+ .|....+.|+ +-...++++. -|-..| ...++.+...++....+++|.+.|......
T Consensus 765 L---------Aielr~klgD-wfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------ 825 (1189)
T KOG2041|consen 765 L---------AIELRKKLGD-WFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ 825 (1189)
T ss_pred h---------hHHHHHhhhh-HHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------
Confidence 1 2333334444 4333333321 111111 235666666666666666666666543211
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
..++.+|.+..++++.+.+-+.+.+ +....-.+..++...|.-++|.+.|
T Consensus 826 ---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 826 ---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 1244455555555554444433332 3333444555555555555555444
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.40 E-value=0.0041 Score=61.42 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSF 316 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (686)
+|..+++...+.+..+.|..+|.+.++.+ .-+...|......-...+++.+.|..+|+..++. ...+...+...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44445555555555555555555554332 1111222222222122222233455555544443 222344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 317 CDEGLKNEALIIQMEMEKKGIPSNA---IVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
.+.|+.+.|..+|+..... ++.+. ..|..++..-.+.|+++.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444433 21111 2444444444444444444444444433
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.39 E-value=0.00014 Score=44.42 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHCC
Q 044251 554 TYNMLMNAYGRGGQTSKLPQLLKEMATLN 582 (686)
Q Consensus 554 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 582 (686)
+|+.|+.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.37 E-value=0.0002 Score=43.78 Aligned_cols=29 Identities=52% Similarity=0.967 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 343 VYNTLINAYCKSNQLEEAEGLFQEMKTKG 371 (686)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (686)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.37 E-value=0.00038 Score=54.62 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=51.2
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044251 530 QGQYLEARDVVSEFGKIGLQ-PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~ 607 (686)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ .. +.+ +......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46777778877777765431 1344455577778888888888888877 22 223 2344555567778888888888
Q ss_pred HHHHH
Q 044251 608 FYHKQ 612 (686)
Q Consensus 608 ~~~~~ 612 (686)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87765
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.35 E-value=0.032 Score=53.64 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQDM--GLEPNAKSYTCLISAYGRPRKMSDMAADAFL 436 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~ 436 (686)
+...|.+.|.+..|..-++.+.+. +..........+..+|...|.. +.|..+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~-~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN-AQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh-HHHHHHHH
Confidence 344455555555555555555443 1112233344444555544333 44444433
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.34 E-value=0.018 Score=52.38 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=61.2
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS--IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILL 524 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 524 (686)
...+..+...+...|++++|...|++.......+. ...+..+..++.+.|+++.|...+.+.++.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566777777888888888888888776432222 3566777777778888888888888877654 34556666666
Q ss_pred HHHHHcCCHHHHH
Q 044251 525 DGFAKQGQYLEAR 537 (686)
Q Consensus 525 ~~~~~~g~~~~A~ 537 (686)
..|...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6776666654443
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.014 Score=55.71 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=95.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 044251 455 HAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYL 534 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 534 (686)
.-+.+.+++++|+..|.+.++. .+-|.+.|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3467889999999999999985 34467888889999999999999999999998776 556789999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCcc---HHHHHHHHHHHCCCCCCH
Q 044251 535 EARDVVSEFGKIGLQPTLMTY-NMLMNAYGRGGQTS---KLPQLLKEMATLNIKPDS 587 (686)
Q Consensus 535 ~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~ 587 (686)
+|++.|++.++.. |+-.+| ..|-.+-.+.+... .+..-++-....|..||.
T Consensus 167 ~A~~aykKaLeld--P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 167 EAIEAYKKALELD--PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHhhhccC--CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999999988764 544444 44544444444444 333333333333444653
No 172
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.32 E-value=0.0058 Score=55.60 Aligned_cols=73 Identities=19% Similarity=0.385 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 355 NQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR----------------RMQPEIVEKLLLELQDMGLEPNAKSYTCLI 418 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 418 (686)
|..+-....+..|.+-|+.-|..+|+.|++++=+ -.+-+-|++++++|...|+.||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3444444444444444444444444444444322 123355667777777777777777777777
Q ss_pred HHhcCCCCh
Q 044251 419 SAYGRPRKM 427 (686)
Q Consensus 419 ~~~~~~~~~ 427 (686)
..+++.+..
T Consensus 146 ~iFG~~s~p 154 (228)
T PF06239_consen 146 NIFGRKSHP 154 (228)
T ss_pred HHhccccHH
Confidence 777665443
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.013 Score=56.29 Aligned_cols=101 Identities=16% Similarity=0.128 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHCCCCC-CHHH
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG---QTSKLPQLLKEMATLNIKP-DSVT 589 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p-d~~~ 589 (686)
+.|...|..|...|...|+++.|...|.+..+.. .+|+..+..+..++.... ...++..+|++++.. .| |..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 7789999999999999999999999999998876 568888888888876543 356899999999975 45 6778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
...|...+...|++.+|...|+.|++..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888889999999999999999999875
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0043 Score=56.23 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 521 NILLDGFAKQGQYLEARDVVSEFGKIGLQP--TLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 521 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
..++..+...|++++|...|++.......+ ...+|..+..+|...|++++|+..+++..
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333444444444444444443322111 12234444444444444444444444444
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.27 E-value=0.011 Score=53.73 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT--RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMN 560 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 560 (686)
..+..+...+...|++++|...+++.++....+. ...+..+...+.+.|++++|...+++..... +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4456666666777777777777777775532221 3566666777777777777777777766654 224556666666
Q ss_pred HHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 561 AYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 561 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+|...|+...+..-++.+. ..+++|.++++++++.+ |+. |..++..+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~--p~~--~~~~~~~~ 161 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLA--PNN--YIEAQNWL 161 (172)
T ss_pred HHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhC--chh--HHHHHHHH
Confidence 6666666544443333222 12577778887776533 433 44444444
No 176
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.26 E-value=0.0041 Score=56.55 Aligned_cols=37 Identities=30% Similarity=0.565 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 356 QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQP 392 (686)
Q Consensus 356 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (686)
+-+-|++++++|...|+-||..++..+++++.+.+.+
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 4577999999999999999999999999999776553
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.26 E-value=0.008 Score=50.25 Aligned_cols=109 Identities=16% Similarity=-0.014 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCC---CHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLV-SPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFR---DAHVYNAAI 242 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li 242 (686)
.......+-..|+.++|+.+|+.++..+.... ..+.+..+...+...|++++|+.+|+..... .+. +......+.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHH
Confidence 44566777778888888888888887643322 2345666667777778888888888776652 212 333333445
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
.++...|+.++|++.+-.... ++...|..-|..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 566777888887777666543 3333454444444
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.0087 Score=59.11 Aligned_cols=131 Identities=17% Similarity=0.161 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 271 VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD-EGLKNEALIIQMEMEKKGIPSNAIVYNTLIN 349 (686)
Q Consensus 271 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 349 (686)
.+|..++..+.+.+. .+.|..+|.++.+.+ ..+..+|......-.. .++.+.|..+|+...+. ++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g-~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEG-IEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-hHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 468888888888877 999999999998653 2345556555555334 56777799999999887 6668899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPT---SATFNILMDAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
.+.+.|+.+.|..+|+..... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998875 3322 248999999889999999999999988775
No 179
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.22 E-value=0.31 Score=49.41 Aligned_cols=440 Identities=11% Similarity=0.093 Sum_probs=208.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC---CCCCHHHH-HHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEP---SLVSPRAC-SVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~---~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
...|-+++++.+|.++|-++-+... .....+.+ ..++.+|.- ++.+.-...+..+.+. .+......-.....+.
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~-~~~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ-FGKSAYLPLFKALVAY 90 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh-cCCchHHHHHHHHHHH
Confidence 4456678899999999998876632 22222222 334445443 3444443333333331 1123333223334456
Q ss_pred HcCCHHHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCHHH
Q 044251 247 WCGRYDDAWKAYEAMEAN--NVRP------------DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK----GVKLSQEV 308 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~----~~~~~~~~ 308 (686)
+.+.+++|++.+..-.+. +-.| |-.--+..+..+...|+ +.++..+++++... ....+..+
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~-f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR-FSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhhhhhcccHHH
Confidence 788889888887776554 2121 22223455667778888 88888888887654 34478888
Q ss_pred HHHHHHHHHhcCCH---------------HHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 044251 309 VGALMKSFCDEGLK---------------NEALIIQMEMEKK------GIPSNAIVYNTLINAYCKS--NQLEEAEGLFQ 365 (686)
Q Consensus 309 ~~~li~~~~~~g~~---------------~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~ 365 (686)
|+.++-.+.+.=-+ +.+.-...+|... .+-|.......++....-. .+..--+++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88766555542111 1111111111110 0111111111111111110 11111122222
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044251 366 EMKTKGLKPTSA-TFNILMDAYSRRMQPEIVEKLLLELQDMGLEP----NAKSYTCLISAYGRPRKMSDMAADAFLRMKR 440 (686)
Q Consensus 366 ~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~ 440 (686)
.....-+.|+.. ....|...+.. +.+++..+-+.+....+.+ -..+|..++....+.+.. ..|...+.-+..
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T-~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT-EEAKQYLALLKI 326 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHh
Confidence 222222333322 12222222222 3444444333332221111 133455555555555444 445555555544
Q ss_pred cCCCCCh-----hhHhhhHHHHHh----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH---HHHHHcCC-HHHHHHHHH
Q 044251 441 VGIKPTS-----HSYTALIHAYSV----GGWHEKAYAAFENMLREEIKPSI-ETYTALL---DAFRRSGD-TGMMMKIWK 506 (686)
Q Consensus 441 ~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll---~~~~~~g~-~~~a~~~~~ 506 (686)
..+.... .+-..+.+..+. .-+...-+.+|+...... .|. .....++ .-+-+.|. -++|..+++
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3222110 000111122221 111233344444444432 222 1222222 22333444 677888888
Q ss_pred HHHhcCCCCCHHHHHHHHH----HHHH---cCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCccHHHH
Q 044251 507 LMMSEKVEGTRVTFNILLD----GFAK---QGQYLEARDVVSEFGKIGLQP----TLMTYNMLMNA--YGRGGQTSKLPQ 573 (686)
Q Consensus 507 ~~~~~~~~~~~~~~~~li~----~~~~---~g~~~~A~~~~~~~~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~~ 573 (686)
.+++-. +-|...-|.+.. .|.. ...+.+-..+-+-+.+.|+.| +...-|.|..+ +...|++.++.-
T Consensus 405 ~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 405 LILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 877653 334444443322 2221 223333444444445667665 34445555544 346788888876
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044251 574 LLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYE 626 (686)
Q Consensus 574 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 626 (686)
.-..+.+ +.|++.+|..++-++....++++|+.++.. +.|+..+++
T Consensus 484 ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~d 529 (549)
T PF07079_consen 484 YSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRD 529 (549)
T ss_pred HHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHH
Confidence 6555553 688888888888888888889999888875 356666654
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.21 E-value=0.098 Score=46.22 Aligned_cols=136 Identities=9% Similarity=0.060 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHH
Q 044251 478 IKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-PTLMTYN 556 (686)
Q Consensus 478 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~ 556 (686)
..|+...-..|..++...|+..+|...|.+...--...|..++-.+..+....+++..|...++++.+.... -++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 467777777888888888888888888888886656677888888888888888888888888887654310 1233344
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 557 MLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
.+...|...|+..+|..-|+.+... -|+...-.....-+.+.|+.++|..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5678888888888888888888864 67766555555666778877777666555543
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.18 E-value=0.011 Score=53.53 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=34.0
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKP--SIETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
..|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+..++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555556666666666666665432111 1234555555555556666666555555544
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.18 E-value=0.013 Score=57.84 Aligned_cols=114 Identities=13% Similarity=-0.008 Sum_probs=72.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHh------cccCCCCCCHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVS--PRACSVLFPVLGRARMGDDLMVLFKN------LPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~~~~~~~~~~li 242 (686)
...||+.|+...-+.+|+.+++.+....+ ...|..+..+|.-.+++++|++.... ...... ........|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl-GEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL-GEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh-cccccccccc
Confidence 67899999999999999999998654332 35666777777788889999876532 111111 2334455677
Q ss_pred HHHHHcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHHcCC
Q 044251 243 SGLFWCGRYDDAWKAYEAM----EANNVR-PDHVTCSIMITAMRKNGR 285 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m----~~~g~~-p~~~~~~~ll~~~~~~g~ 285 (686)
+.+--.|.+++|+-...+- ++.|-. ....++..+...|...|+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 7777788898887544332 222211 123455556666665554
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.24 Score=52.59 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
|.+..|..+.......-.++-|...|-+...
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 5566777777666666666666666655543
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.15 E-value=0.054 Score=47.77 Aligned_cols=117 Identities=14% Similarity=0.019 Sum_probs=94.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC---CHHH
Q 044251 513 VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP---DSVT 589 (686)
Q Consensus 513 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~~ 589 (686)
..|+..---.|..++...|+..+|...|++...--+..|....-.+..+....+++.+|..+++.+.+.. | .+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 3567777778889999999999999999998765556688899999999999999999999999998753 3 2445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILD 633 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 633 (686)
...+.+++...|.+..|...|+.++.. -|+...-......|.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La 204 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLA 204 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 667788999999999999999999874 477655444455553
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.02 E-value=0.033 Score=59.83 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 044251 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK 300 (686)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 300 (686)
+..+|.++...+...|++++|...|++.... .|+...|..+...+...|+ .++|.+.+++..+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~-~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGD-NRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Confidence 3344555544444555555555555555544 2444555555555555555 55555555555543
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.29 Score=45.84 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~ 299 (686)
+.+.++..+...|.+.-...++.+..++.-+.++.....|.+.--+.|+ .+.|...|++..+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD-~k~a~~yf~~vek 240 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD-IKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc-HHHHHHHHHHHHH
Confidence 3444444455555555555555555544323334444444444444444 4445555544433
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.005 Score=60.68 Aligned_cols=286 Identities=14% Similarity=0.103 Sum_probs=141.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH--HHHC--CCCC-CHHHHHHHHH
Q 044251 314 KSFCDEGLKNEALIIQMEMEKKGIPSNA----IVYNTLINAYCKSNQLEEAEGLFQE--MKTK--GLKP-TSATFNILMD 384 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~--m~~~--g~~p-~~~~~~~ll~ 384 (686)
.-+|+.|+......+|+..++.|.. |. .+|..|..+|.-.+++++|+++-.. .+.. |-+. ..-....|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578888888888888888888754 33 3456666677777788888776432 1111 1110 1112223444
Q ss_pred HHHhcCCHHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHh
Q 044251 385 AYSRRMQPEIVEKLLLEL----QDMGLE-PNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSV 459 (686)
Q Consensus 385 ~~~~~~~~~~a~~~~~~m----~~~~~~-p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 459 (686)
.+--.|.+++|.-.-.+- .+.|-. .....+-.+-..|...|+-.. . ..-.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g--~---~~pee~g~f~~ev~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG--L---EAPEEKGAFNAEVT---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC--C---CChhhcccccHHHH----------
Confidence 444555666554332221 111110 011222222233322111000 0 00000000000000
Q ss_pred cCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHH
Q 044251 460 GGWHEKAYAAFENMLR----EEIK-PSIETYTALLDAFRRSGDTGMMMKIWKLMMSE----KV-EGTRVTFNILLDGFAK 529 (686)
Q Consensus 460 ~g~~~~A~~~~~~m~~----~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~ 529 (686)
..++.|.++|.+-++ .|-. .--..|..|.+.|.-.|+++.|+..++.-++. |- ..-...+..|..++.-
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 011233333332111 1100 01133455555555667777777666554332 21 1123456667777777
Q ss_pred cCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHH
Q 044251 530 QGQYLEARDVVSEFG----KIGLQ-PTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT----L-NIKPDSVTYSTMIYAFVR 599 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~-g~~pd~~~~~~li~~~~~ 599 (686)
.|+++.|.+.|+... +.|-+ ....+.-+|...|.-..++++|+.++.+-+. . ...-....+.+|..++..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 788888887777643 33311 1233344567777777777888777665432 1 112245678888888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044251 600 VRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~~ 616 (686)
.|..++|+.+.+..++.
T Consensus 328 lg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 88888888877766544
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.96 E-value=0.044 Score=54.37 Aligned_cols=27 Identities=7% Similarity=-0.214 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMR 191 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~ 191 (686)
+.+......+-..|++++|...|..+.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 344455555556666666666665554
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.94 E-value=0.0019 Score=48.16 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=31.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhccc
Q 044251 175 ANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQ 228 (686)
Q Consensus 175 ~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (686)
...|++++|+++|+.+....|. +..++..++.+|.+.|++++|..+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666666666666554 335555666666666666666666666555
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.93 E-value=0.53 Score=47.17 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=71.0
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
+.+..|.-+...|+...|..+-.+. -.|+...|...+.+++..++|++..++-.. . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 3444556666777777777665554 236777778888888888888776665332 1 12355777777777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKE 577 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 577 (686)
+.|+..+|..++.++ + +..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 778877777777751 2 24456677777777777765444
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.92 E-value=0.029 Score=54.43 Aligned_cols=106 Identities=12% Similarity=0.033 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC----HHHHH
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT--LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD----SVTYS 591 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~ 591 (686)
..|+..+..+.+.|++++|...|+.+++..+... ...+-.++.+|...|++++|...|+.+... .|+ ...+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHH
Confidence 3455555555666888888888888876542211 346667888888888888888888888753 332 45556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 592 TMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEK 627 (686)
Q Consensus 592 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 627 (686)
.++..+...|++++|..+++++++.- |+......
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~y--P~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKY--PGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHH
Confidence 66777778899999999998888754 66554433
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.92 E-value=0.054 Score=45.33 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=45.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHH
Q 044251 454 IHAYSVGGWHEKAYAAFENMLREEIKPS--IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE--GTRVTFNILLDGFAK 529 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~ 529 (686)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++........ .+..+...+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3455556666666666666666554433 134444555555666666666666665544211 012222222334455
Q ss_pred cCCHHHHHHHHHHH
Q 044251 530 QGQYLEARDVVSEF 543 (686)
Q Consensus 530 ~g~~~~A~~~~~~~ 543 (686)
.|+.++|...+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 56666665555443
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.92 E-value=0.0029 Score=47.17 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=54.7
Q ss_pred HccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 211 GRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT 278 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 278 (686)
.+.|++++|+.+|+.+.... +.+..++..++.+|.+.|++++|.++++.+... .|+...|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHHh
Confidence 46799999999999998743 368999999999999999999999999999887 688666766654
No 194
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.89 E-value=0.031 Score=55.45 Aligned_cols=159 Identities=14% Similarity=0.203 Sum_probs=93.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHH
Q 044251 455 HAYSVGGWHEKAYAAFENMLRE----EIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSE----KVEGT--RVTFNIL 523 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l 523 (686)
..|-..|++++|...|.+.... +-.. -...|.....+|.+. +++.|...+++..+. | .++ ..++..+
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~l 120 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHH
Confidence 3455556666666555554321 1000 112333333333333 666666666665543 2 222 3356667
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCC-----CCH-HHH
Q 044251 524 LDGFAKQ-GQYLEARDVVSEFGKI----GLQPT--LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIK-----PDS-VTY 590 (686)
Q Consensus 524 i~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~-~~~ 590 (686)
...|... |++++|.+.|++..+. + .+. ..++..+...+.+.|++++|.++|++....-+. .+. ..+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 7778777 8999999999987643 2 111 345677888899999999999999998764322 122 223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
...+-++...||+..|...+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444667789999999999998754
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.86 E-value=0.096 Score=49.02 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHhccc
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSL-VSPRACSVLFPVLGRARMGDDLMVLFKNLPQ 228 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (686)
+.+.+...+..+...|++.+|+..|+.+....|.. ..+.+...++.++.+.|+++.|+..++.+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55667777888888899999999999888876543 3445556666667777777777776666554
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.86 E-value=0.0043 Score=46.40 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 044251 551 TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVR-DFKRAFFYHKQMVK 615 (686)
Q Consensus 551 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 615 (686)
++.+|..+...+...|++++|+..|++..+. .| +...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3556666677777777777777777777654 34 4566666666777777 57777777776665
No 197
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.95 Score=48.92 Aligned_cols=336 Identities=15% Similarity=0.166 Sum_probs=180.8
Q ss_pred CCCCCCHHHHHH-----HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHH-HHHHHHHC
Q 044251 264 NNVRPDHVTCSI-----MITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK--NEALI-IQMEMEKK 335 (686)
Q Consensus 264 ~g~~p~~~~~~~-----ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~-~~~~~~~~ 335 (686)
.|++.+..-|.. +|.-+...+. +..|+++-..+...-... ..+|....+.+.+..+. +++++ +-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~-Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHL-YSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcch-hHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 366666555543 3555555565 778887777664332222 56777777777665322 22222 22222221
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 044251 336 GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK----PTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNA 411 (686)
Q Consensus 336 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 411 (686)
. .....|..........|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+... .+.
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 2 24556777777777889999998887643322211 11223344555666777777777777666542 122
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHH-HHHH----HcCCCCCHHHHH
Q 044251 412 KSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAF-ENML----REEIKPSIETYT 486 (686)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~----~~~~~p~~~~~~ 486 (686)
..|...+. +. -.|..+|....+.. |.. .+-..|.+..+...+-.+. +... ..+..|+ ..
T Consensus 579 s~l~~~l~------~~-p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk 642 (829)
T KOG2280|consen 579 SSLFMTLR------NQ-PLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LK 642 (829)
T ss_pred HHHHHHHH------hc-hhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HH
Confidence 22222221 11 23566666554421 111 1112222322322222211 1110 1122333 23
Q ss_pred HHHHHHHHcCCHH----------HHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044251 487 ALLDAFRRSGDTG----------MMMKIWKLMMSE-KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTY 555 (686)
Q Consensus 487 ~ll~~~~~~g~~~----------~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 555 (686)
....+|.+..... .-.++.+.+... +......+.+--+.-+...|+..+|.++-+++. -||-..|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 3334444433311 112222222211 323333445555666777899999999888765 6788889
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 556 NMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDV 634 (686)
Q Consensus 556 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a 634 (686)
-.=+.+++..+++++-+++-+.+. .+.-|.-.+.+|.+.|+.++|.+++.+.- |..--+..|-.++..-+|
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~l~ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--GLQEKVKAYLRVGDVKEA 789 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--ChHHHHHHHHHhccHHHH
Confidence 888999999999988877766554 24457778889999999999999987652 222133455555555444
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.24 Score=46.42 Aligned_cols=130 Identities=12% Similarity=-0.023 Sum_probs=75.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHH
Q 044251 274 SIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAI-----VYNTLI 348 (686)
Q Consensus 274 ~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-----~~~~li 348 (686)
+.++..+.-.+. +.-...++.+.++...+.++.....|++.-.+.|+.+.|...|+.+.+..-..+.. +.....
T Consensus 181 y~~~~~llG~kE-y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKE-YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchh-hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344444444444 66666777777776666667777777777777777777777777655432222222 222333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 349 NAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
..|.-++++..|...|.++...... |....|.-.-+..-.|+..+|.+.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444566677777777666655332 4444444444444456777777777777654
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.79 E-value=0.0043 Score=45.73 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=25.8
Q ss_pred HHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 209 VLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
.+.+.|++++|+..|+.+.... +.+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444455555554444422 23445555555555555555555555555543
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.73 E-value=0.0059 Score=44.99 Aligned_cols=55 Identities=9% Similarity=0.162 Sum_probs=27.7
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
...+.+.|++++|...|+++++. .| +...+..+..++...|++++|..+++++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555543 23 344555555555555555555555555544
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.71 E-value=0.007 Score=45.23 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG-QTSKLPQLLKEMAT 580 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~ 580 (686)
+.+|..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666677777777777777766654 335666677777777777 57777777766654
No 202
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.8 Score=45.97 Aligned_cols=283 Identities=12% Similarity=-0.027 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
.+.+......+.....|..|+..+..+....|.. ...|..-+..+...|++++|.--.+.-..... .....+.-.-+
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~--a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~ 125 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN--ASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQ 125 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc--hhhhchhHHHHHHHHhHhhcccchhhheecCC-Cccccccchhh
Confidence 3445566777888889999999999999987766 46677777777777777776654443322111 12223333344
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHH-HHHHHhcCC
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVK-LSQEVVGAL-MKSFCDEGL 321 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~~~l-i~~~~~~g~ 321 (686)
.+...++..+|.+.|+. ...| . ...++..++........ |.-.++-.+ ...+.-.|+
T Consensus 126 c~~a~~~~i~A~~~~~~---------~~~~-----------~-~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~ 184 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKS---------KQAY-----------K-AANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGD 184 (486)
T ss_pred hhhhhHHHHHHHHHhhh---------hhhh-----------H-HhhhhhhhhcccccccCCchhhHHHHhhhhhhhhccc
Confidence 44444444455444441 1111 0 12233333333322211 222222222 244556777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-------------HHHHHHHHh
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATF-------------NILMDAYSR 388 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------------~~ll~~~~~ 388 (686)
.++|.++--.+.+.... +....-.-..++.-.++.+.|...|++.+..+ |+...- ..-.+-..+
T Consensus 185 ~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 185 YDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred chhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 77777776666655311 22222222223344677788888887776653 332211 111222345
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHH
Q 044251 389 RMQPEIVEKLLLELQDM---GLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEK 465 (686)
Q Consensus 389 ~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (686)
.|.+..|.+.|.+.+.. ...++...|........+.|+. ++|+.-.+........ -...|..-..++...++|++
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl-~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL-REAISDCNEALKIDSS-YIKALLRRANCHLALEKWEE 339 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc-hhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 66666777766666543 2233444455555555555555 4455555554443100 01122222334444555666
Q ss_pred HHHHHHHHHH
Q 044251 466 AYAAFENMLR 475 (686)
Q Consensus 466 A~~~~~~m~~ 475 (686)
|.+-|++..+
T Consensus 340 AV~d~~~a~q 349 (486)
T KOG0550|consen 340 AVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHh
Confidence 6666655544
No 203
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.084 Score=50.54 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
..+........+...|++.+|..+|..+++..+.. ..+...++..|...|+.+.|..++..++............+-|
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44555566778888999999999999999887655 3677788888999999999999999888643222222223345
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGV-KLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g 320 (686)
..+.+.....+...+-.++... +-|...-..+...+...|+ .++|++.+-.+++++. .-|...-..++..+.-.|
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~-~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGR-NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 5555555555555554554442 2255555566666666776 6777666666655421 113334444444444443
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.67 E-value=0.57 Score=43.80 Aligned_cols=60 Identities=18% Similarity=0.134 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 311 ALMKSFCDEGLKNEALIIQMEMEKKGI--PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
.....+...|++++|...|+.+..... +--....-.++.++.+.|+++.|...|+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556677788888888888776522 222345556777778888888888888887765
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.64 E-value=0.85 Score=45.40 Aligned_cols=196 Identities=15% Similarity=0.130 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHH---HcCCHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREE-IKPSIE--TYTALLDAFR---RSGDTGMMM 502 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~--~~~~ll~~~~---~~g~~~~a~ 502 (686)
+.|..+-+.....-+. -...+...+...+..|+++.|+++++.-+... +.++.. .-..|+.+-+ -..+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 4455555544443222 24556677777788888888888877665432 233331 1122222211 112344454
Q ss_pred HHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 503 KIWKLMMSEKVEGTRV-TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 503 ~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
..-.+..+. .|+.. .--.-..++.+.|++.++-.+++.+-+....|+ ++ ++..+.+.|+ .+..-+++....
T Consensus 250 ~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCC--cHHHHHHHHHHH
Confidence 444444333 33322 222334567788888888888888777644443 32 2233445554 344333333221
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 044251 582 -NIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVK 635 (686)
Q Consensus 582 -g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~ 635 (686)
.++|| .+....+..+-...|++..|..--+.+.+ ..|....|-.+.++-++.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAe 375 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAE 375 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhc
Confidence 24554 56666777777778888877776666554 457777777777776554
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.60 E-value=0.038 Score=53.60 Aligned_cols=101 Identities=13% Similarity=0.036 Sum_probs=77.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHhcccCC--CCCCHHHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSL-VSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK--EFRDAHVYNAAISGL 245 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~ 245 (686)
..+..+.+.|++++|+..|+.++...|.. ..+.++..++.+|...|++++|+..|+.+...- .+....++-.++..+
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~ 227 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIM 227 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHH
Confidence 33334466799999999999999987765 346788888999999999999999999887521 112455666677788
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHH
Q 044251 246 FWCGRYDDAWKAYEAMEANNVRPDHV 271 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 271 (686)
...|+.++|.++|+.+.+. .|+..
T Consensus 228 ~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 228 QDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 8899999999999998876 46543
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.11 Score=50.09 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044251 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ---GQYLEARDVVSEFGKIGLQPTLMTYN 556 (686)
Q Consensus 480 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~ 556 (686)
-|...|..|..+|...|+++.|..-|....+.. +++...+..+..++... ....++..+|++++... +-|+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 345555555556666666666666555555553 34445555554444432 13445666666666554 33556666
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 557 MLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666666666666666666666653
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.55 E-value=0.35 Score=51.01 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH---------HHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 044251 305 SQEVVGALMKSFCDEGLKNEALIIQME---------MEKKGIPSNAIVYNTLINAYCKSNQ--LEEAEGLFQEMKTKGLK 373 (686)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~---------~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 373 (686)
....+.+-+..|...|.+++|.++--- +... ..+...++..=.+|.+..+ +-+.+.-++++++.|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 344455666778888888888754211 1100 0122233334445554443 23344445667777777
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044251 374 PTSATFNILMDAYSRRMQPEIVEKLLLE 401 (686)
Q Consensus 374 p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 401 (686)
|+... +...|+-.|.+.+|.++|.+
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 77654 44556667777777777754
No 209
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=1.6 Score=47.36 Aligned_cols=349 Identities=10% Similarity=0.028 Sum_probs=191.7
Q ss_pred cCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCC
Q 044251 228 QSKEFRDAHVYN-----AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR-SAKEAWEFFEKMNRKG 301 (686)
Q Consensus 228 ~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~~a~~~~~~m~~~~ 301 (686)
..|.+.+..-|. .+|+-+...+.+..|.++-.-+...-..- ...|......+.+..+ .-+++++.+.+=+...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 335555555444 46778888899999999888775321111 4455555555555422 1233444333333322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 302 VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPS----NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA 377 (686)
Q Consensus 302 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 377 (686)
. -....|..+.+.....|+.+-|..+++.=...+... +..-+...+.-..+.|+.+-...++-.|.+. .+..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 2 345568888888889999999998876533222110 1122334455556667777777766666543 1222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC-CCCChhhHhhhHHH
Q 044251 378 TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG-IKPTSHSYTALIHA 456 (686)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~ 456 (686)
.|...+ .+...|..+|.+..+.. |.. .+-+.|....+..+.|.-.++...... +.+-.........+
T Consensus 580 ~l~~~l------~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 SLFMTL------RNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHHHH------HhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 222211 23345566666654421 111 111222222122111111111110000 01111122233344
Q ss_pred HHhcCCHH---HH-------HHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 457 YSVGGWHE---KA-------YAAFENMLR-EEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 457 ~~~~g~~~---~A-------~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
+.+..... +| +.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -|+-..|-.-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 44443321 11 112222211 1222233445555666778899999988877664 677788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKR 605 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 605 (686)
+++..+++++-+++-+... .+.-|.-.+.+|.+.|+.+||.+++-+.- +.. -.+.+|.+.|++.+
T Consensus 724 aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~e 788 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKE 788 (829)
T ss_pred HHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHH
Confidence 9999999988877766532 35567888999999999999999987653 111 56788999999999
Q ss_pred HHHHHHH
Q 044251 606 AFFYHKQ 612 (686)
Q Consensus 606 A~~~~~~ 612 (686)
|.+.--+
T Consensus 789 Aad~A~~ 795 (829)
T KOG2280|consen 789 AADLAAE 795 (829)
T ss_pred HHHHHHH
Confidence 9887544
No 210
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.53 E-value=1 Score=45.10 Aligned_cols=106 Identities=16% Similarity=0.066 Sum_probs=76.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS 495 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 495 (686)
..+.-+...|.. ..|.++-.+.. .|+...|-..+.+|+..++|++-..+... .-++..|..++.+|.+.
T Consensus 182 ~Ti~~li~~~~~-k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 182 DTIRKLIEMGQE-KQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 334444445454 55666554442 36889999999999999999987765432 12447799999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 496 GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSE 542 (686)
Q Consensus 496 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 542 (686)
|+..+|..+...+ .+..-+..|.++|++.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999887772 125567889999999999876554
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.45 E-value=0.017 Score=43.70 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=35.8
Q ss_pred HHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 560 NAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSY 625 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 625 (686)
..|.+.+++++|.++++++...+ +.+...+.....++...|++++|.+.+++.++.+ |+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHHH
Confidence 34556666666666666666532 2245555556666666666666666666666543 444433
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.42 E-value=0.54 Score=47.62 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=58.1
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCC
Q 044251 194 EPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK---EFRDAHVYNAAISGLFW---CGRYDDAWKAYEAMEANNVR 267 (686)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~ 267 (686)
.+...++.+...++-.|-...+++.-+++.+.+.... ...+..+-...+-++.+ .|+.++|++++..+....-.
T Consensus 135 ~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 135 DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence 3445666777777777888888888888888776631 11233333345556666 78888888888885544446
Q ss_pred CCHHHHHHHHHHHH
Q 044251 268 PDHVTCSIMITAMR 281 (686)
Q Consensus 268 p~~~~~~~ll~~~~ 281 (686)
++..+|..+.+.|.
T Consensus 215 ~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 215 PDPDTLGLLGRIYK 228 (374)
T ss_pred CChHHHHHHHHHHH
Confidence 67777776666653
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.25 E-value=0.037 Score=48.68 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 044251 555 YNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMV-----KSGQVPDVKSYE 626 (686)
Q Consensus 555 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 626 (686)
...++..+...|++++|..+++.+.... +-|...|..++.+|...|+..+|+++|+++. +.|+.|++.+-.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3445555556666666666666666431 2245566666666666666666666665543 225556555433
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.23 E-value=0.99 Score=47.79 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
..|.++|..|-.. ..++......++|.+|..+-+..-+ ..||+ |....+-++...++++|.+
T Consensus 764 gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dV--y~pyaqwLAE~DrFeEAqk----- 825 (1081)
T KOG1538|consen 764 GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDV--YMPYAQWLAENDRFEEAQK----- 825 (1081)
T ss_pred chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccc--cchHHHHhhhhhhHHHHHH-----
Confidence 4455666655421 2344555566666666665554433 23332 2333333444444444433
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 509 MSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 509 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
+|.++|+-.+|..+++++..
T Consensus 826 -----------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 -----------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -----------------HHHHhcchHHHHHHHHHhhh
Confidence 44556777777777776643
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.20 E-value=0.31 Score=42.75 Aligned_cols=92 Identities=15% Similarity=-0.103 Sum_probs=75.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 602 (686)
...-+...|++++|..+|+-+...+ .-|..-|..|..+|-..+++++|+..|..+...+. -|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 3444557899999999999887766 33777788888999999999999999988876543 366667788889999999
Q ss_pred HHHHHHHHHHHHHC
Q 044251 603 FKRAFFYHKQMVKS 616 (686)
Q Consensus 603 ~~~A~~~~~~m~~~ 616 (686)
.+.|+..|+..+..
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998873
No 216
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=2.6 Score=46.40 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHH----HHHHccCChhHHHHHHHhcccCCCCCCH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLF----PVLGRARMGDDLMVLFKNLPQSKEFRDA 235 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 235 (686)
..+.+......+..+.+-..|.-|+.+-..-. .++.....+. ..+.+.|++++|..-|-+.... ..|.
T Consensus 330 ~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s- 401 (933)
T KOG2114|consen 330 HELIEKDLETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS- 401 (933)
T ss_pred eeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-
Confidence 33555666666777777777777776654432 1223333333 3344667777777666544321 1111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKS 315 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 315 (686)
.+|.-|....+..+-...++.+.+.|+ .+...-..|+.+|.+.++ .+.-.++.+..- .|.. ..-....+..
T Consensus 402 ----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd-~~kL~efI~~~~-~g~~--~fd~e~al~I 472 (933)
T KOG2114|consen 402 ----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKD-VEKLTEFISKCD-KGEW--FFDVETALEI 472 (933)
T ss_pred ----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcc-hHHHHHHHhcCC-Ccce--eeeHHHHHHH
Confidence 234455555566666666777777664 333344567777777776 554444443322 1211 1113445566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 316 FCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (686)
|.+.+-.++|..+-..... +......++ -..+++++|++.+..|
T Consensus 473 lr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 6666666666655443322 233333333 3356778887777655
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.19 E-value=0.08 Score=54.18 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHhccc
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSP-RACSVLFPVLGRARMGDDLMVLFKNLPQ 228 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (686)
-+.+.++.+...|...|++++|+..|+.++...|..... .+|..++.+|.+.|++++|+..+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 377888899999999999999999999999998876533 5689999999999999999999998776
No 218
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.18 E-value=0.44 Score=49.16 Aligned_cols=201 Identities=9% Similarity=0.063 Sum_probs=105.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 459 VGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARD 538 (686)
Q Consensus 459 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 538 (686)
+..+..+-++.-++.++ +.|+-.+...++ +-.......++++++++.++.+-. . |.+.......-.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s~~~~~~g~ 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----S-------LGKSQFLQHHGH 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----h-------hchhhhhhcccc
Confidence 34445555555555555 445443322222 222345577888888887765410 0 000000000000
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 539 VVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN-IKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
.++.+......+-..+=..|..++.+.|+.++|++.+++|.+.. ..-+..+...|+.++...+.+.++..++.+--+.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi- 324 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI- 324 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-
Confidence 11111111112223333457777788999999999999998642 1113557888999999999999999998875332
Q ss_pred CCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCcc
Q 044251 618 QVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQS 681 (686)
Q Consensus 618 ~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~ 681 (686)
..|...++.--..+|.+......... ...++.|+.-. -..|.+.+.++.+.+|..|+
T Consensus 325 ~lpkSAti~YTaALLkaRav~d~fs~------e~a~rRGls~a-e~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 325 SLPKSATICYTAALLKARAVGDKFSP------EAASRRGLSPA-EMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred cCCchHHHHHHHHHHHHHhhccccCc------hhhhhcCCChh-HHHHHHHHHHHHHhCCCCch
Confidence 23444433323334433222111100 01133343332 24588889999998886653
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.16 E-value=0.089 Score=46.03 Aligned_cols=99 Identities=11% Similarity=-0.016 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+-+........+...|++++|..+|+.+...++.. ++-|.-++.++-..+++++|+..|........ .|+..+-.+.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~ag 112 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHH
Confidence 34566677888999999999999999999877644 47788888888889999999999976544332 4555566788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
..|...|+.+.|...|....+.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHhC
Confidence 8999999999999999998873
No 220
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.16 E-value=1.2 Score=42.07 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+...+..-+....+.|++.+|...|+.+..+.|..+ -...+.-.++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~----------------------------------~~~qa~l~l~ 78 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP----------------------------------YSEQAQLDLA 78 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----------------------------------ccHHHHHHHH
Confidence 445555555555666666666666666665554332 2344555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc------CCC---HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN-NVRPDHVTCSIMITAMRKN------GRS---AKEAWEFFEKMNRKGVKLSQEVVGAL 312 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~------g~~---~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (686)
-++.+.+++++|+..+++.... +-.|| ..|..-|.+++.. .++ ...|..-|+++++.= |+.
T Consensus 79 yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS------ 149 (254)
T COG4105 79 YAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNS------ 149 (254)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCC------
Confidence 6777777777777777776554 22233 3444445444421 111 223333344444331 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcC
Q 044251 313 MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK--PTSATFNILMDAYSRRM 390 (686)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~ 390 (686)
.=...|...+..+... =...=..+...|.+.|.+..|..-+++|++.-.. -....+-.|..+|...|
T Consensus 150 -------~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 150 -------RYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG 218 (254)
T ss_pred -------cchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC
Confidence 1111222222222111 0111123556788888888888888888876211 11234556677788888
Q ss_pred CHHHHHHHHHHHHHc
Q 044251 391 QPEIVEKLLLELQDM 405 (686)
Q Consensus 391 ~~~~a~~~~~~m~~~ 405 (686)
-.++|.+.-+-+...
T Consensus 219 l~~~a~~~~~vl~~N 233 (254)
T COG4105 219 LTDEAKKTAKVLGAN 233 (254)
T ss_pred ChHHHHHHHHHHHhc
Confidence 888777766655443
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.16 E-value=1.8 Score=44.01 Aligned_cols=144 Identities=14% Similarity=0.109 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEK-VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTY-NMLMN 560 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~ 560 (686)
..|+..++...+..-++.|..+|-++.+.+ +.+++.++++++..++ .|+...|.++|+--... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777888888888999999999999888 6678889999998766 47889999999874432 2344333 45666
Q ss_pred HHHhcCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 561 AYGRGGQTSKLPQLLKEMATLNIKPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 561 ~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
-+.+.++-+.|..+|+..+.+ +..+ ..+|..+|..=...|+...+..+-+.|... .|-..+.+....-+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 677888889999999976653 3334 568999999889999999999988888763 46555555444444
No 222
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.13 E-value=1.9 Score=43.99 Aligned_cols=409 Identities=12% Similarity=0.086 Sum_probs=223.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccC----CCC----------CCH
Q 044251 170 LLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQS----KEF----------RDA 235 (686)
Q Consensus 170 l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~----------~~~ 235 (686)
+++++.. ++.+.-........+..|.. +......+..+.+.+.+++|++.+..-... ..+ +|.
T Consensus 52 ilnAffl-~nld~Me~~l~~l~~~~~~s--~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df 128 (549)
T PF07079_consen 52 ILNAFFL-NNLDLMEKQLMELRQQFGKS--AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF 128 (549)
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH
Confidence 4444443 23344444444444444422 233333344456788888888877543321 111 334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHc-------CCCHHHHHHHH-------HHH
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANN----VRPDHVTCSIMITAMRKN-------GRSAKEAWEFF-------EKM 297 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~-------g~~~~~a~~~~-------~~m 297 (686)
..-+..+..+.+.|++.++..+++++...= ..-+..+|+.++-.+.+. +.+.+-+-+.| .+|
T Consensus 129 ~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 129 FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 455667888999999999999988886542 336788888855444322 21122222222 222
Q ss_pred HHC------CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 298 NRK------GVKLSQEVVGALMKSFCDE--GLKNEALIIQMEMEKKGIPSNAI-VYNTLINAYCKSNQLEEAEGLFQEMK 368 (686)
Q Consensus 298 ~~~------~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (686)
... .+.|....+..++....-. .++.--.+++......-+.|+-. +...|+..+.. +.+++..+-+.+.
T Consensus 209 ~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia 286 (549)
T PF07079_consen 209 HAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIA 286 (549)
T ss_pred HHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHH
Confidence 221 1334444444444433321 12222233333333333444432 22334444433 5566665555543
Q ss_pred HCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHhcCCCCh---HHHHHHH
Q 044251 369 TKGLK----PTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSY-------TCLISAYGRPRKM---SDMAADA 434 (686)
Q Consensus 369 ~~g~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------~~ll~~~~~~~~~---~~~A~~~ 434 (686)
...+. -=..+|..++....+.++...|.+.+.-+.-. .|+...- ..+.+..+..... ...-+.+
T Consensus 287 ~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 287 SSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 32111 12357888889999999999999998887654 3333211 1122222311100 0223344
Q ss_pred HHHHHHcCCCCC--hhhHhhhHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHHc---CCHHHHHHH
Q 044251 435 FLRMKRVGIKPT--SHSYTALIHAYSVGGW-HEKAYAAFENMLREEIKPSIETYTAL----LDAFRRS---GDTGMMMKI 504 (686)
Q Consensus 435 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~---g~~~~a~~~ 504 (686)
++.....++... ++....-..-+.+.|. -++|+.+++..++- -+-|..+-+.+ =.+|... ..+.....+
T Consensus 365 we~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 365 WEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 445544433211 1111222334555555 89999999999873 12233333322 2344332 344555666
Q ss_pred HHHHHhcCCCCC----HHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 044251 505 WKLMMSEKVEGT----RVTFNILLDG--FAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 505 ~~~~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 578 (686)
-+-+.+.|++|- ...-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..++-++....++++|..++..
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~- 520 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK- 520 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-
Confidence 666667787763 4456666655 4468999998776555554 578999999999999999999999999985
Q ss_pred HHCCCCCCHHHHHHH
Q 044251 579 ATLNIKPDSVTYSTM 593 (686)
Q Consensus 579 ~~~g~~pd~~~~~~l 593 (686)
++|+..+++.-
T Consensus 521 ----LP~n~~~~dsk 531 (549)
T PF07079_consen 521 ----LPPNERMRDSK 531 (549)
T ss_pred ----CCCchhhHHHH
Confidence 47787777653
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.11 E-value=0.0093 Score=45.86 Aligned_cols=63 Identities=19% Similarity=0.362 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 553 MTYNMLMNAYGRGGQTSKLPQLLKEMATL--NIK---PD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 553 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|++++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566666666666666666666665532 011 12 44566677777777777777777776653
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.09 E-value=0.055 Score=47.58 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH-----HCCCCCCHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA-----TLNIKPDSVTY 590 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~~~ 590 (686)
+...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45556666777888888888888877765 4477788888888888888888888877764 34777776654
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.06 E-value=1.8 Score=43.18 Aligned_cols=293 Identities=19% Similarity=0.156 Sum_probs=136.6
Q ss_pred HHHHHHHHHH--ccCChhHHHHHHHhcccCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHH
Q 044251 202 ACSVLFPVLG--RARMGDDLMVLFKNLPQSKEFRDAHVYNAAI--SGLFWCGRYDDAWKAYEAMEANNVRPDHV--TCSI 275 (686)
Q Consensus 202 ~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ 275 (686)
.|..+-..+. -.|+-..|+++-.+... -...|......++ ++-.-.|+++.|.+-|+.|.. .|... ....
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 3444444333 34555566665544321 0111222222222 233446777777777777765 23321 1222
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH
Q 044251 276 MITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKG-IPSNAI--VYNTLINAYC 352 (686)
Q Consensus 276 ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~--~~~~li~~~~ 352 (686)
|.-...+.|. .+.|..+-+........ -.......+...|..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~Ga-reaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 160 LYLEAQRLGA-REAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHhccc-HHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 2222334454 55666666655544221 34566666777777777777777776654431 222221 1112222111
Q ss_pred ---HcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH
Q 044251 353 ---KSNQLEEAEGLFQEMKTKGLKPTSAT-FNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMS 428 (686)
Q Consensus 353 ---~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 428 (686)
-.-+...|...-.+..+ +.||.+. -.....++.+.|+..++-++++.+-+....|+.. ++..+.+.|+.
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt- 310 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT- 310 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc-
Confidence 12234444444333332 3344332 2223455666677777777777666654444432 22233444432
Q ss_pred HHHHHHHHHHHHc-CCCC-ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Q 044251 429 DMAADAFLRMKRV-GIKP-TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFR-RSGDTGMMMKIW 505 (686)
Q Consensus 429 ~~A~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~ 505 (686)
+..-+++.... .++| +..+...+..+-...|++..|..--+.... ..|....|..+.+.-. ..|+-+++...+
T Consensus 311 --a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 311 --ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred --HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 33333322221 1122 334444555555666666665555544444 3455555555555443 236666666666
Q ss_pred HHHHhc
Q 044251 506 KLMMSE 511 (686)
Q Consensus 506 ~~~~~~ 511 (686)
.+.++.
T Consensus 387 Aqav~A 392 (531)
T COG3898 387 AQAVKA 392 (531)
T ss_pred HHHhcC
Confidence 655544
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.95 E-value=0.041 Score=41.53 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=36.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 525 DGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
..|.+.+++++|.++++.+.... +.+...|.....++.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666777777777666655 335666666666667777777777777766653
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.74 E-value=2.7 Score=42.68 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 306 QEVVGALMKSFCDEGLKNEALIIQMEMEKKG---IPSNAIVYNTLINAYCK---SNQLEEAEGLFQEMKTKGLKPTSATF 379 (686)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~ 379 (686)
..+...++-.|....+++...++++.+...- +.....+-.....++-+ .|+.++|++++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344455555666667777777777665541 11122233334445555 67777777777775555455566677
Q ss_pred HHHHHHHHhc---------CCHHHHHHHHHHHH
Q 044251 380 NILMDAYSRR---------MQPEIVEKLLLELQ 403 (686)
Q Consensus 380 ~~ll~~~~~~---------~~~~~a~~~~~~m~ 403 (686)
..++..|-.. ...+.|...|.+.-
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF 253 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF 253 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 7666665321 12455555555543
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.71 E-value=0.019 Score=44.15 Aligned_cols=64 Identities=25% Similarity=0.254 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQ-PT-LMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
..+|+.+...|...|++++|+..|++..+. |.. |+ ..+++.+..+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346677777777777777777777776532 211 12 45677788888888888888888877653
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.67 E-value=0.17 Score=43.29 Aligned_cols=70 Identities=11% Similarity=-0.026 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHhcccCC
Q 044251 161 RVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSL-VSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK 230 (686)
Q Consensus 161 ~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (686)
..+...+..-.....+.|+|.+|.+.|+.+..+.|.. ....+-..++.+|.+.|++++|+..+++.....
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3477788888889999999999999999999986655 355666777788888888888888887766543
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=1.2 Score=41.38 Aligned_cols=206 Identities=18% Similarity=0.156 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
.+......+-....+++|-.-+..+..-..... .+-. ...-++.|.-+.+++.. ...-+..|+....+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnr---slfh------AAKayEqaamLake~~k--lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR---SLFH------AAKAYEQAAMLAKELSK--LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc---cHHH------HHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHH
Confidence 344445555566666666665555543221111 1111 12223444444444433 112345666677777
Q ss_pred HHcCCHHHHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 246 FWCGRYDDAWKAYEAMEAN--NVRPDH--VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~--g~~p~~--~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
..+|..+.|-..+++.-+. ++.|+. ..|..-+..+...++ ...|.+++ ..+-+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr-~~ma~el~---------------gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR-DQMAFELY---------------GKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch-HHHHHHHH---------------HHhhhHhhhhHH
Confidence 7777777666666554221 233432 122222322222222 33333333 333345556666
Q ss_pred HHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CC-CCHHHHHHHHHHHHhcCCHH
Q 044251 322 KNEALIIQMEMEKK-----GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG--LK-PTSATFNILMDAYSRRMQPE 393 (686)
Q Consensus 322 ~~~A~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~-p~~~~~~~ll~~~~~~~~~~ 393 (686)
+++|-..+.+-... ....--..|...|-.+.-..++..|.+.++.--+.+ .. -+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 66655444332111 011112235555556666778888888888754432 11 2445677777776 557777
Q ss_pred HHHHHH
Q 044251 394 IVEKLL 399 (686)
Q Consensus 394 ~a~~~~ 399 (686)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 666554
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.62 E-value=0.28 Score=41.47 Aligned_cols=98 Identities=10% Similarity=0.068 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY 595 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 595 (686)
|..++..++.++++.|+++....+++..- |+..+... ..+. --....+.|+..++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566677777777777777777766532 22211100 0000 1112346688888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 044251 596 AFVRVRDFKRAFFYHKQMVKS-GQVPDVKSYEKLRSILD 633 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~l~ 633 (686)
+|+..|++..|+++++...+. ++.-+..++..|++.-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888887766 77667778877777653
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.62 E-value=0.14 Score=52.55 Aligned_cols=64 Identities=9% Similarity=-0.010 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 481 SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTR---VTFNILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 481 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
+...++.+..+|...|++++|+..|++.++.+ +.+. .+|..+..+|...|++++|+..++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555566666666655555543 1122 2355555555555555555555555554
No 233
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=3 Score=45.92 Aligned_cols=148 Identities=12% Similarity=-0.001 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
+.+......|.+.|++++|...|-+.... .. -..++.-|....+.......++.+.+.|. .+..--..|+.+
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le----~s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLnc 440 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF---LE----PSEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNC 440 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc---CC----hHHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHH
Confidence 44556677788999999998877766543 11 12345556666677777788888887666 677777889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNE 324 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (686)
|.+.++.++-.+..+... .|.- ..-....+..|.+.+- .++|.-+-.+... +......+ +-..+++++
T Consensus 441 YiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny-l~~a~~LA~k~~~-----he~vl~il---le~~~ny~e 508 (933)
T KOG2114|consen 441 YIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY-LDEAELLATKFKK-----HEWVLDIL---LEDLHNYEE 508 (933)
T ss_pred HHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh-HHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHH
Confidence 999999988777666544 2211 1123445666666654 6666555443322 33444433 345788999
Q ss_pred HHHHHHHH
Q 044251 325 ALIIQMEM 332 (686)
Q Consensus 325 A~~~~~~~ 332 (686)
|++.+..+
T Consensus 509 Al~yi~sl 516 (933)
T KOG2114|consen 509 ALRYISSL 516 (933)
T ss_pred HHHHHhcC
Confidence 99988765
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.49 E-value=0.33 Score=41.05 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMS---------------EKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFG-K 545 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 545 (686)
..++..++.++++.|+.+....+++..-. ....|+..++.+++.+|+..|++..|.++++.+. .
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34455555555555555555555543321 1334556666666666666666666666666654 3
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 044251 546 IGLQPTLMTYNMLMNAYG 563 (686)
Q Consensus 546 ~~~~p~~~~~~~li~~~~ 563 (686)
.+++-+..+|..|+.-..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 444445556665554443
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.45 E-value=0.27 Score=46.79 Aligned_cols=103 Identities=13% Similarity=0.003 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHhcccCCC--CCCHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSL-VSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKE--FRDAHVYNAAIS 243 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~ 243 (686)
....+..+...|+|..|.+-|...++..|.. .++.++--|+.++...|++++|...|..+...-+ +.-+..+-.|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6667777888999999999999999986654 5778888899999999999999999988766321 134577888889
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHV 271 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 271 (686)
...+.|+.++|..+|+++.+. -|+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 999999999999999999876 56654
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.43 Score=46.35 Aligned_cols=95 Identities=9% Similarity=-0.014 Sum_probs=44.1
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYT----ALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFN 521 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 521 (686)
|...+...=.+|.-.|+.+.-...++++... ..++...|. .+.-++...|-++.|++.-++..+.+ +.|.-.-.
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~H 213 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASH 213 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHH
Confidence 4444554445555555555555555554433 222222111 22222334555555555555555444 44444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 044251 522 ILLDGFAKQGQYLEARDVVSE 542 (686)
Q Consensus 522 ~li~~~~~~g~~~~A~~~~~~ 542 (686)
++...+...|+..++.+++.+
T Consensus 214 a~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHHhcchhhhHHHHHHh
Confidence 444445555555555555444
No 237
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.19 E-value=0.17 Score=47.76 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 044251 287 AKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK-NEALIIQMEMEK 334 (686)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~ 334 (686)
-+-+++++++|...|+.||..+-..|+.++.+.+-. .+..++.-+|.+
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 356888888888888888888888888888877653 344555555554
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.88 Score=45.77 Aligned_cols=97 Identities=11% Similarity=-0.045 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 235 AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMK 314 (686)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 314 (686)
..+++.|..++.+.+++.+|++..+..++.+ ++|+-..-.--.++...|. ++.|+..|+++++..+. |..+-+.|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~-Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPS-NKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3467777888888888888888888877764 5566666666666777776 77777777777775422 3444444444
Q ss_pred HHHhcCCHHHH-HHHHHHHHH
Q 044251 315 SFCDEGLKNEA-LIIQMEMEK 334 (686)
Q Consensus 315 ~~~~~g~~~~A-~~~~~~~~~ 334 (686)
...+.....+. .++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 44443333322 455555543
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.10 E-value=4.5 Score=41.27 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcC-CCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044251 412 KSYTCLISAYGRPRKMSDMAADAFLRMKRVG-IKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLD 490 (686)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 490 (686)
..|+..+....+..+. +.|..+|-+..+.+ ..+++..++++|..++. |+..-|..+|+--... ++.+..-..-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl-~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGL-EAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4455666666666555 66777777777776 45667777777766554 5566777777765553 2223333344555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 491 AFRRSGDTGMMMKIWKLMMSEKVEGT--RVTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 491 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
-+...++-..|..+|+..++.= ..+ ...|..+|+.-.+-|++..+..+=++|...
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 5667777777777777555431 111 346777777777777777777766666553
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.99 E-value=1.7 Score=45.00 Aligned_cols=163 Identities=15% Similarity=0.116 Sum_probs=94.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044251 241 AISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 320 (686)
++.-.-+..+.+.-.+.-.+..+. .||..+.-.++..-. .. ...++.++|++..+.|-. .+.+..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAEEe-A~-Ti~Eae~l~rqAvkAgE~-----------~lg~s~ 238 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAEEE-AS-TIVEAEELLRQAVKAGEA-----------SLGKSQ 238 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhccccc-cc-CHHHHHHHHHHHHHHHHH-----------hhchhh
Confidence 344444556666666666666654 566644433332211 12 278899999988875411 011100
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKP-TSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
..+..-..++....+...+-..+-..|..++.+.|+.++|++.|++|.+..... .......|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 011111122222333333344555667888889999999999999997653222 3335667999999999999999999
Q ss_pred HHHHHcCC-CCCHHHHHHHH
Q 044251 400 LELQDMGL-EPNAKSYTCLI 418 (686)
Q Consensus 400 ~~m~~~~~-~p~~~~~~~ll 418 (686)
.+..+... +.-..+|+..+
T Consensus 319 ~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhccccCCchHHHHHHHHH
Confidence 98754432 22345565544
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=94.98 E-value=1.9 Score=44.64 Aligned_cols=115 Identities=9% Similarity=-0.013 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 044251 463 HEKAYAAFENMLRE-EIKPSI-ETYTALLDAFRRS---------GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQG 531 (686)
Q Consensus 463 ~~~A~~~~~~m~~~-~~~p~~-~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 531 (686)
.+.|+.+|.+.... ...|+. ..|..+..++... .+..+|.++-+..++.+ +.|..+...+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 46677777777622 244443 4444443333211 12334444555555544 445555555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 532 QYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
+++.|...|++....+ +-...+|-.....+.-.|+.++|.+.+++..
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555555555443 2234444445555555555555555555544
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.96 E-value=1.3 Score=47.28 Aligned_cols=165 Identities=13% Similarity=0.042 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEAN-NVRPDH-----VTCSIMITAMRKN---GRSAKEAWEFFEKMNRKGVKLSQE 307 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-----~~~~~ll~~~~~~---g~~~~~a~~~~~~m~~~~~~~~~~ 307 (686)
....++....=.|+-+.+++++.+..+. |+.-.. ..|+.++..++.. +.+.+.|.+++..+.++- |+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcH
Confidence 3556777777788888888888877554 222111 2355555544443 445888999999998763 4555
Q ss_pred HHH-HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 308 VVG-ALMKSFCDEGLKNEALIIQMEMEKKG---IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILM 383 (686)
Q Consensus 308 ~~~-~li~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 383 (686)
.|. .-.+.+...|++++|.+.|+...... .......+--+.-.+.-.++|++|.+.|..+.+..-- +...|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 444 34577788999999999999755321 1223455666777888899999999999999886332 344444443
Q ss_pred H-HHHhcCCH-------HHHHHHHHHHHH
Q 044251 384 D-AYSRRMQP-------EIVEKLLLELQD 404 (686)
Q Consensus 384 ~-~~~~~~~~-------~~a~~~~~~m~~ 404 (686)
. ++...++. ++|.++|.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 34456777 889999988754
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=3.3 Score=40.01 Aligned_cols=141 Identities=11% Similarity=0.131 Sum_probs=95.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 569 (686)
......|++..|..+|+...... +-+...--.++.+|...|+.+.|..++..+-...-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34566788888888888887665 33455666778888888888888888887542211112222233455566666666
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 044251 570 KLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQ-VPDVKSYEKLRSILDV 634 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~l~a 634 (686)
+...+-.+.-. .| |...-..+...+...|+.++|.+.+=.+++... .-|...-..+++++.+
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 66666666654 45 677778888888999999999888877776622 2456677777887754
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.45 Score=47.79 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAF 597 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~ 597 (686)
+++.|.-+|.+.+++.+|+..-++.+..+ ++|....--=..+|...|+++.|...|+++++ +.|+ ..+-+.|+..-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 44555556666666666666666666655 44666655566666677777777777777765 3553 33334444333
Q ss_pred HHcCCH-HHHHHHHHHHHHC
Q 044251 598 VRVRDF-KRAFFYHKQMVKS 616 (686)
Q Consensus 598 ~~~g~~-~~A~~~~~~m~~~ 616 (686)
.+...+ +...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 333333 3346667766643
No 245
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.89 E-value=6.4 Score=41.89 Aligned_cols=410 Identities=11% Similarity=0.044 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..|..++.---.....+.++..++.+.. ..|-----|-.....=.+.|..+.+.++|++-.. |++.++..|...+.-+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~-kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLS-KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHh-hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 3444444333333344556667776664 2322223455555555667778888888888765 3455666676666655
Q ss_pred HHcCCCHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---c-
Q 044251 281 RKNGRSAKEAWEFFEKMNRK-GVK-LSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK---S- 354 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~- 354 (686)
.....+.+...+.|+.+... |.. .....|..+|..-..++++.....+++..++. ....|+..-.-|.+ .
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQN 199 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcC
Confidence 55444466777777777654 211 13455666676667777777777777777765 33333333333322 1
Q ss_pred -----CCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 044251 355 -----NQLEEAEGLFQEMKTK----GLKPTSATFNILMDAYS-RRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRP 424 (686)
Q Consensus 355 -----g~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 424 (686)
...+++.++-...... ........+..-+.--. ..+..+++...+.+... ..-.++...
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s 268 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKS 268 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhh
Confidence 1222222222211110 00000011111110000 00111111111111000 000001111
Q ss_pred CChHHHHHHHHHHHHHc---CCC----CChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044251 425 RKMSDMAADAFLRMKRV---GIK----PTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 425 ~~~~~~A~~~~~~~~~~---~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
... ......|+.-... .++ ++..+|..-+.--...|+.+.+.-+|+...-- +..-...|-..+.-....|+
T Consensus 269 ~~~-~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 269 EEE-EEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGD 346 (577)
T ss_pred HhH-HHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCc
Confidence 000 1122222222221 111 13456777777777788888888888776532 11122334444444445577
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCccHHH---H
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLM-TYNMLMNAYGRGGQTSKLP---Q 573 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~ 573 (686)
.+.+..++....+..++....+--.-....-..|+++.|..+++.+...- |+.. .-..-+....+.|+.+.+. +
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 77777777766655433333222222222334678888888888876543 3322 2222334455677777666 3
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 574 LLKEMATLNIKPD--SVTYSTMIY-AFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 574 l~~~m~~~g~~pd--~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
++.........+. ...+....+ .+.-.++.+.|..++.+|... ..++...|..++.+.
T Consensus 425 l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 425 LYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 3333322111111 122222222 233457778888888887763 234445555555554
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.89 E-value=2 Score=35.99 Aligned_cols=139 Identities=10% Similarity=0.131 Sum_probs=76.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 458 SVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEAR 537 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 537 (686)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+. .| ...+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD----------is~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD----------ISKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-----------GGG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------chhhcchHHHH
Confidence 4456777777777776653 24444554444434444444444444444221 11 12334444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 538 DVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 538 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
..+-.+ ..+....+..+..+...|+-+.-.+++.++... -.+++.....+..+|.+.|+..++-+++.++-+.|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 443322 124455666777788888888888888887653 36788888888888888888888888888888887
Q ss_pred C
Q 044251 618 Q 618 (686)
Q Consensus 618 ~ 618 (686)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 5
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.87 E-value=0.96 Score=37.63 Aligned_cols=93 Identities=13% Similarity=0.002 Sum_probs=64.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHH---HHHHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAH---VYNAAISGLFW 247 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~ 247 (686)
.-.+...|+++.|++.|...+..-|.. +.+|+.-..++.-+|+.++|+.=+++..+.....+.. .|.--...|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 556778888888888888888776544 3778888888888888888887777655433323332 33334456677
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 044251 248 CGRYDDAWKAYEAMEANN 265 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g 265 (686)
.|+-+.|..=|+..-+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 788888887777776655
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.75 E-value=1.4 Score=46.97 Aligned_cols=162 Identities=12% Similarity=-0.027 Sum_probs=103.3
Q ss_pred HhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHH
Q 044251 450 YTALIHAYSVGGWHEKAYAAFENMLREEIKPSI------ETYTALLDAFRR----SGDTGMMMKIWKLMMSEKVEGTRVT 519 (686)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 519 (686)
+..++...+=.|+-+.+++.+.+..+.+---.+ -.|..++..+.. ..+.+.|.+++..+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 444556666667777777777766543211111 223333333332 456778888888888653 44444
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 520 FN-ILLDGFAKQGQYLEARDVVSEFGKIG---LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY 595 (686)
Q Consensus 520 ~~-~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 595 (686)
|. .-.+.+...|++++|.+.|++..... .+.....+--+++++.-.+++++|.+.|.++.+.. .-...+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 43 34455667899999999998755211 12234455667888899999999999999999753 234556655555
Q ss_pred HH-HHcCCH-------HHHHHHHHHHH
Q 044251 596 AF-VRVRDF-------KRAFFYHKQMV 614 (686)
Q Consensus 596 ~~-~~~g~~-------~~A~~~~~~m~ 614 (686)
+| ...|+. ++|.+++.++-
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44 567888 88888888764
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.75 E-value=3.7 Score=38.49 Aligned_cols=190 Identities=20% Similarity=0.074 Sum_probs=89.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 178 GLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQS-KEFRDAHVYNAAISGLFWCGRYDDAWK 256 (686)
Q Consensus 178 g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (686)
+.+..+...+.......+..............+...+.+..+...+...... ........+..+...+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555554332212244555555566666666666655554431 122444555555666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 257 AYEAMEANNVRPDHVTCSIMIT-AMRKNGRSAKEAWEFFEKMNRKGV--KLSQEVVGALMKSFCDEGLKNEALIIQMEME 333 (686)
Q Consensus 257 ~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 333 (686)
.+.........+ ......... .+...|+ ++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGD-YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 666665542122 111111222 4445555 5666666666544211 0122223333333444555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 334 KKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 334 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
..........+..+...+...++++.|...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 441111234444444455555555555555555444
No 250
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.60 E-value=0.61 Score=44.22 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044251 356 QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRR----------------MQPEIVEKLLLELQDMGLEPNAKSYTCLIS 419 (686)
Q Consensus 356 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 419 (686)
.++-....++.|.+.|+.-|..+|+.|++++-+. .+-+-+++++++|...|+.||..+-..|+.
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444445555555555555555555544221 112335566666666666666666666666
Q ss_pred HhcCCCChHHHHHH
Q 044251 420 AYGRPRKMSDMAAD 433 (686)
Q Consensus 420 ~~~~~~~~~~~A~~ 433 (686)
++++.+-...+..+
T Consensus 167 ~FGr~~~p~~K~~R 180 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKR 180 (406)
T ss_pred HhccccccHHHHHH
Confidence 66665443333333
No 251
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.54 E-value=2.7 Score=37.30 Aligned_cols=134 Identities=13% Similarity=0.184 Sum_probs=72.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 256 KAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 256 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
+.++.+...+++|+...+..++..+.+.|+ +. .+.++++.++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~-~~----~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQ-FS----QLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HH----HHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 444555556667777777777777777765 32 3444555555555544443332221 2233344444444443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 336 GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 336 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
=...+..++..+...|++-+|+++.+..... +......++.+....+|...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1123555666777777777777777664322 222234456666666666665566655544
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.47 E-value=0.9 Score=37.78 Aligned_cols=92 Identities=18% Similarity=0.115 Sum_probs=68.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHHcC
Q 044251 455 HAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRV---TFNILLDGFAKQG 531 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g 531 (686)
-++...|+++.|++.|.+.+.. .+-....|+.-.+++.-.|+.++|+.-+++.++..-+-+.. .|-.-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567788899999999888875 44567888888889988899999998888888763233332 2333344566788
Q ss_pred CHHHHHHHHHHHHhCC
Q 044251 532 QYLEARDVVSEFGKIG 547 (686)
Q Consensus 532 ~~~~A~~~~~~~~~~~ 547 (686)
+-+.|..-|+.....|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888877776
No 253
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=9.9 Score=41.76 Aligned_cols=105 Identities=9% Similarity=-0.013 Sum_probs=78.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
++.+.+.+.|++|+...+......+...........+..|.-.|++++|-.+.-.|.. .+...|.-.+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 7888999999999999888877766544557788888899999999999998888876 678888888888888777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRK 282 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 282 (686)
..... .-+....-..+...|..++..+..
T Consensus 439 l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 65433 223332112355678888877765
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.33 E-value=0.63 Score=44.36 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC-CCC-CHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQ--PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN-IKP-DSVTYSTMI 594 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-d~~~~~~li 594 (686)
.|+.-++. .+.|++..|...|...++.... -....+-.|+.++...|++++|..+|..+.+.- -.| -+.++--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 57766654 5668899999999998876522 123445568999999999999999999998641 112 257888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 595 YAFVRVRDFKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
....+.|+.++|..+|+++.+.= |+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y--P~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY--PGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC--CCCHH
Confidence 89999999999999999998853 65543
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.03 E-value=3.1 Score=35.99 Aligned_cols=122 Identities=7% Similarity=0.138 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044251 487 ALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG 566 (686)
Q Consensus 487 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 566 (686)
.++..+...+........++.+...+ ..+...++.++..|++.+. .+....++. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444555555666666666665554 3455566666666665432 333333331 112222334566666666
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 567 QTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRV-RDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631 (686)
Q Consensus 567 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 631 (686)
.++++..++.++.. +...+..+... ++++.|++++.+- .+++.|..+++.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~ 134 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKA 134 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHH
Confidence 66666666665531 12222222223 6677777666541 245555555443
No 256
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.82 E-value=3.5 Score=34.58 Aligned_cols=64 Identities=25% Similarity=0.276 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
..+..++.+...|+-+.-.++++++.+.+ .+++...-.+..+|.+.|+..++.++++++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555666666666666666655433 55666666666666677766666666666666664
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.76 E-value=1.7 Score=45.84 Aligned_cols=163 Identities=14% Similarity=0.107 Sum_probs=107.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC 248 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (686)
.......-++++++++++.+.-.-. | .........++..+-+.|.++.|+++-+. . ..-.....+.
T Consensus 266 ~~fk~av~~~d~~~v~~~i~~~~ll-~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~l 331 (443)
T PF04053_consen 266 LEFKTAVLRGDFEEVLRMIAASNLL-P-NIPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQL 331 (443)
T ss_dssp HHHHHHHHTT-HHH-----HHHHTG-G-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHC
T ss_pred HHHHHHHHcCChhhhhhhhhhhhhc-c-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhc
Confidence 3355566688899988777522211 1 11245678888888999999999887543 2 1235566788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 249 GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALII 328 (686)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (686)
|+++.|.++.++ ..+...|..|.......|+ ++.|.+.|.+... +..|+-.|.-.|+.+.-.++
T Consensus 332 g~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~-~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 332 GNLDIALEIAKE------LDDPEKWKQLGDEALRQGN-IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp T-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTB-HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred CCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCC-HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 999999876544 3467799999999999998 9999988887643 55677778888998888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 329 QMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 329 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (686)
.+.....|- +|....++...|+.++..+++.+-
T Consensus 396 ~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 396 AKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 888887753 455556666778888888887653
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.76 E-value=4.5 Score=35.69 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HH
Q 044251 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDH-VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQE---VV 309 (686)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~---~~ 309 (686)
+...|.+.+. +++.|..++|+.-|..+.+.|..--. ..-..+.......|+ ...|...|.++-.....|-.. .-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgd-ta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGD-TAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhccc-HHHHHHHHHHHhccCCCcchhhHHHH
Confidence 4445555544 35667777888888887766532221 122223334455665 677777777776654333322 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 310 GALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
.--...+...|.++......+-+...|-+.......+|.-+-.+.|++..|.++|..+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1122345567777777666666655555555566666777777777777777777777654
No 259
>PRK11906 transcriptional regulator; Provisional
Probab=93.70 E-value=6.1 Score=40.99 Aligned_cols=146 Identities=10% Similarity=-0.008 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHc-CCCCC-hhhHhhhHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044251 429 DMAADAFLRMKRV-GIKPT-SHSYTALIHAYSVG---------GWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 429 ~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
+.|..+|.+.... ...|+ ...|..+..++... ....+|.++-+...+.+ +-|......+..+....++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcc
Confidence 5677777777621 22333 34444444443321 23345666666666643 3466777777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHH
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT-LMTYNMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~ 576 (686)
++.+..+|++....+ +....+|......+.-+|+.++|.+.+++..++.+..- ..+....+..|+..+ +++|+.++-
T Consensus 354 ~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 354 AKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred hhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 888888888887776 55566666666666777888888888887665532211 122222333455444 466666654
Q ss_pred H
Q 044251 577 E 577 (686)
Q Consensus 577 ~ 577 (686)
+
T Consensus 432 ~ 432 (458)
T PRK11906 432 K 432 (458)
T ss_pred h
Confidence 3
No 260
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.69 E-value=10 Score=39.50 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=59.4
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 044251 218 DLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKM 297 (686)
Q Consensus 218 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m 297 (686)
....+|..... ....|+..|...+..+.+.+.+.+...+|.+|.... +.++..|.....-....+..++.|..+|.+.
T Consensus 89 rIv~lyr~at~-rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATN-RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 34555665554 454689999999988888888999999999987762 2233444443333334444488888888888
Q ss_pred HHCCCCCCHHHHHHH
Q 044251 298 NRKGVKLSQEVVGAL 312 (686)
Q Consensus 298 ~~~~~~~~~~~~~~l 312 (686)
++.+.. ++..|...
T Consensus 167 LR~npd-sp~Lw~ey 180 (568)
T KOG2396|consen 167 LRFNPD-SPKLWKEY 180 (568)
T ss_pred hhcCCC-ChHHHHHH
Confidence 876432 34444433
No 261
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.60 E-value=8.3 Score=38.25 Aligned_cols=131 Identities=9% Similarity=0.228 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCC-CCh
Q 044251 358 EEAEGLFQEMKTKGLKPTSATFNILMDAYSR--RM----QPEIVEKLLLELQDMGL---EPNAKSYTCLISAYGRP-RKM 427 (686)
Q Consensus 358 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~-~~~ 427 (686)
++.+.+++.|.+.|++-+..+|-+....... .. ....+..+|+.|.+... .++...+..++..-... ...
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l 158 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHH
Confidence 3445566666666666565555443322222 11 23456666666665432 23444555554431111 112
Q ss_pred HHHHHHHHHHHHHcCCCCCh--hhHhhhHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044251 428 SDMAADAFLRMKRVGIKPTS--HSYTALIHAYSVGGW--HEKAYAAFENMLREEIKPSIETYTAL 488 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l 488 (686)
.+.+..+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 24455666666665544322 222222222111111 23566666666666666655554443
No 262
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.59 E-value=12 Score=39.97 Aligned_cols=396 Identities=10% Similarity=0.010 Sum_probs=193.0
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 044251 181 GCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF-WCGRYDDAWKAYE 259 (686)
Q Consensus 181 ~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~ 259 (686)
+.+...+..++...|... -.|...+..=.+.|..+.+.++|++..+ +.+.++..|......+. ..|+.+...+.|+
T Consensus 62 ~~~r~~y~~fL~kyPl~~--gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCY--GYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhhCccHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 444556666666665443 4455556666678888899999998877 56567777776655443 4677777788888
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---Hhc------CCHHHHHHH
Q 044251 260 AMEAN-NVR-PDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSF---CDE------GLKNEALII 328 (686)
Q Consensus 260 ~m~~~-g~~-p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~------g~~~~A~~~ 328 (686)
..... |.. -...-|...|.--..+++ +.....+|++.++.- ..-++.....| .+. ...+++.++
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks-~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKS-WKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhcccc-HHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 87654 322 244567777776666665 888888888888642 11222222111 111 122333322
Q ss_pred HHHHHHC---C-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 329 QMEMEKK---G-IPSNAIVYNTLINAYCK-SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 329 ~~~~~~~---g-~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
-...... + .......+..-+.--.. .+.++++.....+.. ...-.++-...........++.-.
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2222210 0 00000111110000000 001111111100000 000011111111222222222222
Q ss_pred HcC---C----CCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 404 DMG---L----EPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE 476 (686)
Q Consensus 404 ~~~---~----~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 476 (686)
+.. + .++..+|..-+..-...|+. +.+.-.|+...--- ..-...|-..+.-....|+.+-|..++....+-
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~-~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDF-SRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccH-HHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 110 1 12344455555555555454 44555555443210 001122333333334447777777766665554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHHHHhCCCCCCHH
Q 044251 477 EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEAR---DVVSEFGKIGLQPTLM 553 (686)
Q Consensus 477 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~ 553 (686)
-++-...+--.-...+...|++..|..+++.+.+.- +.-..+-..-+....+.|+.+.+. .++..... | .-+..
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~ 437 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNG 437 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcc
Confidence 232222222222223455678888888888888765 333444444455666778888777 33333322 1 22333
Q ss_pred HHHHHHHHH-----HhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 044251 554 TYNMLMNAY-----GRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVR 601 (686)
Q Consensus 554 ~~~~li~~~-----~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 601 (686)
+.+.+.--+ .-.++.+.|..++.+|.+. +.++...|..++.-+...+
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 333333222 2356778888888888874 4556777777777665554
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.55 E-value=4.4 Score=35.05 Aligned_cols=84 Identities=12% Similarity=0.007 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
.++..+...+........++.+...+ ..+....+.++..|++.. ....++.+.. ..+......+++.|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 34455555555666666666655554 244455566666665543 2334444331 01222233355555555
Q ss_pred CCHHHHHHHHHHH
Q 044251 320 GLKNEALIIQMEM 332 (686)
Q Consensus 320 g~~~~A~~~~~~~ 332 (686)
+.++++..++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.43 E-value=2.6 Score=44.40 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=81.4
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF 527 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 527 (686)
...+.++..+.+.|..+.|+.+..+-.. -.....+.|+++.|.++.++ ..+...|..|.+..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 3366667777777777777766543222 12234567777777766432 23566788888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 607 (686)
.+.|+++-|.+.|++..+ |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 888888888888876432 55677777777877777777776666541 444445555667777777
Q ss_pred HHHHH
Q 044251 608 FYHKQ 612 (686)
Q Consensus 608 ~~~~~ 612 (686)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.29 E-value=9.5 Score=37.93 Aligned_cols=58 Identities=17% Similarity=0.047 Sum_probs=29.6
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHcCC---C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 452 ALIHAYSVGGWHEKAYAAFENMLREEI---K--PSIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~m~~~~~---~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
.+..++...+.++++++.|+...+--. . .....+..+...|.+..|++++.-+..+..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 344555555566666666665543210 1 112445555555666666666555554443
No 266
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.27 E-value=1.9 Score=38.89 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=44.8
Q ss_pred HHHHhcCCccHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 044251 560 NAYGRGGQTSKLPQLLKEMATLNIKPDS----VTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVK 635 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~ 635 (686)
..+...|++++|+.-++..... .-|. .+--.|.+.....|.+|+|+.++......+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~------------------ 156 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES------------------ 156 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc------------------
Confidence 4455566666666666655531 1111 111223445555566666666555443222
Q ss_pred hhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCC
Q 044251 636 VATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHP 677 (686)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p 677 (686)
|.++...+.+-..+.+|++++|+..|.++..+.+
T Consensus 157 --------w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 157 --------WAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred --------HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 3333333334444455666666666666666654
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.25 E-value=9.3 Score=37.72 Aligned_cols=164 Identities=15% Similarity=0.079 Sum_probs=80.0
Q ss_pred hHhhhHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 449 SYTALIHAYSVGGWH---EKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 449 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
++..++.+|...+.. ++|..+++.+... .+-.+..+..-+..+.+.++.+.+.+++..|+..- ......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 445556666665554 3455555555443 22234455555666666777777777777777652 212233333333
Q ss_pred HH---HHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH----HHHHHhcCC------ccHHHHHHHHHHHC-CCCCCHHHH
Q 044251 526 GF---AKQGQYLEARDVVSEFGKIGLQPTLM-TYNML----MNAYGRGGQ------TSKLPQLLKEMATL-NIKPDSVTY 590 (686)
Q Consensus 526 ~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l----i~~~~~~g~------~~~A~~l~~~m~~~-g~~pd~~~~ 590 (686)
.+ .. .....|...+..+....+.|... ....+ +....+.++ ++.+.+++...... +.+.+..+-
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 22 22345556665555333344332 11111 111112222 33344444433221 222333332
Q ss_pred H---HH----HHHHHHcCCHHHHHHHHHHHHH
Q 044251 591 S---TM----IYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 591 ~---~l----i~~~~~~g~~~~A~~~~~~m~~ 615 (686)
. +| +..+.+.++|++|.++++..+.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2 23 2345678899999999986653
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.17 E-value=7.4 Score=36.34 Aligned_cols=168 Identities=14% Similarity=0.110 Sum_probs=105.1
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLD-AFRRSGDTGMMMKIWKLMMSEKV--EGTRVTFNI 522 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ 522 (686)
....+..+...+...+.+..+...+.........+ ......... .+...|+++.+...+........ ......+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 172 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLA 172 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 34445555555566666677777777666542222 111222222 56777777777777777755221 123334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQP-TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRV 600 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~ 600 (686)
....+...++.+.|...+.+..... .. ....+..+...+...++++.|...+...... .|+ ...+..+...+...
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLEL 249 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHc
Confidence 4444667788888888888877654 33 4677777888888888888888888888753 343 44555555555566
Q ss_pred CCHHHHHHHHHHHHHCC
Q 044251 601 RDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 601 g~~~~A~~~~~~m~~~g 617 (686)
|..+++...+.+..+..
T Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 250 GRYEEALEALEKALELD 266 (291)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 77888888888877654
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.16 E-value=16 Score=40.15 Aligned_cols=245 Identities=18% Similarity=0.134 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhc
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINA-----YCKSNQLEEAEGLFQEMKT-------KGLKPTSATFNILMDAYSRR 389 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~ 389 (686)
...|.+.++...+.| +...-..+..+ +....+.+.|+.+|+.+.. .| .....+-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 455666666666665 22322222222 2344577777777777655 34 222445566666553
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHH----hc
Q 044251 390 M-----QPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYS----VG 460 (686)
Q Consensus 390 ~-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~ 460 (686)
. +.+.|..++...-+.| .|+...+...+......++....|.++|......|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 5666888887777766 3455555444444443112235788888888777632 22222222222 23
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HH----cCCH
Q 044251 461 GWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF---AK----QGQY 533 (686)
Q Consensus 461 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~----~g~~ 533 (686)
.+.+.|..++++.-+.| .|...--...+..+.. +..+.+.-.+..+.+.+.+.....-..++... .. ..+.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence 46678888888887776 2222222222223333 66666666666666655322111111111111 11 1245
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCccHHHHHHHHHHHC
Q 044251 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG----GQTSKLPQLLKEMATL 581 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~ 581 (686)
..+...+.+....| +......|...|... .+++.|...+......
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 56666666655544 455555555555433 2355555555555543
No 270
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.98 E-value=6.3 Score=35.06 Aligned_cols=134 Identities=14% Similarity=0.247 Sum_probs=78.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Q 044251 361 EGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRP-RKMSDMAADAFLRMK 439 (686)
Q Consensus 361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~~A~~~~~~~~ 439 (686)
.++++.+.+.++.|+...+..+++.+.+.|++.... ++...++-+|.......+-.+... ......+.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 355566667778888888888888888888765443 344445555555554444333322 112233444444443
Q ss_pred HcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 440 RVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 440 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
. .+..++..+...|++-+|+.+.+..... +......++.+....+|...-..+++-..+
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3566777888889999888888765322 111224455666666666555555555544
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=3.8 Score=40.13 Aligned_cols=157 Identities=11% Similarity=0.001 Sum_probs=105.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-C--CCCCHHHHHHHHHHHHhcC
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK-G--VKLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~-~--~~~~~~~~~~li~~~~~~g 320 (686)
.+-..|++.+|-..++++.+. .+.|..++...=.++..+|+ ...-...+++++.. + .+-...+...+.-.+...|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~-~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGN-QIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccc-hhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 344567888888888888765 25677888888888988998 77788888888754 2 2222333344455566889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK---GLKPTSATFNILMDAYSRRMQPEIVEK 397 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~ 397 (686)
-+++|.+.-++..+.+ +.|...-.++.+.+-..|++.++.++..+-... +--.-...|=...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999988888774 347777888888888899999998877653321 000001112223334456688888888
Q ss_pred HHHHHH
Q 044251 398 LLLELQ 403 (686)
Q Consensus 398 ~~~~m~ 403 (686)
+|+.-.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 887643
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.92 E-value=22 Score=41.20 Aligned_cols=65 Identities=8% Similarity=0.020 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHhccc
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQ--EPSLVSPRACSVLFPVLGRA-RMGDDLMVLFKNLPQ 228 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 228 (686)
+.....-++.++.+++|.+|....+.-.-. .-...++..|.--+.++.+. ++.+-...++..+..
T Consensus 677 R~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~ 744 (1265)
T KOG1920|consen 677 RILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKE 744 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhccc
Confidence 344556688888888888876655554322 11122356666656666554 445555555555543
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.70 E-value=6.3 Score=34.60 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=59.2
Q ss_pred HHHHHHHHHH---HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 518 VTFNILLDGF---AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMI 594 (686)
Q Consensus 518 ~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 594 (686)
.+.+.|+... .+.++.+++..++.-+.-..+. ....-..-.+.+.+.|++.+|..+|+++.+. .|....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHH
Confidence 3444444433 3567888888888887765321 2333333456677888999999999988754 34333333444
Q ss_pred HHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 595 YAF-VRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 595 ~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
..| ...|+.+ =..+-.++++.+ +|+.+-..+..++
T Consensus 85 A~CL~~~~D~~-Wr~~A~evle~~--~d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 85 ALCLYALGDPS-WRRYADEVLESG--ADPDARALVRALL 120 (160)
T ss_pred HHHHHHcCChH-HHHHHHHHHhcC--CChHHHHHHHHHH
Confidence 433 3444432 222334455555 4444444333333
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.69 E-value=0.26 Score=32.69 Aligned_cols=32 Identities=9% Similarity=-0.042 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSL 197 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~ 197 (686)
.+..+...+.+.|++++|.++|+++++..|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44556667777777777777777777766644
No 275
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.42 E-value=9.7 Score=36.16 Aligned_cols=195 Identities=16% Similarity=0.165 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHcCCH
Q 044251 462 WHEKAYAAFENMLREEIKP---SIETYTALLDAFRRSGDTGMMMKIWKLMMSE-----KVEGTRVTFNILLDGFAKQGQY 533 (686)
Q Consensus 462 ~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~ 533 (686)
.+++|+.-|++.++....- ....+..++....+.|++++.+..|.+++.- .-.-+....|.+++......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 4455555555544421111 1123333444555556665555555554421 0122344556666655555555
Q ss_pred HHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCccHHHHHHHHHHHCCC----CCC-------HHHHHHHHHHH
Q 044251 534 LEARDVVSEFGKI-GLQPTL----MTYNMLMNAYGRGGQTSKLPQLLKEMATLNI----KPD-------SVTYSTMIYAF 597 (686)
Q Consensus 534 ~~A~~~~~~~~~~-~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~pd-------~~~~~~li~~~ 597 (686)
+--..+++.-++. .-..|. .|-.-|...|...|.+.+..++++++...-- .-| ..+|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5554444442211 001122 2334577788888888888888888764311 111 34566666677
Q ss_pred HHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhC
Q 044251 598 VRVRDFKRAFFYHKQMVKS-GQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRH 676 (686)
Q Consensus 598 ~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~ 676 (686)
....+-..-..++++.+.- .-.|.+.+...+.++ -++|.+..|+..+|.--|.++.+-+
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIREC--------------------GGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIREC--------------------GGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHc--------------------CCccccccchHHHHHhHHHHHHhcc
Confidence 7777767777777766533 223444432222111 1455667777888887777776654
No 276
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.41 E-value=22 Score=39.77 Aligned_cols=165 Identities=10% Similarity=0.061 Sum_probs=89.5
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHhcCC--CCCC--HHHHHHHHHHHHccCChhHHHHHHHhcccCC----CCCCHHH
Q 044251 167 CVQLLELMA-NDGLLGCCLYFYEWMRLQEP--SLVS--PRACSVLFPVLGRARMGDDLMVLFKNLPQSK----EFRDAHV 237 (686)
Q Consensus 167 ~~~l~~~l~-~~g~~~~Al~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~ 237 (686)
...++..|. ...+++.|..++++....-. ...+ -..-..++.++.+.+... |.+.+++..+.- ...-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 345566665 77889999999998765522 1111 122334566666666655 777777644321 1112233
Q ss_pred HHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCC---------C
Q 044251 238 YNAA-ISGLFWCGRYDDAWKAYEAMEANN---VRPDHVTCSIMITAMRKNGRS-AKEAWEFFEKMNRKGV---------K 303 (686)
Q Consensus 238 ~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~-~~~a~~~~~~m~~~~~---------~ 303 (686)
+.-+ +..+...+++..|++.++.+...- ..|-...+-.++.++...... .+++.+.++++..... .
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 3333 333334478998998888875431 133344444455444433221 5667777766643211 2
Q ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 044251 304 LSQEVVGALMKSFC--DEGLKNEALIIQMEM 332 (686)
Q Consensus 304 ~~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 332 (686)
|...++..+++.++ ..|++..+...++.+
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 24456666666554 466666666554443
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.27 E-value=1.6 Score=42.26 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
++..++..+..+|+++.+...++++.... +-+...|..||.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 45555566666666666666666666554 3356666666666666666666666666554
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.14 E-value=0.44 Score=31.57 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
+..+...|...|++++|.++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 279
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.89 E-value=3.7 Score=37.15 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=86.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPT-----LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVR 599 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~ 599 (686)
-+.+.|++++|..-|.+++..- ++. ...|..-..++.+.+.++.|+.-..+..+. .|+ ...+..-..+|-+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 3456678888888777776653 222 344555566777888888888887777764 443 3334444567888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHH
Q 044251 600 VRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFW 670 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~ 670 (686)
...+++|++=|+++++.. |...-...-+.-|.-.....+-+....+++-++...-++.++..-..+-|.
T Consensus 181 ~ek~eealeDyKki~E~d--Ps~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFGlStdnFq 249 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD--PSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFILSPFGLSTDNFQ 249 (271)
T ss_pred hhhHHHHHHHHHHHHHhC--cchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccee
Confidence 889999999999988754 655544444444433444444455566666665544445545444445454
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.76 E-value=6.8 Score=34.41 Aligned_cols=72 Identities=15% Similarity=0.035 Sum_probs=40.5
Q ss_pred HccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 044251 211 GRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR 285 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 285 (686)
.+.++.+++..+++.+.--.+ .....-..-...++..|+|.+|+.+|+++.+. .|.......|+..|....+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP-~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRP-EFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALG 92 (160)
T ss_pred HccCChHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcC
Confidence 355666666666665544222 22333333344566777777777777777665 3554455555555555444
No 281
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.63 E-value=5.3 Score=34.35 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=44.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKV--EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYG 563 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 563 (686)
.....+.|+++.|.+.|+.+...-. +-...+.-.|+.+|.+.+++++|...+++++++.+..--.-|-..+.+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344566777777777777665521 22344555667777777777777777777776654322334444444443
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.59 E-value=2.4 Score=38.27 Aligned_cols=94 Identities=16% Similarity=0.020 Sum_probs=43.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPS-LVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
.++......|++++|+..++|.+....+ ...+-+-..+.++....|.+|+|+.+++.....+. .......-.+++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 4445555555556665555555543211 11112222334445555555555555555443111 12223333445555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 044251 248 CGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~ 264 (686)
.|+-++|+.-|....+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 55555555555555544
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.53 E-value=32 Score=39.97 Aligned_cols=136 Identities=13% Similarity=0.203 Sum_probs=81.2
Q ss_pred HhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 450 YTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTA----LLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
|.-.++.--+.|.+.+|+.++ .|+...+.. ..+.+...+.++.|.-.|+..=+ ..-.+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHH
Confidence 333344444555566665554 345544443 34444555666666655554321 123456
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLM--TYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDF 603 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 603 (686)
+|..+|++.+|..+..++.. ..+.. +-..|+.-+...+++-+|-+++.+... .| .-.+..|++...|
T Consensus 974 a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~-----~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DP-----EEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CH-----HHHHHHHhhHhHH
Confidence 67778888888888776542 22322 225677888899999999999988874 22 2334456677778
Q ss_pred HHHHHHHHHH
Q 044251 604 KRAFFYHKQM 613 (686)
Q Consensus 604 ~~A~~~~~~m 613 (686)
++|+.+....
T Consensus 1043 ~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1043 EEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHhc
Confidence 8888776544
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.36 E-value=8.4 Score=38.28 Aligned_cols=230 Identities=13% Similarity=0.027 Sum_probs=135.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHccCChhHHHHHH----HhcccCCCCC---CHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLV-SPRACSVLFPVLGRARMGDDLMVLF----KNLPQSKEFR---DAHVYNAAI 242 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~---~~~~~~~li 242 (686)
...|..+.++.+|+..+...+..-.+.. .-.++..+..+..+.|.+++++..- +...+ ... --..|..+.
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~--~~ds~~~~ea~lnla 90 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE--LEDSDFLLEAYLNLA 90 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5566778888888887777765522111 1245556667777888887754422 11111 111 123455566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC-CCCC-CH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN-NVRP-DH--VTCSIMITAMRKNGRSAKEAWEFFEKMNRKG-----VKLSQEVVGALM 313 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~--~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li 313 (686)
+++-+--++.+++.+-..-... |..| .. ....++-.+..-.+. ++.+++.|+...+.. ......++..|.
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~-fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV-FQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH-HHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 6666666666666665554432 2222 11 122334455555555 889999999887652 223345788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHH
Q 044251 314 KSFCDEGLKNEALIIQMEMEK----KGIPSNAIVY-----NTLINAYCKSNQLEEAEGLFQEMKT----KGLKPT-SATF 379 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~----~g~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~ 379 (686)
..|.+..++++|.-+..+..+ .|+..-..-| ..|.-++...|.+-.|.+.-++..+ .|-.+. ....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999998866655433 2332111222 3344567778888888777776543 342221 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 380 NILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 380 ~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
..+.+.|...|+.+.|..-|++..
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHH
Confidence 567788888999988887777653
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.36 E-value=9.9 Score=33.68 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=69.2
Q ss_pred HccCChhHHHHHHHhcccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHH--HHHHcCCC
Q 044251 211 GRARMGDDLMVLFKNLPQSKEFRDA-HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHV-TCSIMIT--AMRKNGRS 286 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~--~~~~~g~~ 286 (686)
++.+..++|+..|..+...|...-+ -..--+.......|+...|...|++.-...-.|-.. -...|-. .+..+|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs- 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS- 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc-
Confidence 4556666677777666665543211 122223445566777777777777765543333322 1111111 2334454
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 287 AKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
++......+-+...+-+.....-..|.-+-.+.|++..|.+.|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666666666655554444555566666677777777777777776653
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.07 E-value=0.53 Score=29.57 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~ 614 (686)
+|..|...|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888855
No 287
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.76 E-value=13 Score=34.18 Aligned_cols=186 Identities=16% Similarity=0.100 Sum_probs=88.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAW 255 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (686)
.-|.+.-|.--|...+...|..+ .+|+.++.-+...|+++.|.+.|+.+.+-.+.-+-...|.-|. +.--|++.-|.
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~--~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcH--HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhH
Confidence 33444444445555555555443 7777777777777888878777777766443223333333333 23356777776
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 044251 256 KAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEF-FEKMNRKGVKLSQEVVGALM-KSFCDEGLKNEALIIQMEME 333 (686)
Q Consensus 256 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~-~~~m~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~ 333 (686)
+-|-..-... +.|+ |.++---+....-++.+|..- .++..+. +..-|...| ..|...-..+.+.+-.....
T Consensus 154 ~d~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a 226 (297)
T COG4785 154 DDLLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKADA 226 (297)
T ss_pred HHHHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHhhc
Confidence 6555554331 1121 222221122222224444433 2333221 322232222 22211111111111111100
Q ss_pred HCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 334 KKG---IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG 371 (686)
Q Consensus 334 ~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (686)
..+ ...=..+|--|..-+...|+.++|..+|+-....+
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 000 00024567777888888888888888888777653
No 288
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.52 E-value=16 Score=34.74 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=34.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 316 FCDEGLKNEALIIQMEMEKKG--IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
-.+.|++++|.+.|+.+..+- -+-...+.-.++.++.+.++++.|+..+++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 345677777777777776552 1223445555666777777777777777776654
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.19 E-value=3.6 Score=39.94 Aligned_cols=77 Identities=12% Similarity=0.214 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCCHHHHHHH
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFG-----KIGLQPTLMTYNML 558 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l 558 (686)
++..++..+...|+.+.+...++.++... +-+...|..++.+|.+.|+...|+..|+.+. +.|+.|-..+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455555666666666666666666655 5566666666777777777666666666654 35666666665555
Q ss_pred HHH
Q 044251 559 MNA 561 (686)
Q Consensus 559 i~~ 561 (686)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 290
>PRK09687 putative lyase; Provisional
Probab=89.61 E-value=22 Score=34.99 Aligned_cols=136 Identities=10% Similarity=-0.043 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 481 SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQG-QYLEARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 481 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
+..+-...+.++.+.++. .+...+-.++.. ++..+-...+.++.+.+ ....+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 444555555666665553 344444444432 23334444444444432 13345555555442 44666666677
Q ss_pred HHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 560 NAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
.++.+.|. ..|+..+-++.+.+ + .....+.++...|+. +|...+.++.+.. ||..+..+.++.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 77777776 45555555555432 2 234566677777774 5777777776533 5666666555554
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.60 E-value=5.2 Score=36.29 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044251 235 AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDH--VTCSIMITAMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~a~~~~~~m~~ 299 (686)
...+..+...|.+.|+.++|++.|.++.+....+.. ..+-.+|......++ +..+...+.++..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d-~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD-WSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH
Confidence 346777888888888888888888888776443332 345566666666666 7777666666554
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.52 E-value=37 Score=37.34 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=72.7
Q ss_pred ccCChhHHHHHHHhccc-------CCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 212 RARMGDDLMVLFKNLPQ-------SKEFRDAHVYNAAISGLFWCG-----RYDDAWKAYEAMEANNVRPDHVTCSIMITA 279 (686)
Q Consensus 212 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 279 (686)
...+.+.|+..|..... .+ .....+.+..+|.+.. +...|+.+|...-+.| .|+....-..+.-
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 45666777777766544 22 2334555566665532 4566777777766655 3443322222211
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 044251 280 MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFC--DEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQL 357 (686)
Q Consensus 280 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 357 (686)
....+++...|.++|....+.|.. ....+.+++.... ...+...|..++....+.|. +...--...+..+.. +++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccc
Confidence 111113356677777777766632 1111111111111 22355666666666666652 222222222233333 555
Q ss_pred HHHHHHHHHHHHCC
Q 044251 358 EEAEGLFQEMKTKG 371 (686)
Q Consensus 358 ~~A~~~~~~m~~~g 371 (686)
+.+.-.+..+.+.|
T Consensus 414 ~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 414 DTALALYLYLAELG 427 (552)
T ss_pred cHHHHHHHHHHHhh
Confidence 55555555555544
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.30 E-value=20 Score=33.85 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 554 TYNMLMNAYGRGGQTSKLPQLLKEMATLNI--KP-DSVTYSTMIYAFVRVRDFKRAFFYHK 611 (686)
Q Consensus 554 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p-d~~~~~~li~~~~~~g~~~~A~~~~~ 611 (686)
.|-..|-.|....++..|.+.++.-.+.+- .+ +..+...|+.+| ..|+.+++..++.
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 355556666666677777777776443221 22 466777777665 4577776665543
No 294
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.01 E-value=16 Score=40.65 Aligned_cols=368 Identities=11% Similarity=0.108 Sum_probs=147.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHCCCCCCHH--HHHH
Q 044251 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR------SAKEAWEFFEKMNRKGVKLSQE--VVGA 311 (686)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~~a~~~~~~m~~~~~~~~~~--~~~~ 311 (686)
++|-.+.++|++++|.++..+.... .......+...+..+....+ .-+....-|++..+.....|+. ..-.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 5777889999999999998555433 23334556677777765422 1234555556555544322332 2222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044251 312 LMKSFCDEGLKNEALIIQMEMEKKGIPSNAI--VYNTLINAYCKS---------NQLEEAEGLFQEMKTKGLKPTSATFN 380 (686)
Q Consensus 312 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~ 380 (686)
+|. .|...+-.. ..+-.+.. .|-.|...-... -.+++..+.+.+.-+....++.. .-
T Consensus 195 ilg-~cD~~~~~~----------~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~~-p~ 262 (613)
T PF04097_consen 195 ILG-RCDLSRRHL----------PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGSN-PL 262 (613)
T ss_dssp HHH-T--CCC-S-----------TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------
T ss_pred HHh-cCCccccch----------HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccchh-HH
Confidence 221 111100000 00011111 222221111111 01222222222222222333111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC-CCChhhHhhhHHHHHh
Q 044251 381 ILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI-KPTSHSYTALIHAYSV 459 (686)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~ 459 (686)
....++.-.|+++.|.+.+.. ..+...+.+++...+..|+-..-. +... ..+..... .+...-+..||..|++
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~-~~~~---~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVS-DSSS---APLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCC-Cccc---cceeeecCCCCCCcCHHHHHHHHHH
Confidence 234455567899999988876 223355777777777766543211 1111 11211110 1112557777877776
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHH-----------HHHHH---HHhcCCCCCHH---
Q 044251 460 ---GGWHEKAYAAFENMLREEIKPSIETYT-ALLDAFRRSGDTGMMM-----------KIWKL---MMSEKVEGTRV--- 518 (686)
Q Consensus 460 ---~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~-----------~~~~~---~~~~~~~~~~~--- 518 (686)
..+..+|+++|--+....-+.....+. .+-......++++..+ .++++ ++... .+...
T Consensus 337 ~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~-~~~~~~~~ 415 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFD-DDEDFLRE 415 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-S-SSSHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCC-CcHHHHHH
Confidence 356788888877665432211122222 2222223333332211 11111 11111 11222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC-----------ccHHHHHHHHHHHCC----
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY-GRGGQ-----------TSKLPQLLKEMATLN---- 582 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~-----------~~~A~~l~~~m~~~g---- 582 (686)
+......-+...|++++|..+|.-+.+.. .-....|.++.-. ..... ...|..+.+.....+
T Consensus 416 i~~~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~ 493 (613)
T PF04097_consen 416 IIEQAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISS 493 (613)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHh
Confidence 22334445667888888888887654211 0122233333222 22222 123344443333211
Q ss_pred -CCC-CHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 044251 583 -IKP-DSVTYSTMIY-----AFVRVRDFKRAFFYHKQMVKSGQVPDV-KSYEKLRSIL 632 (686)
Q Consensus 583 -~~p-d~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~l 632 (686)
+.+ +..|+..|+. .+...|++++|++.++++ ++.|.. .....+.+.+
T Consensus 494 ~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L---~liP~~~~~V~~~a~~f 548 (613)
T PF04097_consen 494 KVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL---DLIPLDPSEVRRCAENF 548 (613)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT---T-S-S-HHHHHHHHHCG
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCCHHHHHHHHHHH
Confidence 111 2445555543 346789999999888765 677743 3334444433
No 295
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.96 E-value=29 Score=35.43 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 515 GTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQP---TLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 515 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
....+|..++..+.+.|.++.|...+.++...+... .+...-.-+..+...|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777777778888888888777776543111 233333445556667777777777776665
No 296
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.95 E-value=26 Score=34.82 Aligned_cols=131 Identities=19% Similarity=0.282 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCH-
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCK--SN----QLEEAEGLFQEMKTKGL---KPTSATFNILMDAYSRRMQP- 392 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~- 392 (686)
++...+++.+.+.|+.-+..+|-+....+.. .. ....|..+|+.|++... .++..++..|+.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455777888888887777666553333322 22 35678899999988742 2344555555443 33443
Q ss_pred ---HHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCCh--HHHHHHHHHHHHHcCCCCChhhHhhhHH
Q 044251 393 ---EIVEKLLLELQDMGLEPNAK-SYTCLISAYGRPRKM--SDMAADAFLRMKRVGIKPTSHSYTALIH 455 (686)
Q Consensus 393 ---~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~li~ 455 (686)
+.++.+|+.+.+.|+..+.. -+.+-+-+++..... ...+.++++.+.+.|++.....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 55677888888878766432 333333333332222 2367888999999998887777766543
No 297
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.76 E-value=47 Score=37.53 Aligned_cols=89 Identities=15% Similarity=0.029 Sum_probs=40.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 044251 246 FWCGRYDDAWKAYEAMEANNVRPDH-------VTCSIMITAMRKNGRSAKEAWEFFEKMNRKG----VKLSQEVVGALMK 314 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~ 314 (686)
.-..++++|..++.++...-..|+. ..|+.+-........+++.+.++.+..+..= .......+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3456666666666665433112111 2344443333322222566665555554431 1122333444445
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 044251 315 SFCDEGLKNEALIIQMEMEK 334 (686)
Q Consensus 315 ~~~~~g~~~~A~~~~~~~~~ 334 (686)
+..-.|+++.|..+.....+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH
Confidence 55555666666555554443
No 298
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.41 E-value=1.1 Score=28.06 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (686)
+|+.|..+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888887743
No 299
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.03 E-value=52 Score=37.19 Aligned_cols=223 Identities=15% Similarity=0.065 Sum_probs=117.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhcCCCChHHHHHHHHHHHHHc----CCCCChhhHhhhHH
Q 044251 387 SRRMQPEIVEKLLLELQDMGLEPNA-------KSYTCLISAYGRPRKMSDMAADAFLRMKRV----GIKPTSHSYTALIH 455 (686)
Q Consensus 387 ~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 455 (686)
....++.+|..++.++...-..|+. ..++.+-.......+..+.|.++.+..... -.......+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567888888888887654222221 123333332222223336777776665543 23345667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHH--HHHHHHcCCH--HHHHHHHHHHHhc---CCC---CCHHHHHH
Q 044251 456 AYSVGGWHEKAYAAFENMLREEIKPSIETY---TAL--LDAFRRSGDT--GMMMKIWKLMMSE---KVE---GTRVTFNI 522 (686)
Q Consensus 456 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~l--l~~~~~~g~~--~~a~~~~~~~~~~---~~~---~~~~~~~~ 522 (686)
+..-.|++++|..+.++..+....-+...+ ..+ ...+...|+. ...+..+...... ..+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999888776553222233222 222 2334555632 2333333333322 111 12234445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH----hCCCCCCHHHH--HHHHHHHHhcCCccHHHHHHHHHHHCCCCC----CHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFG----KIGLQPTLMTY--NMLMNAYGRGGQTSKLPQLLKEMATLNIKP----DSVTYST 592 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~~~~~ 592 (686)
++.++.+ ++.+..-...-. .....|-...+ ..|+..+...|++++|...+.++......+ +..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555554 343333332222 22222222222 367777888999999999998887643333 3333333
Q ss_pred HHH--HHHHcCCHHHHHHHHHH
Q 044251 593 MIY--AFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 593 li~--~~~~~g~~~~A~~~~~~ 612 (686)
.+. .....|+.+.|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 333 22456888887777665
No 300
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.99 E-value=14 Score=34.16 Aligned_cols=124 Identities=11% Similarity=0.021 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 044251 555 YNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS--GQVPDVKSYEKLRSI 631 (686)
Q Consensus 555 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~ 631 (686)
.+.-+..+.+.+.+.+++.+.++-++. +| |...-..++..|+-.|+|++|..-++-+-.. ...+-...|.+++..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344455666667777777777666654 44 4445556666777777777777666655433 223344667666666
Q ss_pred HHhhh------h-----hcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 632 LDVKV------A-----TKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 632 l~a~~------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
..... . ......|...+-.-.... ..|.+.-...+-+++.+..|..+-+
T Consensus 82 ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h--~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 82 EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALH--SDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcc--cCCcchHHHHHHHHHHhhCCCCCcc
Confidence 53321 0 112344544443332322 1223344555667888888865544
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.90 E-value=6.8 Score=35.55 Aligned_cols=97 Identities=19% Similarity=0.105 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCC---CCHHHHHH
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT--LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIK---PDSVTYST 592 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---pd~~~~~~ 592 (686)
..+..+.+.|++.|+.+.|.+.|.++.+....+. ..++-.+|......|++..+...+.++...--. ++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566777888888888888888888776543333 344566777777888888888877776542112 12111111
Q ss_pred HHH--HHHHcCCHHHHHHHHHHHH
Q 044251 593 MIY--AFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 593 li~--~~~~~g~~~~A~~~~~~m~ 614 (686)
... ++...|++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 222 3356789999988887664
No 302
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.87 E-value=7.4 Score=41.34 Aligned_cols=45 Identities=9% Similarity=-0.060 Sum_probs=21.1
Q ss_pred ccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 212 RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 212 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (686)
+.|+++.|.++..+. .+..-|..|.++....|++..|.+.|....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 444444444443332 233345555555555555555555554443
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.86 E-value=1.4 Score=27.04 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 588 VTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 588 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
.+|..++.++...|++++|+..++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666666777777777777776665
No 304
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.85 E-value=26 Score=33.45 Aligned_cols=268 Identities=13% Similarity=0.150 Sum_probs=138.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhcCCCC
Q 044251 355 NQLEEAEGLFQEMKTKGLKPTSA---TFNILMDAYSRRMQPEIVEKLLLELQDM---GL--EPNAKSYTCLISAYGRPRK 426 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~ 426 (686)
..+++|+.-|++.++....-... ....++....+.+++++.+..|.+|+.. .+ .-+..+.|+++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35666666666665542221222 2334566666677777766666666421 11 1234455666655544433
Q ss_pred hHHHHHHHHHHHHHc-----CCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCHHHHHHHHH
Q 044251 427 MSDMAADAFLRMKRV-----GIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI-----------KPSIETYTALLD 490 (686)
Q Consensus 427 ~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~~~~~~ll~ 490 (686)
+ +.....|+...+. +-..-..+-+.|...|...|.+.+...+++++...-. ..-...|..-|+
T Consensus 121 m-~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 121 M-DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred h-HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 3 4333444332211 0011112334566777788888888888877754311 112356888889
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHH-----HHHcCCHHHHHHHH-HHHH---hCCCCCCHHH---HHH
Q 044251 491 AFRRSGDTGMMMKIWKLMMSEKV-EGTRVTFNILLDG-----FAKQGQYLEARDVV-SEFG---KIGLQPTLMT---YNM 557 (686)
Q Consensus 491 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~-----~~~~g~~~~A~~~~-~~~~---~~~~~p~~~~---~~~ 557 (686)
.|....+-.....+|++.+...- -|.+... .+|.- ..+.|++++|..-| +.+. +.| .|...+ |-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLV 277 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLV 277 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHH
Confidence 99888888888888888775432 2333333 33333 34678888876543 3333 334 333222 344
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 558 LMNAYGRGGQTSKLPQLLKEMATLNI--KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 558 li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
|...+.+.|- .-|+.-..... .|.....+.|+.+|. .++..+-.++++.- +..+..|+-+-+++-+++
T Consensus 278 LANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~-~~~IM~DpFIReh~EdLl 347 (440)
T KOG1464|consen 278 LANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSN-RSNIMDDPFIREHIEDLL 347 (440)
T ss_pred HHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhh-hccccccHHHHHHHHHHH
Confidence 4445554441 00100011111 233455677887775 45555555555432 335667776555555554
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.68 E-value=0.6 Score=28.91 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcCCccHH
Q 044251 552 LMTYNMLMNAYGRGGQTSKL 571 (686)
Q Consensus 552 ~~~~~~li~~~~~~g~~~~A 571 (686)
...|+.|...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444443333
No 306
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.67 E-value=23 Score=32.72 Aligned_cols=163 Identities=15% Similarity=0.071 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVK-LSQEVVGA 311 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~~~ 311 (686)
.-+.+||.|.--+...|+++.|.+.|+...+....-+-...|.-|. +.-.|+ +..|.+-+.+.-+.+.. |-...|.-
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR-~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGR-YKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCc-hHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 4567899999999999999999999999988632112222233332 334566 88888888777776532 21222222
Q ss_pred HHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------CCCHHHHHHHHH
Q 044251 312 LMKSFCDEGLKNEALII-QMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGL------KPTSATFNILMD 384 (686)
Q Consensus 312 li~~~~~~g~~~~A~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~~~~~ll~ 384 (686)
+ --..-++.+|..- .+..... |..-|...|-.|.- |++. ...+++.+.+-.- ..=..||--|..
T Consensus 175 l---~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K 245 (297)
T COG4785 175 L---NEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGK 245 (297)
T ss_pred H---HHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 2 2234456666643 3334333 55566555544432 2211 1122333322110 012457888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 044251 385 AYSRRMQPEIVEKLLLELQDMG 406 (686)
Q Consensus 385 ~~~~~~~~~~a~~~~~~m~~~~ 406 (686)
-+...|+.++|..+|+-.....
T Consensus 246 ~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 246 YYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhccccHHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.63 E-value=1.4 Score=26.84 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 588 VTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 588 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
..+..+..++...|++++|++.++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456667777777777777777777765
No 308
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.51 E-value=53 Score=36.74 Aligned_cols=256 Identities=10% Similarity=0.038 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..-..-...+++.+++...+..+.. .+.+.......+.+....|+.++|.+....+-..| ......++.++..+
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~ 173 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVW 173 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHH
Confidence 3334444456667777766663322 13566666777777888888877777777765444 33455677777777
Q ss_pred HHcCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 281 RKNGRS-AKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD------------EGLKNEALIIQMEMEKKGIPSNAIVYNTL 347 (686)
Q Consensus 281 ~~~g~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 347 (686)
.+.|.- .+..++-+..+...| +......++..+.. ..+...+..++ ..++++...-..+
T Consensus 174 ~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~-----~~~~~~~~~~~~~ 245 (644)
T PRK11619 174 QQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA-----RTTGPTDFTRQMA 245 (644)
T ss_pred HHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh-----hccCCChhhHHHH
Confidence 755541 223333344444333 22222222221100 00011111100 0111222111111
Q ss_pred HHHH--HHcCCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 044251 348 INAY--CKSNQLEEAEGLFQEMKTKG-LKPTS--ATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYG 422 (686)
Q Consensus 348 i~~~--~~~g~~~~A~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 422 (686)
+.++ ....+.+.|..++..+.... ..+.. ..+..+.......+...++..++........ +.....--+....
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al 323 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHH
Confidence 2122 12445677777777664432 22221 1233333333333224455555554432221 2233333333333
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHH
Q 044251 423 RPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENML 474 (686)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 474 (686)
..++. +.+...+..|.... .-...-.--+..++...|+.++|...|+.+.
T Consensus 324 ~~~dw-~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 324 GTGDR-RGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HccCH-HHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44455 55666676664422 1233444556666666788888888887763
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.42 E-value=14 Score=31.94 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=27.3
Q ss_pred cCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 213 ARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 213 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
.++++++..+++.|.--.+ .....-..-...+...|++++|+.+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 5556666666655543222 22222222334456667777777777777665
No 310
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.33 E-value=2.8 Score=37.41 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRD-----------FKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+|+.=|++++. +.|+ ..++..+..+|...+. +++|...|+++.. ..|+.++|.+-+++-
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 34444444443 4665 4677777777765542 5666666666665 458888888887776
No 311
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.77 E-value=0.92 Score=28.07 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=22.7
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 505 WKLMMSEKVEGTRVTFNILLDGFAKQGQYLEAR 537 (686)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 537 (686)
|++.++.. |.+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555 667778888888888888888775
No 312
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.50 E-value=46 Score=35.00 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 340 NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
|....-+++..+..+..+.-+..+..+|+..|- +...|..++.+|... ..+.-..+++++.+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 444444555555555555555555555554432 344455555555544 334445555554443
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.46 E-value=21 Score=30.94 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCC
Q 044251 168 VQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK 230 (686)
Q Consensus 168 ~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (686)
..++..-...+.++++..++..+....|.......+.. ..+..+|++++|+++|+.+...+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 34455556689999999999999998887765555544 45568999999999999998753
No 314
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.12 E-value=9.6 Score=34.61 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=57.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 044251 455 HAYSVGGWHEKAYAAFENMLREEIKPSI-----ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK 529 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 529 (686)
.-+.++|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|+.--.+.++.+ +....++-.-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3466778888888888887775 33322 334444455667777777777777776665 3333333444556667
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 044251 530 QGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~ 547 (686)
...+++|+.-|+++....
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 777777777777766543
No 315
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.01 E-value=14 Score=33.16 Aligned_cols=76 Identities=20% Similarity=0.124 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----------ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ-----------TSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-----------~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 602 (686)
++|+.-|++.+... +-...++..+..+|...+. +++|...|+++.+ ..|+..+|..-+....
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH----
Confidence 44555555555543 2235667777777765432 4556666666665 4899999988877653
Q ss_pred HHHHHHHHHHHHHCCC
Q 044251 603 FKRAFFYHKQMVKSGQ 618 (686)
Q Consensus 603 ~~~A~~~~~~m~~~g~ 618 (686)
.|-+++.++.+.+.
T Consensus 125 --kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 --KAPELHMEIHKQGL 138 (186)
T ss_dssp --THHHHHHHHHHSSS
T ss_pred --hhHHHHHHHHHHHh
Confidence 46777777776654
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.94 E-value=7.1 Score=30.78 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
++.+-++.+....+.|++.+..+.+++|.+.+++..|.++++-...+ ...+..+|..+++-+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 45556666666778899999999999999999999999999876633 123556777666655
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.92 E-value=3.6 Score=39.93 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=25.3
Q ss_pred hhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 216 GDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 216 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (686)
+++++.++..=.+.|.++|.++++.+|+.+.+.+++.+|..+.-.|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555544443
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.76 E-value=44 Score=34.08 Aligned_cols=65 Identities=6% Similarity=0.131 Sum_probs=37.2
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKP---SIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
...+|..++..+.+.|.++.|...+..+...+... .+.....-+..+-..|+...|+..++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666777777777777766665532111 223333344455556666666666666665
No 319
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.66 E-value=66 Score=35.89 Aligned_cols=49 Identities=12% Similarity=-0.035 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcc
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRA 213 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (686)
+......++..+.|.|.+++|+++.......-.. ....|...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~--~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQK--IERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-T--TTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHhC
Confidence 4455677899999999999999999444443221 125666667776554
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.65 E-value=2.9 Score=26.84 Aligned_cols=28 Identities=7% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 588 VTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 588 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
.+++.|..+|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888877764
No 321
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.39 E-value=5.3 Score=39.20 Aligned_cols=93 Identities=18% Similarity=0.047 Sum_probs=46.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKR 605 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 605 (686)
.|.++|.+++|+..|.+..... +.|+++|..-..+|.+..++..|+.-...++..+ ..-...|..-+.+-...|+..+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 4566666666666666654433 2266666666666666666655555444444321 0012233333333334455555
Q ss_pred HHHHHHHHHHCCCCCCH
Q 044251 606 AFFYHKQMVKSGQVPDV 622 (686)
Q Consensus 606 A~~~~~~m~~~g~~p~~ 622 (686)
|.+=++..++ ++|+.
T Consensus 184 AKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 184 AKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHhHHHHHh--hCccc
Confidence 5555555544 33544
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.31 E-value=81 Score=35.12 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=66.7
Q ss_pred HHHHccCChhHHHHHHHhcccCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 044251 208 PVLGRARMGDDLMVLFKNLPQSKEFR--DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR 285 (686)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 285 (686)
.-+.+.+.+++|+.+.+..... .+. ....+...|..+...|++++|-...-.|.. -+...|...+..+...++
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~-~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN-EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC-ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 3445678888999888876652 212 456788889999999999999998888874 355666666666666554
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 286 SAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
.. .++.-+.......++..|..++..|..
T Consensus 439 -l~---~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 -LT---DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred -cc---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 22 222222222233556677777776665
No 323
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.28 E-value=3.1 Score=25.41 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666777777777777777777776654
No 324
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.94 E-value=21 Score=37.06 Aligned_cols=105 Identities=13% Similarity=-0.006 Sum_probs=66.6
Q ss_pred HHHcCCHHHHHHHHHHHH---hCCCCCC-----HHHHHHHHHHHHhcCCccHHHHHHHHHHH-------CCCCCC-----
Q 044251 527 FAKQGQYLEARDVVSEFG---KIGLQPT-----LMTYNMLMNAYGRGGQTSKLPQLLKEMAT-------LNIKPD----- 586 (686)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~---~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~pd----- 586 (686)
+.-.|++.+|.+++...- ..|...+ -..||.|...+.+.|.+.-+..+|.++++ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 345688888888776532 1221112 23357777777777877777777777663 465552
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 587 -----SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 587 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
..+.....-.|...|++-.|.+.|.+.++. +.-++..|-.+.+.+
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 123333445678889999999999988865 456676666666555
No 325
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.88 E-value=3.6 Score=24.96 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEP 195 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~ 195 (686)
.+..+...+...|++++|++.|+.++...|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455666777777777777777777776655
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.77 E-value=2.4 Score=25.50 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPS 196 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~ 196 (686)
+...+...+.+.|++++|++.|+.+....|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455677777788888888888888877653
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.11 E-value=3.5 Score=26.41 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 235 AHVYNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
..+++.|...|...|++++|+.++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677788888888888888887777653
No 328
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.86 E-value=54 Score=32.02 Aligned_cols=64 Identities=9% Similarity=0.097 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 302 VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK-GIPSNAIVYNTLINAYCKSNQLEEAEGLFQ 365 (686)
Q Consensus 302 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (686)
..++..+...++..+++.+++..-.++++..... +...|...|..+|....+.|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555555555555555555555555554443 344455556666666666666555544444
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.83 E-value=11 Score=29.77 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 289 EAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEK 334 (686)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (686)
++.+-++.+...++.|++.+..+.+++|.+.+++..|.++++.+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555556666666666666666666666666666666553
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.79 E-value=11 Score=36.80 Aligned_cols=103 Identities=15% Similarity=-0.003 Sum_probs=70.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 044251 230 KEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN---NVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQ 306 (686)
Q Consensus 230 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~ 306 (686)
|.+..+.+...++..-....+++.+...+-+++.. ...|+. +-.+.++.|.+-. +++++-++..-++.|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky~--pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKYD--PQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHccC--hHHHHHHHhCcchhccccch
Confidence 44455556666666666677888888887777642 111221 2233444444432 67888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 307 EVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
.+++.+|+.+.+.+++.+|.++.-+|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888887777665
No 331
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.74 E-value=56 Score=32.18 Aligned_cols=172 Identities=9% Similarity=0.010 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTG---MMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
.++..++.+|...+..+ +|..+++.+.... +....++-.-+..+.+.++.+++.+++.+|...- .-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45667777787777655 4555666664432 3345556566677777899999999999988642 21334455555
Q ss_pred HHHHh--cCCccHHHHHHHHHHHCCCCCCHH-HH-HHHHH---HHHHcCC------HHHHHHHHHHHHHC-CCCCCHHHH
Q 044251 560 NAYGR--GGQTSKLPQLLKEMATLNIKPDSV-TY-STMIY---AFVRVRD------FKRAFFYHKQMVKS-GQVPDVKSY 625 (686)
Q Consensus 560 ~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~-~~-~~li~---~~~~~g~------~~~A~~~~~~m~~~-g~~p~~~~~ 625 (686)
..+.. ......|...+..+....+.|... .. ..++. ...+.++ .+...+++....+. +...+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 55422 223456777777777655666543 11 11221 1122222 34444445533333 445566666
Q ss_pred HHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHH
Q 044251 626 EKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYK 673 (686)
Q Consensus 626 ~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~ 673 (686)
..+..++ |...-..++ .++-.+|.+-|.-+.
T Consensus 243 ~a~~~LL-----------W~~~~~~~~------~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLL-----------WNKGKKHYK------AKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHH-----------HHHHHHHHh------hcCHHHHHHHHHHHH
Confidence 6666666 554444442 224456666665443
No 332
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.28 E-value=21 Score=28.53 Aligned_cols=79 Identities=10% Similarity=0.056 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHccCChh--HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGD--DLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT 278 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 278 (686)
..|..--..+......| ++++-++.+......|.+.+..+.+.++.+-+++..|.++|+.++..- .+....|..++.
T Consensus 9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 33444444444444444 567777777776777899999999999999999999999999887651 122226766665
Q ss_pred HH
Q 044251 279 AM 280 (686)
Q Consensus 279 ~~ 280 (686)
-+
T Consensus 88 El 89 (108)
T PF02284_consen 88 EL 89 (108)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.42 E-value=83 Score=33.26 Aligned_cols=177 Identities=13% Similarity=0.191 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhH
Q 044251 375 TSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALI 454 (686)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 454 (686)
|.....+++..+.....+.-++.+..+|...| -+...|..++..|...+. +.-..+++++.+..+. |++.-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~n--~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENGN--EQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCc--hhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 44455556666666666666666666666553 245566666666666533 4566666666665443 444344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 044251 455 HAYSVGGWHEKAYAAFENMLREEIKPSI------ETYTALLDAFRRSGDTGMMMKIWKLMMSE-KVEGTRVTFNILLDGF 527 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~ 527 (686)
..|-+ ++.+++..+|.+.... +-|.. ..|.-+... -..+.+....+...+... |..--...+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444 6666666666666554 22211 122222211 023444455544444433 2222333444444555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 561 (686)
....++++|++++..+++.. ..|..+-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 55666666666666665554 3344444444443
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.30 E-value=28 Score=27.85 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++++-...+ ..+...+|.-+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 45555666667788899999999999999999999999999887654 223333777777665
No 335
>PRK09687 putative lyase; Provisional
Probab=80.21 E-value=64 Score=31.83 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=9.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFG 544 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~ 544 (686)
.+.++...|.. +|...+..+.
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHH
Confidence 34444444442 3444444444
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.02 E-value=26 Score=32.10 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 288 KEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK---GIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
+.|++.|-++...+.--++.....|...|. ..+.+++.+++-...+. +-.+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433323333333333332 33344444444443332 1133444444444444444444444
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.24 E-value=6.7 Score=38.56 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=51.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 044251 455 HAYSVGGWHEKAYAAFENMLREEIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQY 533 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 533 (686)
+-|.+.|.+++|+++|..... ..| +.+++..-..+|.+...+..|+.--...+..+ ..-...|+.-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 346677777777777776665 344 66677777777777777766666555555433 22233344444444444555
Q ss_pred HHHHHHHHHHHhC
Q 044251 534 LEARDVVSEFGKI 546 (686)
Q Consensus 534 ~~A~~~~~~~~~~ 546 (686)
.+|.+-++..+.+
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 5665555555543
No 338
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.18 E-value=75 Score=35.15 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=7.2
Q ss_pred cCCHHHHHHHHHHH
Q 044251 354 SNQLEEAEGLFQEM 367 (686)
Q Consensus 354 ~g~~~~A~~~~~~m 367 (686)
.|++..+++....+
T Consensus 310 ~~d~~~vL~~~~~~ 323 (566)
T PF07575_consen 310 EGDIESVLKEISSL 323 (566)
T ss_dssp TS--GGGHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 56666666665544
No 339
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=78.98 E-value=1.1e+02 Score=33.91 Aligned_cols=35 Identities=23% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 598 VRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 598 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
.+.|++.+|.+.+-.+++..+.|..--...+.+.+
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp -----------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 34588888888888888777777765555555544
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.40 E-value=6.2 Score=23.92 Aligned_cols=28 Identities=14% Similarity=0.365 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 588 VTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 588 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
.+|..+...|...|++++|...|++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567778888888888888888888776
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.88 E-value=22 Score=32.62 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 430 MAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE---EIKPSIETYTALLDAFRRSGDTGM 500 (686)
Q Consensus 430 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~ 500 (686)
.|...|-.+...+.--+......|...|. ..+.++++.++...++. +-.+|+..+..|+..+.+.|+++.
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444444444433323333333333332 33444444444444332 112334444444444444444433
No 342
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.59 E-value=2.2e+02 Score=36.51 Aligned_cols=152 Identities=11% Similarity=0.010 Sum_probs=93.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHh-cccCCCCCCHHHHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSP-RACSVLFPVLGRARMGDDLMVLFKN-LPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~li~~~~ 246 (686)
.+..+=.+.+.|.+|+-+++.-.......... ..+..+-..|+.-+++|....+... ... ++ .+ .-|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~s--l~-~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----PS--LY-QQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----cc--HH-HHHHHHH
Confidence 44455567788999999998852222111222 3344444489999999988777764 222 22 22 3455677
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHH
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVG-ALMKSFCDEGLKNEA 325 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A 325 (686)
..|+++.|...|+.+...+ ++...+++.++......+. ++...-..+-.... ..+....++ .-+.+--+.++++..
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~-l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQH-LSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccc-hhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 8899999999999999874 3336778877777766666 66665544444333 222222333 233444667777766
Q ss_pred HHHHH
Q 044251 326 LIIQM 330 (686)
Q Consensus 326 ~~~~~ 330 (686)
...+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66554
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.56 E-value=73 Score=31.05 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 555 YNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQM 613 (686)
Q Consensus 555 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 613 (686)
++.....|..+|.+.+|.++-++.+..+ +.+...+-.|+..+...|+--.|...++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344455566666666666666655432 224555555566666666654444444443
No 344
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.23 E-value=16 Score=25.30 Aligned_cols=42 Identities=12% Similarity=0.332 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDV 634 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a 634 (686)
-.+.-++.+.|++++|.++.+.+++ +.|+..-...|....+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHH
Confidence 3455678899999999999999987 56888877777766643
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.43 E-value=6 Score=26.17 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 592 TMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 592 ~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
.|..+|...|+.+.|.+++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46678888888888888888887544
No 346
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.98 E-value=5.1 Score=23.99 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 239 NAAISGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
-.+..++.+.|++++|.+.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566677777777777777777654
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.65 E-value=70 Score=31.02 Aligned_cols=88 Identities=9% Similarity=0.081 Sum_probs=51.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH-----HH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY-----AF 597 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~-----~~ 597 (686)
-|.+++..|++.++....-+.-..--+.-+.+...-|-.|.+.|.+..+.++-.......-.-+..-|..++. ++
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 4677777788877776544433211122345555566677788888877777777664311112233554444 44
Q ss_pred HHcCCHHHHHHHH
Q 044251 598 VRVRDFKRAFFYH 610 (686)
Q Consensus 598 ~~~g~~~~A~~~~ 610 (686)
.-.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 4568888887776
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.04 E-value=4.6 Score=23.02 Aligned_cols=22 Identities=14% Similarity=-0.029 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHK 611 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~ 611 (686)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455566666666666666654
No 349
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.72 E-value=44 Score=26.67 Aligned_cols=86 Identities=14% Similarity=0.056 Sum_probs=55.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 179 LLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAY 258 (686)
Q Consensus 179 ~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 258 (686)
..++|..+-+|+...+.. ...+--+-+..+..+|++++|..+.+.+.- ||...|-+|.. .+.|-.+++..-+
T Consensus 20 cHqEA~tIAdwL~~~~~~--~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~----pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES--EEAVQLIRLSSLMNRGDYQSALQLGNKLCY----PDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHccchHHHHHHhcCCCCC----chHHHHHHHHH--HhhccHHHHHHHH
Confidence 457788888887765422 112222234457788999999888887753 88888877654 4566666666667
Q ss_pred HHHHhCCCCCCHHHH
Q 044251 259 EAMEANNVRPDHVTC 273 (686)
Q Consensus 259 ~~m~~~g~~p~~~~~ 273 (686)
.+|...| .|...+|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 7776665 4544444
No 350
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.46 E-value=2.7e+02 Score=35.69 Aligned_cols=63 Identities=6% Similarity=-0.079 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 552 LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 552 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
..+|-........+|+++.|...+-.+.+.+ . +..+.-.+.-++..|+...|+.++++.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 5678888888888999999999888877754 3 3456677788899999999999999998654
No 351
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.28 E-value=24 Score=37.78 Aligned_cols=102 Identities=12% Similarity=-0.060 Sum_probs=70.5
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHH
Q 044251 173 LMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYD 252 (686)
Q Consensus 173 ~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (686)
...+.|+++.|.++..... +..-|..|..+....|++..|.+.|.+... |..|+.++...|+.+
T Consensus 646 lal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 3344555555555444332 346789999999999999999999988765 778888899999888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 044251 253 DAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKM 297 (686)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m 297 (686)
....+-....+.| .- |...-++...|+ ++++++++..-
T Consensus 710 ~l~~la~~~~~~g-~~-----N~AF~~~~l~g~-~~~C~~lLi~t 747 (794)
T KOG0276|consen 710 GLAVLASLAKKQG-KN-----NLAFLAYFLSGD-YEECLELLIST 747 (794)
T ss_pred HHHHHHHHHHhhc-cc-----chHHHHHHHcCC-HHHHHHHHHhc
Confidence 7666666666665 22 333445556777 78777776543
No 352
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.08 E-value=0.99 Score=39.34 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=46.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 044251 524 LDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDF 603 (686)
Q Consensus 524 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 603 (686)
+..+.+.+.+.....+++.+...+...+....+.|+..|++.++.++..++++... + .-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcchH
Confidence 44445555666666666666654444456666777777777766666666666211 1 1223445555666666
Q ss_pred HHHHHHHHHH
Q 044251 604 KRAFFYHKQM 613 (686)
Q Consensus 604 ~~A~~~~~~m 613 (686)
++|..++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 6666665543
No 353
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.95 E-value=41 Score=35.95 Aligned_cols=152 Identities=13% Similarity=0.011 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044251 409 PNAKSYTCLISAYGRPR-KMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTA 487 (686)
Q Consensus 409 p~~~~~~~ll~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 487 (686)
|+..+..+++.-....- .-.+.+-.++-.|.. -..|-....|...-.+.-.|+...|...+............+....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 44455444444333221 111334444444432 2222233333333334456888889888887765433223344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 488 LLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYG 563 (686)
Q Consensus 488 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 563 (686)
|.+...+.|-...|-.++.+.+... .....++..+.++|....+++.|++.|+++.+.. +.+.+.-+.|...-|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 6666777777788888888877665 4455677788888888999999999999988776 346666666654433
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.94 E-value=5.1 Score=22.84 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=7.0
Q ss_pred HHHHHHHcCCHHHHHHH
Q 044251 241 AISGLFWCGRYDDAWKA 257 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~ 257 (686)
+...+...|++++|..+
T Consensus 7 la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 7 LARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 33344444444444433
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.18 E-value=24 Score=32.72 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 044251 311 ALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG--LKPTSATFNILMDA 385 (686)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~ 385 (686)
..+..+.+.+.+.+++...+.-++.. +.|......|++.||-.|+|++|..-++-.-... ..+-..+|..+|.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455556666777776666655553 3356666667777777777777766655544331 22233455555544
No 356
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.10 E-value=1e+02 Score=30.13 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=26.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 488 LLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSE 542 (686)
Q Consensus 488 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 542 (686)
....|...|.+.+|.++.+..+..+ +.+...+-.|+..+...|+--.|..-+++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3344455555555555555555444 44444455555555555554444443333
No 357
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.25 E-value=1.4e+02 Score=31.31 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=49.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
.+...|+++.+...+...... +.....+...+++...+.|+ +++|..+-+-|+...+. ++++........-..|-++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r-~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR-WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh-HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 344556777776666554332 12333455666666666666 67777776666665544 4444433333334455666
Q ss_pred HHHHHHHHHHHC
Q 044251 324 EALIIQMEMEKK 335 (686)
Q Consensus 324 ~A~~~~~~~~~~ 335 (686)
++...++.+...
T Consensus 409 ~~~~~wk~~~~~ 420 (831)
T PRK15180 409 KSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHhcc
Confidence 666666665544
No 358
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.91 E-value=1.9e+02 Score=32.88 Aligned_cols=180 Identities=10% Similarity=0.079 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
.+.+.+=+.|.+.|+|+.|+++-+.- |... ..++..-+..|.+.+.+..|.++|.++.. .+..+.-=
T Consensus 359 dE~R~vWk~yLd~g~y~kAL~~ar~~----p~~l-e~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLK 425 (911)
T KOG2034|consen 359 DEARDVWKTYLDKGEFDKALEIARTR----PDAL-ETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALK 425 (911)
T ss_pred cchHHHHHHHHhcchHHHHHHhccCC----HHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHH
Confidence 55667788899999999998865433 1100 12333344567778888899988887743 35566666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHH-cCC---CHHHHHHHHHHHHH--------C-CCCCCH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSI-----MITAMRK-NGR---SAKEAWEFFEKMNR--------K-GVKLSQ 306 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----ll~~~~~-~g~---~~~~a~~~~~~m~~--------~-~~~~~~ 306 (686)
+....+.+ ++..|-.=+-..+.|...+-.. ++..+.. .+. ..+++.+-++.-.+ . ...-+.
T Consensus 426 Fl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~ 504 (911)
T KOG2034|consen 426 FLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDE 504 (911)
T ss_pred HHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 66777766 4443322222223333222111 1111111 111 01222222221110 0 011122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 307 EVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (686)
..+.+....+...|+.++...+-.-+. -|..++.-+++.+.+++|++++..-
T Consensus 505 ~nretv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 505 LNRETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred hhHHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223344455566677777665544433 2566788888999999999887654
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.90 E-value=9.6 Score=25.24 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=18.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 241 AISGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 567777888888888888877754
No 360
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.52 E-value=53 Score=26.24 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=30.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044251 349 NAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMG 406 (686)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 406 (686)
..+...|+|++|..+.+.+ +.||...|-.|.. .+.|..+.+...+..|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455667777777666544 4567666655543 25566665666665555544
No 361
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.13 E-value=28 Score=27.40 Aligned_cols=53 Identities=9% Similarity=-0.051 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCC
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARM 215 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (686)
+.+....+...+...|++++|++.+-.+.+..+...+...-..++.++.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 55666677777777777777777777777776555444455555555444444
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.91 E-value=1.9e+02 Score=32.35 Aligned_cols=198 Identities=11% Similarity=0.029 Sum_probs=91.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCCCHHHHH
Q 044251 458 SVGGWHEKAYAAFENMLREEI-KPS-------IETYTALLDAFRRSGDTGMMMKIWK--------LMMSEKVEGTRVTFN 521 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~-~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 521 (686)
+-.+++..|...++.|..... .|+ ...+....-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 446788888888888875411 111 2233333334456789999999997 444444444444333
Q ss_pred HH--HHHHH--HcCCHHH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHHhcC--CccHHHHHHHHHHHC---CCCCC
Q 044251 522 IL--LDGFA--KQGQYLE--ARDVVSEFGKI-GLQP--TLMTYNML-MNAYGRGG--QTSKLPQLLKEMATL---NIKPD 586 (686)
Q Consensus 522 ~l--i~~~~--~~g~~~~--A~~~~~~~~~~-~~~p--~~~~~~~l-i~~~~~~g--~~~~A~~l~~~m~~~---g~~pd 586 (686)
.| +-.+. ......+ +.++++.+... .-.| +..+++.+ +.++...- ...++...+.+..+. ....+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 31 11122 2222233 66666655431 1122 33334443 33333222 123444444333221 11111
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcc
Q 044251 587 ---SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQ-VPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKK 662 (686)
Q Consensus 587 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (686)
..+++.+...+. .|+..+.........+... .|| ....-|..+.+.+.....-..|..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d-----------------~~~~LW~~v~~~~l~~~~~~~G~~ 593 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSD-----------------YSDQLWHLVASGMLADSYEVQGDR 593 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhh-----------------hhhHHHHHHHHHHHHHHHHHcCcH
Confidence 122333333333 5777665555444332110 011 112336666666655544466677
Q ss_pred cchhHHHHHHH
Q 044251 663 KGKKDEFWKYK 673 (686)
Q Consensus 663 ~~a~~~f~~~~ 673 (686)
++|.....+..
T Consensus 594 ~ka~~~~~~~~ 604 (608)
T PF10345_consen 594 DKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHH
Confidence 77777666554
No 363
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.49 E-value=1.3e+02 Score=30.34 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 044251 463 HEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK---QGQYLEARDV 539 (686)
Q Consensus 463 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~ 539 (686)
.+.-+.+|++.++. .+.+......++..+.+..+.+...+.|+.++... +.+...|...++.... .-.++....+
T Consensus 47 ~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 35667777777776 33566777778888888888888888888888765 5567777777766554 2245555555
Q ss_pred HHHHHh------CCC----CCCHH-------HHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 540 VSEFGK------IGL----QPTLM-------TYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 540 ~~~~~~------~~~----~p~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
|.+.+. .+. .+-.. ++..+...+...|..+.|+.+++-+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 555321 010 00111 122222233466777777777777776554
No 364
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=69.24 E-value=14 Score=22.27 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777777778888888887777654
No 365
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=69.23 E-value=1.2e+02 Score=29.74 Aligned_cols=65 Identities=9% Similarity=0.224 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 478 IKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE-KVEGTRVTFNILLDGFAKQGQYLEARDVVSE 542 (686)
Q Consensus 478 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 542 (686)
..++..+...++..++..+++....++|...... +...|...|..+|+.....|+..-...++++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3455666666667777777777777777666654 4455666677777776777766555555544
No 366
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.51 E-value=16 Score=38.80 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044251 479 KPSIETYTALLDAFRRS--GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYN 556 (686)
Q Consensus 479 ~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 556 (686)
.|+..+..+++.-.... ...+.+-.++-.|. ..+.|--..+|...-.+...|+...|...+..+......-.-+...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 35555555554433221 22334444444443 3334444444443333445899999999998876543333444566
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 557 MLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
.|...+.+.|...+|..++.+.+... ...+.++..+.+++....+++.|++.|+++++..
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 67788888888899999999988764 4567888999999999999999999999999864
No 367
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.67 E-value=89 Score=29.36 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCc-------cHHHHHHHHHHHCCCCC----CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044251 554 TYNMLMNAYGRGGQT-------SKLPQLLKEMATLNIKP----DS-VTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD 621 (686)
Q Consensus 554 ~~~~li~~~~~~g~~-------~~A~~l~~~m~~~g~~p----d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 621 (686)
.+--+.+.|...|+. ..|.+.|.+..+..-.| +. ...-.++....+.|++++|.++|.+++..+-.+.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 444456666666663 34666666666543222 33 3334455677899999999999999998754333
No 368
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.82 E-value=2.5e+02 Score=32.12 Aligned_cols=177 Identities=12% Similarity=0.055 Sum_probs=100.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAW 255 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (686)
-+.+|++.+.+.+...-- =..++..+.+.|-++-|+...+.-.. - ......+|+.+.|+
T Consensus 605 i~k~ydeVl~lI~ns~Lv---------GqaiIaYLqKkgypeiAL~FVkD~~t---------R---F~LaLe~gnle~al 663 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNLV---------GQAIIAYLQKKGYPEIALHFVKDERT---------R---FELALECGNLEVAL 663 (1202)
T ss_pred HhhhhHHHHHHHHhcCcc---------cHHHHHHHHhcCCcceeeeeecCcch---------h---eeeehhcCCHHHHH
Confidence 355677776665554321 13445556677777777665543221 1 23456778888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 256 KAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 256 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
+.-..+ -|..+|..|.......|+ .+-|...|++.... ..|--.|.-.|+.++-.++......+
T Consensus 664 e~akkl------dd~d~w~rLge~Al~qgn-~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~iae~r 727 (1202)
T KOG0292|consen 664 EAAKKL------DDKDVWERLGEEALRQGN-HQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMKIAEIR 727 (1202)
T ss_pred HHHHhc------CcHHHHHHHHHHHHHhcc-hHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHHHHHhh
Confidence 765553 355678889888888888 78888777766543 22333445567777766666555443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 336 GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 336 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
+ |.... +. ...-.|++++=.++++.. |.. +. .|. .....|.-+.|.++.++...
T Consensus 728 ~---D~~~~--~q-nalYl~dv~ervkIl~n~---g~~-~l-ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 728 N---DATGQ--FQ-NALYLGDVKERVKILENG---GQL-PL-AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred h---hhHHH--HH-HHHHhccHHHHHHHHHhc---Ccc-cH-HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 1 22221 11 112346777766666533 222 21 121 12345777788888877765
No 369
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=64.22 E-value=1.3e+02 Score=28.40 Aligned_cols=137 Identities=18% Similarity=0.281 Sum_probs=77.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 044251 454 IHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQY 533 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 533 (686)
+..|.+.-++.-|.....++.+ ...+-++++ -|.+..+.+-..++.+-....+++-+..-+.+++ +...|++
T Consensus 137 MEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIE-----PIQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHcccchhhhhhcchhhhhh-----hHHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Confidence 3344455555555444444433 112222222 3455555555555555555556666665565555 4567888
Q ss_pred HHHHHHHHHHHh-CC-----------CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 044251 534 LEARDVVSEFGK-IG-----------LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRV 600 (686)
Q Consensus 534 ~~A~~~~~~~~~-~~-----------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 600 (686)
..|+..++.-.. .| -.|.+.....++..|. .+++++|.+++.++.+.|+.|.. +.+.+.+++-..
T Consensus 209 RQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~~ 285 (333)
T KOG0991|consen 209 RQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVVKNM 285 (333)
T ss_pred HHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhc
Confidence 888877765321 11 2566666667776654 45688899999888888887643 344555554433
No 370
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.21 E-value=51 Score=27.59 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
|..+-+..+...++.|++.+...-+++|.+.+|+..|.++|+-...+ ..+...+|..+++-+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Confidence 34455666667788899999999999999999999999999877654 223344566666555
No 371
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=64.03 E-value=1.4 Score=38.40 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 312 LMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ 391 (686)
Q Consensus 312 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (686)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +......++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34455556666666667777766555556777777777777776666666666511 11223345666666666
Q ss_pred HHHHHHHHHHH
Q 044251 392 PEIVEKLLLEL 402 (686)
Q Consensus 392 ~~~a~~~~~~m 402 (686)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666554
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.08 E-value=1.8e+02 Score=28.91 Aligned_cols=53 Identities=8% Similarity=0.112 Sum_probs=26.6
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 558 LMNAYGRGGQTSKLPQLLKEMATLNIKPD---SVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 558 li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
|..+-.+.|+..+|.+.++.+.+. .|= ..+...|+.+|....-+.....++.+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444566666666666665542 221 12334556666555555554444433
No 373
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.88 E-value=1.8e+02 Score=28.76 Aligned_cols=83 Identities=14% Similarity=-0.076 Sum_probs=41.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH----
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGR----ARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW---- 247 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 247 (686)
..+.+..|...++.+.... ++.....+...|.. ..+...|...|......+ .......|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCc
Confidence 3445556666666655421 11333334443332 234556666666555432 23333344444444
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 044251 248 CGRYDDAWKAYEAMEANN 265 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g 265 (686)
..+..+|...|+...+.|
T Consensus 126 ~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 126 PLDLVKALKYYEKAAKLG 143 (292)
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 336666666666666655
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.84 E-value=3.3e+02 Score=31.59 Aligned_cols=117 Identities=9% Similarity=0.061 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCC-HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCCCHHHHHH-
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEANN--VRPD-HVTCSIMITAMRKNGRS-AKEAWEFFEKMNRKGVKLSQEVVGA- 311 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~-~~~~~~ll~~~~~~g~~-~~~a~~~~~~m~~~~~~~~~~~~~~- 311 (686)
-|..|+..|...|+.++|+++|.+..... ..+. ...+-..+.-+.+.+.. .+..+++-...+.....-...++..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48899999999999999999999987631 0111 11222334433333331 2445555554444321111111111
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 044251 312 -----------LMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK 353 (686)
Q Consensus 312 -----------li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 353 (686)
.+-.|+.....+-+...++.+....-..+....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122334444555555666665555444455555555555544
No 375
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=59.28 E-value=1.9e+02 Score=28.70 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 287 AKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQE 366 (686)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (686)
..+|..+|++.++.+- .+|+ --..+...| ...+.+.+++...-+..-..|.-+..+.|+..+|.+.|++
T Consensus 232 i~~AE~l~k~ALka~e----~~yr-~sqq~qh~~------~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKAGE----TIYR-QSQQCQHQS------PQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHHHH----HHHh-hHHHHhhhc------cchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6778888888876541 1221 011122222 2233334443322233334566667778999999999988
Q ss_pred HHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 367 MKTKGLKPTS-ATFNILMDAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 367 m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
+.+.-.-.+. .....|+.++....-+.++..++.+..+.
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7654211111 12234666666665555555555555433
No 376
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.00 E-value=2.4e+02 Score=29.79 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=23.4
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFV 598 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 598 (686)
.-.|...|++-.|.+.|.+...- +..++..|..|..+|.
T Consensus 342 G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 342 GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 33455666666666666666542 3446666666666664
No 377
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.81 E-value=1.7e+02 Score=27.79 Aligned_cols=27 Identities=7% Similarity=0.006 Sum_probs=18.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQDMGLE 408 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~~~~~ 408 (686)
+....+..+++.+|+++|+++....+.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333445677888888888888765443
No 378
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.21 E-value=32 Score=23.85 Aligned_cols=33 Identities=12% Similarity=-0.152 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLV 198 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~ 198 (686)
-+..++-.+.+.|++.+|++..+.+++.+|...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 345667778889999999999999999888764
No 379
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=58.17 E-value=1.5e+02 Score=28.54 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=41.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh-cCCccHHHHHHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKI-G-LQPTLMTYNMLMNAYGR-GGQTSKLPQLLKEMAT 580 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~-~-~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~ 580 (686)
++.....+++++++...++++.+. + ...+..--|.|-.+|-. .|....+++++..+..
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ 67 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 67 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHH
Confidence 455666788899988888888765 3 36677777777777753 4666777887776654
No 380
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.44 E-value=1.9e+02 Score=28.15 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (686)
.......+.+.-..||..|++..++-.
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCergl 62 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGL 62 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556667777776666543
No 381
>PRK13342 recombination factor protein RarA; Reviewed
Probab=57.23 E-value=2.6e+02 Score=29.48 Aligned_cols=47 Identities=21% Similarity=0.140 Sum_probs=31.1
Q ss_pred HhhhHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 450 YTALIHAYSV---GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 450 ~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
+..++.++.+ .++.+.|+..+..|.+.|..|....-..++.++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3344445544 4788889999999998887777665555555554444
No 382
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=56.23 E-value=62 Score=30.93 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCccHHHHHHHHHH
Q 044251 522 ILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR-GGQTSKLPQLLKEMA 579 (686)
Q Consensus 522 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~ 579 (686)
.++..+..+|+++++..+++++...+...+..--|.|..+|-. .|....+++++....
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3455666777777777777777776666666666666666642 333344444444443
No 383
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.55 E-value=1.9e+02 Score=27.50 Aligned_cols=119 Identities=12% Similarity=0.035 Sum_probs=73.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcCCH
Q 044251 456 AYSVGGWHEKAYAAFENMLREEIKPSI-ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTR-VTFNILLDGFAKQGQY 533 (686)
Q Consensus 456 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 533 (686)
-|....++..|+..|.+.+. +.|+. .-|+.-+.++.+..+++.+..--...++. .|+. .....+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 36666778888888877776 56766 44555666677788888877766666654 3443 3344455555667788
Q ss_pred HHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 044251 534 LEARDVVSEFGKI----GLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 534 ~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 578 (686)
++|+..+++..++ .+.+-...+..|..+--..=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888887432 23344455555555543333444455554444
No 384
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=55.19 E-value=4.1e+02 Score=31.28 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHH----HHHHH---ccC---ChhHHHHHHHhcccCCCCCCH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVL----FPVLG---RAR---MGDDLMVLFKNLPQSKEFRDA 235 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l----~~~~~---~~g---~~~~A~~~~~~~~~~~~~~~~ 235 (686)
.|..+=.++.....|++|+..|+++...-|... +.|..+ +..+. ..| .+++|+.-|+.+...- .-+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 552 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPGRK--EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGV--GAP 552 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcc--cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCC--CCc
Confidence 355667788888999999999999998866543 333322 22222 233 3567888888776521 233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
--|-.-..+|-+.|++++-.+.+.-..++
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34555566778888888877777666544
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.72 E-value=35 Score=25.89 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=25.5
Q ss_pred hcCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 044251 564 RGGQTSKLPQLLKEMATLNIKPD--SVTYSTMIYAFVRVRDFKRAFFY 609 (686)
Q Consensus 564 ~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~ 609 (686)
...+.++|+..|+..++.-..+. -.++..|+.+++..|++.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666665422221 23455566666666666665554
No 386
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=54.52 E-value=23 Score=20.02 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+|..+...+...|+++.|...+++.++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 5667777888889999999888887753
No 387
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.27 E-value=1.9e+02 Score=27.45 Aligned_cols=112 Identities=18% Similarity=0.080 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHcCCCCCh-hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 044251 428 SDMAADAFLRMKRVGIKPTS-HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIE-TYTALLDAFRRSGDTGMMMKIW 505 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~ 505 (686)
.+.|+..|.+.... .|+. .-|+.=+.++.+..+++.+..--...++ +.|+.. ....+..+......++.|+..+
T Consensus 26 y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 26 YDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 36788877666655 4565 4466677788889999988877777766 566664 3444556667788899999998
Q ss_pred HHHHhc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 506 KLMMSE----KVEGTRVTFNILLDGFAKQGQYLEARDVVSEF 543 (686)
Q Consensus 506 ~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 543 (686)
.+.... .+++-....+.|..+=-+.=...+..++.++.
T Consensus 102 qra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 102 QRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 887543 44455556666666544444555666666643
No 388
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.34 E-value=2.1e+02 Score=27.20 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=19.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044251 597 FVRVRDFKRAFFYHKQMVKSGQVPDVKSYE 626 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 626 (686)
-...+++.+|+.+|++..+..+..+..-|.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 356677888888888877665444444343
No 389
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=53.28 E-value=4.2e+02 Score=30.74 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhhhh
Q 044251 586 DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS-GQVPDVKSYEKLRSILDVKVA 637 (686)
Q Consensus 586 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~l~a~~~ 637 (686)
|..++..-.+-....|++-.|++++.++++. |-.++...|..+.+++.+.+|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 5566666666677889999999999999875 566778888888888866553
No 390
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.22 E-value=2.1e+02 Score=30.04 Aligned_cols=15 Identities=20% Similarity=0.135 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHCCCC
Q 044251 570 KLPQLLKEMATLNIK 584 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~ 584 (686)
+..+-++.|....+.
T Consensus 298 ~C~~ei~~mk~~~i~ 312 (413)
T PHA02875 298 KCIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHHhhccC
Confidence 455666777764443
No 391
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=52.85 E-value=2.6e+02 Score=28.23 Aligned_cols=123 Identities=7% Similarity=-0.002 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCccHHHHH
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG---GQTSKLPQL 574 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l 574 (686)
.+.-+.+++++++.+ +.+...+-.++..+.+..+.++..+.|+++.... +-+...|...+...... -.+++...+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 355677888888875 6788889999999999999999999999998765 33788888888776542 245566666
Q ss_pred HHHHHHC------CC------CC--CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH
Q 044251 575 LKEMATL------NI------KP--DSV---TYSTMIYAFVRVRDFKRAFFYHKQMVKSGQ-VPDV 622 (686)
Q Consensus 575 ~~~m~~~------g~------~p--d~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~ 622 (686)
|.+.... +. .+ +.. ++..+..-+...|-.+.|..+++-+++.++ .|+.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 5554421 21 11 112 222333344678999999999999999865 4544
No 392
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.61 E-value=2.5e+02 Score=28.01 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 044251 235 AHVYNAAISGLFWCGRYDDAWKAYEAMEA----NNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVK 303 (686)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~ 303 (686)
..++-.....|++.|+-+.|++.+.+.-+ .|..-|+.-+..-+..+....+-..+-++....+.+.|..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 45666677778888888888777666433 3555666555554444433322233444444444455543
No 393
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.87 E-value=2.4e+02 Score=29.58 Aligned_cols=77 Identities=18% Similarity=0.071 Sum_probs=38.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcC
Q 044251 315 SFCDEGLKNEALIIQMEMEKKGIPSNAIV--YNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA--TFNILMDAYSRRM 390 (686)
Q Consensus 315 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~ 390 (686)
..+..|..+-+.. +.+.|..++... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 3345566654443 344566655432 2344555556677653 34444555544432 1122344455667
Q ss_pred CHHHHHHHH
Q 044251 391 QPEIVEKLL 399 (686)
Q Consensus 391 ~~~~a~~~~ 399 (686)
+.+.+..++
T Consensus 80 ~~~~v~~Ll 88 (413)
T PHA02875 80 DVKAVEELL 88 (413)
T ss_pred CHHHHHHHH
Confidence 766654444
No 394
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.59 E-value=79 Score=28.54 Aligned_cols=67 Identities=6% Similarity=0.168 Sum_probs=41.3
Q ss_pred hhHHHHHHHhcccCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 044251 216 GDDLMVLFKNLPQSKEFRD-------AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR 285 (686)
Q Consensus 216 ~~~A~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 285 (686)
++.|+.+|+.+......+. ..+-...+..|.+.|.+++|.++++..-. .|+.......+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 3467888877765322221 11233456678888888888888888876 4565555555555555544
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.48 E-value=61 Score=21.89 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=16.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 598 VRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLR 629 (686)
Q Consensus 598 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 629 (686)
.+.|-..++..++++|.+.|+.-+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554443
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.48 E-value=71 Score=25.22 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=15.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 593 MIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 593 li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+.......|++++|...++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444556667777777777776654
No 397
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.33 E-value=8.2e+02 Score=33.31 Aligned_cols=39 Identities=13% Similarity=-0.005 Sum_probs=25.0
Q ss_pred hhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCC
Q 044251 637 ATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHP 677 (686)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p 677 (686)
..-....|..++-.+.... .+..++.+.-+.-|+-+.+|
T Consensus 2918 ~~ip~~~wl~~IPQLl~sL--s~~e~~~~~~iL~kia~~yP 2956 (3550)
T KOG0889|consen 2918 GEIPVWNWLYFIPQLLTSL--SKKEAKLVRLILIKIAKSYP 2956 (3550)
T ss_pred ccCCchhhhhhhHHHHhhc--cccchhHHHHHHHHHHHhch
Confidence 3444566777766665433 45556667777778877777
No 398
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=49.31 E-value=3.6e+02 Score=28.78 Aligned_cols=414 Identities=10% Similarity=0.067 Sum_probs=195.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 044251 182 CCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG-RYDDAWKAYEA 260 (686)
Q Consensus 182 ~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~ 260 (686)
.-+.+|+.+...-+ .++..|..-+..+-+.+.+.+.-.+|..|.... +.++..|-....-...-+ +++.|..+|..
T Consensus 89 rIv~lyr~at~rf~--~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNRFN--GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 44556777766543 356888888888888888999999999988743 366666665555444444 48899999888
Q ss_pred HHhCCCCCCH-HHHHHHHHHHH---H--------cCCCH-HHHHHHHHHHHH-CCCCCCHHH--HHH-HH--HHHHhcCC
Q 044251 261 MEANNVRPDH-VTCSIMITAMR---K--------NGRSA-KEAWEFFEKMNR-KGVKLSQEV--VGA-LM--KSFCDEGL 321 (686)
Q Consensus 261 m~~~g~~p~~-~~~~~ll~~~~---~--------~g~~~-~~a~~~~~~m~~-~~~~~~~~~--~~~-li--~~~~~~g~ 321 (686)
-... .|+. ..|-..++.-. . .|... +.-.++-+.-.. ....++... +.. .+ ...-....
T Consensus 166 gLR~--npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~ 243 (568)
T KOG2396|consen 166 GLRF--NPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDF 243 (568)
T ss_pred Hhhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHH
Confidence 7765 4543 33332222111 0 00000 000000000000 000011000 000 00 00000011
Q ss_pred HHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHH----H---------------cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 322 KNEA-LIIQMEMEKKGIPSNAIVYNTLINAYC----K---------------SNQLEEAEGLFQEMKTKGLKPTSATFNI 381 (686)
Q Consensus 322 ~~~A-~~~~~~~~~~g~~~~~~~~~~li~~~~----~---------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 381 (686)
..+- ..+.+.+... .+-++.+|..+..-.. + .-+-+....+|++..+. -|+...|+.
T Consensus 244 ~kel~k~i~d~~~~~-~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~ 320 (568)
T KOG2396|consen 244 LKELQKNIIDDLQSK-APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWEC 320 (568)
T ss_pred HHHHHHHHHHHHhcc-CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHH
Confidence 1111 1222223222 2334444443332211 1 01223445666666553 346666776
Q ss_pred HHHHHHhcC------CHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhh
Q 044251 382 LMDAYSRRM------QPEIVEKLLLELQDMG-LEP-NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTAL 453 (686)
Q Consensus 382 ll~~~~~~~------~~~~a~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 453 (686)
.|..|.... .......+++...+.+ ..+ ....|..+.-.++......+.|..+. ..++.-+...|..-
T Consensus 321 YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~----~e~f~~s~k~~~~k 396 (568)
T KOG2396|consen 321 YITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLT----TELFRDSGKMWQLK 396 (568)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhh----HHHhcchHHHHHHH
Confidence 777665432 2333444444444332 222 34556665555555433323333333 22233355555554
Q ss_pred HHHHHhcC-CHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 454 IHAYSVGG-WHE-KAYAAFENMLREEIKPSIETYTALLDAFRRSGD---TGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 454 i~~~~~~g-~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
+....... +++ .-..++......-..+-...|+... .++ ...-..++......+.+.....-+.+++.+.
T Consensus 397 l~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~ 471 (568)
T KOG2396|consen 397 LQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAY 471 (568)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHH
Confidence 44444221 111 1111222222211122222233222 122 1111223333333332223333456777777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR--GGQTSKLPQLLKEMATL-NIKPDSVTYSTMIYAFVRVRDFKR 605 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~ 605 (686)
..|-..+|..++..+.... +|....|..+|..-.. .-++..+.++++.|... | .|+..|...+.-=...|..+.
T Consensus 472 e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en 548 (568)
T KOG2396|consen 472 ESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPEN 548 (568)
T ss_pred HhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCccc
Confidence 7888888888888877664 6677777777754321 22366677777777643 4 566677666665557777777
Q ss_pred HHHHHHHHHH
Q 044251 606 AFFYHKQMVK 615 (686)
Q Consensus 606 A~~~~~~m~~ 615 (686)
+-.++.++++
T Consensus 549 ~~~~~~ra~k 558 (568)
T KOG2396|consen 549 CGQIYWRAMK 558 (568)
T ss_pred ccHHHHHHHH
Confidence 7666666654
No 399
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.28 E-value=4.3e+02 Score=29.75 Aligned_cols=316 Identities=11% Similarity=0.022 Sum_probs=169.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc--cCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGR--ARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
.-+....+.|++.++.++...+. ..| . ..|..-...... ....++....+++-+. .+.....-...+..+.
T Consensus 38 ~~A~~a~~~g~~~~~~~~~~~l~-d~p--L--~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 38 QQIKQAWDNRQMDVVEQLMPTLK-DYP--L--YPYLEYRQLTQDLMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcc-CCC--c--HhHHHHHHHHhccccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHH
Confidence 34566677888888777666553 222 1 223222222222 2356677777776554 2234555556666777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEAL 326 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (686)
+.+++...++.+.. .+.+...-.....+....|+ .++|......+-..|.. .+..+..++..+.+.|.+....
T Consensus 111 ~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~-~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d 183 (644)
T PRK11619 111 RREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQ-QQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLA 183 (644)
T ss_pred HccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHH
Confidence 88888877663311 13455555667777888887 67787777777666533 5667777888777666554332
Q ss_pred --HHHHHHHHCCCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcC
Q 044251 327 --IIQMEMEKKGIPSNAIVYNTLINAYCK------------SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYS--RRM 390 (686)
Q Consensus 327 --~~~~~~~~~g~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~ 390 (686)
+=++.+...| +...-..|+..+.. ..+...+..++. .+.++...-..++.++. ...
T Consensus 184 ~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~ 255 (644)
T PRK11619 184 YLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQ 255 (644)
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHh
Confidence 2233333332 22222222222200 011111111111 11123221121222222 345
Q ss_pred CHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHH
Q 044251 391 QPEIVEKLLLELQDMG-LEPNA--KSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAY 467 (686)
Q Consensus 391 ~~~~a~~~~~~m~~~~-~~p~~--~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 467 (686)
+.+.|..++..+.... ..+.. .....+.......... ..+...+....... .+......-+..-...++++.+.
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~-~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVT-DEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCC-HHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 6788888888774432 22221 2223333223332112 45666666654332 24444455555566888999888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 468 AAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
..+..|-.. ..-...-..-+..++...|+.++|...|+.+..
T Consensus 333 ~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888887543 223445566677777778999999999998743
No 400
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.15 E-value=3.8e+02 Score=29.10 Aligned_cols=123 Identities=9% Similarity=-0.017 Sum_probs=59.6
Q ss_pred HhcCChhHHHHHHHHHHhcC-CCC---------CCHHHHHHHHHHHHccCChhHHHHHH-------HhcccCCC------
Q 044251 175 ANDGLLGCCLYFYEWMRLQE-PSL---------VSPRACSVLFPVLGRARMGDDLMVLF-------KNLPQSKE------ 231 (686)
Q Consensus 175 ~~~g~~~~Al~~~~~~~~~~-~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~-------~~~~~~~~------ 231 (686)
.....|++|...|..+.... |.. ........+..++-.+|+.+-+..++ +......+
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 34556777877777776652 211 11234444555566667665444433 33222111
Q ss_pred -------CCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 044251 232 -------FRDAHVYNAA---ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKM 297 (686)
Q Consensus 232 -------~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m 297 (686)
+.|...|-+| +..+.+.|-+..|+++.+-+......-|+.....+|..|+-..+.++-.+++++..
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1122333322 33445555666666665555554322245555555555554444355555555544
No 401
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.04 E-value=1.2e+02 Score=25.55 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 290 AWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
..+-++.+...++.|++.+....+++|.+-+++..|.++|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444455555566777777777777777777777777777766554
No 402
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.99 E-value=63 Score=21.82 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=21.9
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY 595 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 595 (686)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777766666665554
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.95 E-value=73 Score=29.28 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 583 IKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 583 ~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
..|++.+|..++.++...|+.++|.++.+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788888888888888888888888888888764
No 404
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.83 E-value=2.7e+02 Score=27.93 Aligned_cols=82 Identities=10% Similarity=0.004 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 180 LGCCLYFYEWMRLQEPS---LVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWK 256 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (686)
..+|.+.|+........ ..++.....+.....+.|..+....+++..... .+..-...++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 45666666666654222 455566666666666666655544444444432 355556666666666666666666
Q ss_pred HHHHHHhC
Q 044251 257 AYEAMEAN 264 (686)
Q Consensus 257 ~~~~m~~~ 264 (686)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66666654
No 405
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=48.65 E-value=3.5e+02 Score=28.53 Aligned_cols=128 Identities=6% Similarity=-0.010 Sum_probs=85.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC 248 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (686)
.-|..-...|++..|-+-...+++..|..+ ........++...|.++.+.+.+...... ......+...+++..-+.
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p--~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRNQQQDP--VLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhCCCCc--hhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhch
Confidence 334555567888888777766666655443 44555566778899999999888665432 224667888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 044251 249 GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKG 301 (686)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~ 301 (686)
|++++|..+-+-|....+... ..........-..|- ++++.-.+.++...+
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~-ei~~iaa~sa~~l~~-~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDE-EVLTVAAGSADALQL-FDKSYHYWKRVLLLN 421 (831)
T ss_pred hhHHHHHHHHHHHhccccCCh-hheeeecccHHHHhH-HHHHHHHHHHHhccC
Confidence 999999999999987654322 222211111222333 788888888887654
No 406
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=48.34 E-value=1.6e+02 Score=29.75 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 569 SKLPQLLKEMATLNIKPDS----VTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDV 634 (686)
Q Consensus 569 ~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a 634 (686)
+++..++..+... .|+. .-|.+++......|.++.++.+|++++..|-.|=.++-..++++|..
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 4677777777753 4553 45677778888889999999999999999998888888888888853
No 407
>PRK12798 chemotaxis protein; Reviewed
Probab=47.73 E-value=3.5e+02 Score=28.19 Aligned_cols=158 Identities=15% Similarity=0.030 Sum_probs=78.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC--CCCChhhHhhhHHHHHhcCCHHHH
Q 044251 389 RMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG--IKPTSHSYTALIHAYSVGGWHEKA 466 (686)
Q Consensus 389 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 466 (686)
.|+.+++.+.+..+......+....|-.|+.+-.........|+.+|+...-.- .-........-+....+.|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 456666666666555444455555555555544333333455666666554331 111122233344556677777777
Q ss_pred HHHHHHHHHc-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 467 YAAFENMLRE-EIKPSI-ETYTALLDAFRRSGDTGMMMKIWKLMMSE-KVEGTRVTFNILLDGFAKQGQYLEARDVVSEF 543 (686)
Q Consensus 467 ~~~~~~m~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 543 (686)
..+-..-... ...|-. ..+..+..++.+..+-..-.. +..++.. ...--..+|..+...-.-.|+.+-|.-.-.+.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 6665555443 112222 222333333333332222222 2222221 22223557777777777788888887777776
Q ss_pred HhCC
Q 044251 544 GKIG 547 (686)
Q Consensus 544 ~~~~ 547 (686)
....
T Consensus 284 ~~L~ 287 (421)
T PRK12798 284 LKLA 287 (421)
T ss_pred HHhc
Confidence 6543
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.52 E-value=37 Score=24.47 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 586 DSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 586 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
|-.-.-.+|.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445566777777777777777766653
No 409
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.40 E-value=5.2e+02 Score=30.11 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 287 AKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
.+.+..+++.+....-..+....+.++..|++
T Consensus 607 ~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 607 PKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 56677777777766555566666666666654
No 410
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.39 E-value=4.9e+02 Score=29.88 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=43.1
Q ss_pred HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHH
Q 044251 534 LEARDVVSEFG-KIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRD------FKRA 606 (686)
Q Consensus 534 ~~A~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~------~~~A 606 (686)
..+...++-.. ..+ .-++..+|.++..|++..+-+.-. .++.....+-. ...-....++.|.+.+. ...+
T Consensus 610 ~~~i~yl~f~~~~l~-~~~~~ihn~ll~lya~~~~~~ll~-~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~ 686 (911)
T KOG2034|consen 610 NQAIRYLEFCIEVLG-MTNPAIHNSLLHLYAKHERDDLLL-YLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCM 686 (911)
T ss_pred HHHHHHHHHHHHhcc-CcCHHHHHHHHHHhhcCCccchHH-HHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHH
Confidence 33444443332 333 447888888888888766544333 33332211101 12222344556655543 4455
Q ss_pred HHHHHHHHHCCCCCCHH
Q 044251 607 FFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 607 ~~~~~~m~~~g~~p~~~ 623 (686)
+.+|.+|++....-|.+
T Consensus 687 l~l~~~aVdlAL~~d~d 703 (911)
T KOG2034|consen 687 LNLFEDAVDLALQFDID 703 (911)
T ss_pred HHHHHHHHHHHhhcCHH
Confidence 66666666554444443
No 411
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.05 E-value=49 Score=34.58 Aligned_cols=110 Identities=9% Similarity=-0.018 Sum_probs=77.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC 248 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (686)
..+..+...+.++.|+.+|-++++.+|... ..|..-..++.+.+++..|+.=+.+..+.. +.....|---..++.+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca--~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCA--IYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcce--eeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhH
Confidence 346777788999999999999999988543 445555567778888888777666666533 23344555555666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044251 249 GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKN 283 (686)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 283 (686)
+.+.+|+..|+..... .|+..-...++.-|-..
T Consensus 86 ~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKL--APNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHHhhhc--CcCcHHHHHHHHHHHHH
Confidence 7888888888887765 78887777777666443
No 412
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.88 E-value=63 Score=24.57 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=19.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 044251 459 VGGWHEKAYAAFENMLREEIKPSI--ETYTALLDAFRRSGDTGMMM 502 (686)
Q Consensus 459 ~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~ 502 (686)
..++.++|+..|...++.-..+.. .++..++.+++..|++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555443221111 33444444444444444433
No 413
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=46.10 E-value=2.8e+02 Score=32.77 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHhcccCCCCCCHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQ--EPSLVSPRACSVLFPVLGRA-RMGDDLMVLFKNLPQSKEFRDAHVYN 239 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~ 239 (686)
.+......++.+...++|.+|..+.+.-.-. --...+|..|..-+..+.++ ++.+-.--++-.+.+... +...|.
T Consensus 693 PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv--t~tmY~ 770 (928)
T PF04762_consen 693 PRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV--TKTMYK 770 (928)
T ss_pred cHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc--cccccc
Confidence 4456668899999999999998887775433 11123566666656555543 444433333333332111 111111
Q ss_pred HHH------------HHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHCCCCC
Q 044251 240 AAI------------SGLFWCGRYDDAWKAYEAMEANNVRPD-HVTCSIMITAMRKNG--RSAKEAWEFFEKMNRKGVKL 304 (686)
Q Consensus 240 ~li------------~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g--~~~~~a~~~~~~m~~~~~~~ 304 (686)
... ......++....-+.+....+. ..+ ..-...+|.+|++.+ + +++|+.+..++.+.+
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~-le~aL~~I~~l~~~~--- 844 (928)
T PF04762_consen 771 DTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPD-LEEALQLIKELREED--- 844 (928)
T ss_pred cccccccccccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchh-HHHHHHHHHHHHhcC---
Confidence 111 1111222333333333332221 122 233455666666665 5 777888777777652
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 305 SQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD 384 (686)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 384 (686)
.......++.++- +-.+-++|+..+.. + |. --+++-+-..+.|+.+=+-+++++.+. +++..-| .|+
T Consensus 845 -~~~ae~alkyl~f---LvDvn~Ly~~ALG~-Y--Dl--~Lal~VAq~SQkDPKEYLPfL~~L~~l--~~~~rry--~ID 911 (928)
T PF04762_consen 845 -PESAEEALKYLCF---LVDVNKLYDVALGT-Y--DL--ELALMVAQQSQKDPKEYLPFLQELQKL--PPLYRRY--KID 911 (928)
T ss_pred -hHHHHHHHhHhee---eccHHHHHHHHhhh-c--CH--HHHHHHHHHhccChHHHHHHHHHHHhC--Chhheee--eHh
Confidence 1111111111111 11222333332221 0 11 112233333456777777777776654 2222212 222
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 044251 385 AYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 385 ~~~~~~~~~~a~~~~~~m 402 (686)
. ..+++++|++.+.++
T Consensus 912 ~--hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 912 D--HLKRYEKALRHLSAC 927 (928)
T ss_pred h--hhCCHHHHHHHHHhh
Confidence 2 457888888877653
No 414
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.60 E-value=3.8e+02 Score=28.06 Aligned_cols=376 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044251 204 SVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKN 283 (686)
Q Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 283 (686)
+-.+.-|...|+..+|.+..+++.. ........-.+++.+.-..-.-...+.++.+-. .-+...-..+..++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v-sffhhe~vkralv~ame~~~ae~l~l~llke~~----e~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV-SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGR----EEGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC-CchhhHHHHHHHHHHHhhhhcccceeccchhhh----hhcchhhhccccCchhh
Q ss_pred CCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 284 GRS-------AKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQ 356 (686)
Q Consensus 284 g~~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 356 (686)
+.. .-.|...|+...-..+.-.--.-+.+-..-...|+.+. ++.|++-... +|+-|...|+
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk~~~~-----------IIqEYFlsgD 360 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKKDLTP-----------IIQEYFLSGD 360 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHHhhHH-----------HHHHHHhcCC
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCCCChHHHHHHH
Q 044251 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPN--AKSYTCLISAYGRPRKMSDMAADA 434 (686)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~~A~~~ 434 (686)
..+..+.++++-.-...|-..-+.+-+..=.+...-+.|-.++..+.-.-+.+. ...|..|+...-...-..-.|-+.
T Consensus 361 t~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~e 440 (645)
T KOG0403|consen 361 TPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQE 440 (645)
T ss_pred hHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHH
Q ss_pred HHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc---------------------CCCCCHHHHHHHHHHHH
Q 044251 435 FLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE---------------------EIKPSIETYTALLDAFR 493 (686)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------~~~p~~~~~~~ll~~~~ 493 (686)
+.....+-+--++..=..+=....+......+.+.++..... .+..-..-...|+.-|.
T Consensus 441 lalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~ 520 (645)
T KOG0403|consen 441 LALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYE 520 (645)
T ss_pred HHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------
Q 044251 494 RSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG------- 566 (686)
Q Consensus 494 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g------- 566 (686)
..|+..+|..+.+++- ...-....++-+++.+..+.|+-..-+.++++.- .-...|-|.|-.+|.+-.
T Consensus 521 ~~GdisEA~~CikeLg-mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf----~sglIT~nQMtkGf~RV~dsl~Dls 595 (645)
T KOG0403|consen 521 LSGDISEACHCIKELG-MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECF----KSGLITTNQMTKGFERVYDSLPDLS 595 (645)
T ss_pred hccchHHHHHHHHHhC-CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH----hcCceeHHHhhhhhhhhhccCcccc
Q ss_pred -CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 567 -QTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 567 -~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 602 (686)
++..|.+.|+...+.+.. +..++-.|-..|-..++
T Consensus 596 LDvPna~ekf~~~Ve~~~~-~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 596 LDVPNAYEKFERYVEECFQ-NGIISKQLRDLCPSRLR 631 (645)
T ss_pred cCCCcHHHHHHHHHHHHHH-cCchhHHhhhcchhhhc
No 415
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=45.43 E-value=5.9e+02 Score=30.21 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 238 YNAAISGLFWCGRYDDAWKAYEAM 261 (686)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m 261 (686)
.-+.++-+...++|.+|..+.++-
T Consensus 697 VL~~ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 697 VLAGIRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHh
Confidence 334566677788888887766554
No 416
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=44.58 E-value=4e+02 Score=30.53 Aligned_cols=99 Identities=11% Similarity=0.122 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 044251 498 TGMMMKIWKLMMS-EKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 498 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 576 (686)
.+...+.++.+.+ .++..+...+..++.. ..|++..|+.++++....+ .|++. .+...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~-----------------~~~It--~~~V~ 238 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYS-----------------ANEVT--ETAVS 238 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhc-----------------cCCcC--HHHHH
Confidence 4555666666553 3666666666555543 3588888888877654322 11111 12223
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044251 577 EMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD 621 (686)
Q Consensus 577 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 621 (686)
.|. | .+|...+..++.++.. |+..+++.+++++...|+...
T Consensus 239 ~~L--G-~~d~~~i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 239 GML--G-ALDQTYMVRLLDALAA-GDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HHh--C-CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 333 3 2344445555555443 777777777777777665443
No 417
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.17 E-value=3.2e+02 Score=26.75 Aligned_cols=194 Identities=15% Similarity=0.084 Sum_probs=90.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHH
Q 044251 351 YCKSNQLEEAEGLFQEMKTKGLKPTSA-------TFNILMDAYSRRMQPEIVEKLLLEL----QDMGLEPNAKSYTCLIS 419 (686)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~ 419 (686)
..+.+++++|+..+.+++..|+..+.. +...+...|...|+.....+..... .+..-.-......+++.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 344455555555555555554433322 2233444555555443332222211 11111112334445555
Q ss_pred HhcCCCChHHHHHHHHHHHHHcCCCC-----ChhhHhhhHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHH-H
Q 044251 420 AYGRPRKMSDMAADAFLRMKRVGIKP-----TSHSYTALIHAYSVGGWHEKAYAAFENML----REEIKPSIETYTAL-L 489 (686)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~l-l 489 (686)
.+....+..+.-+.+.....+...+- ....-.-+|..+.+.|.+.+|+.+...+. +-.-+++..+...+ -
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES 172 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES 172 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH
Confidence 54443333344444444433321111 11223457888999999999998776553 33344554333222 2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHH
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSE----KVEGTRVTFNILLDGF--AKQGQYLEARDVVSEFG 544 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~ 544 (686)
.+|....++.++..-+-..... -+||....---|+.+- |.-.++..|..+|-+..
T Consensus 173 Kvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~ 233 (421)
T COG5159 173 KVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEAL 233 (421)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHH
Confidence 3444555555444443333221 3445444433444443 33456777777776654
No 418
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.85 E-value=3.3e+02 Score=27.44 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---hCCCCCCHHHH--HHHHHHHHhcCCccHHHHHHHHHHH-----CCCCCCH
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFG---KIGLQPTLMTY--NMLMNAYGRGGQTSKLPQLLKEMAT-----LNIKPDS 587 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~ 587 (686)
.....++....+.++.++|.++++++. +..-.|+.+.| ...+.++...|+..++.+++.+... -|+.|+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred HHHHHHHH--HHHHcCCHHHHHH
Q 044251 588 VTYSTMIY--AFVRVRDFKRAFF 608 (686)
Q Consensus 588 ~~~~~li~--~~~~~g~~~~A~~ 608 (686)
.+--..+. .|...|++....+
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 419
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.64 E-value=3e+02 Score=26.07 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=51.3
Q ss_pred HHHHHHHHH--HccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 202 ACSVLFPVL--GRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITA 279 (686)
Q Consensus 202 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 279 (686)
.+...+.++ ...+++++|...+-.-. ..++ -...++.++...|+...|+.+++.+.-. ..+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps---~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPS---LIPW--FPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCC---CCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH
Confidence 444444443 34566666666663321 1111 1223666666677777777777665422 1122223333333
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 280 MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFC 317 (686)
Q Consensus 280 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 317 (686)
..++. +.+|+.+-+...... ....+..++..+.
T Consensus 151 -La~~~-v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 -LANGL-VTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred -HHcCC-HHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 33444 677776666555421 2344555555554
No 420
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.55 E-value=1.6e+02 Score=32.30 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 487 ALLDAFRRSGDTGMMMKIWKLMMSEK--VEGTRVTFNILLDGFAKQGQYL------EARDVVSEFGKIGLQPTLMTYNML 558 (686)
Q Consensus 487 ~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 558 (686)
+++.+|...|++-.+.++++.....+ -..-...+|..++...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67788888888888888888877652 2333556777777777777643 3344444433 34467777777
Q ss_pred HHHHH
Q 044251 559 MNAYG 563 (686)
Q Consensus 559 i~~~~ 563 (686)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 66544
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.96 E-value=4.2e+02 Score=27.51 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=40.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHhc
Q 044251 454 IHAYSVGGWHEKAYAAFENMLREEIKPSIE--TYTALLDAFR--RSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 511 (686)
+..+.+.+++..|..+|..+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556889999999999999886 555554 4445555553 456788888888887755
No 422
>PRK10941 hypothetical protein; Provisional
Probab=41.88 E-value=2.9e+02 Score=27.01 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 556 NMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 556 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+.|-.+|.+.++++.|++..+.+... .| |+.-+.--+-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44555566666666666666666642 34 3444454555566666666666666666554
No 423
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.64 E-value=3.6e+02 Score=26.68 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=36.9
Q ss_pred HcCCHHHHHHHHHH-HHhCCCCCCHH----HHHHHHHHHHhcCCccHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 529 KQGQYLEARDVVSE-FGKIGLQPTLM----TYNMLMNAYGRGGQTSKLPQLLK-EMATLNIKPDSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 529 ~~g~~~~A~~~~~~-~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~pd~~~~~~li~~~~~~g~ 602 (686)
....+++.....++ |.+.+ -|+.. .|..++.+ +.|.+-.++.. ++.+ -..+|.-|+.+++..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsa----veWnKkeelva~qalr-----hlK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSA----VEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHH----HhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCCh
Confidence 33455555555544 55555 44544 35555544 33333222221 1211 13368889999999998
Q ss_pred HHHHHH
Q 044251 603 FKRAFF 608 (686)
Q Consensus 603 ~~~A~~ 608 (686)
.+-++-
T Consensus 337 sEL~Ll 342 (412)
T KOG2297|consen 337 SELELL 342 (412)
T ss_pred HHHHHH
Confidence 776543
No 424
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.63 E-value=3.6e+02 Score=26.68 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCCHHHH
Q 044251 519 TFNILLDGFAKQGQYLEA 536 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A 536 (686)
.|.-|+.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 566677777777776544
No 425
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.58 E-value=70 Score=23.02 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 345 NTLINAYCKSNQLEEAEGLFQEMK 368 (686)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~ 368 (686)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334555555555555555555544
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.57 E-value=70 Score=31.45 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
+..|....+.||+++|+.+++++.+.|+.--..+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 4555555555555555555555555554433333
No 427
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.02 E-value=2.2e+02 Score=24.02 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQM 613 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m 613 (686)
++.++|..|..+|+--. ...|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77777777777666544 556677777777777777777777653
No 428
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.99 E-value=24 Score=35.08 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=55.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDS-VTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~ 607 (686)
..|.+++|++.|...+.+. ++....|..-..++.+.++...|++=+..... +.||. .-|-.-..+-.-.|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 3466777777777666655 44566666666667777777777776666664 34442 22222233444567777777
Q ss_pred HHHHHHHHCCCCCCH
Q 044251 608 FYHKQMVKSGQVPDV 622 (686)
Q Consensus 608 ~~~~~m~~~g~~p~~ 622 (686)
..+..+.+.++.+..
T Consensus 203 ~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 203 HDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHhccccHHH
Confidence 777777776654444
No 429
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.41 E-value=5.9e+02 Score=28.86 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 044251 498 TGMMMKIWKLMMS-EKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 498 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 576 (686)
.+.....+..+.+ .|+..+......++... .|++..|..+++++...| . |.+. .+...
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g-~----------------g~It--~e~V~ 238 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALG-S----------------GKVA--ENDVR 238 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhc-C----------------CCcC--HHHHH
Confidence 3455555555544 47777777777766544 588888888887765432 1 1111 12222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044251 577 EMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVP 620 (686)
Q Consensus 577 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 620 (686)
.|. |. .+......|+.++.. ++...++.+++++.+.|+.+
T Consensus 239 ~lL--G~-~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 239 QMI--GA-VDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred HHH--cc-cCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCH
Confidence 222 21 233344455555443 66677777777776666543
No 430
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.96 E-value=2.3e+02 Score=23.91 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 044251 253 DAWKAYEAMEANNVRPD-HVTCSIMITAMRKNGRSAKEAWEFFEKM 297 (686)
Q Consensus 253 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m 297 (686)
.+.++|..|...|+--. ..-|......+...|+ +++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~-~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGN-FKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHhh
Confidence 77777777766655444 3445555555666666 77777777653
No 431
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.58 E-value=2.1e+02 Score=23.36 Aligned_cols=81 Identities=7% Similarity=0.019 Sum_probs=46.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 177 DGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWK 256 (686)
Q Consensus 177 ~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (686)
....++|..+.+|+...+... ..+--+.+..+..+|++++|+..=... ..||...|-+|.. .+.|-.+++..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~~--E~v~lIr~~sLmNrG~Yq~ALl~~~~~----~~pdL~p~~AL~a--~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEME--EVVALIRLSSLMNRGDYQEALLLPQCH----CYPDLEPWAALCA--WKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTTH--HHHHHHHHHHHHHTT-HHHHHHHHTTS------GGGHHHHHHHH--HHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHHHhhHHHHHHHHhcccC----CCccHHHHHHHHH--HhhccHHHHHH
Confidence 346788999999988875411 122233344577888888883322222 2267766665543 56777777777
Q ss_pred HHHHHHhCC
Q 044251 257 AYEAMEANN 265 (686)
Q Consensus 257 ~~~~m~~~g 265 (686)
.+.++...|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 777776554
No 432
>PRK10941 hypothetical protein; Provisional
Probab=39.19 E-value=3.8e+02 Score=26.22 Aligned_cols=60 Identities=8% Similarity=-0.077 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+.+-.+|.+.++++.|.++.+.+.... +.++.-+.--+-.|.+.|.+..|..=++..++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3445556677777777777777777665 33566666666667777777777777766654
No 433
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.92 E-value=32 Score=29.18 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=22.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITA 279 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 279 (686)
+.+.|.-.+|..+|..|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 33445666778888888888777763 6666654
No 434
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.52 E-value=1.2e+02 Score=26.41 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=35.5
Q ss_pred HHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 435 FLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
...+.+.|++.+. --..++..+.+.+..-.|.++|+++.+.+...+..|....++.+...|
T Consensus 9 ~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344455554332 234455666666666677777777777666666666666666666555
No 435
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=37.95 E-value=2.6e+02 Score=24.00 Aligned_cols=87 Identities=11% Similarity=0.221 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQ---TSKLPQLLKEMATLNIKPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
.++..+--.+.+++.+..+ ..+.+.+|++..+.. .|+ ..-...|.-++.+.++++.++++.+.+++. +||..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcH
Confidence 5566677778888887665 456778888888622 342 333445556889999999999999999874 57877
Q ss_pred HHHHHHHHHHhhhhh
Q 044251 624 SYEKLRSILDVKVAT 638 (686)
Q Consensus 624 ~~~~l~~~l~a~~~~ 638 (686)
-...|-+..+.+...
T Consensus 106 Qa~~Lk~~ied~itk 120 (149)
T KOG3364|consen 106 QALELKETIEDKITK 120 (149)
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666666444433
No 436
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.93 E-value=1.3e+02 Score=26.22 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=34.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044251 328 IQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM 390 (686)
Q Consensus 328 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 390 (686)
+...+.+.|++++. -...++..+.+.++.-.|.++++++.+.+...+..|...-+..+...|
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444555655433 334456666666666777777777777666555555444455544443
No 437
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=37.31 E-value=7.2e+02 Score=30.09 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC-----
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFG-------KIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL----- 581 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 581 (686)
+.....|..+...+-+.|+.++|...-.+.. ...-.-+...|..+...+...++...|+..+.+....
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 4556677777777788888888877654421 1111223455666666666666777777777666532
Q ss_pred C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----C---CCCHHHHHHHHHHHHhhhhhcc-hhhhHHHHHHH
Q 044251 582 N-IKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG----Q---VPDVKSYEKLRSILDVKVATKN-RRDKSAILGII 651 (686)
Q Consensus 582 g-~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~---~p~~~~~~~l~~~l~a~~~~~~-~~~~~~~~~~~ 651 (686)
| ..|. ..++..+-..+...++++.|+++++.+.+.. . .....+|..+.+...+.....+ .......++++
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHH
Confidence 1 1343 3334444444555678888888888776541 1 1223455555555544333322 22223334444
Q ss_pred Hhcccchh
Q 044251 652 NSKMGMVK 659 (686)
Q Consensus 652 ~~~~~~~~ 659 (686)
....|..+
T Consensus 1130 ~~qlg~~h 1137 (1236)
T KOG1839|consen 1130 KEQLGPDH 1137 (1236)
T ss_pred HHhhCCCc
Confidence 44444333
No 438
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.16 E-value=1.7e+02 Score=23.86 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 555 YNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 555 ~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777777777777777777777765
No 439
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.10 E-value=1.2e+02 Score=23.97 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=32.3
Q ss_pred HHcCCHHHHHHHHHHHHhCC---CCCC-----HHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIG---LQPT-----LMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~---~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+.|++.+|.+.+.++.+.. ..+. ....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677777766555543221 1111 12223345566788999999999998874
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.08 E-value=5e+02 Score=26.96 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=38.5
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCChh--hHhhhHHHHH--hcCCHHHHHHHHHHHHHc
Q 044251 417 LISAYGRPRKMSDMAADAFLRMKRVGIKPTSH--SYTALIHAYS--VGGWHEKAYAAFENMLRE 476 (686)
Q Consensus 417 ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 476 (686)
....| +.+++ ..|.++|..+... +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~-n~~~y-~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELF-NRYDY-GAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHH-hcCCH-HHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34444 45576 7899999999886 444433 4555555553 466788999999987764
No 441
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.79 E-value=55 Score=32.14 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGL 548 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 548 (686)
|+.-|....+.||+++|+.++++...+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44455555555555555555555555543
No 442
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.34 E-value=1.6e+02 Score=27.01 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 373 KPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 373 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
.|+..+|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666667777777666666654
No 443
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=36.08 E-value=3.5e+02 Score=24.85 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=7.9
Q ss_pred hcCCccHHHHHHHHHH
Q 044251 564 RGGQTSKLPQLLKEMA 579 (686)
Q Consensus 564 ~~g~~~~A~~l~~~m~ 579 (686)
+.|+++.|.++++-|.
T Consensus 133 ~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 133 RKGSFEEAERFLKFME 148 (204)
T ss_pred HhccHHHHHHHHHHHH
Confidence 3445555555555444
No 444
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.91 E-value=49 Score=28.07 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=20.6
Q ss_pred hcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 564 RGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYA 596 (686)
Q Consensus 564 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~ 596 (686)
..|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345556677888888887777763 5666554
No 445
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=34.26 E-value=1.3e+02 Score=23.34 Aligned_cols=57 Identities=12% Similarity=0.001 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVL 222 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (686)
+....-.+-..+-+.|.++.+.+++.......+.. .+...++.++..++.-.-|..+
T Consensus 31 ~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l 87 (90)
T cd08780 31 RDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDL 87 (90)
T ss_pred chhHHHHHHhhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHH
Confidence 44444455556666667777777666666554433 3455556665555554444443
No 446
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.80 E-value=9e+02 Score=29.00 Aligned_cols=156 Identities=15% Similarity=0.222 Sum_probs=96.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-----------------------CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 456 AYSVGGWHEKAYAAFENMLRE-----------------------EIKPS-----IETYTALLDAFRRSGDTGMMMKIWKL 507 (686)
Q Consensus 456 ~~~~~g~~~~A~~~~~~m~~~-----------------------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~ 507 (686)
+|...|...+|+..|.+.... |-.|. ..-|..+++.+...+-.+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 467788888888888765431 22222 24477888888899999999988888
Q ss_pred HHhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCcc-----------
Q 044251 508 MMSEK---VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT----LMTYNMLMNAYGRGGQTS----------- 569 (686)
Q Consensus 508 ~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~----------- 569 (686)
+++.- .+.-..+++.+.+-....|.+-+|...+-. .|| ......|+..++.+|.++
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchH
Confidence 87652 122345677888888888888888876654 334 345666777777777654
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHH-HHHHHHHHHCC
Q 044251 570 -KLPQLLKEMATLNIKPDSVTYSTMIYA-FVRVRDFKRA-FFYHKQMVKSG 617 (686)
Q Consensus 570 -~A~~l~~~m~~~g~~pd~~~~~~li~~-~~~~g~~~~A-~~~~~~m~~~g 617 (686)
+....+.+-..+.......-|..|+-| +...+++.+| --+|+...+.+
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 344422222222222222234444444 4667777665 44566665543
No 447
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=33.79 E-value=7.7e+02 Score=28.20 Aligned_cols=88 Identities=9% Similarity=0.081 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCccHHHHHH
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFA-KQGQYLEARDVVSEFGKIGLQPTLM-TYNMLMNAYGRGGQTSKLPQLL 575 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~ 575 (686)
+..|...|.........+...+.......+. -+++++.|..+|+.+...|.. +.. .|-..+..=...|+...+..++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 3444555554444433444444444444444 467889999999887766522 333 5555555555668888888877
Q ss_pred HHHHHCCCCCC
Q 044251 576 KEMATLNIKPD 586 (686)
Q Consensus 576 ~~m~~~g~~pd 586 (686)
+.....-..|+
T Consensus 521 R~ay~~~~~~~ 531 (881)
T KOG0128|consen 521 RKAYSQVVDPE 531 (881)
T ss_pred HHHHhcCcCch
Confidence 77765444443
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.50 E-value=4.8e+02 Score=25.67 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCh---
Q 044251 375 TSATFNILMDAYSRRMQPEIVEKLLLELQD----MGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTS--- 447 (686)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 447 (686)
....+..+...|++.++.+.+.++..+..+ .|.+.|+...-.-+..........++-++..+.|.+.|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345666777788888888777776665543 3555555544444444333334456666777777777654332
Q ss_pred -hhHhhhHHHHHhcCCHHHHHHHHHHHHH
Q 044251 448 -HSYTALIHAYSVGGWHEKAYAAFENMLR 475 (686)
Q Consensus 448 -~~~~~li~~~~~~g~~~~A~~~~~~m~~ 475 (686)
.+|..+- +....++.+|-.++.+...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2333322 2223456677666666554
No 449
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.34 E-value=4.6e+02 Score=25.47 Aligned_cols=26 Identities=23% Similarity=0.034 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 304 LSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
.++..+..+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 46777888888888888888777544
No 450
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=33.19 E-value=3.8e+02 Score=28.68 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhccc
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQ 228 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (686)
-+.+...+..++..+..++.+++|+++.+....+ ..|..++.+..+..+..-+...|..+.+
T Consensus 569 lpisV~py~~iL~e~~sssKWeqavRLCrfv~eq-------TMWAtlAa~Av~~~~m~~~EiAYaA~~~ 630 (737)
T KOG1524|consen 569 LPISVNPYPEILHEYLSSSKWEQAVRLCRFVQEQ-------TMWATLAAVAVRKHQMQISEIAYAAALQ 630 (737)
T ss_pred EeeeccccHHHHHHHhccchHHHHHHHHHhccch-------HHHHHHHHHHHhhccccHHHHHHHHhhc
Confidence 3456677888999999999999999999988765 6788887777776666555555544433
No 451
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.00 E-value=46 Score=33.18 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=38.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 175 ANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDA 254 (686)
Q Consensus 175 ~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (686)
...|.+++|+++|-.+....|... ..|.--..++.+.+++..|++=++....... .+..-|-.--.+..-.|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~airD~d~A~ein~-Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAIRDCDFAIEINP-DSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhhhhhhhhhccCc-ccccccchhhHHHHHhhchHHH
Confidence 345555555555555555443221 3333334444455555555444444333211 2222222222333334555555
Q ss_pred HHHHHHHHhCCC
Q 044251 255 WKAYEAMEANNV 266 (686)
Q Consensus 255 ~~~~~~m~~~g~ 266 (686)
...|....+.+.
T Consensus 202 a~dl~~a~kld~ 213 (377)
T KOG1308|consen 202 AHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHhccc
Confidence 555555544433
No 452
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.41 E-value=2.8e+02 Score=25.23 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=16.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
.+-+|.+.|.+++|.++++....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34467777777777777777765
No 453
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=32.35 E-value=74 Score=33.32 Aligned_cols=104 Identities=8% Similarity=0.004 Sum_probs=56.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 044251 454 IHAYSVGGWHEKAYAAFENMLREEIKPSIET-YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQ 532 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 532 (686)
+.-+.+.+.++.|..++.+.++ ..||... |..-..++.+.+++..|+.-..++++.. +-....|-.=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 3445556667777777777766 3454433 3333356666677777776666666554 2223333333444555556
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 533 YLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 533 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
+.+|...|+..... .|+..-...++.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 66666666665442 45544444444443
No 454
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.94 E-value=4.5e+02 Score=24.86 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=10.0
Q ss_pred HHHHHhcCCccHHHHHHHHH
Q 044251 559 MNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m 578 (686)
|......|++++|++.+...
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 34444555555555555444
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.77 E-value=3e+02 Score=27.24 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 467 YAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
.++|+.+.+.++.|....+.-+.-.+.+.=.+..++.+|+.+...... |..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHH
Confidence 456666667777777777776666666666777777777777654322 555555554
No 456
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.62 E-value=1.8e+02 Score=23.71 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=10.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEF 543 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~ 543 (686)
++.-|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344455556666666655543
No 457
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=31.54 E-value=9.4e+02 Score=28.49 Aligned_cols=262 Identities=11% Similarity=0.010 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044251 338 PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCL 417 (686)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (686)
.++..+....+..+.+.+..+ +...+..++.. ++...-...+.++.+.+........+..+.. .+|...-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHH
Confidence 347777777777777776543 44545455432 2433333444444433221111223333333 2455555555
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044251 418 ISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
+.++...+.. + ...+...+ . .+|...-...+.++.+.+..+. +.... ..++...-...+.++...+.
T Consensus 705 ~~aL~~~~~~-~-~~~l~~~L-~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 705 LDVLRALRAG-D-AALFAAAL-G---DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHhhccC-C-HHHHHHHh-c---CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhcc
Confidence 5555543211 1 22222222 2 2455555666666666654432 22222 34566666777777777665
Q ss_pred HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 044251 498 TGM-MMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 498 ~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 576 (686)
.+. +...+..+.. .++..+-...+.++.+.|....+...+..+++ .++..+-...+.++.+.+. .++...+.
T Consensus 772 ~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 772 GGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 443 3344444443 34677777788888888876555444544443 3455555666777777765 45666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 577 EMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 577 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
.+.. .|+..+-...+.++.+.+....+...+..+++. +|..+-......|
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D---~d~~Vr~~A~~aL 894 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD---SDADVRAYARRAL 894 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 6664 567777777777777754445666677666653 4555444444443
No 458
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.47 E-value=2.5e+02 Score=27.80 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=35.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 327 IIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYS 387 (686)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 387 (686)
++++.+...++.|.-.++.-+.-.+.+.=.+.+++.+|+.+... ..-|..|+.+||
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 56666666677777666666666666666777777777776652 223555555554
No 459
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.32 E-value=6.2e+02 Score=26.31 Aligned_cols=62 Identities=11% Similarity=-0.019 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSK--EFRDAHVYNAAISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (686)
+.+.-+...|..+|+++.|++.|-+....- ....+..|-.+|..-.-.|+|........+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 444555556666666666666665533210 00123344455555555566655555544443
No 460
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.68 E-value=2.6e+02 Score=21.76 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=20.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 573 QLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 573 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 614 (686)
++|+-....|+..|+..|..+++.+.-.--++...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444555555555555554444444444444444443
No 461
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.28 E-value=2.7e+02 Score=21.78 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=17.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 044251 318 DEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLE 358 (686)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 358 (686)
..|+.+.|.+++..+. +| ...|..++.++...|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555555 32 223445555555444433
No 462
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=30.13 E-value=3.6e+02 Score=23.22 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHccCCh---hHHHHHHHhccc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 044251 200 PRACSVLFPVLGRARMG---DDLMVLFKNLPQ-SKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDH 270 (686)
Q Consensus 200 ~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 270 (686)
..+--.+.-++.+..+. .+-+.+|+.+.. ............|.-++.+.+++++++++.+.+.+. .||.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n 104 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNN 104 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCc
Confidence 34444445555555443 345667777664 222234555566777888888999998888888776 5554
No 463
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.71 E-value=6.8e+02 Score=26.30 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044251 389 RMQPEIVEKLLLELQDMGLEPNAKSYT 415 (686)
Q Consensus 389 ~~~~~~a~~~~~~m~~~~~~p~~~~~~ 415 (686)
..+++.|..++..|.+.|..|....-.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rr 269 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARR 269 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 467777888888887777665543333
No 464
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=29.53 E-value=7.5e+02 Score=26.74 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=61.8
Q ss_pred HHHHHH-HHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHH
Q 044251 201 RACSVL-FPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG--LFWCGRYDDAWKAYEAMEANNVRPD--HVTCSI 275 (686)
Q Consensus 201 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ 275 (686)
..|..+ ++++.+.|+.+.|..++.+++. ...+.....-.++.+ .....++..|...|.+.....+.++ ...|..
T Consensus 63 ~~~~llAa~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~ 141 (604)
T COG3107 63 NDWLLLAARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQA 141 (604)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHH
Confidence 344443 5678899999999999999987 555666666666654 4457788999999998876655555 345566
Q ss_pred HHHHHHHcCCCHHHHHH
Q 044251 276 MITAMRKNGRSAKEAWE 292 (686)
Q Consensus 276 ll~~~~~~g~~~~~a~~ 292 (686)
.+.++...|+.++.+.+
T Consensus 142 ~a~a~ea~~~~~~a~ra 158 (604)
T COG3107 142 RADALEARGDSIDAARA 158 (604)
T ss_pred HHHHHhcccchHHHHHH
Confidence 66666666554444333
No 465
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=29.40 E-value=1.6e+02 Score=21.89 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=22.2
Q ss_pred hhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 044251 216 GDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG 249 (686)
Q Consensus 216 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (686)
.+-|..++..+.. ...++++.||++...+.+++
T Consensus 13 tEmA~~mL~DLr~-dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 13 TEMAQQMLADLRD-DEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHhcc-hhhcChHHHHHHHHHHHHcc
Confidence 3456677776665 33478888888887776654
No 466
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=29.29 E-value=6.5e+02 Score=25.91 Aligned_cols=200 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCC------------hhhHhhhHHHHHhcCCHHHHHHHHHHHHHc-------------------
Q 044251 428 SDMAADAFLRMKRVGIKPT------------SHSYTALIHAYSVGGWHEKAYAAFENMLRE------------------- 476 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------- 476 (686)
..++...|......+ .|+ +.++-.+...+...|+.+.|.+++++.+-.
T Consensus 10 Y~~~q~~F~~~v~~~-Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSH-DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HHHHHHHHHHHHHcc-CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q ss_pred ------CCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh-
Q 044251 477 ------EIKPSIETYTALL---DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA-KQGQYLEARDVVSEFGK- 545 (686)
Q Consensus 477 ------~~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~- 545 (686)
...-|...|.++. ..+.+.|-+..|.++-+.+...+...|......+|+.|+ +.++++--+++++....
T Consensus 89 ~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 89 NCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred ccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Q ss_pred -----CCCCCCHHHHHHHHHHHHhcCCc-------------cHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 546 -----IGLQPTLMTYNMLMNAYGRGGQT-------------SKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 546 -----~~~~p~~~~~~~li~~~~~~g~~-------------~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 607 (686)
...-|+..-=.+|........+. ++|...+.++... =+.++..|+..+.-.++..-..
T Consensus 169 ~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l~~~~~~~~~~ 244 (360)
T PF04910_consen 169 CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKLGISPDSSVSN 244 (360)
T ss_pred hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHhccccchhhhc
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 608 FYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 608 ~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
.-.-.-...+..+.......+.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~ll~~lY 269 (360)
T PF04910_consen 245 HPHFSPSSWSSEPPSDSLKLLTELY 269 (360)
T ss_pred CCCCcccccccCCchhHHHHHHHHH
No 467
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.08 E-value=2.8e+02 Score=26.72 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 343 VYNTLINAYCKSNQLEEAEGLFQEMKT----KG-LKPTSATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
..-.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+--+|
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334566778888888888888887742 12 1223344555667777777777776665544
No 468
>PRK09857 putative transposase; Provisional
Probab=29.01 E-value=3.8e+02 Score=26.63 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044251 555 YNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD 621 (686)
Q Consensus 555 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 621 (686)
+..++.-..+.|+.++..++++.+.+. +........++..-+.+.|.-++++++.++|+..|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444445566666666666666553 233344455666666677777778888888888886433
No 469
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.57 E-value=4.3e+02 Score=25.01 Aligned_cols=98 Identities=10% Similarity=0.072 Sum_probs=54.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCH
Q 044251 172 ELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRY 251 (686)
Q Consensus 172 ~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (686)
-.+...+++++|++++- .|.. .+.-...++.++...|+.+.|+.++..+... ..+......++.. ..++.+
T Consensus 86 ~W~LD~~~~~~A~~~L~-----~ps~-~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 86 FWLLDHGDFEEALELLS-----HPSL-IPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHhChHhHHHHHHHhC-----CCCC-CcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCH
Confidence 33445566677766662 2211 1233335667777778888888888775432 1233444444444 666788
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 252 DDAWKAYEAMEANNVRPDHVTCSIMITAMR 281 (686)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 281 (686)
.+|+..-+...+. -....+..++..+.
T Consensus 157 ~EAf~~~R~~~~~---~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 157 TEAFSFQRSYPDE---LRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHhCchh---hhHHHHHHHHHHHH
Confidence 8887777666542 11344555555554
No 470
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.55 E-value=9.1e+02 Score=27.37 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHcC
Q 044251 289 EAWEFFEKMNRKGVK---LSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAI----------VYNTLINAYCKSN 355 (686)
Q Consensus 289 ~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----------~~~~li~~~~~~g 355 (686)
+-..++.+|.++--. ....+...++-.|....+++...++.+.+... ||.. .|.-.++---+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 334455566554222 23456666666777777777777777776654 1111 1111222222346
Q ss_pred CHHHHHHHHHHHHHC--CCCCCHHHHHH-----H--HHHHHhcCCHHHHHHHHHHHHH
Q 044251 356 QLEEAEGLFQEMKTK--GLKPTSATFNI-----L--MDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 356 ~~~~A~~~~~~m~~~--g~~p~~~~~~~-----l--l~~~~~~~~~~~a~~~~~~m~~ 404 (686)
+-+.|+...-.|.+. .+.||.....- + -..|...+..+.|.++|++.-+
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 677777766666554 24455432211 0 1112234455666677766654
No 471
>PRK12798 chemotaxis protein; Reviewed
Probab=28.24 E-value=7.1e+02 Score=26.03 Aligned_cols=194 Identities=8% Similarity=0.034 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL--FWCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT 278 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 278 (686)
+.....+.....-|++.....++..-.. ++. -+.++.+. .-.|+-.+|.+.|..+.-..+++....|..|+.
T Consensus 82 rNv~Aa~iy~lSGGnP~vlr~L~~~d~~----~~~--d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~ 155 (421)
T PRK12798 82 RNVDAALIYLLSGGNPATLRKLLARDKL----GNF--DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQ 155 (421)
T ss_pred cchhHHHhhHhcCCCHHHHHHHHHcCCC----Chh--hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHH
Confidence 4444444445566778777777665443 211 12233322 237899999999999877666788888999998
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHH
Q 044251 279 AMRKNGRSAKEAWEFFEKMNRK--GVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVY---NTLINAYCK 353 (686)
Q Consensus 279 ~~~~~g~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~---~~li~~~~~ 353 (686)
+-...+.+...|+.+|++..-. |.-......---+......|+.+.+..+-.....+ +..++... ..+...+.+
T Consensus 156 a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~ 234 (421)
T PRK12798 156 GNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVR 234 (421)
T ss_pred HHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHh
Confidence 8887777799999999987643 11112223333445566777777776655555444 22233221 112222333
Q ss_pred cC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 354 SN---QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 354 ~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
.+ ..+....++..|.. .--...|..+.+.-.-.|+.+.|...-.+.+.
T Consensus 235 ~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~ 285 (421)
T PRK12798 235 LDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFASERALK 285 (421)
T ss_pred ccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 22 22222222222211 11233566666666666776666655555544
No 472
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=28.23 E-value=1.1e+03 Score=28.06 Aligned_cols=262 Identities=11% Similarity=-0.008 Sum_probs=147.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 303 KLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNIL 382 (686)
Q Consensus 303 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 382 (686)
.++..+-...+..+.+.+..+ +...+..+... ++..+-...+.++.+.+........+..++.. +|...-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 457777777777777777544 44444444432 35555556666665543322222333344432 355555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCC
Q 044251 383 MDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGW 462 (686)
Q Consensus 383 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 462 (686)
+.++...+..+ ...++..+. .+|...-...+.++.+.+.. + + + ..... .++...-...+.++...+.
T Consensus 705 ~~aL~~~~~~~-~~~l~~~L~----D~d~~VR~~Av~aL~~~~~~-~-~--l-~~~l~---D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 705 LDVLRALRAGD-AALFAAALG----DPDHRVRIEAVRALVSVDDV-E-S--V-AGAAT---DENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHhhccCC-HHHHHHHhc----CCCHHHHHHHHHHHhcccCc-H-H--H-HHHhc---CCCHHHHHHHHHHHHHhcc
Confidence 56555433211 122333222 45666666667777665432 2 1 1 22222 3466666667777777765
Q ss_pred HHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 463 HEK-AYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVS 541 (686)
Q Consensus 463 ~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 541 (686)
.+. +...+..+.. .++...-...+.++...|....+...+..+++ .++..+-...+.++...+. .++...+.
T Consensus 772 ~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 772 GGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 433 3455555543 45777888888888888876655444555553 3455566667777777765 45666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 542 EFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAF 597 (686)
Q Consensus 542 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 597 (686)
.+.+ .++...-...+.++.+.+....+...+..+.+ .+|..+-.....++
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL 894 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRAL 894 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 6553 56777777777777775434567777777775 34555544444443
No 473
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.08 E-value=2e+02 Score=21.88 Aligned_cols=40 Identities=23% Similarity=0.131 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 592 TMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 592 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
++++-+.++.-.++|+++++.|.+.| ..+.+....|-.-+
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L~~~~ 75 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKALRVTL 75 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHhhH
Confidence 34566778888899999999999987 45666555544333
No 474
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.53 E-value=3e+02 Score=26.48 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 307 EVVGALMKSFCDEGLKNEALIIQMEMEKK----G-IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMK 368 (686)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (686)
.....+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+--+|.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34456778899999999999999998532 2 23345566777888888999988887766554
No 475
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.47 E-value=4.7e+02 Score=28.98 Aligned_cols=75 Identities=11% Similarity=0.149 Sum_probs=54.1
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhcCCCCCHHHHHHH
Q 044251 452 ALIHAYSVGGWHEKAYAAFENMLRE--EIKPSIETYTALLDAFRRSGDTG------MMMKIWKLMMSEKVEGTRVTFNIL 523 (686)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 523 (686)
.|+.+|..+|++-.+..+++..... |-+.=...|+..++...+.|.++ .+.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998764 22333467888888889999764 3344444433 55677888877
Q ss_pred HHHHHH
Q 044251 524 LDGFAK 529 (686)
Q Consensus 524 i~~~~~ 529 (686)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766544
No 476
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.13 E-value=2.4e+02 Score=25.28 Aligned_cols=60 Identities=7% Similarity=-0.014 Sum_probs=35.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 332 MEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQP 392 (686)
Q Consensus 332 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (686)
+.+.|++.+.. -..++..+...++.-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34456654433 3344555555555667777777777777666666655566666555543
No 477
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.91 E-value=2.8e+02 Score=26.01 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=11.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 044251 241 AISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
+.....+.|++++|.+.|..+..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHc
Confidence 33444445555555555555544
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.91 E-value=2.4e+02 Score=25.31 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=23.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044251 453 LIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
++..+...++.-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 334444444445566666666655555555555555555555543
No 479
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=26.82 E-value=5e+02 Score=23.85 Aligned_cols=183 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044251 369 TKGLKPTSATFNILMDAYSR----RMQPEIVEKLLLELQDMGLEP----NAKSYTCLISAYGRPRKMSDMAADAFLRMKR 440 (686)
Q Consensus 369 ~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~ 440 (686)
+.|+.++...++.++..+.+ .++.+.+..+=.++...++.. +......-+..|...|++..
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~k----------- 69 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTK----------- 69 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHH-----------
Q ss_pred cCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 044251 441 VGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI-ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVT 519 (686)
Q Consensus 441 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 519 (686)
=...|..+-.++-+.++++.-.....+.+-+..+... .-|.....+-++.-..+++.+ .+-..+
T Consensus 70 -----lg~ly~nv~~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK----------~~LGRi 134 (233)
T PF14669_consen 70 -----LGNLYINVKMGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDK----------TLLGRI 134 (233)
T ss_pred -----HhhHHhhHHhhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhh----------hhhhHH
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--------------HHHHHHHHHHHhcCCccHHHHHHHH
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTL--------------MTYNMLMNAYGRGGQTSKLPQLLKE 577 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------------~~~~~li~~~~~~g~~~~A~~l~~~ 577 (686)
--.++..|-+.-++.++.++++.|.+..+.-+. ...|.....+.+.|.++.|+.++++
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 480
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.78 E-value=6.2e+02 Score=27.43 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=15.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWM 190 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~ 190 (686)
.++..|.+.+++++|+.++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 4566777788888877776655
No 481
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=26.74 E-value=6.6e+02 Score=30.35 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=97.6
Q ss_pred HHHhcCCHHHHHH------HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCCHHHHHH
Q 044251 456 AYSVGGWHEKAYA------AFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMM-------SEKVEGTRVTFNI 522 (686)
Q Consensus 456 ~~~~~g~~~~A~~------~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~~ 522 (686)
.....|.+.+|.+ ++......-.++....|..+...+.+.|+.+.|+..-.+.. ...-+.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3445566666666 55533332234556788899999999999999887655432 1222234445666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC-----CC--CCHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKI-----G--LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN-----IK--PDSV 588 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~-----~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~--pd~~ 588 (686)
+.-.+..++....|...+.+.... | -+|...+++.+-..+...++++.|+++++.+.... -+ .+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 665566677888888877775432 2 13344455555555566688999999999887531 11 2456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHK 611 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~ 611 (686)
++..+.+.+...+++..|....+
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHh
Confidence 67777777777777776665544
No 482
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.23 E-value=3.2e+02 Score=21.37 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=34.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044251 326 LIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVE 396 (686)
Q Consensus 326 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 396 (686)
.++++.+.++|+- +......+-.+-...|+.+.|.+++..+. .|. ..|...+.++...|.-.-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhhh
Confidence 3555555555532 33333333322234567777777777776 432 25666666666666554443
No 483
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.83 E-value=2.8e+02 Score=22.81 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=28.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 241 AISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMR 281 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 281 (686)
+|+.+.+|...++|+++++-|.++| ..+...-+.|-..+.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~ 106 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILV 106 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4566778888899999999998887 555555444444443
No 484
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=6.9e+02 Score=25.12 Aligned_cols=135 Identities=11% Similarity=0.099 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCH
Q 044251 337 IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK-GLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD----MGLEPNA 411 (686)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~p~~ 411 (686)
+..|...++.|... ...++++-.+..+...+. |-.--...+.....-||+.|+-+.|.+.++...+ .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44455555555433 122333333334443332 2111223455567778888888888887776543 4677777
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----hhhHhhhHHHHHhcCCHHHHHHHHHHHHH
Q 044251 412 KSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT----SHSYTALIHAYSVGGWHEKAYAAFENMLR 475 (686)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 475 (686)
..+..-+..+....+...+-++..+.+.+.|...+ ..+|..+- +....++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 77777777666555555666666666666665443 23444432 3344567888888777654
No 485
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.72 E-value=3.7e+02 Score=27.18 Aligned_cols=63 Identities=11% Similarity=0.049 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 287 AKEAWEFFEKMNRKGVKLS----QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAY 351 (686)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 351 (686)
.++.+.++..+++. .|+ ...|..+++.....|.++.++.+|++.+..|..|-......++..+
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 44455555555443 122 2345566666666666667777777777766666555555555554
No 486
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=25.67 E-value=6.4e+02 Score=24.68 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHHcC
Q 044251 462 WHEKAYAAFENMLREE 477 (686)
Q Consensus 462 ~~~~A~~~~~~m~~~~ 477 (686)
+.++|...|....+.|
T Consensus 206 d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 206 DLKKAFRWYKKAAEQG 221 (292)
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4555555555555544
No 487
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=25.55 E-value=2.6e+02 Score=29.30 Aligned_cols=123 Identities=13% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc---
Q 044251 492 FRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQT--- 568 (686)
Q Consensus 492 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--- 568 (686)
+...|++.+|+..|+.++ +.+.+-......+.+++.+++....+ |-.-+..=.....+
T Consensus 214 ~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icrE---------Yilgl~iEl~Rr~l~~~ 274 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICRE---------YILGLSIELERRELPKD 274 (422)
T ss_dssp HHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHCTS-TT
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhcccc
Q ss_pred -----cHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 044251 569 -----SKLPQLLKEMATLNIKPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVK 635 (686)
Q Consensus 569 -----~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~ 635 (686)
...+++---+-..++.|. .-++..-+..+++.+++..|..+-+++++.+ |+........+++.++
T Consensus 275 ~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~--p~~~~a~qArKil~~~ 346 (422)
T PF06957_consen 275 PVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELN--PSPEVAEQARKILQAC 346 (422)
T ss_dssp THHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT----SCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHH
No 488
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.53 E-value=1.7e+02 Score=21.38 Aligned_cols=29 Identities=3% Similarity=0.229 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 044251 272 TCSIMITAMRKNGRSAKEAWEFFEKMNRKG 301 (686)
Q Consensus 272 ~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~ 301 (686)
.++.++..+++..- .++++..+.++.+.|
T Consensus 10 l~~Ql~el~Aed~A-ieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHA-IEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHcC
Confidence 33444443333332 444444444444443
No 489
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.51 E-value=6.3e+02 Score=24.57 Aligned_cols=233 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
.+.+-..=..+.+..+-++|+++-+.++...|..-|...|...+.-..... +.+-+..++++.+..+ .|-++|..-=.
T Consensus 43 r~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~d-L~~El~~l~eI~e~np-KNYQvWHHRr~ 120 (318)
T KOG0530|consen 43 RDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSD-LNKELEYLDEIIEDNP-KNYQVWHHRRV 120 (318)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHH-HHHHHHHHHHHHHhCc-cchhHHHHHHH
Q ss_pred HHHHcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH------HHH
Q 044251 244 GLFWCGRYD-DAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALM------KSF 316 (686)
Q Consensus 244 ~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li------~~~ 316 (686)
..-..|++. .-+++.+.|.... .-+-.+|..---++...+. ++.-+.+..+|++.++. +..+||.-. ...
T Consensus 121 ive~l~d~s~rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~-~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~ 197 (318)
T KOG0530|consen 121 IVELLGDPSFRELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKD-YEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGV 197 (318)
T ss_pred HHHHhcCcccchHHHHHHHHhcc-ccchhhhHHHHHHHHHHhh-HHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCC
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------H
Q 044251 317 CDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQ---LEEAEGLFQEMKTKGLKPTSATFNILMDAY------S 387 (686)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~------~ 387 (686)
...-.++.-+....+++.. ++.+...||-|-..+-.... ......+...+...-..-.......++..| -
T Consensus 198 ~~~~~le~El~yt~~~I~~-vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~ 276 (318)
T KOG0530|consen 198 ISKAELERELNYTKDKILL-VPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAY 276 (318)
T ss_pred ccHHHHHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhc
Q ss_pred hcCCHH---HHHHHHHHH
Q 044251 388 RRMQPE---IVEKLLLEL 402 (686)
Q Consensus 388 ~~~~~~---~a~~~~~~m 402 (686)
+.+.-+ +|.++++.|
T Consensus 277 ~~~~~~~a~~a~~ly~~L 294 (318)
T KOG0530|consen 277 KSSAEELARKAVKLYEDL 294 (318)
T ss_pred cccchHHHHHHHHHHHHH
No 490
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=25.44 E-value=4.5e+02 Score=22.86 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHH
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKV-----EGTRVTFNILLDGFAKQGQ-YLEARDVVSEFGKIGLQPTLMTYNM 557 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ 557 (686)
..+.++.-....+++.....+++.+..... ..+...|.+++.+..+..- --.+..+|.-+.+.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 345566655666666666666666532110 1122344445544433333 2233444444444444445555555
Q ss_pred HHHHHHhc
Q 044251 558 LMNAYGRG 565 (686)
Q Consensus 558 li~~~~~~ 565 (686)
||.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 55554443
No 491
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.35 E-value=2.8e+02 Score=22.77 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=21.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNML 558 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 558 (686)
+++.+.+|...++|+++++-|.+.| ..+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4556667777777777777777666 4454443333
No 492
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=25.30 E-value=1.1e+03 Score=27.49 Aligned_cols=51 Identities=6% Similarity=-0.048 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcC
Q 044251 551 TLMTYNMLMNAYGRGGQTSKLPQLLKEMAT-LNIKPDSVTYSTMIYAFVRVR 601 (686)
Q Consensus 551 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~~~~~li~~~~~~g 601 (686)
|..++..-.+-+...|++..+++++.++.+ .|-.++...|..++..+...|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 444444444444555555555555555543 233444444444554444444
No 493
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.11 E-value=2.9e+02 Score=21.11 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=21.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYN 556 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 556 (686)
+++.+.+|.-.++|+++++-|.+.| ..+...-+
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~ 69 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAK 69 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4556667777777777777777766 44544333
No 494
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=24.92 E-value=2.6e+02 Score=20.16 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=26.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----HcCCHHHHHHH
Q 044251 457 YSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFR-----RSGDTGMMMKI 504 (686)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-----~~g~~~~a~~~ 504 (686)
+...|++=+|-++++.+-.....+....+..+|+..+ +.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4456777777777777765433334455666665442 44555555544
No 495
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.60 E-value=1.9e+02 Score=21.09 Aligned_cols=29 Identities=14% Similarity=-0.017 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
.++.++..+++-.-+++++..+.++.+.|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444443333444444444444333
No 496
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.88 E-value=7.4e+02 Score=26.68 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 044251 269 DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQ 306 (686)
Q Consensus 269 ~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~ 306 (686)
+...+..++..+...+. ...++.++.++++.|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~-~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDN-HSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCCHHH
Confidence 44455555555544433 45677788888877765543
No 497
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=23.38 E-value=3.4e+02 Score=22.15 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 238 YNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 78888888888888888888888866
No 498
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.28 E-value=6.6e+02 Score=23.98 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=16.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 347 LINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD 384 (686)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 384 (686)
++..+-+.|+++++...++++...+...+..--+.+-.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsv 44 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSV 44 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHH
Confidence 33444445555555555555555444444443343333
No 499
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=23.16 E-value=5e+02 Score=22.59 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHhcCCCChHHHHHHH
Q 044251 362 GLFQEMKTKGLKPTSA--TFNILMDAYSRRMQPEIVEKLLLELQDMGL-----EPNAKSYTCLISAYGRPRKMSDMAADA 434 (686)
Q Consensus 362 ~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~~~~~~~A~~~ 434 (686)
+....|.+.+..++.. ..|.++.-....++......+++.+..... ..+...|..++.+.++.....-.+..+
T Consensus 23 ~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~L 102 (145)
T PF13762_consen 23 SHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTL 102 (145)
T ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHH
Q ss_pred HHHHHHcCCCCChhhHhhhHHHHHh
Q 044251 435 FLRMKRVGIKPTSHSYTALIHAYSV 459 (686)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~ 459 (686)
|.-+.+.+.+.+..-|..+|.++.+
T Consensus 103 f~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 103 FNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc
No 500
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=23.07 E-value=3.7e+02 Score=21.03 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 044251 232 FRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKM 297 (686)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m 297 (686)
+.|......+...+...|++++|++.+-++....-.. +...-..|+..+...|.....+.+.=++|
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Done!