Query 044251
Match_columns 686
No_of_seqs 764 out of 3460
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 22:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.6E-36 5.3E-41 337.1 46.8 453 163-632 83-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.8E-36 2.3E-40 332.0 40.8 445 199-682 83-586 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.2E-26 2.1E-30 237.3 49.0 282 309-600 104-386 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.9E-26 1E-30 239.8 45.8 384 170-567 5-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.7E-28 5.9E-33 261.7 26.9 209 426-634 4-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 5.7E-28 1.9E-32 257.7 26.1 205 219-423 9-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 3E-23 1E-27 225.4 38.2 454 164-632 6-492 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 6.7E-21 2.3E-25 203.2 42.0 339 184-559 12-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 4.3E-22 1.5E-26 216.2 31.9 446 201-682 7-485 (514)
10 3fp2_A TPR repeat-containing p 99.9 2.5E-21 8.6E-26 211.5 38.2 432 163-617 24-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.1E-21 1.1E-25 205.7 37.5 368 269-679 25-414 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.1E-19 3.8E-24 198.4 37.4 437 200-681 25-497 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 3.1E-17 1E-21 168.6 42.7 328 271-632 4-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 3.1E-17 1.1E-21 168.6 40.3 315 200-546 3-335 (359)
15 2xm6_A Protein corresponding t 99.8 5.3E-15 1.8E-19 159.3 53.6 354 233-618 37-434 (490)
16 2xm6_A Protein corresponding t 99.8 2.7E-15 9.4E-20 161.5 49.9 353 199-583 38-434 (490)
17 2ooe_A Cleavage stimulation fa 99.8 6E-16 2E-20 168.5 44.4 405 201-616 14-492 (530)
18 3hym_B Cell division cycle pro 99.8 1.3E-16 4.3E-21 162.0 31.7 141 453-597 165-314 (330)
19 3hym_B Cell division cycle pro 99.8 1.2E-16 4.1E-21 162.2 30.4 287 341-634 22-316 (330)
20 2ooe_A Cleavage stimulation fa 99.8 3.2E-15 1.1E-19 162.7 43.1 409 162-581 11-492 (530)
21 1xi4_A Clathrin heavy chain; a 99.8 2.8E-14 9.4E-19 161.0 50.3 410 160-633 981-1412(1630)
22 1fch_A Peroxisomal targeting s 99.8 5.4E-17 1.9E-21 167.7 26.7 309 279-614 34-357 (368)
23 1fch_A Peroxisomal targeting s 99.8 3.7E-17 1.3E-21 169.0 25.1 309 244-579 34-357 (368)
24 4eqf_A PEX5-related protein; a 99.7 3.2E-16 1.1E-20 161.9 26.4 277 305-612 64-352 (365)
25 3cv0_A Peroxisome targeting si 99.7 1.5E-15 5.3E-20 153.7 27.4 280 306-614 21-313 (327)
26 4eqf_A PEX5-related protein; a 99.7 1.2E-15 4.2E-20 157.4 26.7 276 269-577 64-352 (365)
27 4g1t_A Interferon-induced prot 99.7 1.4E-14 4.7E-19 155.3 34.8 384 200-617 51-460 (472)
28 4g1t_A Interferon-induced prot 99.7 2.8E-14 9.5E-19 152.9 36.4 385 270-683 51-467 (472)
29 3cv0_A Peroxisome targeting si 99.7 5.7E-15 1.9E-19 149.5 28.9 279 271-579 22-313 (327)
30 3spa_A Mtrpol, DNA-directed RN 99.7 8E-17 2.7E-21 176.1 14.6 151 305-461 126-286 (1134)
31 3mkr_A Coatomer subunit epsilo 99.7 8.1E-15 2.8E-19 145.7 26.8 259 171-444 6-267 (291)
32 3mkr_A Coatomer subunit epsilo 99.7 8.6E-15 2.9E-19 145.5 26.5 131 446-580 129-263 (291)
33 1xi4_A Clathrin heavy chain; a 99.7 1.2E-12 4.1E-17 147.9 45.4 345 165-572 1023-1375(1630)
34 1b89_A Protein (clathrin heavy 99.7 2.6E-15 9E-20 152.5 21.6 282 176-503 15-303 (449)
35 1b89_A Protein (clathrin heavy 99.7 5.6E-16 1.9E-20 157.5 15.6 284 211-540 14-305 (449)
36 3spa_A Mtrpol, DNA-directed RN 99.7 2.1E-16 7.1E-21 172.8 11.0 118 447-564 127-248 (1134)
37 3uq3_A Heat shock protein STI1 99.6 1.3E-13 4.4E-18 134.2 24.5 232 341-616 5-236 (258)
38 3uq3_A Heat shock protein STI1 99.6 5.2E-13 1.8E-17 129.9 25.8 225 306-580 5-235 (258)
39 3e4b_A ALGK; tetratricopeptide 99.6 1.6E-13 5.4E-18 145.6 21.6 348 169-580 8-386 (452)
40 2pl2_A Hypothetical conserved 99.6 2.2E-13 7.6E-18 129.0 20.4 207 164-402 5-211 (217)
41 3e4b_A ALGK; tetratricopeptide 99.6 2.4E-13 8.1E-18 144.2 22.7 319 165-547 36-388 (452)
42 2pl2_A Hypothetical conserved 99.6 4.9E-13 1.7E-17 126.7 22.0 200 233-440 3-213 (217)
43 3u4t_A TPR repeat-containing p 99.5 2.4E-12 8.2E-17 126.4 25.4 240 344-623 6-255 (272)
44 1ouv_A Conserved hypothetical 99.5 2.3E-11 7.7E-16 119.7 31.8 224 340-617 5-252 (273)
45 1ouv_A Conserved hypothetical 99.5 3.2E-11 1.1E-15 118.6 32.0 224 163-406 5-252 (273)
46 2ho1_A Type 4 fimbrial biogene 99.5 5.9E-12 2E-16 122.1 26.0 206 413-625 39-245 (252)
47 3u4t_A TPR repeat-containing p 99.5 4.2E-12 1.4E-16 124.7 24.6 237 164-406 3-251 (272)
48 2ho1_A Type 4 fimbrial biogene 99.5 8.8E-12 3E-16 120.8 26.5 200 164-369 37-237 (252)
49 2h6f_A Protein farnesyltransfe 99.5 3.4E-12 1.2E-16 131.2 24.4 234 163-405 96-348 (382)
50 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-12 4.3E-17 125.9 19.7 204 160-370 19-222 (243)
51 2vq2_A PILW, putative fimbrial 99.5 2.5E-11 8.4E-16 115.1 27.2 200 201-404 9-210 (225)
52 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.3E-12 4.5E-17 128.5 18.8 222 378-610 45-269 (275)
53 2h6f_A Protein farnesyltransfe 99.5 1.2E-11 4.1E-16 127.1 26.2 159 233-395 95-254 (382)
54 2q7f_A YRRB protein; TPR, prot 99.5 4.1E-12 1.4E-16 122.3 21.7 200 412-617 24-223 (243)
55 2vq2_A PILW, putative fimbrial 99.5 1.7E-11 5.9E-16 116.2 25.7 203 416-624 13-217 (225)
56 4e6h_A MRNA 3'-END-processing 99.5 7.9E-10 2.7E-14 121.2 41.8 444 180-632 48-584 (679)
57 4a1s_A PINS, partner of inscut 99.4 2.7E-12 9.1E-17 134.6 18.2 278 307-616 49-372 (411)
58 1xnf_A Lipoprotein NLPI; TPR, 99.4 8.5E-12 2.9E-16 122.6 20.6 196 272-475 45-243 (275)
59 3sf4_A G-protein-signaling mod 99.4 7.6E-12 2.6E-16 130.6 20.9 299 304-634 7-359 (406)
60 3sf4_A G-protein-signaling mod 99.4 5.2E-12 1.8E-16 131.9 18.8 305 267-604 6-364 (406)
61 3vtx_A MAMA; tetratricopeptide 99.4 4.5E-11 1.5E-15 109.7 22.9 168 446-617 4-171 (184)
62 4e6h_A MRNA 3'-END-processing 99.4 3.1E-09 1E-13 116.6 40.8 429 160-597 62-584 (679)
63 3ro2_A PINS homolog, G-protein 99.4 8.5E-12 2.9E-16 126.2 19.1 277 308-616 7-332 (338)
64 4a1s_A PINS, partner of inscut 99.4 7.2E-12 2.5E-16 131.3 18.2 278 271-581 49-372 (411)
65 2ond_A Cleavage stimulation fa 99.4 1.7E-10 5.7E-15 115.7 26.2 218 181-405 33-270 (308)
66 2ond_A Cleavage stimulation fa 99.4 2.6E-10 9E-15 114.2 26.3 218 393-616 33-270 (308)
67 3ro2_A PINS homolog, G-protein 99.3 2.5E-11 8.7E-16 122.7 18.9 278 271-581 6-332 (338)
68 3ulq_A Response regulator aspa 99.3 6.5E-11 2.2E-15 122.8 22.2 167 447-616 184-368 (383)
69 4abn_A Tetratricopeptide repea 99.3 3.2E-11 1.1E-15 128.6 20.0 216 179-402 83-318 (474)
70 3vtx_A MAMA; tetratricopeptide 99.3 3.7E-10 1.3E-14 103.5 23.8 168 233-405 3-170 (184)
71 3nf1_A KLC 1, kinesin light ch 99.3 2.5E-11 8.5E-16 121.5 15.8 246 340-616 26-307 (311)
72 4abn_A Tetratricopeptide repea 99.3 9.4E-11 3.2E-15 125.0 21.1 213 393-612 85-317 (474)
73 3ulq_A Response regulator aspa 99.3 3.8E-10 1.3E-14 117.0 23.2 130 448-580 225-367 (383)
74 3as5_A MAMA; tetratricopeptide 99.3 4.8E-10 1.6E-14 102.4 20.3 166 447-616 8-173 (186)
75 3nf1_A KLC 1, kinesin light ch 99.3 4.9E-11 1.7E-15 119.3 14.3 170 234-404 26-223 (311)
76 1hz4_A MALT regulatory protein 99.2 3.7E-09 1.3E-13 109.0 28.1 274 310-615 18-321 (373)
77 4gyw_A UDP-N-acetylglucosamine 99.2 4.4E-10 1.5E-14 124.8 21.5 165 446-615 8-173 (723)
78 4i17_A Hypothetical protein; T 99.2 1.8E-09 6.2E-14 102.7 21.9 200 410-623 6-214 (228)
79 3as5_A MAMA; tetratricopeptide 99.2 3.7E-09 1.3E-13 96.4 22.8 164 201-369 9-172 (186)
80 1hz4_A MALT regulatory protein 99.2 1E-08 3.5E-13 105.6 28.5 302 275-617 19-350 (373)
81 3q15_A PSP28, response regulat 99.2 3.8E-09 1.3E-13 109.2 24.5 166 447-615 182-364 (378)
82 4i17_A Hypothetical protein; T 99.2 5.5E-09 1.9E-13 99.3 22.5 201 446-682 6-216 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.1 1.8E-09 6.2E-14 119.8 21.1 165 234-403 8-172 (723)
84 3q15_A PSP28, response regulat 99.1 1.6E-08 5.4E-13 104.5 26.2 199 378-580 143-364 (378)
85 3edt_B KLC 2, kinesin light ch 99.1 8E-10 2.8E-14 108.6 15.0 228 388-616 13-281 (283)
86 3urz_A Uncharacterized protein 99.0 1.3E-08 4.4E-13 95.3 18.6 172 450-631 7-199 (208)
87 2fo7_A Synthetic consensus TPR 99.0 3E-08 1E-12 84.7 17.9 129 485-616 4-132 (136)
88 3edt_B KLC 2, kinesin light ch 99.0 3.3E-09 1.1E-13 104.1 13.3 158 176-334 13-197 (283)
89 2uy1_A Cleavage stimulation fa 99.0 8.5E-07 2.9E-11 94.3 31.7 374 180-615 11-412 (493)
90 2fo7_A Synthetic consensus TPR 98.9 5.5E-08 1.9E-12 83.0 17.5 130 449-581 3-132 (136)
91 3dra_A Protein farnesyltransfe 98.9 3E-07 1E-11 90.5 24.1 232 166-404 34-286 (306)
92 3qky_A Outer membrane assembly 98.9 5.6E-08 1.9E-12 94.5 18.9 172 446-623 14-229 (261)
93 1qqe_A Vesicular transport pro 98.9 5.3E-08 1.8E-12 96.5 18.7 96 308-403 119-226 (292)
94 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.2E-08 2.1E-12 91.8 18.0 196 446-686 3-224 (225)
95 3mv2_B Coatomer subunit epsilo 98.9 3.9E-07 1.3E-11 88.7 23.6 246 352-624 24-288 (310)
96 3qky_A Outer membrane assembly 98.9 5.6E-08 1.9E-12 94.5 17.9 213 162-395 13-251 (261)
97 1qqe_A Vesicular transport pro 98.9 6.7E-08 2.3E-12 95.7 18.6 206 391-614 32-267 (292)
98 3urz_A Uncharacterized protein 98.9 5.9E-08 2E-12 90.7 16.4 194 163-384 3-198 (208)
99 3rjv_A Putative SEL1 repeat pr 98.8 2.1E-07 7.3E-12 87.1 19.6 177 430-618 4-199 (212)
100 2uy1_A Cleavage stimulation fa 98.8 2.1E-06 7E-11 91.4 29.3 366 212-632 6-394 (493)
101 2r5s_A Uncharacterized protein 98.8 4.2E-08 1.4E-12 89.0 13.7 78 290-368 93-171 (176)
102 4ga2_A E3 SUMO-protein ligase 98.8 2.5E-08 8.5E-13 87.7 11.5 141 455-601 5-148 (150)
103 2pzi_A Probable serine/threoni 98.8 1.9E-08 6.7E-13 112.1 13.1 172 211-390 402-582 (681)
104 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.1E-07 1.4E-11 86.1 20.1 185 411-617 4-214 (225)
105 3mv2_B Coatomer subunit epsilo 98.8 6.3E-07 2.1E-11 87.3 21.3 162 416-586 105-285 (310)
106 3dra_A Protein farnesyltransfe 98.8 1.9E-06 6.6E-11 84.7 25.1 219 252-475 50-286 (306)
107 2vsy_A XCC0866; transferase, g 98.8 1.4E-07 4.7E-12 103.2 18.9 150 429-582 6-158 (568)
108 2r5s_A Uncharacterized protein 98.8 6.5E-08 2.2E-12 87.7 13.3 163 449-615 8-172 (176)
109 3qou_A Protein YBBN; thioredox 98.8 1.7E-07 5.9E-12 92.4 17.3 163 446-614 116-282 (287)
110 2pzi_A Probable serine/threoni 98.8 6.6E-08 2.3E-12 107.8 15.6 173 422-602 402-583 (681)
111 3qou_A Protein YBBN; thioredox 98.8 1.9E-07 6.6E-12 92.1 16.9 165 163-332 116-281 (287)
112 3gyz_A Chaperone protein IPGC; 98.7 6.9E-08 2.4E-12 84.6 10.5 111 516-631 35-146 (151)
113 3rjv_A Putative SEL1 repeat pr 98.7 1.5E-06 5.3E-11 81.2 19.9 175 219-406 5-198 (212)
114 3q7a_A Farnesyltransferase alp 98.7 4.6E-06 1.6E-10 82.9 24.0 229 169-404 58-330 (349)
115 2vsy_A XCC0866; transferase, g 98.6 8.9E-07 3E-11 96.7 19.8 155 177-337 2-159 (568)
116 4ga2_A E3 SUMO-protein ligase 98.6 2.5E-07 8.6E-12 81.2 12.3 136 428-567 13-149 (150)
117 2qfc_A PLCR protein; TPR, HTH, 98.6 6.9E-06 2.3E-10 81.1 23.9 169 447-615 75-265 (293)
118 4f3v_A ESX-1 secretion system 98.6 1.1E-06 3.8E-11 84.3 17.3 189 176-370 18-237 (282)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.7E-06 5.9E-11 80.7 18.5 126 487-617 11-151 (213)
120 3u3w_A Transcriptional activat 98.6 1.9E-06 6.4E-11 85.2 19.4 208 398-615 33-265 (293)
121 2ifu_A Gamma-SNAP; membrane fu 98.6 5E-07 1.7E-11 90.1 15.1 158 456-614 45-222 (307)
122 2ifu_A Gamma-SNAP; membrane fu 98.6 4.9E-07 1.7E-11 90.2 15.0 156 448-608 77-253 (307)
123 4gco_A Protein STI-1; structur 98.6 1.3E-06 4.3E-11 74.0 15.2 111 517-631 13-124 (126)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.1E-06 7.1E-11 80.2 17.5 132 449-587 8-154 (213)
125 1a17_A Serine/threonine protei 98.6 2.3E-06 8E-11 76.0 17.0 129 483-614 14-144 (166)
126 3q7a_A Farnesyltransferase alp 98.6 2.2E-05 7.4E-10 78.1 24.7 185 201-391 55-257 (349)
127 2vgx_A Chaperone SYCD; alterna 98.5 4.8E-07 1.6E-11 79.2 11.4 110 504-617 9-119 (148)
128 3gw4_A Uncharacterized protein 98.5 7.1E-07 2.4E-11 82.5 12.8 158 458-616 3-176 (203)
129 1a17_A Serine/threonine protei 98.5 3.4E-06 1.2E-10 74.9 16.8 130 447-579 13-144 (166)
130 3dss_A Geranylgeranyl transfer 98.5 3.7E-05 1.3E-09 76.0 25.4 176 170-351 35-237 (331)
131 4gco_A Protein STI-1; structur 98.5 3.7E-06 1.3E-10 71.1 15.5 94 485-580 16-109 (126)
132 2e2e_A Formate-dependent nitri 98.5 1.3E-06 4.6E-11 78.8 13.3 122 493-617 21-145 (177)
133 4gcn_A Protein STI-1; structur 98.5 2.1E-06 7.2E-11 72.7 13.4 112 517-631 8-125 (127)
134 1na0_A Designed protein CTPR3; 98.5 5.9E-06 2E-10 69.0 16.2 94 520-615 12-105 (125)
135 2vyi_A SGTA protein; chaperone 98.5 5.9E-06 2E-10 69.7 16.2 117 448-567 13-129 (131)
136 1na0_A Designed protein CTPR3; 98.5 7.3E-06 2.5E-10 68.4 16.5 112 484-598 11-122 (125)
137 2vyi_A SGTA protein; chaperone 98.4 5E-06 1.7E-10 70.1 14.9 117 483-602 13-129 (131)
138 3u3w_A Transcriptional activat 98.4 9.6E-06 3.3E-10 80.1 19.2 165 238-403 78-264 (293)
139 3gyz_A Chaperone protein IPGC; 98.4 3.7E-06 1.3E-10 73.5 14.1 102 483-588 37-138 (151)
140 4f3v_A ESX-1 secretion system 98.4 4.9E-06 1.7E-10 79.9 16.0 140 484-628 104-247 (282)
141 1p5q_A FKBP52, FK506-binding p 98.4 6.7E-06 2.3E-10 82.9 17.0 131 482-615 147-293 (336)
142 2c2l_A CHIP, carboxy terminus 98.4 1.5E-06 5.1E-11 85.3 11.8 99 163-264 3-101 (281)
143 2lni_A Stress-induced-phosphop 98.4 4.6E-06 1.6E-10 70.8 13.4 97 517-615 16-112 (133)
144 1p5q_A FKBP52, FK506-binding p 98.4 6.7E-06 2.3E-10 82.9 16.2 132 446-579 146-292 (336)
145 2lni_A Stress-induced-phosphop 98.4 6E-06 2.1E-10 70.0 13.6 115 483-601 17-132 (133)
146 2e2e_A Formate-dependent nitri 98.4 1.9E-06 6.4E-11 77.9 10.8 122 457-581 20-144 (177)
147 2qfc_A PLCR protein; TPR, HTH, 98.4 2.3E-05 7.9E-10 77.3 19.5 61 308-368 198-264 (293)
148 2xcb_A PCRH, regulatory protei 98.3 3.4E-06 1.2E-10 73.0 11.1 99 516-616 17-115 (142)
149 3upv_A Heat shock protein STI1 98.3 1.3E-05 4.5E-10 67.5 14.4 97 517-616 4-101 (126)
150 3gw4_A Uncharacterized protein 98.3 5.3E-06 1.8E-10 76.5 12.9 154 212-367 4-173 (203)
151 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-06 3.9E-11 81.1 7.7 121 484-607 40-176 (198)
152 2vgx_A Chaperone SYCD; alterna 98.3 3E-06 1E-10 74.0 9.7 97 482-580 21-117 (148)
153 2c2l_A CHIP, carboxy terminus 98.3 1.7E-05 6E-10 77.6 15.8 98 305-404 3-100 (281)
154 1elr_A TPR2A-domain of HOP; HO 98.3 1.6E-05 5.3E-10 67.0 13.6 113 517-632 4-122 (131)
155 3upv_A Heat shock protein STI1 98.3 2.1E-05 7.3E-10 66.2 14.4 96 483-580 5-100 (126)
156 1elw_A TPR1-domain of HOP; HOP 98.2 4.8E-05 1.7E-09 62.5 16.1 94 485-580 7-100 (118)
157 1elw_A TPR1-domain of HOP; HOP 98.2 4.1E-05 1.4E-09 62.9 15.6 111 517-630 4-114 (118)
158 4gcn_A Protein STI-1; structur 98.2 2.1E-05 7.3E-10 66.4 13.6 103 485-590 11-119 (127)
159 3dss_A Geranylgeranyl transfer 98.2 0.0017 5.9E-08 64.1 28.7 173 212-389 41-240 (331)
160 3q49_B STIP1 homology and U bo 98.2 2.9E-05 9.8E-10 66.3 14.2 101 514-616 6-106 (137)
161 3sz7_A HSC70 cochaperone (SGT) 98.2 3.8E-05 1.3E-09 68.1 15.2 99 516-616 10-108 (164)
162 2fbn_A 70 kDa peptidylprolyl i 98.2 2.3E-05 7.8E-10 72.2 14.1 132 447-580 38-185 (198)
163 2kck_A TPR repeat; tetratricop 98.2 1.2E-05 4E-10 65.7 10.5 99 517-617 6-107 (112)
164 1elr_A TPR2A-domain of HOP; HO 98.2 1.9E-05 6.5E-10 66.5 12.0 108 485-595 7-120 (131)
165 3q49_B STIP1 homology and U bo 98.1 4.9E-05 1.7E-09 64.8 14.4 99 480-580 7-105 (137)
166 2xcb_A PCRH, regulatory protei 98.1 2.9E-05 9.8E-10 67.1 12.9 96 483-580 19-114 (142)
167 2dba_A Smooth muscle cell asso 98.1 9.9E-05 3.4E-09 63.7 16.1 98 446-546 27-128 (148)
168 1hxi_A PEX5, peroxisome target 98.1 2.1E-05 7.4E-10 65.7 11.1 94 520-616 20-114 (121)
169 1hxi_A PEX5, peroxisome target 98.1 1.2E-05 4.1E-10 67.3 9.5 95 167-264 20-114 (121)
170 3sz7_A HSC70 cochaperone (SGT) 98.1 4.1E-05 1.4E-09 67.9 13.3 98 482-581 11-108 (164)
171 4b4t_Q 26S proteasome regulato 98.1 0.0001 3.4E-09 77.1 17.7 217 167-404 7-244 (434)
172 2kck_A TPR repeat; tetratricop 98.1 7.5E-05 2.6E-09 60.7 13.3 97 447-545 6-105 (112)
173 3ro3_A PINS homolog, G-protein 98.0 3.2E-05 1.1E-09 67.9 11.3 98 519-616 51-158 (164)
174 4b4t_Q 26S proteasome regulato 98.0 0.00037 1.3E-08 72.7 21.5 195 350-544 13-243 (434)
175 2dba_A Smooth muscle cell asso 98.0 0.00012 4.2E-09 63.1 14.8 99 515-616 26-128 (148)
176 2xev_A YBGF; tetratricopeptide 98.0 0.00011 3.9E-09 61.7 13.5 98 522-624 7-111 (129)
177 3rkv_A Putative peptidylprolyl 98.0 6E-05 2.1E-09 66.6 12.1 102 519-623 13-131 (162)
178 1zu2_A Mitochondrial import re 98.0 5E-05 1.7E-09 65.6 10.7 99 529-632 14-134 (158)
179 1wao_1 Serine/threonine protei 98.0 1.6E-05 5.5E-10 84.3 9.0 126 448-576 7-134 (477)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 9.8E-05 3.3E-09 77.8 14.3 96 517-615 317-414 (457)
181 3ro3_A PINS homolog, G-protein 97.9 7.2E-05 2.5E-09 65.5 11.0 134 447-580 9-157 (164)
182 2xev_A YBGF; tetratricopeptide 97.9 0.00029 9.9E-09 59.1 14.3 90 489-580 9-104 (129)
183 1ihg_A Cyclophilin 40; ppiase 97.9 0.00014 4.8E-09 74.1 14.0 89 516-607 272-361 (370)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00015 5.2E-09 76.3 14.7 131 447-579 268-413 (457)
185 2hr2_A Hypothetical protein; a 97.9 0.00021 7.2E-09 61.8 12.7 98 519-616 13-131 (159)
186 3rkv_A Putative peptidylprolyl 97.9 0.00017 6E-09 63.6 12.8 68 516-586 62-129 (162)
187 1wao_1 Serine/threonine protei 97.9 3.6E-05 1.2E-09 81.6 9.6 119 489-611 13-134 (477)
188 3k9i_A BH0479 protein; putativ 97.8 3.7E-05 1.3E-09 63.7 7.4 83 531-615 4-89 (117)
189 1ihg_A Cyclophilin 40; ppiase 97.8 0.00018 6.1E-09 73.3 13.4 123 449-573 225-362 (370)
190 1dce_A Protein (RAB geranylger 97.8 0.00056 1.9E-08 73.8 17.6 143 171-318 35-190 (567)
191 3k9i_A BH0479 protein; putativ 97.8 6.5E-05 2.2E-09 62.2 8.0 84 496-580 4-89 (117)
192 2if4_A ATFKBP42; FKBP-like, al 97.7 6.4E-05 2.2E-09 75.7 8.6 95 519-616 232-328 (338)
193 1klx_A Cysteine rich protein B 97.7 0.00081 2.8E-08 57.5 14.4 111 496-617 9-127 (138)
194 1dce_A Protein (RAB geranylger 97.7 0.0008 2.7E-08 72.6 17.6 173 425-603 42-242 (567)
195 2if4_A ATFKBP42; FKBP-like, al 97.7 9.7E-05 3.3E-09 74.4 8.8 155 482-682 179-335 (338)
196 3n71_A Histone lysine methyltr 97.7 0.00016 5.4E-09 76.1 10.7 65 234-299 350-421 (490)
197 2hr2_A Hypothetical protein; a 97.7 0.0006 2E-08 59.0 12.4 61 519-580 59-130 (159)
198 3n71_A Histone lysine methyltr 97.5 0.00025 8.7E-09 74.6 10.3 53 457-509 319-378 (490)
199 2l6j_A TPR repeat-containing p 97.5 7E-05 2.4E-09 61.0 4.7 62 518-580 5-66 (111)
200 1klx_A Cysteine rich protein B 97.5 0.0036 1.2E-07 53.3 15.1 110 250-371 10-127 (138)
201 2l6j_A TPR repeat-containing p 97.5 0.00021 7.1E-09 58.1 6.8 93 482-576 4-102 (111)
202 1zu2_A Mitochondrial import re 97.5 0.0003 1E-08 60.7 7.7 97 494-594 14-131 (158)
203 2kat_A Uncharacterized protein 97.4 0.00089 3.1E-08 54.9 10.3 79 536-616 4-82 (115)
204 2kat_A Uncharacterized protein 97.4 0.0014 4.8E-08 53.7 11.2 80 500-581 3-82 (115)
205 1na3_A Designed protein CTPR2; 97.3 0.002 6.9E-08 49.8 10.8 61 519-580 11-71 (91)
206 1na3_A Designed protein CTPR2; 97.3 0.0026 8.9E-08 49.1 11.4 81 483-565 10-90 (91)
207 3ma5_A Tetratricopeptide repea 97.1 0.0016 5.6E-08 51.8 8.4 80 551-632 6-87 (100)
208 3ly7_A Transcriptional activat 97.1 0.0086 2.9E-07 59.3 14.5 80 549-632 274-353 (372)
209 3ma5_A Tetratricopeptide repea 97.0 0.0032 1.1E-07 50.1 8.7 66 514-580 4-69 (100)
210 1pc2_A Mitochondria fission pr 96.7 0.017 5.8E-07 49.2 10.9 101 532-636 13-118 (152)
211 3ly7_A Transcriptional activat 96.6 0.05 1.7E-06 53.9 15.5 141 446-592 193-348 (372)
212 3qwp_A SET and MYND domain-con 96.6 0.0047 1.6E-07 63.9 8.3 88 211-299 298-399 (429)
213 3qww_A SET and MYND domain-con 96.5 0.0095 3.2E-07 61.5 10.5 86 530-615 311-410 (433)
214 3qwp_A SET and MYND domain-con 96.5 0.02 6.9E-07 59.1 13.0 109 524-632 294-419 (429)
215 3qww_A SET and MYND domain-con 96.5 0.0049 1.7E-07 63.6 8.0 86 213-299 311-410 (433)
216 2kc7_A BFR218_protein; tetratr 96.2 0.0092 3.1E-07 46.9 6.5 54 526-580 9-63 (99)
217 2v5f_A Prolyl 4-hydroxylase su 96.1 0.021 7.2E-07 45.6 8.2 74 161-264 2-75 (104)
218 3bee_A Putative YFRE protein; 96.0 0.11 3.6E-06 40.4 11.5 67 549-617 3-73 (93)
219 2kc7_A BFR218_protein; tetratr 95.8 0.085 2.9E-06 41.1 10.6 55 491-546 9-64 (99)
220 3mkq_A Coatomer beta'-subunit; 95.7 0.21 7.3E-06 56.4 17.6 156 171-367 606-762 (814)
221 3mkq_A Coatomer beta'-subunit; 95.6 0.37 1.3E-05 54.3 19.0 107 164-299 629-735 (814)
222 3bee_A Putative YFRE protein; 95.5 0.058 2E-06 41.9 8.2 67 514-581 3-72 (93)
223 1nzn_A CGI-135 protein, fissio 95.3 0.13 4.4E-06 42.1 9.7 102 527-632 11-117 (126)
224 3mkq_B Coatomer subunit alpha; 95.2 1.4 4.8E-05 38.4 16.6 102 171-295 12-113 (177)
225 3u64_A Protein TP_0956; tetrat 95.0 1.5 5E-05 41.7 17.4 84 252-338 180-272 (301)
226 3u64_A Protein TP_0956; tetrat 95.0 0.079 2.7E-06 50.3 8.8 88 180-267 179-272 (301)
227 2v5f_A Prolyl 4-hydroxylase su 95.0 0.18 6.1E-06 40.0 9.8 71 551-623 4-80 (104)
228 3mkq_B Coatomer subunit alpha; 94.9 0.77 2.6E-05 40.0 14.2 45 458-508 16-60 (177)
229 1pc2_A Mitochondria fission pr 94.6 0.23 7.9E-06 42.2 9.7 81 323-405 15-100 (152)
230 1wy6_A Hypothetical protein ST 94.2 2 6.8E-05 35.3 15.6 140 457-618 17-156 (172)
231 1wy6_A Hypothetical protein ST 94.0 2.1 7.2E-05 35.1 13.7 66 518-584 92-157 (172)
232 4h7y_A Dual specificity protei 92.3 2.6 8.9E-05 35.4 11.9 112 446-560 12-136 (161)
233 4h7y_A Dual specificity protei 92.2 0.75 2.6E-05 38.6 8.6 66 566-633 74-139 (161)
234 4gns_B Protein CSD3, chitin bi 91.1 0.86 2.9E-05 50.0 10.4 129 237-368 250-398 (754)
235 3txn_A 26S proteasome regulato 91.1 14 0.00047 37.1 24.0 246 379-629 22-296 (394)
236 1nzn_A CGI-135 protein, fissio 90.8 1.9 6.6E-05 35.1 9.7 91 176-270 13-107 (126)
237 2wpv_A GET4, UPF0363 protein Y 90.8 12 0.00042 36.0 17.3 129 170-329 19-157 (312)
238 4ady_A RPN2, 26S proteasome re 90.7 25 0.00086 39.4 30.5 90 167-263 148-258 (963)
239 4ady_A RPN2, 26S proteasome re 90.4 26 0.0009 39.3 37.1 265 350-626 383-665 (963)
240 2ff4_A Probable regulatory pro 90.3 5.2 0.00018 40.3 14.9 116 174-309 125-248 (388)
241 1y8m_A FIS1; mitochondria, unk 90.3 7 0.00024 32.5 13.3 83 549-633 36-121 (144)
242 2ff4_A Probable regulatory pro 90.0 1.5 5.2E-05 44.3 10.6 76 556-632 175-255 (388)
243 3o48_A Mitochondria fission 1 89.6 4 0.00014 33.4 10.6 85 547-633 35-122 (134)
244 4b4t_P 26S proteasome regulato 89.5 17 0.00057 37.3 18.2 268 320-614 30-322 (445)
245 3lpz_A GET4 (YOR164C homolog); 88.7 18 0.00062 35.1 20.0 184 171-404 19-215 (336)
246 4gns_B Protein CSD3, chitin bi 88.5 2.8 9.6E-05 46.0 11.8 129 379-508 251-397 (754)
247 4fhn_B Nucleoporin NUP120; pro 86.8 29 0.00099 40.6 20.0 170 202-394 814-989 (1139)
248 3txn_A 26S proteasome regulato 85.0 12 0.00041 37.5 13.4 67 557-623 104-177 (394)
249 4fhn_B Nucleoporin NUP120; pro 84.9 22 0.00074 41.7 17.6 149 452-607 817-991 (1139)
250 1v54_E Cytochrome C oxidase po 84.3 4.2 0.00014 31.3 7.2 62 570-632 28-89 (109)
251 3lvg_A Clathrin heavy chain 1; 81.9 0.0012 4E-08 66.7 -16.8 224 163-424 53-276 (624)
252 1qsa_A Protein (soluble lytic 81.7 60 0.002 34.7 37.6 94 201-300 73-167 (618)
253 3o48_A Mitochondria fission 1 80.7 12 0.00042 30.6 9.3 72 198-271 38-112 (134)
254 1y8m_A FIS1; mitochondria, unk 79.0 26 0.0009 29.0 11.1 71 198-270 37-110 (144)
255 3ffl_A Anaphase-promoting comp 78.5 17 0.00059 31.1 9.9 62 165-226 21-89 (167)
256 3ffl_A Anaphase-promoting comp 77.8 8.9 0.0003 32.8 8.0 29 165-193 64-92 (167)
257 2y69_E Cytochrome C oxidase su 77.6 8.4 0.00029 31.5 7.2 62 570-632 71-132 (152)
258 1v54_E Cytochrome C oxidase po 77.3 23 0.00078 27.4 9.9 47 289-335 28-74 (109)
259 1zbp_A Hypothetical protein VP 76.1 18 0.00061 33.8 10.2 116 560-680 5-134 (273)
260 2p58_C Putative type III secre 70.3 30 0.001 26.6 8.2 79 320-406 21-99 (116)
261 1zbp_A Hypothetical protein VP 69.9 72 0.0024 29.7 13.7 114 492-616 7-129 (273)
262 2y69_E Cytochrome C oxidase su 69.8 44 0.0015 27.3 9.9 47 289-335 71-117 (152)
263 4b4t_P 26S proteasome regulato 67.7 1.1E+02 0.0038 31.1 21.3 46 390-436 30-80 (445)
264 3lpz_A GET4 (YOR164C homolog); 66.7 96 0.0033 30.0 23.4 26 374-399 134-159 (336)
265 2uwj_G Type III export protein 65.4 29 0.001 26.6 7.3 78 321-406 21-98 (115)
266 3eiq_C Programmed cell death p 65.1 89 0.003 30.6 13.0 67 520-587 220-288 (358)
267 4b4t_R RPN7, 26S proteasome re 64.2 29 0.00098 35.3 9.9 98 448-545 132-236 (429)
268 2wpv_A GET4, UPF0363 protein Y 62.7 1.1E+02 0.0038 29.3 22.5 127 399-544 80-215 (312)
269 2uwj_G Type III export protein 62.6 50 0.0017 25.3 10.5 86 178-273 20-105 (115)
270 3esl_A Checkpoint serine/threo 62.4 57 0.002 28.8 9.9 55 531-585 93-148 (202)
271 2p58_C Putative type III secre 62.2 51 0.0018 25.3 11.1 86 178-273 21-106 (116)
272 4b4t_R RPN7, 26S proteasome re 61.8 46 0.0016 33.8 10.9 118 463-580 110-236 (429)
273 3esl_A Checkpoint serine/threo 61.5 87 0.003 27.7 12.6 52 569-620 96-148 (202)
274 3e3v_A Regulatory protein RECX 60.1 59 0.002 28.2 9.7 50 534-584 50-99 (177)
275 3ltm_A Alpha-REP4; protein eng 53.8 1.1E+02 0.0039 26.7 19.5 167 201-388 34-200 (211)
276 3eiq_C Programmed cell death p 52.8 46 0.0016 32.7 8.6 74 166-243 56-131 (358)
277 1oyz_A Hypothetical protein YI 50.5 1.6E+02 0.0053 27.3 21.2 137 479-631 139-276 (280)
278 3ltm_A Alpha-REP4; protein eng 49.8 1.3E+02 0.0045 26.3 18.3 171 233-424 31-201 (211)
279 3ltj_A Alpharep-4; protein eng 49.7 1.3E+02 0.0044 26.1 19.0 108 201-321 29-136 (201)
280 3ltj_A Alpharep-4; protein eng 49.6 1.3E+02 0.0044 26.1 18.9 169 163-353 27-195 (201)
281 2wvi_A Mitotic checkpoint seri 49.6 75 0.0026 27.1 8.3 55 569-623 77-132 (164)
282 2nsz_A Programmed cell death p 48.2 1.1E+02 0.0037 24.8 9.4 65 520-585 10-76 (129)
283 4a1g_A Mitotic checkpoint seri 47.8 1.2E+02 0.0041 25.4 9.2 47 501-547 84-131 (152)
284 3ubw_A 14-3-3E, 14-3-3 protein 46.5 1.3E+02 0.0046 27.7 10.0 58 520-577 34-92 (261)
285 4a1g_A Mitotic checkpoint seri 45.6 1.3E+02 0.0046 25.1 10.1 54 569-622 82-136 (152)
286 3lvg_A Clathrin heavy chain 1; 44.6 0.028 9.5E-07 57.0 -15.7 264 307-608 55-325 (624)
287 3kae_A CDC27, possible protein 43.2 63 0.0021 27.7 6.5 20 658-677 220-239 (242)
288 2ion_A PDCD4, programmed cell 40.6 1.1E+02 0.0038 25.6 8.0 65 520-585 12-78 (152)
289 2d2s_A Exocyst complex compone 40.1 1.6E+02 0.0054 26.8 9.6 21 242-262 25-45 (235)
290 1qsa_A Protein (soluble lytic 37.5 4E+02 0.014 28.3 38.0 315 171-510 13-347 (618)
291 3uzd_A 14-3-3 protein gamma; s 36.5 1.5E+02 0.0053 27.1 8.7 55 523-577 10-65 (248)
292 3t8k_A Uncharacterized protein 36.4 1.2E+02 0.0041 26.2 8.1 22 388-409 47-68 (186)
293 1o9d_A 14-3-3-like protein C; 35.9 1.6E+02 0.0054 27.3 8.8 58 522-579 13-73 (260)
294 2wvi_A Mitotic checkpoint seri 35.6 2E+02 0.007 24.4 10.7 70 514-586 60-130 (164)
295 2npm_A 14-3-3 domain containin 35.2 1.7E+02 0.0059 27.0 8.9 58 522-579 33-94 (260)
296 2nsz_A Programmed cell death p 35.1 1.5E+02 0.005 24.0 7.7 24 345-368 11-34 (129)
297 4aez_C MAD3, mitotic spindle c 34.7 83 0.0028 28.3 6.5 54 569-622 131-185 (223)
298 1wdy_A 2-5A-dependent ribonucl 34.3 39 0.0013 31.3 4.9 10 387-396 156-165 (285)
299 2r9g_A AAA ATPase, central reg 34.3 2.3E+02 0.0078 24.9 8.9 37 459-496 26-62 (204)
300 2br9_A 14-3-3E, 14-3-3 protein 34.0 1.5E+02 0.0053 26.8 8.3 58 521-578 9-67 (234)
301 1s6c_A KV4 potassium channel-i 32.1 80 0.0028 26.9 6.2 21 310-330 160-180 (183)
302 3t8k_A Uncharacterized protein 31.6 2.3E+02 0.008 24.2 9.2 90 316-410 13-108 (186)
303 2ijq_A Hypothetical protein; s 30.4 1.9E+02 0.0065 24.4 7.7 54 563-616 43-104 (161)
304 4gq2_M Nucleoporin NUP120; bet 29.4 4.9E+02 0.017 29.4 13.5 48 272-320 899-950 (950)
305 2xig_A Ferric uptake regulatio 29.4 1.6E+02 0.0054 24.5 7.2 60 331-391 17-76 (150)
306 3mv2_A Coatomer subunit alpha; 29.2 3.9E+02 0.013 25.6 14.6 45 589-635 209-253 (325)
307 1wdy_A 2-5A-dependent ribonucl 28.6 81 0.0028 29.1 6.0 24 563-586 190-213 (285)
308 3l6a_A Eukaryotic translation 28.4 1.2E+02 0.0042 29.8 7.3 25 238-262 15-39 (364)
309 2xig_A Ferric uptake regulatio 28.4 1.6E+02 0.0055 24.5 7.1 58 438-496 18-75 (150)
310 2ion_A PDCD4, programmed cell 27.4 1.3E+02 0.0046 25.1 6.3 23 345-367 13-35 (152)
311 2keb_A DNA polymerase subunit 27.1 2.1E+02 0.0071 21.8 7.1 31 571-601 28-58 (101)
312 3pvs_A Replication-associated 27.1 5E+02 0.017 26.2 14.3 38 459-496 267-304 (447)
313 2d2s_A Exocyst complex compone 26.9 3.6E+02 0.012 24.4 12.3 91 169-262 23-118 (235)
314 4aez_C MAD3, mitotic spindle c 26.4 1.2E+02 0.004 27.4 6.0 49 290-338 133-182 (223)
315 3iqu_A 14-3-3 protein sigma; s 26.0 1.8E+02 0.0062 26.4 7.3 39 524-562 15-53 (236)
316 3bge_A Predicted ATPase; struc 25.1 2.3E+02 0.0078 24.9 7.4 39 458-496 18-56 (201)
317 2rpa_A Katanin P60 ATPase-cont 24.8 71 0.0024 23.3 3.5 28 166-193 14-41 (78)
318 2fe3_A Peroxide operon regulat 24.5 1.7E+02 0.0058 24.1 6.5 44 453-496 27-70 (145)
319 2fe3_A Peroxide operon regulat 24.3 1.5E+02 0.005 24.5 6.1 58 332-390 13-70 (145)
320 3ctd_A Putative ATPase, AAA fa 23.6 3.1E+02 0.01 24.3 8.0 44 453-496 38-84 (213)
321 2zu6_B Programmed cell death p 23.0 4.9E+02 0.017 24.7 11.3 76 521-597 170-247 (307)
322 1mzb_A Ferric uptake regulatio 22.8 1.5E+02 0.0052 24.0 5.9 58 438-496 9-67 (136)
323 4gq2_M Nucleoporin NUP120; bet 22.6 5E+02 0.017 29.3 11.9 111 488-616 816-926 (950)
324 3eyy_A Putative iron uptake re 22.3 1.3E+02 0.0045 24.8 5.4 59 331-391 9-67 (145)
325 2o8p_A 14-3-3 domain containin 21.9 4.4E+02 0.015 23.7 10.7 74 523-598 12-90 (227)
326 4ets_A Ferric uptake regulatio 21.7 1.9E+02 0.0064 24.5 6.3 58 438-496 24-83 (162)
327 2jul_A Calsenilin; EF-hand, ca 21.7 1.5E+02 0.0052 27.1 6.4 136 158-298 105-256 (256)
328 3c1d_A Protein ORAA, regulator 21.2 3.6E+02 0.012 22.5 9.4 49 323-373 47-95 (159)
329 2qx5_A Nucleoporin NIC96; mRNA 20.9 7.9E+02 0.027 26.3 13.2 80 382-473 300-382 (661)
330 3eyy_A Putative iron uptake re 20.9 1.2E+02 0.0042 25.0 4.9 42 454-496 25-66 (145)
331 2w57_A Ferric uptake regulatio 20.5 1.6E+02 0.0054 24.5 5.6 45 453-497 22-67 (150)
332 1mzb_A Ferric uptake regulatio 20.4 1.6E+02 0.0055 23.9 5.5 58 332-390 9-67 (136)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-36 Score=337.12 Aligned_cols=453 Identities=10% Similarity=0.021 Sum_probs=394.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+...+..++..+.+.|++++|+.+|+.+....| +..++..++.+|.+.|++++|+.+|+.+... +++..+++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 455678899999999999999999999997766 3478889999999999999999999998642 47899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHH-hC--------------CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 243 SGLFWCGRYDDAWKAYEAME-AN--------------NVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQE 307 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~-~~--------------g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~ 307 (686)
.+|.+.|++++|+++|+++. .. +.+++..+|+.++.+|.+.|+ +++|+++|++|.+.+.. +..
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~-~~~ 235 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN-FDRAKECYKEALMVDAK-CYE 235 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCch-hhH
Confidence 99999999999999999532 21 223458899999999999999 99999999999987533 333
Q ss_pred HHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 308 VVGAL--------------------------------------MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLIN 349 (686)
Q Consensus 308 ~~~~l--------------------------------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 349 (686)
.+..+ +..|.+.|++++|.++|+.+.+. +++..+|+.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 33333 55666889999999999998876 579999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHH
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSD 429 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 429 (686)
+|.+.|++++|+++|+++.+.+.. +..+++.++.++.+.|++++|..+++++.+.. ..+..++..+...|.+.|+. +
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~-~ 390 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI-S 390 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH-H
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH-H
Confidence 999999999999999999987544 67789999999999999999999999998653 44788999999999999887 8
Q ss_pred HHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 430 MAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 430 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
+|..+|+++.+..+. +..+|+.++.+|.+.|++++|+.+|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999999887543 6889999999999999999999999999986 34578999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 510 SEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQPT--LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 510 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 876 568899999999999999999999999999876 66777 8899999999999999999999999999764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 584 KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 584 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+.+..+|..++.+|.+.|++++|.++++++++.. .-+...+..+..++
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3479999999999999999999999999999864 23456777776665
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-36 Score=331.99 Aligned_cols=445 Identities=10% Similarity=-0.015 Sum_probs=387.1
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 199 SPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT 278 (686)
Q Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 278 (686)
+...|..++..|.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|++++|+.+|+.+... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 457889999999999999999999999874 2368889999999999999999999999998654 788999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 279 AMRKNGRSAKEAWEFFEKMNRK---------------GVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIV 343 (686)
Q Consensus 279 ~~~~~g~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 343 (686)
+|.+.|+ +++|+++|+++... +...+..+|+.++..|.+.|++++|.++|+++.+.+.. +...
T Consensus 159 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 159 CLVKLYD-WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp HHHHTTC-HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHhh-HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHH
Confidence 9999999 99999999953222 12335789999999999999999999999999987533 4444
Q ss_pred HHHH--------------------------------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 344 YNTL--------------------------------------INAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDA 385 (686)
Q Consensus 344 ~~~l--------------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 385 (686)
+..+ +..|.+.|++++|.++|+++.+. .++..+|+.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 4433 45566789999999999998875 4689999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHH
Q 044251 386 YSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEK 465 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (686)
|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|+. ++|..+|+.+....+. +..+|+.++.+|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEK-NKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCH-HHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999877533 677889999999999887 8899999999876543 78899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 466 AYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 466 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
|..+|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999885 34467899999999999999999999999999876 56888999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 044251 546 IGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQV 619 (686)
Q Consensus 546 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 619 (686)
.. +.+..+|+.++.+|.+.|++++|.++|++|.+. +..|+ ..+|..++.+|.+.|++++|.++++++++.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 76 458999999999999999999999999999876 66887 7899999999999999999999999999865 2
Q ss_pred CCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 620 PDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 620 p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
.+..+|..++.++. ..|+.++|.+.|.++.+.+|++++.
T Consensus 548 ~~~~~~~~l~~~~~------------------------~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 548 NDANVHTAIALVYL------------------------HKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp CCHHHHHHHHHHHH------------------------HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CChHHHHHHHHHHH------------------------HhCCHHHHHHHHHHHHhcCCCChHH
Confidence 36777777776662 4457899999999999999988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.2e-26 Score=237.33 Aligned_cols=282 Identities=15% Similarity=0.105 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 309 VGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR 388 (686)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (686)
+..+...+.+.|++++|...|+.+.+.. +.+...+..+...+...|++++|.++|+++.+.... +..+|..+..++..
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 181 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3333333333333344444333333332 112333333444444444444444444444433211 23344444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHH
Q 044251 389 RMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYA 468 (686)
Q Consensus 389 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 468 (686)
.|++++|...|+++.+... .+...+..+...+...++. ++|...|++.....+. +..++..+..+|.+.|++++|+.
T Consensus 182 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIF-DRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCT-THHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444433221 1223333333333333333 3344444444333221 34444555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 044251 469 AFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL 548 (686)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 548 (686)
.|+++.+.. +.+..++..+..++.+.|++++|...++++++.. +.+..+++.+...+...|++++|...++++.+..
T Consensus 259 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 335 (388)
T 1w3b_A 259 TYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF- 335 (388)
T ss_dssp HHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 555555431 2234445555555555555555555555555443 3445555555555555555555555555554432
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRV 600 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~ 600 (686)
+.+..++..++.+|.+.|++++|...|+++.+ +.| +...|..+..++...
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHc
Confidence 22445555555555555555555555555553 233 244444444444433
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.9e-26 Score=239.85 Aligned_cols=384 Identities=14% Similarity=0.054 Sum_probs=337.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 044251 170 LLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG 249 (686)
Q Consensus 170 l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (686)
++..+.+.|++++|++.++.+....|.. +..+..+..++...|++++|...++..... .+.+..+|..++.++.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDN--TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCC
Confidence 3677889999999999999999988765 477888889999999999999999988773 3478999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 250 RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
++++|++.|+++.... +.+..+|..+..++...|+ +++|.+.|+++++..+. +...+..+...+...|++++|...|
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGD-MEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSC-SSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999998763 3456789999999999998 99999999999987533 5667888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 330 MEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 409 (686)
+++.+.. +.+..+|..+...+.+.|++++|+..|+++.+.+.. +...|..+..++...|++++|...+++...... .
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-C
Confidence 9999874 447899999999999999999999999999987543 677899999999999999999999999987642 2
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALL 489 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 489 (686)
+..++..+...+...|+. ++|...|+++.+.++. +..+|..+..+|.+.|++++|+..|+++.+. .+.+..++..+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLI-DLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHH
Confidence 578888899999999887 8899999999987654 5778999999999999999999999999986 456789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 567 (686)
..+...|++++|...++++++.. +.+..++..++..|.+.|++++|...|+++.+.. +.+...|..+...+...|+
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999875 6678899999999999999999999999998865 4478888888888877663
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.7e-28 Score=261.69 Aligned_cols=209 Identities=15% Similarity=0.191 Sum_probs=156.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCCh-hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------
Q 044251 426 KMSDMAADAFLRMKRVGIKPTS-HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD------- 497 (686)
Q Consensus 426 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------- 497 (686)
+....+..+.+.+.+.+..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+.
T Consensus 4 ~~~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 4 HMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp --------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred cccchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhc
Confidence 3334455666666666554332 35677788888888888888888888888888888888888888876553
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHH
Q 044251 498 --TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLL 575 (686)
Q Consensus 498 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 575 (686)
++.|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 576 KEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDV 634 (686)
Q Consensus 576 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a 634 (686)
++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||..++..+..
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888887744
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.7e-28 Score=257.69 Aligned_cols=205 Identities=12% Similarity=0.146 Sum_probs=179.8
Q ss_pred HHHHHHhcccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCC--------HHH
Q 044251 219 LMVLFKNLPQSKEFRD-AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRS--------AKE 289 (686)
Q Consensus 219 A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~--------~~~ 289 (686)
+..+.+.+...+.... ..+++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+.. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4455555555444443 3468899999999999999999999999999999999999999999876541 688
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 290 AWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 044251 370 KGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR 423 (686)
Q Consensus 370 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 423 (686)
.|+.||..||+.||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998865
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3e-23 Score=225.35 Aligned_cols=454 Identities=8% Similarity=-0.032 Sum_probs=329.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
.+.+......+.+.|++++|+..|+.+....| ++..+..++.++.+.|++++|+..|+++.... +.+..+|..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35667788999999999999999999999886 46899999999999999999999999988744 368889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
++.+.|++++|+..|+++...+ +++......++..+..... ...+.+.+..+...+..++...+..-...........
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQA-MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHH-HHHHTTC---------------------------CCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 9999999999999999998875 3444444444444433322 3333333333222221111111111000000111111
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCCC--------CCHHH
Q 044251 324 EALIIQMEMEKKGI---------PSNAIVYNTLINAYCK---SNQLEEAEGLFQEMKT-----KGLK--------PTSAT 378 (686)
Q Consensus 324 ~A~~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~~ 378 (686)
....+...+..... +.+...+..+...+.. .|++++|+.+|+++.+ .... .+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 11111111111111 1225555555555554 8999999999999887 3111 13457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHH
Q 044251 379 FNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYS 458 (686)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (686)
+..++.++...|++++|..+++.+.+.... ...+..+...+...|+. +.|...++.+....+. +...+..+...|.
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDS-TEYYNYFDKALKLDSN-NSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCC-TTGGGHHHHHHTTCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCH-HHHHHHHHHHhhcCcC-CHHHHHHHHHHHH
Confidence 778888999999999999999999887544 77788888888888887 7799999998877544 6778889999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 459 VGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARD 538 (686)
Q Consensus 459 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 538 (686)
..|++++|+..|+++.... +.+...+..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998863 3356788889999999999999999999999875 5567789999999999999999999
Q ss_pred HHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 539 VVSEFGKIGLQ-PT----LMTYNMLMNAYGR---GGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYH 610 (686)
Q Consensus 539 ~~~~~~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 610 (686)
.++++.+.... ++ ..+|..++.+|.. .|++++|...++++.... +.+..++..+..++...|++++|...+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99998764322 11 4489999999999 999999999999998753 336888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q 044251 611 KQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 611 ~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+++++.. |+.......+...
T Consensus 473 ~~a~~~~--~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 473 EESADLA--RTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHC--SSHHHHHHHHHHH
T ss_pred HHHHHhc--cccHHHHHHHHHH
Confidence 9999854 7665444444443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=6.7e-21 Score=203.18 Aligned_cols=339 Identities=12% Similarity=0.056 Sum_probs=165.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 184 LYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
...+..+....|. ++..+..++..+.+.|++++|+.+|+++... .+.+..+|..++.++...|++++|+..|+++.+
T Consensus 12 ~~~~~~~~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 12 DLGTENLYFQSMA--DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -----------CH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444443332 2355555555566666666666666555542 224555566666666666666666666666554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH------------HHhcCCHHHHHHH
Q 044251 264 NNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQ---EVVGALMKS------------FCDEGLKNEALII 328 (686)
Q Consensus 264 ~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~ 328 (686)
.+ +.+..++..+...+...|+ +++|.+.|+++.+.... +. ..+..++.. +...|++++|...
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGK-LDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 42 2334555555555555555 56666666665554311 22 334433222 4444555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 329 QMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLE 408 (686)
Q Consensus 329 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 408 (686)
++.+.+.. +.+..++..++.+|.+.|++++|+.+|+++.+... .+..+|..++.++...|++++|...|+++... .
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 241 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--D 241 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 55544432 22444444555555555555555555554444321 13444444555555555555555555544432 1
Q ss_pred CCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HH
Q 044251 409 PNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS-----IE 483 (686)
Q Consensus 409 p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~ 483 (686)
|+.......+.. +. ....+..++..|...|++++|+.+|+++... .|+ ..
T Consensus 242 p~~~~~~~~~~~-----------------~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~ 296 (450)
T 2y4t_A 242 QDHKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVR 296 (450)
T ss_dssp TTCHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHH
T ss_pred CChHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 211111110000 00 0011222355666666666666666666653 233 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
.+..+..++.+.|++++|...++.+++.. +.+..+|..+..+|...|++++|...++++.+.. +-+...+..+.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 55556666666666666666666666554 4455666666666666666666666666666543 22455555554
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.3e-22 Score=216.22 Aligned_cols=446 Identities=9% Similarity=-0.059 Sum_probs=312.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..+...+..+.+.|++++|+..|+++.... |+..+|..++.++.+.|++++|+..|+++.+.+ +.+..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456677777888888888888888877643 578888888888888888888888888887663 44567788888888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
...|+ +++|...|+++...+. ++......++..+........+.+.+..+...+..++...+................
T Consensus 84 ~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGK-FADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTC-HHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHhh-HHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 88887 8888888888887753 343444444444444333333333333332222212111111111111111111111
Q ss_pred HHHHHHHHHCCCC--------C-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCCCC--------CHHHHH
Q 044251 361 EGLFQEMKTKGLK--------P-TSATFNILMDAYSR---RMQPEIVEKLLLELQD-----MGLEP--------NAKSYT 415 (686)
Q Consensus 361 ~~~~~~m~~~g~~--------p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~ 415 (686)
..+...+...... | +...+..+...+.. .|++++|..+++++.+ ....| +...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111111111 1 24455555555554 8999999999999987 31122 345667
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS 495 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 495 (686)
.+...+...|+. +.|...|+.+....+. ...+..+..+|...|++++|+..++++... .+.+...+..+...+...
T Consensus 242 ~~~~~~~~~~~~-~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 242 HTGIFKFLKNDP-LGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHSSCH-HHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-CcCCHHHHHHHHHHHHHh
Confidence 777788888787 8899999999988655 888999999999999999999999999885 344668899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHH
Q 044251 496 GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLL 575 (686)
Q Consensus 496 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 575 (686)
|+++.|...++++++.. +.+..++..+...|...|++++|..+++++.+.. +.+..+|..++..|...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999876 5567789999999999999999999999998765 447789999999999999999999999
Q ss_pred HHHHHCCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchhhhHHH
Q 044251 576 KEMATLNIK-PD----SVTYSTMIYAFVR---VRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAI 647 (686)
Q Consensus 576 ~~m~~~g~~-pd----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~ 647 (686)
+++....-. ++ ..++..++.++.. .|++++|...++++++.. ..+...+..++.++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~--------------- 459 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMK--------------- 459 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH---------------
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH---------------
Confidence 999864211 11 3488999999999 999999999999998754 12344544444444
Q ss_pred HHHHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 648 LGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 648 ~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
...|..++|...|.++.+..|++++.
T Consensus 460 ---------~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 460 ---------LQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp ---------HHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred ---------HHhcCHHHHHHHHHHHHHhccccHHH
Confidence 13457788899999999988877654
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.5e-21 Score=211.52 Aligned_cols=432 Identities=10% Similarity=0.026 Sum_probs=329.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
..+.+......+.+.|++++|+..|+.+....|.. +..+..++.++.+.|++++|+..|+++.... +.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE--PVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 34667888999999999999999999999988754 5899999999999999999999999988744 36899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKG------VKLSQEVVGALMKSF 316 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~ 316 (686)
.++...|++++|+..|+.+ .. .|+.. ...+..+...+. ...|...+++++... ..|+... +..+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~-~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~ 170 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNL-NKQAMKVLNENLSKDEGRGSQVLPSNTS----LASF 170 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHHH-HHHHHHHHHHHCC-------CCCCCHHH----HHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHH-HHHHHHHHHHHHHhCccccccccchHhH----HHHH
Confidence 9999999999999999744 32 33322 122333444444 678888998886541 2334333 3344
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------HcCCHHHHHHHHHHHHHCCCCCC-------HHHHH
Q 044251 317 CDEGLKNEALIIQMEMEKKGIPSNAI-VYNTLINAYC--------KSNQLEEAEGLFQEMKTKGLKPT-------SATFN 380 (686)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~ 380 (686)
....+.+.+...+...... .+... ....+...+. ..|++++|..+|+++.+.... + ..++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 171 FGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALC 247 (537)
T ss_dssp HHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHH
Confidence 4556666555444332222 12211 2233332222 235899999999999876433 2 23567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhc
Q 044251 381 ILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVG 460 (686)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (686)
.+...+...|++++|...++.+.+. .|+...+..+...+...|+. +.|...|+.+....+. +..+|..+...|...
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS-QEFFKFFQKAVDLNPE-YPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC-HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH-HHHHHHHHHHhccCCC-CHHHHHHHHHHHHhc
Confidence 7778889999999999999999886 45578888888899999887 8899999999887654 678899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 461 GWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVV 540 (686)
Q Consensus 461 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 540 (686)
|++++|+..|+++.... +.+...+..+...+...|++++|..+++++++.. +.+..++..+...|...|++++|...+
T Consensus 324 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999998863 3356788999999999999999999999999886 567788999999999999999999999
Q ss_pred HHHHhCCC-----CCCHHHHHHHHHHHHhc----------CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 541 SEFGKIGL-----QPTLMTYNMLMNAYGRG----------GQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKR 605 (686)
Q Consensus 541 ~~~~~~~~-----~p~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 605 (686)
+++.+... ......+..+..+|.+. |++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHH
Confidence 99875431 11233455566778888 99999999999999753 3368899999999999999999
Q ss_pred HHHHHHHHHHCC
Q 044251 606 AFFYHKQMVKSG 617 (686)
Q Consensus 606 A~~~~~~m~~~g 617 (686)
|.+.++++++..
T Consensus 481 A~~~~~~al~~~ 492 (537)
T 3fp2_A 481 AIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999864
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.1e-21 Score=205.74 Aligned_cols=368 Identities=11% Similarity=0.078 Sum_probs=238.5
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 269 DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLI 348 (686)
Q Consensus 269 ~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 348 (686)
+...+..+...+...|+ +++|+.+|+++++.. +.+..++..+...+...|++++|...|+.+.+.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQ-LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 44566666666666666 677777777766653 2356666666677777777777777777766653 23566666667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC
Q 044251 349 NAYCKSNQLEEAEGLFQEMKTKGLKPTS---ATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPR 425 (686)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 425 (686)
.+|.+.|++++|.+.|+++.+.... +. ..+..++..+...+. ..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-----------------------~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRL-----------------------RSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHcC
Confidence 7777777777777777766654321 22 444444333211111 11122233344
Q ss_pred ChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 426 KMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIW 505 (686)
Q Consensus 426 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 505 (686)
+. ++|..+|+.+.+..+. +...+..++.+|.+.|++++|+.+|+++.+. .+.+..++..+..+|...|++++|...+
T Consensus 158 ~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 158 DY-TAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp CH-HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44 6677777766665433 5666777777777777777777777777664 2345677777777777777777777777
Q ss_pred HHHHhcCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCcc
Q 044251 506 KLMMSEKVEGTRVTFNIL------------LDGFAKQGQYLEARDVVSEFGKIGLQPT----LMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 506 ~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~ 569 (686)
+.+++.. +.+...+..+ +..|.+.|++++|..+|+++.+.... + ...|..++.++.+.|+++
T Consensus 235 ~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 235 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHH
Confidence 7777654 3344444444 78889999999999999999875422 3 457888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhhhhcchhhhHHHH
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD-VKSYEKLRSILDVKVATKNRRDKSAIL 648 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~l~a~~~~~~~~~~~~~~ 648 (686)
+|+.+++++.... +.+..+|..++.+|...|++++|...++++++.. |+ ...+..+..+.......... ..
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~-~~---- 384 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLEKAQRLLKQSQKR-DY---- 384 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHSC-CS----
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHhhcccch-hH----
Confidence 9999999998742 3368999999999999999999999999999753 54 55666666554332211111 11
Q ss_pred HHHHhcccc-hhhcccchhHHHHH-HHhhCCCC
Q 044251 649 GIINSKMGM-VKAKKKGKKDEFWK-YKKRHPRT 679 (686)
Q Consensus 649 ~~~~~~~~~-~~~~~~~a~~~f~~-~~~~~p~~ 679 (686)
+...|. ..+..++++..|.+ +++.+|++
T Consensus 385 ---y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 385 ---YKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp ---GGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred ---HHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 111221 11234566777776 77777754
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.1e-19 Score=198.39 Aligned_cols=437 Identities=10% Similarity=-0.028 Sum_probs=315.8
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 200 PRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITA 279 (686)
Q Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 279 (686)
...+..++..+.+.|++++|+..|+++.... +.++.+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4677888888999999999999999887744 3688999999999999999999999999987764 4567788888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHH
Q 044251 280 MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK------GIPSNAIVYNTLINAYCK 353 (686)
Q Consensus 280 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~ 353 (686)
+...|+ +++|+..|+ ...... + .....+..+...+....|...++.+... ...|+. ..+..+..
T Consensus 103 ~~~~g~-~~~A~~~~~-~~~~~~--~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 103 NESLGN-FTDAMFDLS-VLSLNG--D--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHTC-HHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHcCC-HHHHHHHHH-HHhcCC--C--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 999998 999999996 443322 2 1222344555566677888888887554 122333 33444556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------hcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHH
Q 044251 354 SNQLEEAEGLFQEMKTKGLKPTSA-TFNILMDAYS--------RRMQPEIVEKLLLELQDMGLEPN------AKSYTCLI 418 (686)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~--------~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~ll 418 (686)
..+.+.+...+...... .+... ....+...+. ..+++++|..+++.+.+...... ...+..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTG 250 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHH
Confidence 66776666555433322 22222 2222222222 23578999999999986532211 22455555
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044251 419 SAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDT 498 (686)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 498 (686)
..+...|+. +.|...|+.+.... |+...+..+...|...|++++|+..|+++.... +.+..++..+...+...|++
T Consensus 251 ~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 251 IFHFLKNNL-LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcccH-HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 667777776 88999999999875 447888899999999999999999999998863 44678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 044251 499 GMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 499 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 578 (686)
+.|...++++++.. +.+..++..+...|...|++++|..+++++.+.. +.+...|..+...|...|++++|...++++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999876 5567889999999999999999999999998876 447889999999999999999999999998
Q ss_pred HHCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchhh
Q 044251 579 ATLN-----IKPDSVTYSTMIYAFVRV----------RDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRD 643 (686)
Q Consensus 579 ~~~g-----~~pd~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~ 643 (686)
.+.. ..-....+..+..++... |++++|..+++++++.. ..+...+..++.++.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~---------- 473 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKL---------- 473 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------
Confidence 7532 111233455566778888 99999999999999864 234555555555552
Q ss_pred hHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCcc
Q 044251 644 KSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQS 681 (686)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~ 681 (686)
..|+.++|+..|.++.+..|++++
T Consensus 474 --------------~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 474 --------------QMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp --------------HTTCHHHHHHHHHHHHHHC--CHH
T ss_pred --------------HhccHHHHHHHHHHHHHhCCCcHH
Confidence 334667777777777777776554
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=3.1e-17 Score=168.63 Aligned_cols=328 Identities=10% Similarity=0.043 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 271 VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINA 350 (686)
Q Consensus 271 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 350 (686)
..+..+...+...|+ +++|+..|+++++... .+..++..+...+...|++++|...++.+.+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQ-LADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345555555556665 6666666666655432 245555556666666666666666666655542 2245555566666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH
Q 044251 351 YCKSNQLEEAEGLFQEMKTKGLK--PTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMS 428 (686)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 428 (686)
+...|++++|...|+++.+.... .+...+..+..... + ..+..+...+...|+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~----------------~~~~~~a~~~~~~~~~- 136 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M----------------QRLRSQALDAFDGADY- 136 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHTTCH-
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHccCH-
Confidence 66666666666666665554210 01222222211100 0 0011123455556565
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
++|..+++.+.+..+. +...+..+..++...|++++|+..++++... .+.+..++..+...+...|+++.|...++.+
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7788888887776543 5677888888888888888888888888875 3456778888888888888888888888888
Q ss_pred HhcCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCccHHH
Q 044251 509 MSEKVEGTRVTFN------------ILLDGFAKQGQYLEARDVVSEFGKIGLQPTL----MTYNMLMNAYGRGGQTSKLP 572 (686)
Q Consensus 509 ~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~ 572 (686)
++.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+..+|...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 8765 34444333 2366788999999999999998876522 44 33556888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 044251 573 QLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD-VKSYEKLRSIL 632 (686)
Q Consensus 573 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~l 632 (686)
..++++.+.. +.+..++..+..++...|++++|...++++++.. |+ ...+..+..+.
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHH
Confidence 9999999752 3368899999999999999999999999999754 55 45555555554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=3.1e-17 Score=168.59 Aligned_cols=315 Identities=12% Similarity=0.048 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 200 PRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITA 279 (686)
Q Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 279 (686)
+..+..++..+.+.|++++|+..|+++.... +.+..++..+...+...|++++|+..|+++.+.. +.+...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4567777778888888888888888776633 3567788888888888888888888888877653 3356677777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044251 280 MRKNGRSAKEAWEFFEKMNRKGVK--LSQEVVGAL------------MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYN 345 (686)
Q Consensus 280 ~~~~g~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 345 (686)
+...|+ +++|...|+++.+.... .+...+..+ ...+...|++++|...++.+.+.. +.+...+.
T Consensus 81 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGK-LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHTC-HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHcCC-hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 778887 88888888888775420 133344333 355566666666666666666553 23556666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC
Q 044251 346 TLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPR 425 (686)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 425 (686)
.+...+...|++++|...|+++.+.... +..++..+..++...|++++|...++.+.+.. |+...
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~------------ 223 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKR------------ 223 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchH------------
Confidence 6666666666666666666666654322 45556666666666666666666666655432 11110
Q ss_pred ChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 044251 426 KMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI----ETYTALLDAFRRSGDTGMM 501 (686)
Q Consensus 426 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a 501 (686)
+...+..+. .......+...+.+.|++++|...++++..... .+. ..+..+..++...|+++.|
T Consensus 224 -----~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 224 -----CFAHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp -----HHHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -----HHHHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHH
Confidence 111111111 111122234455666666666666666655321 122 1123344445555555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 502 MKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
...++.+++.. +.+..++..+...|...|++++|...|+++.+.
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555443 334445555555555555555555555555443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=5.3e-15 Score=159.28 Aligned_cols=354 Identities=12% Similarity=0.052 Sum_probs=247.4
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHCCCCC
Q 044251 233 RDAHVYNAAISGLFW----CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRK----NGRSAKEAWEFFEKMNRKGVKL 304 (686)
Q Consensus 233 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~m~~~~~~~ 304 (686)
.++..+..+...|.. .+++++|+..|++..+.| +...+..|...+.. .++ .++|.++|++..+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQD-YAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHCC---
Confidence 345555555555555 566666666666665542 34455555555555 444 666666666666554
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCH
Q 044251 305 SQEVVGALMKSFCD----EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK----SNQLEEAEGLFQEMKTKGLKPTS 376 (686)
Q Consensus 305 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~ 376 (686)
+...+..|...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|++.|++..+.| +.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555556666665 566677777776666654 45566666666665 567777777777766653 45
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHcCCCCChh
Q 044251 377 ATFNILMDAYSR----RMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR----PRKMSDMAADAFLRMKRVGIKPTSH 448 (686)
Q Consensus 377 ~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~ 448 (686)
..+..+...|.. .++.++|.++|++..+.| +...+..+...|.. .++. ++|..+|++..+.+ +..
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~-~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY-TQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCC---CHH
Confidence 566666666666 667777777777766653 34445455554442 3344 66777777776653 455
Q ss_pred hHhhhHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCHHH
Q 044251 449 SYTALIHAYSV----GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS-----GDTGMMMKIWKLMMSEKVEGTRVT 519 (686)
Q Consensus 449 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~ 519 (686)
.+..+...|.. .++.++|+..|++..+.+ +...+..+...|... ++.++|...+++..+.+ +...
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 66666666766 788899999998887653 556777777777776 89999999999988765 4567
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 520 FNILLDGFAKQG---QYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR----GGQTSKLPQLLKEMATLNIKPDSVTYST 592 (686)
Q Consensus 520 ~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 592 (686)
+..+...|...| ++++|...|++..+.+ +...+..|...|.. .+++++|..+|++..+.| +...+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~ 404 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Confidence 777777887766 7889999999988764 67888889999988 789999999999998865 5778888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 044251 593 MIYAFVR----VRDFKRAFFYHKQMVKSGQ 618 (686)
Q Consensus 593 li~~~~~----~g~~~~A~~~~~~m~~~g~ 618 (686)
|...|.. .+++++|..+|+++.+.+.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8888888 8999999999999998763
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=2.7e-15 Score=161.51 Aligned_cols=353 Identities=12% Similarity=0.038 Sum_probs=281.5
Q ss_pred CHHHHHHHHHHHHc----cCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCH
Q 044251 199 SPRACSVLFPVLGR----ARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW----CGRYDDAWKAYEAMEANNVRPDH 270 (686)
Q Consensus 199 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~ 270 (686)
++.++..+...|.. .+++++|+..|++..+. .+...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44677777777776 78888888888887764 467788888888888 888889988888887754 55
Q ss_pred HHHHHHHHHHHH----cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 271 VTCSIMITAMRK----NGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD----EGLKNEALIIQMEMEKKGIPSNAI 342 (686)
Q Consensus 271 ~~~~~ll~~~~~----~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~ 342 (686)
..+..|...+.. .++ +++|..+|++..+.| +...+..|...|.. .+++++|.+.|+...+.| +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVD-KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 666667777766 555 888999998888775 56777778888877 788899999998888875 677
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044251 343 VYNTLINAYCK----SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR----RMQPEIVEKLLLELQDMGLEPNAKSY 414 (686)
Q Consensus 343 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 414 (686)
.+..|...|.. .+++++|+++|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88888888887 788999999998888764 55677778887775 788999999998887754 34455
Q ss_pred HHHHHHhcC----CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHH
Q 044251 415 TCLISAYGR----PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVG-----GWHEKAYAAFENMLREEIKPSIETY 485 (686)
Q Consensus 415 ~~ll~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~ 485 (686)
..+-..|.. .++. ++|..+|+...+.| +...+..+...|... +++++|+..|++..+.+ +...+
T Consensus 259 ~~lg~~y~~g~~~~~d~-~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEP-LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHTTTSSCCH-HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHCCCCCCCCH-HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 555555544 5555 78999999888764 566777788888877 89999999999998864 55677
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 486 TALLDAFRRSG---DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK----QGQYLEARDVVSEFGKIGLQPTLMTYNML 558 (686)
Q Consensus 486 ~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 558 (686)
..+...|...| +.++|...|++..+.+ +...+..|...|.. .+++++|...|++..+.+ +...+..|
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77877887766 7899999999999874 67788889999988 899999999999998865 67888999
Q ss_pred HHHHHh----cCCccHHHHHHHHHHHCCC
Q 044251 559 MNAYGR----GGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 559 i~~~~~----~g~~~~A~~l~~~m~~~g~ 583 (686)
...|.+ .++.++|...|++..+.+.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999998 8999999999999998753
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=6e-16 Score=168.46 Aligned_cols=405 Identities=10% Similarity=0.018 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..|..++.. .+.|++++|+.+|+++.. ..|.+...|..++..+.+.|++++|..+|+++... .|+...|...+...
T Consensus 14 ~~w~~l~~~-~~~~~~~~a~~~~e~al~-~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 14 DAWSILIRE-AQNQPIDKARKTYERLVA-QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYV 89 (530)
T ss_dssp HHHHHHHHH-HHSSCHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHH
Confidence 555555552 455666666666666555 23345566666666666666666666666666554 35555555544322
Q ss_pred H-HcCCCHHHHH----HHHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 281 R-KNGRSAKEAW----EFFEKMNRK-GVKL-SQEVVGALMKSFCD---------EGLKNEALIIQMEMEKKGIPSNAIVY 344 (686)
Q Consensus 281 ~-~~g~~~~~a~----~~~~~m~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~~ 344 (686)
. ..|+ .+.|. ++|++.+.. |..| +...|..++....+ .|+++.|..+|+..++.........|
T Consensus 90 ~~~~~~-~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 90 RETKGK-LPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHTTT-STTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHccc-hhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 2232 33333 245444432 3222 34455555544433 45666666666666552111111233
Q ss_pred HHHHHHH-------------HHcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc----C
Q 044251 345 NTLINAY-------------CKSNQLEEAEGLFQEMK------TKG---LKPT--------SATFNILMDAYSRR----M 390 (686)
Q Consensus 345 ~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~ll~~~~~~----~ 390 (686)
....... .+.++++.|..+++.+. +.. +.|+ ...|...+...... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 2222110 12345677777666532 111 2333 23455444333221 2
Q ss_pred CH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-------CCChH------HHHHHHHHHHHH-cCCCCChhhHhh
Q 044251 391 QP----EIVEKLLLELQDMGLEPNAKSYTCLISAYGR-------PRKMS------DMAADAFLRMKR-VGIKPTSHSYTA 452 (686)
Q Consensus 391 ~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~------~~A~~~~~~~~~-~~~~~~~~~~~~ 452 (686)
+. +.+..+|++..... .-+...|..+...+.. .|+.. +.|..+|++..+ ..+ .+...|..
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-~~~~l~~~ 326 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFA 326 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-SCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 22 36677888877652 2356666666666553 55652 278888888876 322 25778888
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHH
Q 044251 453 LIHAYSVGGWHEKAYAAFENMLREEIKPS-I-ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDG-FAK 529 (686)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~ 529 (686)
++..+.+.|++++|..+|+++++. .|+ . ..|...+..+.+.|+++.|..+|++.++.. +.+...|...+.. +..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHH
Confidence 888899999999999999999884 443 3 478888888888899999999999998764 3333333332222 335
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHH
Q 044251 530 QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN-IKPD--SVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd--~~~~~~li~~~~~~g~~~~A 606 (686)
.|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+++...+ ..|+ ...|...+......|+.+.+
T Consensus 404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999887764 4478889999999999999999999999998753 2232 44777778888888999999
Q ss_pred HHHHHHHHHC
Q 044251 607 FFYHKQMVKS 616 (686)
Q Consensus 607 ~~~~~~m~~~ 616 (686)
..+.+++.+.
T Consensus 483 ~~~~~r~~~~ 492 (530)
T 2ooe_A 483 LKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.3e-16 Score=162.04 Aligned_cols=141 Identities=13% Similarity=0.015 Sum_probs=65.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCCHHHHHHHH
Q 044251 453 LIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEK--------VEGTRVTFNILL 524 (686)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li 524 (686)
+...|...|++++|...++++.+. .+.+...+..+...+...|++++|...++++++.. .+....++..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 333444444444444444444332 12233344444444444444444444444443321 122234555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 044251 525 DGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAF 597 (686)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~ 597 (686)
..|...|++++|...++++.+.. +.+..+|..+..+|.+.|++++|.+.++++.+. .| +...+..+..++
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 55555555555555555555443 224455555555555555555555555555532 33 344455555544
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.2e-16 Score=162.20 Aligned_cols=287 Identities=12% Similarity=0.049 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 341 AIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA 420 (686)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 420 (686)
...+..++..+...|++++|+++|+++.+.... +...+..++.++...|++++|..+++++.+... .+...+..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHH
Confidence 334444444555555555555555555443221 222333344444555555555555555544321 133444444444
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 421 YGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGM 500 (686)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 500 (686)
+...|+..+.|...|+++....+. +...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 444441225566666655554332 45667788888888899999999998888753 3345667778888889999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCccHHH
Q 044251 501 MMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG--------LQPTLMTYNMLMNAYGRGGQTSKLP 572 (686)
Q Consensus 501 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~ 572 (686)
|...++++++.. +.+..++..+...|...|++++|...++++.+.. .+.+..+|..+..+|...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999988776 5677888888999999999999999998877532 1334678888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 573 QLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDV 634 (686)
Q Consensus 573 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a 634 (686)
..++++.+.. +.+..++..+..++...|++++|..+++++++.. ..+...+..++.++..
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEM 316 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHH
Confidence 9999988753 3357788888889999999999999999887643 2356677777777743
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=3.2e-15 Score=162.68 Aligned_cols=409 Identities=11% Similarity=0.038 Sum_probs=301.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
-+...+..++. +.+.|++++|..+|+.++...|.. ...|...+..+.+.|++++|..+|++..... |++..|...
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~--~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSS--GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 36777888887 478999999999999999987754 5899999999999999999999999998743 588888888
Q ss_pred HHHH-HHcCCHHHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHCCCCCC
Q 044251 242 ISGL-FWCGRYDDAWK----AYEAMEAN-NVRP-DHVTCSIMITAMRK---------NGRSAKEAWEFFEKMNRKGVKLS 305 (686)
Q Consensus 242 i~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~ll~~~~~---------~g~~~~~a~~~~~~m~~~~~~~~ 305 (686)
+... ...|++++|.+ +|+..... |..| +...|...+..... .|+ ++.|..+|++.++......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR-ITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH-HHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH-HHHHHHHHHHHHhchhhhH
Confidence 8643 45677777665 77776543 5444 56778777776554 566 8999999999998421111
Q ss_pred HHHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHHc-
Q 044251 306 QEVVGALMKSF-------------CDEGLKNEALIIQMEME------KKG---IPSN--------AIVYNTLINAYCKS- 354 (686)
Q Consensus 306 ~~~~~~li~~~-------------~~~g~~~~A~~~~~~~~------~~g---~~~~--------~~~~~~li~~~~~~- 354 (686)
...|....... ...+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 23444332211 12455677777766532 221 2443 35666666443332
Q ss_pred ---CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHH
Q 044251 355 ---NQL----EEAEGLFQEMKTKGLKPTSATFNILMDAYSR-------RMQPE-------IVEKLLLELQDMGLEPNAKS 413 (686)
Q Consensus 355 ---g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~ 413 (686)
++. +.|..+|++.+.... -+...|..++..+.+ .|+++ +|..+|++..+.-...+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 232 478889999887633 367788888888775 68876 89999999886222335788
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 044251 414 YTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT-SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDA- 491 (686)
Q Consensus 414 ~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 491 (686)
+..+...+.+.|+. +.|..+|+++.+..+. + ...|...+..+.+.|++++|..+|++..+.. +.+...|...+..
T Consensus 324 ~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKY-EKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 88888888888777 8899999999986432 3 3589999999999999999999999998852 2233333333222
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCc
Q 044251 492 FRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL-QP--TLMTYNMLMNAYGRGGQT 568 (686)
Q Consensus 492 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~li~~~~~~g~~ 568 (686)
+...|+.+.|..+|+..++.. +.+..+|..++..+.+.|+.++|..+|+++...+. .| ....|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 346899999999999999875 56789999999999999999999999999987642 22 255888888888899999
Q ss_pred cHHHHHHHHHHHC
Q 044251 569 SKLPQLLKEMATL 581 (686)
Q Consensus 569 ~~A~~l~~~m~~~ 581 (686)
+.+..+++++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998863
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=2.8e-14 Score=161.00 Aligned_cols=410 Identities=14% Similarity=0.143 Sum_probs=311.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEP-SLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
...+++.....++.+...|.+.+|+++++++...+. +..+....+.++....+. +..+.....+++.. -+ .
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---A 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---H
Confidence 356888889999999999999999999999995532 334456666666666555 44555555555432 11 3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 239 NAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
.-+...+...|.+++|..+|++.. -.....+.++. ..++ +++|.++.++. -+..+|..+.+++.+
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~n-ldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGN-LDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhh-HHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 447888999999999999999963 12223334433 4455 89999998865 257899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 319 EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKL 398 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 398 (686)
.|++++|...|.+. .|...|..++.++.+.|++++|.++|...++..- +....+.++.+|++.+++++...+
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHH
Confidence 99999999999664 3788999999999999999999999998877642 332333599999999998864444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 399 LLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI 478 (686)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 478 (686)
+ . .++...+..+...|...|.+ ++|..+|... ..|..++.+|++.|++++|.+.+++.
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~Y-eeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMY-DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCH-HHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 3 2 45666777777888888776 8899999985 37999999999999999999999877
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 479 KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNML 558 (686)
Q Consensus 479 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 558 (686)
.+..+|..+..+|...|++..|....-. +..+...+..++..|.+.|.+++|+.+++..+... +-....|+-|
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 3568899999999999999999887654 34566778899999999999999999999887665 4466788888
Q ss_pred HHHHHhc--CCccHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHH-------------HHHHHHCC
Q 044251 559 MNAYGRG--GQTSKLPQLLKEMATLNIKP------DSVTYSTMIYAFVRVRDFKRAFFY-------------HKQMVKSG 617 (686)
Q Consensus 559 i~~~~~~--g~~~~A~~l~~~m~~~g~~p------d~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g 617 (686)
..+|++- ++..+++++|..-. +++| +...|..++-.|.+.|+++.|... |+..+.
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-- 1396 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT-- 1396 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--
Confidence 8888764 45666666666443 3333 467799999999999999999832 222221
Q ss_pred CCCCHHHHHHHHHHHH
Q 044251 618 QVPDVKSYEKLRSILD 633 (686)
Q Consensus 618 ~~p~~~~~~~l~~~l~ 633 (686)
-..+++.|-+++..+-
T Consensus 1397 kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYL 1412 (1630)
T ss_pred ccccHHHHHHHHHHHH
Confidence 2457788888888773
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=5.4e-17 Score=167.75 Aligned_cols=309 Identities=11% Similarity=-0.014 Sum_probs=220.5
Q ss_pred HHHHcCCCHHHHHH-HHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 044251 279 AMRKNGRSAKEAWE-FFEKMNRKGVK---LSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS 354 (686)
Q Consensus 279 ~~~~~g~~~~~a~~-~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 354 (686)
.+...|+ +++|.+ .|++....... .+...+..+...+.+.|++++|...++.+.+.. +.+..+|..+..+|.+.
T Consensus 34 ~~~~~~~-~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSD-YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHT
T ss_pred hhHHHHH-HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3444555 777777 77765543211 124456777888888888888888888888774 44777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHH
Q 044251 355 NQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADA 434 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~ 434 (686)
|++++|+..|+++.+.... +..++..++.++...|++++|...++++.... |+.... +...+.. .
T Consensus 112 g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~------~~~~~~~-~----- 176 (368)
T 1fch_A 112 EQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHL------VTPAEEG-A----- 176 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGG------CC------------
T ss_pred cCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHH------HHHHHHH-h-----
Confidence 8888888888888776433 66778888888888888888888888887653 221110 0000000 0
Q ss_pred HHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044251 435 FLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV 513 (686)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 513 (686)
... . ....+..+...+ ..|++++|+..|+++....... +..++..+...+...|+++.|...++++++..
T Consensus 177 --~~~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 247 (368)
T 1fch_A 177 --GGA----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR- 247 (368)
T ss_dssp ----------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --hhh----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 000 0 111222333344 8899999999999998853221 57889999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC--------
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-------- 585 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------- 585 (686)
+.+..++..+...|...|++++|...++++.+.. +.+..+|..++.+|.+.|++++|...|+++....-..
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 5678899999999999999999999999998775 4578899999999999999999999999988642111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 586 --DSVTYSTMIYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 586 --d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 614 (686)
...+|..+..+|...|++++|..++++.+
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 16889999999999999999999877443
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=3.7e-17 Score=168.99 Aligned_cols=309 Identities=13% Similarity=0.038 Sum_probs=225.9
Q ss_pred HHHHcCCHHHHHH-HHHHHHhCCC-CC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 244 GLFWCGRYDDAWK-AYEAMEANNV-RP--DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 244 ~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
.+...|++++|.+ .|++...... .| +...+..+...+...|+ +++|...|+++++... .+..++..+...+...
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD-LPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTC-HHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC
Confidence 5667789999998 8886654321 11 34567788889999998 9999999999999753 4788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
|++++|...++.+.+.. +.+..++..+..+|...|++++|+..|+++...... +...+..+... ...
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~---- 178 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG---- 178 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------------------
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh----
Confidence 99999999999999885 448899999999999999999999999999987433 22222211110 000
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC-ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKP-TSHSYTALIHAYSVGGWHEKAYAAFENMLREEI 478 (686)
Q Consensus 400 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 478 (686)
. .+. ..+. .+..+...|+. ++|...|+++....+.. +..++..+...|...|++++|+..|+++... .
T Consensus 179 ---~----~~~-~~~~-~~~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~ 247 (368)
T 1fch_A 179 ---A----GLG-PSKR-ILGSLLSDSLF-LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-R 247 (368)
T ss_dssp ---------------C-TTHHHHHHHHH-HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred ---h----ccc-HHHH-HHHHHhhcccH-HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 0 000 0011 11111233344 77888888887765432 4678888999999999999999999998885 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--------
Q 044251 479 KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQP-------- 550 (686)
Q Consensus 479 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-------- 550 (686)
+.+..++..+...+...|++++|...++++++.. +.+..++..+..+|.+.|++++|...++++.+.....
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 4467889999999999999999999999998876 5678899999999999999999999999987654221
Q ss_pred --CHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 551 --TLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 551 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
...+|..+..+|...|++++|..++++..
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 27899999999999999999998877443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=3.2e-16 Score=161.89 Aligned_cols=277 Identities=10% Similarity=-0.030 Sum_probs=211.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 305 SQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD 384 (686)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 384 (686)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..+|..+..+|.+.|++++|+..|+++.+.... +..+|..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34457788888888899999999998888874 347888888888888889999999998888876432 5778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHH
Q 044251 385 AYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHE 464 (686)
Q Consensus 385 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 464 (686)
+|...|++++|..+++++.+.. |+.... +. ..+ .....+..+...+...|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~------~~------~~~-------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYL------VK------NKK-------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHH------Hh------hhc-------------cchHHHHHHHHHHhhhhhHH
Confidence 8888888888888888887642 211000 00 000 12334556678889999999
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 465 KAYAAFENMLREEIK-PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEF 543 (686)
Q Consensus 465 ~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 543 (686)
+|+.+|+++...... .+..++..+...+...|++++|...++++++.. +.+..+|+.+..+|...|++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999886322 167889999999999999999999999999876 667889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 544 GKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIK-----------PDSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 544 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------pd~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
.+.. +.+..+|..+..+|.+.|++++|...|+++.+..-. .+..+|..+..++...|+.+.+..+.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8875 447899999999999999999999999999863211 1357889999999999999998887664
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=1.5e-15 Score=153.75 Aligned_cols=280 Identities=10% Similarity=-0.043 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 306 QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDA 385 (686)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 385 (686)
...+..+...+...|++++|..+++.+.+.. +.+..++..+..++...|++++|...|+++.+.... +..++..+..+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHH
Confidence 3456677788889999999999999988874 347888888999999999999999999998876433 67788888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHH--HHHhcCCH
Q 044251 386 YSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIH--AYSVGGWH 463 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~ 463 (686)
+...|++++|...++++.+..... ...+..+... .++......+.. .+...|++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQY-EQLGSVNLQA-----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTT-TTC-------------------------------------------CCTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHH-----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999887753221 1111111000 011111112212 36778889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 464 EKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEF 543 (686)
Q Consensus 464 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 543 (686)
++|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+..++..+...|...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998763 4477888999999999999999999999998876 567888999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 544 GKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-----------DSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 544 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------d~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
.+.. +.+..+|..+..+|...|++++|.+.++++....-.. +..++..+..++...|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8775 4478899999999999999999999999998642111 367889999999999999999999875
Q ss_pred HH
Q 044251 613 MV 614 (686)
Q Consensus 613 m~ 614 (686)
.+
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=1.2e-15 Score=157.44 Aligned_cols=276 Identities=12% Similarity=0.010 Sum_probs=206.9
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 269 DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLI 348 (686)
Q Consensus 269 ~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 348 (686)
+...|..+...+...|+ +++|+++|+++++... .+..++..+...+...|++++|...|+++.+.. +.+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGD-LPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44568888899999998 9999999999998754 478899999999999999999999999999874 44789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCh
Q 044251 349 NAYCKSNQLEEAEGLFQEMKTKGLKPTSA-TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKM 427 (686)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 427 (686)
.+|...|++++|+..|+++.+.. |+.. .+..+. .....+..+...+...|+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhH
Confidence 99999999999999999998752 2211 111110 0112233333444445444
Q ss_pred HHHHHHHHHHHHHcCCC-CChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 428 SDMAADAFLRMKRVGIK-PTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWK 506 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 506 (686)
++|..+|+++....+. .+..++..+...|...|++++|+..|+++.+. .+.+..++..+..+|...|++++|...++
T Consensus 194 -~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 194 -EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp -HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666666665432 15667788888888889999999998888875 34467888888888999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCccHHHHHH
Q 044251 507 LMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-----------PTLMTYNMLMNAYGRGGQTSKLPQLL 575 (686)
Q Consensus 507 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~l~ 575 (686)
++++.. +.+..++..+..+|...|++++|...|+++.+.... .+..+|..|..++...|+.+.+..+.
T Consensus 272 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 272 RALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888775 556888888999999999999999999987754311 13578899999999999998887776
Q ss_pred HH
Q 044251 576 KE 577 (686)
Q Consensus 576 ~~ 577 (686)
++
T Consensus 351 ~~ 352 (365)
T 4eqf_A 351 LG 352 (365)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.4e-14 Score=155.27 Aligned_cols=384 Identities=14% Similarity=0.047 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHhccc--------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-
Q 044251 200 PRACSVLFPVLGRARMGDDLMVLFKNLPQ--------SKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN-----N- 265 (686)
Q Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 265 (686)
...|+.++.++...|++++|++.|++..+ ...+....+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 35677777777777777777777765422 112245667777777888888888887777766431 0
Q ss_pred CCC-CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCC
Q 044251 266 VRP-DHVTCSIMITAMRKNGR-SAKEAWEFFEKMNRKGVKLSQEVVGALMKS---FCDEGLKNEALIIQMEMEKKGIPSN 340 (686)
Q Consensus 266 ~~p-~~~~~~~ll~~~~~~g~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~g~~~~ 340 (686)
..+ ...++..+..++...|+ .+++|++.|++.++..+. +...+..+... +...++.++|++.++...+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 011 23445544444444331 267788888877775432 44444444433 334566677777777776653 235
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044251 341 AIVYNTLINAYCK----SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTC 416 (686)
Q Consensus 341 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (686)
..++..+...+.. .|++++|.+++++....... +...+..+...+...|++++|...+.+..+.... +...+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 5566555555444 35667777777777665433 5566777777788888888888888777765321 3444444
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 417 LISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 417 ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
+...|... ... .... ............+..++|...+++..... +.+..++..+...+...|
T Consensus 287 lg~~y~~~------~~~----~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 287 IGCCYRAK------VFQ----VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHH------HHH----HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHH------HHH----hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 33333210 000 0000 00000001111223455666666655532 223344555666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCH--HHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 497 DTGMMMKIWKLMMSEKVEGTR--VTFNILLDG-FAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 497 ~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
++++|+..|+++++....+.. .++..+... +...|+.++|+..|++.++.. |+....... ...+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKM---------KDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH---------HHHHHH
Confidence 666666666666655422221 122222222 234567777777777766543 222211111 123344
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 574 LLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 574 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
++++....+ +.+..+|..++.+|...|++++|++.|+++++.|
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455544432 2356677777777777777777777777777654
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=2.8e-14 Score=152.87 Aligned_cols=385 Identities=11% Similarity=0.008 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 044251 270 HVTCSIMITAMRKNGRSAKEAWEFFEKMNRK-----G---VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK-----G 336 (686)
Q Consensus 270 ~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~-----~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g 336 (686)
...|+.|...+...|+ .++|++.|++.++. + ......+|+.+..+|...|++++|...++++.+. +
T Consensus 51 a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556777777777776 77777777766542 0 1123456666666677777777776666665432 0
Q ss_pred --CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 337 --IPSNAIVYNTLINAYCKS--NQLEEAEGLFQEMKTKGLKPTSATFNILMDA---YSRRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 337 --~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~~~p 409 (686)
......++..+..++... +++++|+..|++..+.... +...+..+..+ +...++.++|++.+++..+... .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-D 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-c
Confidence 011344555554444443 3466677766666654322 33333333333 2234555566666666555421 1
Q ss_pred CHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044251 410 NAKSYTCLISAYGR----PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETY 485 (686)
Q Consensus 410 ~~~~~~~ll~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 485 (686)
+...+..+...+.. .+.. ++|..++++.....+. +..++..+...|...|++++|+..+++..+. .+.+..++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~-~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~ 284 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEE-GEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY-IPNNAYLH 284 (472)
T ss_dssp CHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-CCChHHHH
Confidence 33333333222221 1222 4566666665555433 4455566666666666666666666666553 22234444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044251 486 TALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG 565 (686)
Q Consensus 486 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 565 (686)
..+..+|...+....+ .. ...........+..+.|...+++..... +.+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 4444443221110000 00 0000001112234678888888887765 44667788899999999
Q ss_pred CCccHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----h-hh
Q 044251 566 GQTSKLPQLLKEMATLNIKPDS--VTYSTMIY-AFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDV----K-VA 637 (686)
Q Consensus 566 g~~~~A~~l~~~m~~~g~~pd~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a----~-~~ 637 (686)
|++++|+..|+++.+....+.. ..+..+.. .+...|++++|+..++++++. .|+..........+.. . ..
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKDKLQKIAKMRLSK 425 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999875433321 12333333 345779999999999999874 4665444433333321 1 11
Q ss_pred hcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCcccc
Q 044251 638 TKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSHA 683 (686)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~~ 683 (686)
.++....-..++.+.. ..|+.++|++.|.++++.+|.+|+..
T Consensus 426 ~p~~~~~~~~LG~~~~----~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 426 NGADSEALHVLAFLQE----LNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp CC-CTTHHHHHHHHHH----HHHHCC--------------------
T ss_pred CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 1111112223444433 56789999999999999999998754
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=5.7e-15 Score=149.55 Aligned_cols=279 Identities=9% Similarity=0.020 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 271 VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINA 350 (686)
Q Consensus 271 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 350 (686)
..+..+...+...|+ +++|..+|+++++... .+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 22 ~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLAN-LAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 456677788889998 9999999999998754 378889999999999999999999999999874 4478899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--hcCCCChH
Q 044251 351 YCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA--YGRPRKMS 428 (686)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~ 428 (686)
|...|++++|.+.|+++.+.... +...+..++.. .|+......+... +...|+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~- 154 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY- 154 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH-
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH-
Confidence 99999999999999999886432 22222222111 0111111122122 4444444
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
++|...++++.+..+. +...+..+...|...|++++|+..++++... .+.+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7788888888877544 6788889999999999999999999999886 3446788999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCccHHHHHHHH
Q 044251 509 MSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQP-----------TLMTYNMLMNAYGRGGQTSKLPQLLKE 577 (686)
Q Consensus 509 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~l~~~ 577 (686)
++.. +.+..++..+...|...|++++|...++++.+..... +..+|..+..+|.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8876 5678899999999999999999999999988664221 478899999999999999999998875
Q ss_pred HH
Q 044251 578 MA 579 (686)
Q Consensus 578 m~ 579 (686)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=8e-17 Score=176.07 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 305 SQEVVGALMKSFCDEGLKNEALIIQMEMEK---KGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNI 381 (686)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 381 (686)
-..||++||.+||+.|++++|.++|.+|.+ .|+.||+++||+||.+||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456788888888888888888888877653 47888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC------hhhHhhhH
Q 044251 382 LMDAYSRRMQ-PEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT------SHSYTALI 454 (686)
Q Consensus 382 ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~li 454 (686)
||.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+ +.+++..+++ ..+..|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR-----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR-----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH-----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH-----HHHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 8888888887 47788888888888888888888888754433 2233333333 2233333 44555566
Q ss_pred HHHHhcC
Q 044251 455 HAYSVGG 461 (686)
Q Consensus 455 ~~~~~~g 461 (686)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666655
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=8.1e-15 Score=145.67 Aligned_cols=259 Identities=13% Similarity=0.038 Sum_probs=195.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
++.....|+++.|+..++.+....|.. .......++++|...|+++.|+..++.. .+++..++..++..+...|+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~-~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPER-DVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHH-HHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchh-hHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 677788999999999887765443322 1234566788899999999998877653 23677888888999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPD-HVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
.++|++.++++...+..|+ ...+..+..++...|+ +++|++.+++ +.+..++..++..+.+.|++++|.+.+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~-~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN-PDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC-HHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC-HHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999887765454 4555666678888888 9999999887 457788888999999999999999999
Q ss_pred HHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 330 MEMEKKGIPSNAIVY--NTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGL 407 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 407 (686)
+.+.+.... +.... ..++..+...|++++|+.+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+...
T Consensus 154 ~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 154 KKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999887422 22111 223344445588999999999988873 34777888899999999999999999999887642
Q ss_pred CCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCC
Q 044251 408 EPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIK 444 (686)
Q Consensus 408 ~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~ 444 (686)
-+..++..++..+...|+..+.+.++++++.+..+.
T Consensus 232 -~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 232 -GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp -TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 267777777777777777755567888888776543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=8.6e-15 Score=145.47 Aligned_cols=131 Identities=13% Similarity=0.039 Sum_probs=61.3
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETY---TALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNI 522 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 522 (686)
+...+..++..|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++++.. +.+..+++.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~ 205 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNG 205 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 33444445555555555555555555555432 222111 111122222345555555555555442 344555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSK-LPQLLKEMAT 580 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~ 580 (686)
+..++.+.|++++|...+++++... +-+..++..++..+...|+.++ +.++++++.+
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5555555555555555555554443 2245555555555555555543 3445555543
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=1.2e-12 Score=147.93 Aligned_cols=345 Identities=14% Similarity=0.104 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
..++.++...++. +..+..++...... .....++.++...|.+++|..+|++... .....+.++
T Consensus 1023 ~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi-- 1086 (1630)
T 1xi4_A 1023 NLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI-- 1086 (1630)
T ss_pred HHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH--
Confidence 4444455555555 23444444333331 1234467778888888888888888532 222223332
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNE 324 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (686)
-..|++++|.++.++. -+..+|..+..++...|+ +++|.+.|.+. -|...|..++..|.+.|++++
T Consensus 1087 -e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~-~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1087 -EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM-VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred -HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC-HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHH
Confidence 2677888888887754 235678888888888888 88888888654 367778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 325 ALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 325 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
|.+.+....+... +....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 8888887776642 3333345888888888887543332 2 235566777888888888888888888874
Q ss_pred cCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 044251 405 MGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIET 484 (686)
Q Consensus 405 ~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 484 (686)
..|..+...|.+.|+. +.|.+.+++.. +..+|..+..+|...|++..|...... +..+...
T Consensus 1222 -------~ny~rLA~tLvkLge~-q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~de 1282 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEY-QAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE 1282 (1630)
T ss_pred -------hHHHHHHHHHHHhCCH-HHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHH
Confidence 3778888888888776 77888887662 667888888888888888888776653 2335566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCC------CHHHHH
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK--QGQYLEARDVVSEFGKIGLQP------TLMTYN 556 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~ 556 (686)
+..++..|.+.|.+++|+.+++..+... +-....|+-+...|++ -+++.++.++|..-. .+++ +...|.
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~ 1359 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWA 1359 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHH
Confidence 7788888888888888888888877665 5556677666666665 445666666666422 2222 566788
Q ss_pred HHHHHHHhcCCccHHH
Q 044251 557 MLMNAYGRGGQTSKLP 572 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~ 572 (686)
-++..|.+.|+++.|.
T Consensus 1360 elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1360 ELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHhcccHHHHH
Confidence 8888888888888887
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=2.6e-15 Score=152.54 Aligned_cols=282 Identities=14% Similarity=0.113 Sum_probs=106.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAW 255 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (686)
+.|++++|.++++.+-. +.+|..++.++.+.|++++|+..|.+. +|...|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 45668888888888821 257888888888888888888888653 56668888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 256 KAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 256 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
..++..++. .+++.+.+.++.+|.+.|+ ++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~-l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNR-LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp -----------------------------C-HHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCC-HHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 877766654 4556778888888888887 777777764 256678888888888888888888888865
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044251 336 GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYT 415 (686)
Q Consensus 336 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 415 (686)
..|..|+.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHH
Confidence 35788888888888888888888877 1678888888888888888888554433 223334444
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc-CCCC------CHHHHHHH
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE-EIKP------SIETYTAL 488 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p------~~~~~~~l 488 (686)
.++..|.+.|.+ ++|..+++...... ......|+-+.-+|++-. +++..+.++..... +++| +...|.-+
T Consensus 212 ~lv~~Yek~G~~-eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 212 ELINYYQDRGYF-EELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 566667777665 66777777666544 224555666655555542 33333332222111 1111 23345555
Q ss_pred HHHHHHcCCHHHHHH
Q 044251 489 LDAFRRSGDTGMMMK 503 (686)
Q Consensus 489 l~~~~~~g~~~~a~~ 503 (686)
.-.|...++++.|..
T Consensus 289 ~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 289 VFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHhhchHHHHHH
Confidence 555556666665554
No 35
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=5.6e-16 Score=157.46 Aligned_cols=284 Identities=12% Similarity=0.105 Sum_probs=132.3
Q ss_pred HccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHH
Q 044251 211 GRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEA 290 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a 290 (686)
-+.|++++|.+.++++.. | .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+ +++|
T Consensus 14 ~~~~~ld~A~~fae~~~~----~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~-~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE----P--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGN-WEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC----h--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCC-HHHH
Confidence 467889999999999844 3 4899999999999999999999965 3577799999999999998 9999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 291 WEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 291 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
..+++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 9988777764 3457889999999999999999998884 257789999999999999999999999977
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhH
Q 044251 371 GLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSY 450 (686)
Q Consensus 371 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 450 (686)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|++ +.|......+. .+..-.
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef-~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF-RLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH-HHHHHTTTTTT-----TCHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcH-HHHHHHHHHHH-----hCHhhH
Confidence 36899999999999999999999988 2789999999999999887 77865554422 234445
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCC------CHHHHHH
Q 044251 451 TALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS--GDTGMMMKIWKLMMSEKVEG------TRVTFNI 522 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~ 522 (686)
..++..|.+.|++++|+.+++..+... +--...|+-+..+|++- +++.+.++.|..- .++++ +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHH
Confidence 568899999999999999999988653 44557777777777654 3344444444321 23333 4557889
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVV 540 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~ 540 (686)
++..|...++++.|...+
T Consensus 288 ~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHH
Confidence 999999999999887744
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=172.81 Aligned_cols=118 Identities=11% Similarity=0.138 Sum_probs=66.5
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLR---EEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNIL 523 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 523 (686)
..+|+++|.+|++.|++++|..+|.+|.+ .|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655432 345555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044251 524 LDGFAKQGQ-YLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 524 i~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 564 (686)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 555555554 34555555555555555555555555544433
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.3e-13 Score=134.17 Aligned_cols=232 Identities=13% Similarity=0.038 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 341 AIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA 420 (686)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 420 (686)
...|..+...+...|++++|+..|+++.+.. .+...|..+..++...|++++|...+.++.+......
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------- 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------- 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc----------
Confidence 4567777777888888888888888777765 5667777777777788888877777777654210000
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 421 YGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGM 500 (686)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 500 (686)
... . ....+|..+...|...|++++|+..|+++... .|+. ..+...|+++.
T Consensus 73 ----~~~-~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 73 ----ADY-K---------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEK 123 (258)
T ss_dssp ----CCH-H---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHH
T ss_pred ----cch-H---------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHH
Confidence 000 0 01456777778888888888888888888874 4443 34566778888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 501 MMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 501 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
|...++.+.... +.+..++..+...+...|++++|...++++.+.. +.+..+|..++.+|...|++++|...++++.+
T Consensus 124 a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999988888765 4567788888889999999999999999988776 44788899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 581 LNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 581 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.. +.+..++..+..++...|++++|...++++++.
T Consensus 202 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 53 335888899999999999999999999998864
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.2e-13 Score=129.88 Aligned_cols=225 Identities=13% Similarity=-0.007 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CC----HHHH
Q 044251 306 QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK--PT----SATF 379 (686)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~~~ 379 (686)
...+..+...+...|++++|...|+.+.+.. .+..+|..+..+|...|++++|+..|++..+.... ++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678889999999999999999999999987 68899999999999999999999999998875321 22 5688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHh
Q 044251 380 NILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSV 459 (686)
Q Consensus 380 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 459 (686)
..+..++...|++++|...++++.+. .|+... +..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~-------------------------------------------~~~ 117 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTADI-------------------------------------------LTK 117 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH-------------------------------------------HHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CchhHH-------------------------------------------HHH
Confidence 88999999999999999999988774 344222 233
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 460 GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDV 539 (686)
Q Consensus 460 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 539 (686)
.|++++|...++++... .+.+...+..+...+...|++++|...++++++.. +.+..++..+...|...|++++|...
T Consensus 118 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYV-NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444555555544442 11123444555555555555555555555555544 33455666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 540 VSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
++++.+.. +.+..+|..+..+|.+.|++++|...++++.+
T Consensus 196 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66665544 33566666666666666666666666666654
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=1.6e-13 Score=145.57 Aligned_cols=348 Identities=11% Similarity=-0.002 Sum_probs=148.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCCh---hHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMG---DDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
.+...+.+.|++++|+++|+.+.+.+ ++.++..+..+|...|+. ++|+..|++.... ++..+..|...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 34555666666777777766665542 123444555555555555 5555555555431 333444444433
Q ss_pred HHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044251 246 FWCG-----RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 246 ~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 320 (686)
...| ++++|+..|++..+.| .++ .+..|...|...++ ...
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~-~~~------------------------------- 124 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPH-SFP------------------------------- 124 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGG-GCT-------------------------------
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCC-CCC-------------------------------
Confidence 3333 4445555555554433 111 23333333332221 100
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM---QPEIVEK 397 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~ 397 (686)
-..+.+.+......| +...+..|...|...+.++++......+.+.-...+...+..|..+|...| +.++|.+
T Consensus 125 -~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 125 -NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp -TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 012333333333333 233444555555555533333332222211101112225555666666666 6666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHcCCCCChhhHhhhHHH-H--HhcCCHHHHHHHH
Q 044251 398 LLLELQDMGLEPNAKSYTCLISAYGRP----RKMSDMAADAFLRMKRVGIKPTSHSYTALIHA-Y--SVGGWHEKAYAAF 470 (686)
Q Consensus 398 ~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~ 470 (686)
+|++..+.|. ++...+..+-..|... ++. ++|..+|+... . -+...+..+... | ...+++++|+..|
T Consensus 201 ~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~-~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 201 QMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE-KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH-HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 6666665552 2333333333333221 233 55666666655 2 244455555554 3 3456666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 044251 471 ENMLREEIKPSIETYTALLDAFRRSG-----DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK----QGQYLEARDVVS 541 (686)
Q Consensus 471 ~~m~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 541 (686)
++..+.| +...+..+...|. .| ++++|...|++.. +.+...+..|...|.. ..++++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 6666544 4445555555554 33 5556666555554 2244444445444443 225555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHH
Q 044251 542 EFGKIGLQPTLMTYNMLMNAYGR----GGQTSKLPQLLKEMAT 580 (686)
Q Consensus 542 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 580 (686)
+..+.| +......|...|.. ..+.++|..+|+...+
T Consensus 347 ~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 347 TAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 555444 22233344444432 2244444444444443
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=2.2e-13 Score=129.03 Aligned_cols=207 Identities=14% Similarity=0.026 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
...+..+...+.+.|++++|+..|+.++...|.. +..+..++.++.+.|++++|+..|++..... +.+..++..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQD--PEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3445555555666666666666666666554432 3555555555555666666665555554422 244555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
++.+.+. . ... .....|+ +++|+..|++.++..+. +...+..+...+...|+++
T Consensus 82 ~~~~~~~------------~---~~~---------~~~~~g~-~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 82 AYVALYR------------Q---AED---------RERGKGY-LEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHH------------T---CSS---------HHHHHHH-HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhh------------h---hhh---------hcccccC-HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChH
Confidence 5555500 0 000 0000044 45555555554443321 3444444555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
+|...|++..+.. .+...+..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|...+++.
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555443 34555555555555555555555555555443222 3344444555555555555555555443
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=2.4e-13 Score=144.22 Aligned_cols=319 Identities=13% Similarity=0.035 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccC-----ChhHHHHHHHhcccCCCCCCHH
Q 044251 165 RECVQLLELMANDGLL---GCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRAR-----MGDDLMVLFKNLPQSKEFRDAH 236 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~---~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~ 236 (686)
..+..+...+...|++ ++|+..|+.+... ++.++..+..++...| ++++|+..|++....+. ..
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~ 107 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GN 107 (452)
T ss_dssp TGGGTCC---------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SS
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HH
Confidence 4444555556667777 8999999999865 3467888888665555 67899999999887554 33
Q ss_pred HHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 237 VYNAAISGLFWCGRYDD---AWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALM 313 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li 313 (686)
.+..|...|...+..++ +.+.+......| +...+..+...+...+. ++.+......+.+.-...++..+..|.
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~-~~~~~~~a~~~~~~a~~~~~~a~~~Lg 183 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT-YDQHLDDVERICKAALNTTDICYVELA 183 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC-GGGGHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC-cccCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77788888887765544 344444444333 22344444444544442 222222211111111111222444444
Q ss_pred HHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 044251 314 KSFCDEG---LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS----NQLEEAEGLFQEMKTKGLKPTSATFNILMDA- 385 (686)
Q Consensus 314 ~~~~~~g---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~- 385 (686)
..|...| +.++|+..|+...+.|.. +...+..|...|... +++++|+.+|+... .| +...+..|...
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLL 258 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHH
Confidence 5555555 555555555555554422 333333344444332 34555555555444 21 22333333333
Q ss_pred H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcC--
Q 044251 386 Y--SRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGG-- 461 (686)
Q Consensus 386 ~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 461 (686)
+ ...+++ ++|..+|++..+.| +...+..|...|. .|
T Consensus 259 ~~~~~~~d~------------------------------------~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 259 YDFPELGDV------------------------------------EQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp HHSGGGCCH------------------------------------HHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred HhCCCCCCH------------------------------------HHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 2 223444 44555555554443 3444444444444 33
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----c
Q 044251 462 ---WHEKAYAAFENMLREEIKPSIETYTALLDAFRR----SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK----Q 530 (686)
Q Consensus 462 ---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 530 (686)
++++|+..|++.. .-+...+..+...|.. ..+.++|...|++..+.|. ......|..+|.. .
T Consensus 299 ~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBC
T ss_pred CCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCC
Confidence 5666666666554 2244455555555444 2366677777776666552 2234444545543 3
Q ss_pred CCHHHHHHHHHHHHhCC
Q 044251 531 GQYLEARDVVSEFGKIG 547 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~ 547 (686)
.+..+|...|+...+.|
T Consensus 372 ~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 46777777777766655
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=4.9e-13 Score=126.68 Aligned_cols=200 Identities=16% Similarity=0.036 Sum_probs=141.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGAL 312 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (686)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|+ +++|+..|+++++..+. +...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGL-VNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 445566666666666666666666666666543 3345556666666666666 66666666666665422 45566666
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 313 MKSFCDE-----------GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNI 381 (686)
Q Consensus 313 i~~~~~~-----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 381 (686)
...+... |++++|...++...+..+ .+...|..+..+|...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 999999999999998743 478899999999999999999999999999887 58889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKR 440 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~ 440 (686)
+..++...|++++|...|++..+... .+...+..+...+...|+. ++|...|++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKA-EEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCH-HHHHHHHHHHhh
Confidence 99999999999999999999988642 3677788888889998887 889999887653
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2.4e-12 Score=126.44 Aligned_cols=240 Identities=12% Similarity=0.113 Sum_probs=161.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 044251 344 YNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR 423 (686)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 423 (686)
+......+...|++++|+..|+++.+.... +...+..+..++...|++++|...++++.+.+..++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------- 71 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK------------- 71 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh-------------
Confidence 334455555566666666666665554322 233455555555555565555555555544211100
Q ss_pred CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 424 PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMK 503 (686)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 503 (686)
.....|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|..
T Consensus 72 ---------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 72 ---------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHH
Confidence 022345666777777777888888877777642 3355677788888888888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHH
Q 044251 504 IWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ---TSKLPQLLKEMAT 580 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~ 580 (686)
.++++++.. +.+..++..+...+...+++++|...++++.+.. +.+...+..+..++...|+ +++|...++++.+
T Consensus 130 ~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 130 YMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 888887764 5567777777734444569999999999988765 4467888888888888888 8889999888875
Q ss_pred CC-CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 581 LN-IKPD------SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 581 ~g-~~pd------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
.. -.|+ ..+|..+...|...|++++|+++++++++.. |+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~ 255 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD--PTNK 255 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--ccHH
Confidence 31 1133 2577888889999999999999999998754 5543
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=2.3e-11 Score=119.70 Aligned_cols=224 Identities=12% Similarity=0.013 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044251 340 NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR----RMQPEIVEKLLLELQDMGLEPNAKSYT 415 (686)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 415 (686)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 45566666666777777777777777666632 34455556666666 666666666665554432
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSV----GGWHEKAYAAFENMLREEIKPSIETYTALLDA 491 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 491 (686)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 73 ------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 119 (273)
T 1ouv_A 73 ------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGI 119 (273)
T ss_dssp ------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHH
Confidence 33344444455555 666666666666666543 45556666666
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 492 FRR----SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK----QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYG 563 (686)
Q Consensus 492 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 563 (686)
|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 666 666666666666666654 44556666666666 677777777777766653 4566667777777
Q ss_pred h----cCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 044251 564 R----GGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR----VRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 564 ~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 617 (686)
. .+++++|...+++..+.+ +...+..+...|.. .+++++|+++++++.+.|
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7 777777777777777643 25566677777777 777777777777777665
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=3.2e-11 Score=118.64 Aligned_cols=224 Identities=10% Similarity=-0.027 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHhcccCCCCCCHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGR----ARMGDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
....+..+...+...|++++|++.|+.+... .++.++..++.++.. .+++++|+..|++.... .+..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---NYSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---CCHHHH
Confidence 3455666677777777777777777777762 234666667777777 77777777777776654 256677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044251 239 NAAISGLFW----CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRK----NGRSAKEAWEFFEKMNRKGVKLSQEVVG 310 (686)
Q Consensus 239 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~m~~~~~~~~~~~~~ 310 (686)
..+...|.. .+++++|++.|++..+.+ +..++..+...+.. .++ +++|+.+|++..+.+ +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~-~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRD-FKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC-HHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccC-HHHHHHHHHHHHhcC---cHHHHH
Confidence 777777777 777777777777776653 55666666666666 665 777777777777654 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 311 ALMKSFCD----EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK----SNQLEEAEGLFQEMKTKGLKPTSATFNIL 382 (686)
Q Consensus 311 ~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 382 (686)
.+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 66666666 677777777777766654 45666666667766 677777777777766653 24455556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcC
Q 044251 383 MDAYSR----RMQPEIVEKLLLELQDMG 406 (686)
Q Consensus 383 l~~~~~----~~~~~~a~~~~~~m~~~~ 406 (686)
..+|.. .+++++|.++|++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666 666777777776666553
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=5.9e-12 Score=122.09 Aligned_cols=206 Identities=10% Similarity=-0.010 Sum_probs=157.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044251 413 SYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAF 492 (686)
Q Consensus 413 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 492 (686)
.+..+...+...|+. ++|...|+++....+. +...+..+...|...|++++|+..++++.+.. +.+...+..+...+
T Consensus 39 ~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNT-EQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHTTCT-GGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344444455555555 5566666666655432 56677788888888888999998888887753 34677888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHH
Q 044251 493 RRSGDTGMMMKIWKLMMSEKV-EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKL 571 (686)
Q Consensus 493 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 571 (686)
...|++++|..+++++.+.+. +.+..++..+...|...|++++|...++++.+.. +.+...+..++..|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999998887322 3356778888888999999999999999988765 44788888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 572 PQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSY 625 (686)
Q Consensus 572 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 625 (686)
..+++++.+.. +.+...+..+...+...|++++|.++++++++.. |+...+
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 245 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEY 245 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHH
Confidence 99999988642 3467788888888999999999999999998754 554443
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=4.2e-12 Score=124.69 Aligned_cols=237 Identities=8% Similarity=-0.037 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCC--CCHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEF--RDAHVYNAA 241 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 241 (686)
.+.....+..+...|++++|+..|+.+....|... ..+..++.++...|++++|+..|++....... ....+|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP--YIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS--TTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 44566778889999999999999999999877654 67888889999999999999999988763211 234568899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
...+...|++++|++.|++..+.. +.+...|..+...+...|+ +++|++.|+++++.. +.+..++..+...+...++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC-HHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999987763 3456788888899999998 999999999998773 3366777777734555569
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCC
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQ---LEEAEGLFQEMKTKG-LKPT------SATFNILMDAYSRRMQ 391 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~~~ 391 (686)
+++|...++.+.+.. +.+...+..+..++...|+ +++|...|++..+.. -.|+ ...|..+...|...|+
T Consensus 158 ~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 999999999998874 3367888888888888888 888888888876541 1122 2467778888889999
Q ss_pred HHHHHHHHHHHHHcC
Q 044251 392 PEIVEKLLLELQDMG 406 (686)
Q Consensus 392 ~~~a~~~~~~m~~~~ 406 (686)
+++|...++++.+..
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988763
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=8.8e-12 Score=120.85 Aligned_cols=200 Identities=17% Similarity=0.029 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
...+..++..+...|++++|+..|+.+....|.. ...+..++.++...|++++|+..|+++.... +.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS--ADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 4445555566666666666666666666554322 3455555555555555555555555544322 134455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK 322 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 322 (686)
.+...|++++|++.|+++...+..| +...+..+...+...|+ +++|.+.++++.+... .+..++..+...+...|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCH
Confidence 5555555555555555554421123 22334444444444444 4555555544444321 1334444444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
++|...++.+.+.. +.+...+..+...+.+.|++++|.++++++.+
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444331 22333444444444444444444444444443
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=3.4e-12 Score=131.15 Aligned_cols=234 Identities=9% Similarity=0.060 Sum_probs=193.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCC-hhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARM-GDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
..+.+..+...+...|++++|+..|+.++...|.. ..+|..++.++.+.|+ +++|+..|+++....+ .+..+|+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~--~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC--HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 45677788888999999999999999999988755 4889999999999997 9999999999887443 689999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD-EG 320 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g 320 (686)
..++...|++++|+..|+++.+.. +-+..+|..+..++...|+ +++|++.|+++++.... +...|+.+..++.. .|
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 4567889999999999998 89999999999987654 78889999999988 66
Q ss_pred CHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 044251 321 LKNEA-----LIIQMEMEKKGIPSNAIVYNTLINAYCKSN--QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM--- 390 (686)
Q Consensus 321 ~~~~A-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--- 390 (686)
..++| +..++..+... +-+...|+.+..++...| ++++|++.++++ +.. ..+...+..++.+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 65777 47888888774 347888999998888888 689999999887 432 336677888888888764
Q ss_pred ------CHHHHHHHHHHH-HHc
Q 044251 391 ------QPEIVEKLLLEL-QDM 405 (686)
Q Consensus 391 ------~~~~a~~~~~~m-~~~ 405 (686)
..++|.++|+++ .+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHh
Confidence 258888888887 543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=1.3e-12 Score=125.93 Aligned_cols=204 Identities=12% Similarity=0.042 Sum_probs=104.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYN 239 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 239 (686)
..++...+..+...+...|++++|+..|+.+....|.. ...+..++.++...|++++|+..|+++.... +.+..++.
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED--AIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 33455555566666666777777777777776654432 4566666666666666666666666655432 24556666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
.+...+...|++++|++.|+++.+.. +.+...+..+...+...|+ +++|.+.++++.+... .+...+..+...+...
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQ-PKLALPYLQRAVELNE-NDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHc
Confidence 66666666666666666666665542 2344555555555666665 6666666666655432 2445555555555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+.
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666555555542 224555555555555555555555555555544
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=2.5e-11 Score=115.13 Aligned_cols=200 Identities=10% Similarity=-0.036 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..+..++..+...|++++|+..|+++.... +.+..++..+...+...|++++|.+.|+++.... +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444444445555555555554444321 1344455555555555555555555555554432 22344455555555
Q ss_pred HHc-CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 044251 281 RKN-GRSAKEAWEFFEKMNRKGVKLS-QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLE 358 (686)
Q Consensus 281 ~~~-g~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 358 (686)
... |+ +++|...++++++.+..|+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|+++
T Consensus 87 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNR-PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCC-HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCc-HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 555 54 5555555555554211122 3445555555555555555555555555542 224555555566666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 359 EAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 359 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
+|..+|+++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666555543212444455555555556666666655555543
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=1.3e-12 Score=128.46 Aligned_cols=222 Identities=10% Similarity=-0.004 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHH
Q 044251 378 TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY 457 (686)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (686)
.+..++.++...|++++|...|+++.+... .+...+..+...+...|+. ++|...|+++.+..+. +...+..+..+|
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~~~-~~~~~~~la~~~ 121 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNF-DAAYEAFDSVLELDPT-YNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCH-HHHHHHHHHHHhcCcc-ccHHHHHHHHHH
Confidence 334444444444444444444444443321 1233344444444444333 4444444444443322 455666677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 458 SVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEAR 537 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 537 (686)
...|++++|...|+++.+. .|+.......+..+...|+++.|...+....... +++...+. ++..+...++.++|.
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLM 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHH
Confidence 7777777777777777764 3443333344444556677777777777766654 33333333 555566667777777
Q ss_pred HHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 538 DVVSEFGKIGLQ---PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYH 610 (686)
Q Consensus 538 ~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 610 (686)
..++++...... .+..+|..++.+|.+.|++++|...|+++... .|+. +.....++...|++++|++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 777776543211 01466777788888888888888888888754 4432 223345666777777777665
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=1.2e-11 Score=127.11 Aligned_cols=159 Identities=9% Similarity=-0.010 Sum_probs=129.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGAL 312 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (686)
.+..+|+.+..++.+.|++++|++.|+++.... +-+..+|+.+..++...|+++++|+..|+++++.... +..+|..+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 357788999999999999999999999998763 3457788888888888885489999999999987644 77888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 044251 313 MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR-RMQ 391 (686)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~ 391 (686)
..++...|++++|+..|+.+++... -+..+|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 8888888999999999988888743 37888888888888888999999988888887554 67788888888877 454
Q ss_pred HHHH
Q 044251 392 PEIV 395 (686)
Q Consensus 392 ~~~a 395 (686)
.++|
T Consensus 251 ~~eA 254 (382)
T 2h6f_A 251 NDRA 254 (382)
T ss_dssp CSHH
T ss_pred chHH
Confidence 3555
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=4.1e-12 Score=122.29 Aligned_cols=200 Identities=9% Similarity=0.010 Sum_probs=144.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 412 KSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDA 491 (686)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 491 (686)
..+..+...+...|+. +.|..+|+++.+..+. +...+..+...|...|++++|+..++++... .+.+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDY-EKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALEL-DSSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCH-HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcchHHHHHHHHH
Confidence 3344444445555554 5566666666654332 5667777778888888888888888888775 23466778888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHH
Q 044251 492 FRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKL 571 (686)
Q Consensus 492 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 571 (686)
+...|+++.|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..++..|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888765 5567788888888888999999999998887765 44788888888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 572 PQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 572 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
...++++.... +.+..++..+..++...|++++|..+++++++..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999888752 3357788888889999999999999999988754
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=1.7e-11 Score=116.19 Aligned_cols=203 Identities=13% Similarity=0.004 Sum_probs=129.5
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS 495 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 495 (686)
.+...+...|+. ++|...|+.+.+..+. +...+..+...|...|++++|...++++... .+.+..++..+...+...
T Consensus 13 ~~~~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 13 QLAMEYMRGQDY-RQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhH-HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHh
Confidence 333334444333 4444444444443322 3445666666677777777777777776664 233556666777777777
Q ss_pred -CCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 496 -GDTGMMMKIWKLMMSEKV-EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 496 -g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
|+++.|...++.+++.+. +.+..++..+...+...|++++|...++++.+.. +.+...+..++.+|.+.|++++|..
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776221 2235667777777777788888888877777654 3357777777788888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 574 LLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 574 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
+++++.......+...+..+...+...|+.+.|..+++.+.+.. |+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~ 217 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEE 217 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHH
Confidence 88877764311356666666677777888888888877776533 54443
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=7.9e-10 Score=121.23 Aligned_cols=444 Identities=11% Similarity=-0.012 Sum_probs=286.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC---HHHHHH
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR---YDDAWK 256 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 256 (686)
..+.+..|+..+...|. +...|..++..+.+.+.++.+..+|+++.. ..+.....|...+..-.+.|+ ++.+..
T Consensus 48 ~~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~-~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHD-RFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34556666777666663 457888888888888888888888888776 355677788888888777777 888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH--------
Q 044251 257 AYEAMEANN-VRPDHVTCSIMITAMRKNGRS-------AKEAWEFFEKMNR-KGV-KL-SQEVVGALMKSFC-------- 317 (686)
Q Consensus 257 ~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~-------~~~a~~~~~~m~~-~~~-~~-~~~~~~~li~~~~-------- 317 (686)
+|++..... ..|++..|...+.-..+.+.. .+...++|+.++. .|. .+ +...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888887652 137777777776655443321 1334466766654 354 33 3567777665543
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHC--CCC--------
Q 044251 318 -DEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK-------------SNQLEEAEGLFQEMKTK--GLK-------- 373 (686)
Q Consensus 318 -~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~--g~~-------- 373 (686)
..++++.+..+|+.++..-...-..+|......-.. ..+++.|...+.++... ++.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 234567777888877753111112333222211111 12344555555554321 111
Q ss_pred -------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 044251 374 -------P-----T---SATFNILMDAYSRRM-------QPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMA 431 (686)
Q Consensus 374 -------p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A 431 (686)
| + ...|...+..-...+ ..+.+..+|++++..- .-....|......+...|+. +.|
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~-~~a 362 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTD-STV 362 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCC-TTH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcH-HHH
Confidence 1 1 134444444332222 1344566788776652 23566666666655555555 567
Q ss_pred H-HHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHH
Q 044251 432 A-DAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREE---------IKPS------------IETYTALL 489 (686)
Q Consensus 432 ~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~ll 489 (686)
. .+|++.....+ .+...|...+....+.|++++|..+|++++... ..|+ ..+|...+
T Consensus 363 ~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 5 99998887543 366677888888899999999999999987641 0132 24677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ-GQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQT 568 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 568 (686)
....+.|+.+.|..+|..+++........+|...+..-.+. ++.+.|..+|+..++. ++.+...|...+......|+.
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 88888899999999999998762123334444444333444 4589999999998876 355777888888888889999
Q ss_pred cHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 569 SKLPQLLKEMATLNIKP--DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 569 ~~A~~l~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+.|..+|++.......+ ....|..++.--.+.|+.+.+..+.+++.+.- |+......+.+-+
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 99999999998753222 24577788877788999999999999999864 5554444454444
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=2.7e-12 Score=134.61 Aligned_cols=278 Identities=12% Similarity=0.060 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 044251 307 EVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA----IVYNTLINAYCKSNQLEEAEGLFQEMKTK----GLKP-TSA 377 (686)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 377 (686)
..+..+...+...|++++|...|+.+.+.+.. +. .+|..+...|...|++++|+..|++..+. +..+ ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44556667788888888888888888876433 33 46777888888888888888888877653 1111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHH
Q 044251 378 TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY 457 (686)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (686)
.+..+..+|...|++++|...+++..+... ..++. .....++..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~----------------~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR---------------QLGDR----------------LSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HHTCH----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------Hhhch----------------HHHHHHHHHHHHHH
Confidence 667777778888888888888777653200 00000 01233555666667
Q ss_pred HhcCC-----------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 044251 458 SVGGW-----------------HEKAYAAFENMLRE----EIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE- 514 (686)
Q Consensus 458 ~~~g~-----------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~- 514 (686)
...|+ +++|+..+++..+. +..+ ...++..+...+...|++++|...+++.++....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 77777 77777777765442 1111 2256777788888899999999888888764211
Q ss_pred C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC----
Q 044251 515 G----TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-----PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL---- 581 (686)
Q Consensus 515 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 581 (686)
. ...++..+...|...|++++|...++++...... ....++..+..+|...|++++|..+++++...
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 1 1337788888999999999999999987643211 12567888999999999999999999988753
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 582 NIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 582 g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+..+ ...++..+..+|...|++++|..+++++++.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 2457888999999999999999999999875
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=8.5e-12 Score=122.62 Aligned_cols=196 Identities=11% Similarity=-0.045 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 272 TCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAY 351 (686)
Q Consensus 272 ~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 351 (686)
+|..+...+...|+ +++|...|+++++... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|
T Consensus 45 ~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 45 LLYERGVLYDSLGL-RALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccc-HHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 34444444444444 4444444444444321 134444445555555555555555555554442 22345555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 044251 352 CKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMA 431 (686)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A 431 (686)
.+.|++++|...|+++.+.. |+......++..+...|++++|...+........ ++...+. ++..+...++. +.|
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~-~~a 196 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGWN-IVEFYLGNISE-QTL 196 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHHH-HHHHHTTSSCH-HHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHHH-HHHHHHHhcCH-HHH
Confidence 55555555555555555432 2222222233333444555555555544443321 1212222 33333333333 344
Q ss_pred HHHHHHHHHcCCC---CChhhHhhhHHHHHhcCCHHHHHHHHHHHHH
Q 044251 432 ADAFLRMKRVGIK---PTSHSYTALIHAYSVGGWHEKAYAAFENMLR 475 (686)
Q Consensus 432 ~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 475 (686)
...+......... .+...+..+..+|...|++++|...|+++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444322110 0134555566666666666666666666655
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=7.6e-12 Score=130.62 Aligned_cols=299 Identities=13% Similarity=0.072 Sum_probs=199.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-
Q 044251 304 LSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSN----AIVYNTLINAYCKSNQLEEAEGLFQEMKTK----GLKP- 374 (686)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 374 (686)
.....+......+...|++++|...|+.+.+.+.. + ..++..+...|...|++++|...|++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34556666777777888888888888887776332 3 356777777788888888888888776442 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhH
Q 044251 375 TSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALI 454 (686)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 454 (686)
...++..+..++...|++++|...+.+..+.... .++. .....++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~----------------~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE---------------LNDK----------------VGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HTCH----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---------------cccc----------------cchHHHHHHHH
Confidence 1335666777777777777777777766432100 0000 00133455666
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 455 HAYSVGGW--------------------HEKAYAAFENMLRE----EIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 455 ~~~~~~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
..|...|+ +++|+..+++.... +..+ ...++..+...+...|+++.|...+++.+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66667777 77777777766442 1111 13567778888888999999999988887
Q ss_pred hcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 510 SEKV-EG----TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-PT----LMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 510 ~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
+... .+ ...++..+...|...|++++|...+++....... .+ ..++..+...|...|++++|...++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5411 11 2347888888999999999999999987643211 11 5678889999999999999999999887
Q ss_pred HC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh
Q 044251 580 TL----NIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQ-VPD----VKSYEKLRSILDV 634 (686)
Q Consensus 580 ~~----g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~l~a 634 (686)
+. +-.+ ...++..+..+|...|++++|..+++++++... ..+ ..++..+..++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 53 1111 156788899999999999999999999875410 111 2455555555543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=5.2e-12 Score=131.87 Aligned_cols=305 Identities=13% Similarity=0.043 Sum_probs=219.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC
Q 044251 267 RPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS----QEVVGALMKSFCDEGLKNEALIIQMEMEKK----GIP 338 (686)
Q Consensus 267 ~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~ 338 (686)
......+......+...|+ +++|..+|+++++.+.. + ..++..+...+...|++++|...++..... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGD-CRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 4456677777888889998 99999999999987533 3 357888999999999999999999987543 211
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCC--------------------H
Q 044251 339 -SNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK-PT----SATFNILMDAYSRRMQ--------------------P 392 (686)
Q Consensus 339 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~--------------------~ 392 (686)
....++..+...|...|++++|...+++..+.... .+ ..++..+..++...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 12567888999999999999999999998775211 12 3367777788888887 5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFEN 472 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (686)
++|...+.+..+ ++.... .......++..+...|...|++++|+..+++
T Consensus 164 ~~A~~~~~~al~-----------------------------~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 164 QAAVDFYEENLS-----------------------------LVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHHH-----------------------------HHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------------------------HHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555544322 111110 0001234677788888999999999999988
Q ss_pred HHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 473 MLREEI-KPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE-G----TRVTFNILLDGFAKQGQYLEARDVVSE 542 (686)
Q Consensus 473 m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 542 (686)
..+... .++ ..++..+...+...|++++|...+++.++.... . ...++..+...|...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 765311 122 247788888899999999999999988754211 1 156788889999999999999999998
Q ss_pred HHhCCCC-CC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHH
Q 044251 543 FGKIGLQ-PT----LMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKP-DSVTYSTMIYAFVRVRDFK 604 (686)
Q Consensus 543 ~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~~~~li~~~~~~g~~~ 604 (686)
..+.... .+ ..++..+..+|...|++++|...+++..+. +..+ ...++..+...+...|+..
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 7643211 12 567888999999999999999999987743 2122 2456677777777777664
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=4.5e-11 Score=109.71 Aligned_cols=168 Identities=15% Similarity=0.118 Sum_probs=149.3
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
+...|..+...|...|++++|+..|++.++.. +-+..++..+..++...|+++.|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56789999999999999999999999998863 3467889999999999999999999999998876 567788888889
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKR 605 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 605 (686)
.+...++++.|...+.+..... +.+...+..+..+|.+.|++++|++.|+++.+.. +-+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988776 4578999999999999999999999999999753 2368899999999999999999
Q ss_pred HHHHHHHHHHCC
Q 044251 606 AFFYHKQMVKSG 617 (686)
Q Consensus 606 A~~~~~~m~~~g 617 (686)
|+..|+++++..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999998743
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=3.1e-09 Score=116.57 Aligned_cols=429 Identities=9% Similarity=0.009 Sum_probs=295.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCC---hhHHHHHHHhcccCCC-CCCH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARM---GDDLMVLFKNLPQSKE-FRDA 235 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~ 235 (686)
++.+...+..++..+...+.++.|..+|+.++...|.. ...|..-+..-.+.|. ++.+..+|++...... ++++
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~--~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLM--ANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 44588999999999999999999999999999987644 4888888888888888 9999999999887431 3789
Q ss_pred HHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHH---------HcCCCHHHHHHHHH
Q 044251 236 HVYNAAISGLFWCGRY--------DDAWKAYEAMEA-NNV-RPD-HVTCSIMITAMR---------KNGRSAKEAWEFFE 295 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~---------~~g~~~~~a~~~~~ 295 (686)
..|..-+....+.++. +...++|+.... .|. .++ ...|...+.-.. ..++ .+.+..+|+
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~-~~~~R~iy~ 218 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR-VQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH-HHHHHHHHH
Confidence 9999988877776653 334578887654 466 554 567877776543 2333 678899999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC--CC----C-----------C-----C
Q 044251 296 KMNRKGVKLSQEVVGALMKSFCD-------------EGLKNEALIIQMEMEKK--GI----P-----------S-----N 340 (686)
Q Consensus 296 ~m~~~~~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~~~~~--g~----~-----------~-----~ 340 (686)
+++......-..+|......-.. ...++.|...+.++... ++ + | +
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 99864222223344322221111 11233444555443211 11 1 1 0
Q ss_pred ---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCC
Q 044251 341 ---AIVYNTLINAYCKSN-------QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVE-KLLLELQDMGLEP 409 (686)
Q Consensus 341 ---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~p 409 (686)
...|...+..--..+ ..+.+..+|++.+..- .-....|...+..+...|+.++|. .+|++.... +..
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC
Confidence 245666665433322 1345667888887763 337778888888888899998996 999999864 233
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC---------CC------------ChhhHhhhHHHHHhcCCHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI---------KP------------TSHSYTALIHAYSVGGWHEKAYA 468 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~---------~~------------~~~~~~~li~~~~~~g~~~~A~~ 468 (686)
+...+...+...-+.|+. +.|..+|+.+..... .| ...+|...+....+.|..+.|..
T Consensus 377 s~~Lwl~~a~~ee~~~~~-e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKI-PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 555566677777777775 889999999876420 12 13468888888888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 469 AFENMLREEIKPSIETYTALLDAFRRS-GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
+|....+.........|...+..-.+. ++.+.|..+|+..++. .+.+...+...++.....|+.+.|..+|++.....
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999998751112233343333322333 4589999999999987 46678888899998889999999999999988764
Q ss_pred CCC--CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 548 LQP--TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAF 597 (686)
Q Consensus 548 ~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 597 (686)
..+ ....|...+..-.+.|+.+.+..+.+++.+. .|+......++.-|
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 322 3567888888888999999999999999975 45544444444433
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=8.5e-12 Score=126.24 Aligned_cols=277 Identities=12% Similarity=0.061 Sum_probs=185.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 044251 308 VVGALMKSFCDEGLKNEALIIQMEMEKKGIPSN----AIVYNTLINAYCKSNQLEEAEGLFQEMKTK----GLKP-TSAT 378 (686)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~ 378 (686)
.+......+...|++++|...++++.+.... + ...+..+...|...|++++|...+++.... +..+ ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4445566777788888888888887776322 3 356677777788888888888888776542 1111 1335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHH
Q 044251 379 FNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYS 458 (686)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (686)
+..+..++...|++++|...+.+..+.... .++. .....++..+...|.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~----------------~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRE---------------LNDK----------------VGEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------TTCH----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH---------------hcCc----------------hHHHHHHHHHHHHHH
Confidence 666777777777777777777766432100 0000 001234555556666
Q ss_pred hcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044251 459 VGGW--------------------HEKAYAAFENMLRE----EIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV 513 (686)
Q Consensus 459 ~~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 513 (686)
..|+ +++|...+++.... +..+ ...++..+...+...|+++.|...+++.++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6666 77777777665432 1111 134677777888888999998888888775411
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHC--
Q 044251 514 -----EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-PT----LMTYNMLMNAYGRGGQTSKLPQLLKEMATL-- 581 (686)
Q Consensus 514 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-- 581 (686)
.....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...++++...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 112347788888899999999999999887643211 12 567888899999999999999999988753
Q ss_pred --CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 582 --NIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 582 --g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+-.+ ...++..+..+|...|++++|..+++++++.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 1457788899999999999999999999875
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=7.2e-12 Score=131.28 Aligned_cols=278 Identities=13% Similarity=0.046 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCH
Q 044251 271 VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQ----EVVGALMKSFCDEGLKNEALIIQMEMEKK----G-IPSNA 341 (686)
Q Consensus 271 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~ 341 (686)
..+..+...+...|+ +++|+.+|+++++.+.. +. .++..+...|...|++++|...+++..+. + .+...
T Consensus 49 ~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGD-CRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCc-HHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345556667888898 99999999999987543 33 57888999999999999999999988654 1 12245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 044251 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTK----GLKP-TSATFNILMDAYSRRMQ-----------------PEIVEKLL 399 (686)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~ 399 (686)
.++..+...|...|++++|...|++..+. +-.+ ...++..+..+|...|+ +++|..++
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888999999999999999999987654 1111 23467778888888888 55555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 044251 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI- 478 (686)
Q Consensus 400 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 478 (686)
.+..+ ++..... ......++..+...|...|++++|+..+++..+...
T Consensus 207 ~~al~-----------------------------~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 207 QENLK-----------------------------LMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHH-----------------------------HHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----------------------------HHHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 44322 1111100 001234677778888888888888888888765311
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-
Q 044251 479 KPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE-----GTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL- 548 (686)
Q Consensus 479 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 548 (686)
..+ ..++..+...+...|++++|...+++.++.... ....++..+...|...|++++|...+++......
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 012 236777888888899999999998888765211 1256778888899999999999999998764311
Q ss_pred ----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 549 ----QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 549 ----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
.....++..+..+|...|++++|.++++++.+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 112457888999999999999999999998863
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=1.7e-10 Score=115.71 Aligned_cols=218 Identities=14% Similarity=0.016 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-------ccCCh-------hHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 181 GCCLYFYEWMRLQEPSLVSPRACSVLFPVLG-------RARMG-------DDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 181 ~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
++|+..|+.++...|.. +..|...+..+. +.|++ ++|+.+|++....-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~~--~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHH--PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 68889999999987644 588888888775 35886 899999999887323467889999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHH
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPD-HV-TCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFC-DEGLKN 323 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~ 323 (686)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|+ +++|..+|+++++.+. .+...|...+.... ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999885 554 33 78888888888888 9999999999998753 34555554444432 369999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG-LKP--TSATFNILMDAYSRRMQPEIVEKLLL 400 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 400 (686)
+|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998873 4478899999999999999999999999998863 344 46688888888889999999999999
Q ss_pred HHHHc
Q 044251 401 ELQDM 405 (686)
Q Consensus 401 ~m~~~ 405 (686)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98775
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=2.6e-10 Score=114.25 Aligned_cols=218 Identities=11% Similarity=-0.024 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-------CCCCh------HHHHHHHHHHHHH-cCCCCChhhHhhhHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYG-------RPRKM------SDMAADAFLRMKR-VGIKPTSHSYTALIHAYS 458 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~------~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~ 458 (686)
++|..+|+++.... .-+...|..+...+. ..|+. .++|..+|++... ..+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 56777777776642 225556655555553 23443 2567777777766 3322 4556777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HcCCHHH
Q 044251 459 VGGWHEKAYAAFENMLREEIKPS-IE-TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA-KQGQYLE 535 (686)
Q Consensus 459 ~~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 535 (686)
+.|++++|..+|+++++. .|+ .. .|..++..+.+.|+++.|..+|++.++.. +.+..+|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777763 333 23 66777777777777777777777777654 334444444333322 2577777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 536 ARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN-IKP--DSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 536 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
|..+|+++++.. +.+...|..++..+.+.|++++|..+|+++.... +.| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777776553 3366777777777777777777777777777642 344 355667777777777777777777777
Q ss_pred HHHC
Q 044251 613 MVKS 616 (686)
Q Consensus 613 m~~~ 616 (686)
+++.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=2.5e-11 Score=122.69 Aligned_cols=278 Identities=15% Similarity=0.064 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCH
Q 044251 271 VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS----QEVVGALMKSFCDEGLKNEALIIQMEMEKK----GIP-SNA 341 (686)
Q Consensus 271 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~ 341 (686)
..+......+...|+ +++|..+|+++++.... + ..++..+...+...|++++|...++..... +.. ...
T Consensus 6 ~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGD-CRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345555667788898 99999999999987533 3 367888999999999999999999987643 211 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 044251 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGL-KPT----SATFNILMDAYSRRMQ--------------------PEIVE 396 (686)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~ 396 (686)
.++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788899999999999999999998765311 112 2367777788888777 55555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 397 KLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE 476 (686)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 476 (686)
..+++... ++..... .......+..+...|...|++++|...+++..+.
T Consensus 164 ~~~~~a~~-----------------------------~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 164 DLYEENLS-----------------------------LVTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHH-----------------------------HHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------------------HHHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55544321 1111100 0012346777788888899999999998887653
Q ss_pred CC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 477 EI-KPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE-G----TRVTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 477 ~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
.. .++ ..++..+...+...|++++|...+++.++.... . ...++..+...|...|++++|...++++...
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 10 111 246778888889999999999999888754211 1 1557788888999999999999999987643
Q ss_pred CCC-C----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 547 GLQ-P----TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 547 ~~~-p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
... . ...++..+...|.+.|++++|...++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 1 1457788999999999999999999998864
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=6.5e-11 Score=122.77 Aligned_cols=167 Identities=11% Similarity=0.056 Sum_probs=129.2
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-CCC
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEI-KPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSE----KV-EGT 516 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~ 516 (686)
..+++.+..+|...|++++|+..|++..+... .++ ..++..+..+|...|+++.|...+++.++. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 35678888899999999999999988875311 112 247888889999999999999999998873 32 445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHCCCCCC-HH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQPTLMTYNMLMNAYGRGGQ---TSKLPQLLKEMATLNIKPD-SV 588 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~ 588 (686)
..++..+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +..|+ ..
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHH
Confidence 778899999999999999999999987643 211123346778888889998 77777777765 33343 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.+..+...|...|++++|..+++++++.
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7788999999999999999999998753
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=3.2e-11 Score=128.65 Aligned_cols=216 Identities=11% Similarity=-0.063 Sum_probs=183.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCCh-hHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 179 LLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMG-DDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKA 257 (686)
Q Consensus 179 ~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (686)
.+++|+..++......+ .+...+..++.++...|++ ++|+..|++..... +.+..+|..+..+|.+.|++++|++.
T Consensus 83 ~~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35778888887776655 4568999999999999999 99999999987743 36789999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 044251 258 YEAMEANNVRPDHVTCSIMITAMRKN---------GRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE--------G 320 (686)
Q Consensus 258 ~~~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g 320 (686)
|++..+. .|+...+..+...+... |+ +++|++.|+++++.... +...+..+..+|... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 9999987 57788888888888888 87 99999999999987543 688899999999998 9
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIP--SNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKL 398 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 398 (686)
++++|...|+...+.... .+...|..+..+|...|++++|++.|++..+.... +...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987431 48899999999999999999999999999886443 566788888999999988888876
Q ss_pred HHHH
Q 044251 399 LLEL 402 (686)
Q Consensus 399 ~~~m 402 (686)
+..+
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 5443
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=3.7e-10 Score=103.46 Aligned_cols=168 Identities=14% Similarity=0.033 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGAL 312 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (686)
.++.+|..+...|.+.|++++|++.|++..+.. +-+..+|..+...+...|+ +++|+..+..+...... +...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGL-PNDAIESLKKFVVLDTT-SAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCC-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCch-hHHHHHHH
Confidence 355566666666666666666666666665542 2345566666666666666 66666666666655322 45556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 313 MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQP 392 (686)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (686)
...+...++++.|...+....... +.+...+..+..+|.+.|++++|++.|++..+.... +..+|..+..++.+.|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCH
Confidence 666666677777777666666653 335666666777777777777777777776665332 555666677777777777
Q ss_pred HHHHHHHHHHHHc
Q 044251 393 EIVEKLLLELQDM 405 (686)
Q Consensus 393 ~~a~~~~~~m~~~ 405 (686)
++|.+.|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 7777777766653
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=2.5e-11 Score=121.52 Aligned_cols=246 Identities=14% Similarity=0.103 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 044251 340 NAIVYNTLINAYCKSNQLEEAEGLFQEMKTK-------GLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAK 412 (686)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 412 (686)
+..++..+...+...|++++|+.+|+++.+. ........+..+..++...|++++|..+++++.+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 4567788888888899999999888887763 122234567788888889999999998888775420
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHH
Q 044251 413 SYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE------EIKP-SIETY 485 (686)
Q Consensus 413 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~ 485 (686)
.............++..+...|...|++++|+..++++.+. +..| ....+
T Consensus 100 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 100 -----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp -----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 00000000012334555556666666666666666665543 1111 23455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-------CCC-
Q 044251 486 TALLDAFRRSGDTGMMMKIWKLMMSE------K-VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG-------LQP- 550 (686)
Q Consensus 486 ~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~p- 550 (686)
..+...+...|++++|..+++++++. + .+....++..+...|...|++++|...++++.+.. ..+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 66666666677777777777666654 1 12234466677777777777777777777765421 111
Q ss_pred ------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 551 ------TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 551 ------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
....+..+...+...+.+.++...++..... .| +..++..+..+|.+.|++++|.++++++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1222333444455667777788888777643 33 4677888999999999999999999998763
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=9.4e-11 Score=125.00 Aligned_cols=213 Identities=11% Similarity=-0.019 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFEN 472 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (686)
+++...+....... ..+...+..+...+...|+..++|...|++..+..+. +...|..+..+|...|++++|+..|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444433321 2245555555555555544424566666666665433 566788888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 044251 473 MLREEIKPSIETYTALLDAFRRS---------GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ--------GQYLE 535 (686)
Q Consensus 473 m~~~~~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 535 (686)
..+. .|+...+..+..++... |++++|+..++++++.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 8874 56677888888888888 88889999998888876 56778888888888888 88999
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 536 ARDVVSEFGKIGLQ--PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 536 A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
|...|+++.+.... .+...|..+..+|...|++++|.+.|+++.+. .| +...+..+..++...|++++|++.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998876521 47888999999999999999999999998874 44 577788888888888988888876544
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=3.8e-10 Score=116.99 Aligned_cols=130 Identities=10% Similarity=-0.032 Sum_probs=97.2
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCHH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLRE----EI-KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE----KVEGTRV 518 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 518 (686)
.++..+..+|...|++++|+..+++..+. +. +....++..+...+...|+++.|...+++.++. +.+....
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46777888888999999999998888762 22 334577888888899999999999998888764 2122233
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQ---YLEARDVVSEFGKIGLQP-TLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 519 ~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+..+...|...|+ +++|..++++. +..+ ....+..+...|...|++++|...++++.+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667778888888 77777777764 2222 345677889999999999999999998874
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=4.8e-10 Score=102.38 Aligned_cols=166 Identities=10% Similarity=0.045 Sum_probs=145.2
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDG 526 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 526 (686)
...|..+...+...|++++|+..++++... .+.+...+..+...+...|+++.|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345677788899999999999999988765 34467888999999999999999999999999875 5678889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 527 FAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 606 (686)
+...|++++|...++++.+.. +.+...+..++.+|...|++++|..+++++.... +.+..++..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998775 4588899999999999999999999999998753 34688999999999999999999
Q ss_pred HHHHHHHHHC
Q 044251 607 FFYHKQMVKS 616 (686)
Q Consensus 607 ~~~~~~m~~~ 616 (686)
..+++++++.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998764
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=4.9e-11 Score=119.33 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------
Q 044251 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEAN-------NVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK------ 300 (686)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~------ 300 (686)
+..++..+...+...|++++|+.+|+++.+. ..+.....+..+...+...|+ +++|...++++++.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK-YKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhC
Confidence 4566777777777777777777777776552 112233456666666777776 77777777777653
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--
Q 044251 301 G-VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK------GI-PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK-- 370 (686)
Q Consensus 301 ~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 370 (686)
+ ......++..+...+...|++++|...++++.+. +. +....++..+...+...|++++|+++|+++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1223456777777888888888888888777654 11 223456777888888888888888888887664
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 371 ----GLKP-TSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 371 ----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
+..| ...++..+..++...|++++|..+++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 234677788888888999888888888765
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=3.7e-09 Score=108.98 Aligned_cols=274 Identities=9% Similarity=-0.039 Sum_probs=150.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHH
Q 044251 310 GALMKSFCDEGLKNEALIIQMEMEKKGIPSNAI----VYNTLINAYCKSNQLEEAEGLFQEMKTKGL-KPTS----ATFN 380 (686)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~ 380 (686)
......+...|++++|...++.........+.. +++.+...+...|++++|...+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445556677777777776666543222221 345555566666777777766666544210 0111 1234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCC--C-ChhhHhhhHHHH
Q 044251 381 ILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIK--P-TSHSYTALIHAY 457 (686)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~~~~li~~~ 457 (686)
.+..++...|++++|...+++..+.. ...+.. | ....+..+...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~--------------------------------~~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLI--------------------------------NEQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------------HHTTCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH--------------------------------HHhccccCcHHHHHHHHHHHHH
Confidence 45555666666666666665554310 000100 1 123444555666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHH----HHHHHH
Q 044251 458 SVGGWHEKAYAAFENMLREEIK----PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEG--TRVTFN----ILLDGF 527 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~li~~~ 527 (686)
...|++++|...+++....... ....++..+...+...|++++|...+++.......+ ...... ..+..+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 6667777777777666543211 123455666666677777777777777665431111 111111 223345
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQP---TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKPDS-VTYSTMIYAFVR 599 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~~~~~li~~~~~ 599 (686)
...|++++|...+++.......+ ....+..+...+...|++++|..+++++... |..++. .++..+..++..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 67777777777777765433211 1234566677777778888887777776532 211122 255666677777
Q ss_pred cCCHHHHHHHHHHHHH
Q 044251 600 VRDFKRAFFYHKQMVK 615 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~ 615 (686)
.|++++|...+++++.
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 8888888888777764
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=4.4e-10 Score=124.77 Aligned_cols=165 Identities=13% Similarity=0.064 Sum_probs=143.0
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
+..+|+.|..+|.+.|++++|+..|++.++.. +-+..++..+..+|.+.|++++|+..|++.++.. +.+..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46778889999999999999999999998852 3356888899999999999999999999999886 667889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFK 604 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~ 604 (686)
+|...|++++|++.|++.++.. +-+...|+.+..+|.+.|++++|++.|+++++. .| +...+..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999988876 447889999999999999999999999999874 56 4788899999999999999
Q ss_pred HHHHHHHHHHH
Q 044251 605 RAFFYHKQMVK 615 (686)
Q Consensus 605 ~A~~~~~~m~~ 615 (686)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=1.8e-09 Score=102.72 Aligned_cols=200 Identities=11% Similarity=0.074 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALL 489 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 489 (686)
++..+......+...|+. ++|...|+...+..+.++...+..+..++...|++++|+..|++..+.. +.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNY-AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 445555555556666555 6677777766666543455555556666667777777777776666531 12345566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTR-------VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQP--TLMTYNMLMN 560 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~ 560 (686)
.++...|++++|...+++.++.. +.+. .+|..+...+...|++++|...|+++.+.. +. +...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 66666777777777777666654 3333 345566666666677777777776666543 22 2455666666
Q ss_pred HHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 561 AYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 561 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
+|...|+ .+++++...+ ..+...|.... ....+.+++|+.+++++++.. |+..
T Consensus 162 ~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~ 214 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRT 214 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCH
Confidence 6654432 3344444332 22333333332 233455689999999998754 5543
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=3.7e-09 Score=96.38 Aligned_cols=164 Identities=13% Similarity=0.002 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..+..++..+...|++++|+..|+++.... +.+..++..++..+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445556666777777777777777766532 2566777777777777777777777777766542 33455666666666
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
...|+ +++|.+.++++.+... .+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|
T Consensus 87 ~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQK-YDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcC-HHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 66666 6677777766665532 245555666666666666666666666665553 23455566666666666666666
Q ss_pred HHHHHHHHH
Q 044251 361 EGLFQEMKT 369 (686)
Q Consensus 361 ~~~~~~m~~ 369 (686)
...++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=1e-08 Score=105.64 Aligned_cols=302 Identities=12% Similarity=0.029 Sum_probs=197.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH----HHHH
Q 044251 275 IMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQE----VVGALMKSFCDEGLKNEALIIQMEMEKKGIP-SNA----IVYN 345 (686)
Q Consensus 275 ~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~----~~~~ 345 (686)
.+...+...|+ +++|..++++.+......+.. ++..+...+...|++++|...+++....... .+. .++.
T Consensus 19 ~~a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGN-PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33445567787 999999999998865333332 5667778889999999999999987654111 122 3466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 346 TLINAYCKSNQLEEAEGLFQEMKTK----GLK--PT-SATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLI 418 (686)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 418 (686)
.+...+...|++++|...+++..+. +.. |. ...+..+..++...|++++|..++++..+.....
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------- 168 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--------- 168 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---------
Confidence 7888899999999999999987653 221 22 3456668888889999999999988876542211
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHH
Q 044251 419 SAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS--IETYT----ALLDAF 492 (686)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~----~ll~~~ 492 (686)
+ ......++..+...+...|++++|...+++.......++ ..... ..+..+
T Consensus 169 ------~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 169 ------Q-----------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp ------C-----------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred ------C-----------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 0 001123455666777788888888888887765311111 11111 223446
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHh
Q 044251 493 RRSGDTGMMMKIWKLMMSEKVEG---TRVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQPTL-MTYNMLMNAYGR 564 (686)
Q Consensus 493 ~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~li~~~~~ 564 (686)
...|+++.|...++........+ ....+..+...+...|++++|...+++.... +..++. .++..+..++..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 67888888888888877543221 1335667778888889999999988886532 211122 366677888889
Q ss_pred cCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 565 GGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 565 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
.|+.++|...+++..... +. ...+..+...| +....+++.+....
T Consensus 306 ~g~~~~A~~~l~~al~~~--~~----~g~~~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALKLA--NR----TGFISHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HTCHHHHHHHHHHHHHHH--HH----HCCCHHHHTTH--HHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHh--cc----ccHHHHHHHcc--HHHHHHHHHHHhCC
Confidence 999999999998887421 00 11122333344 45556666665543
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=3.8e-09 Score=109.15 Aligned_cols=166 Identities=15% Similarity=0.094 Sum_probs=126.6
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLRE----EIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSE----KVEGTR 517 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~ 517 (686)
..+++.+..+|...|++++|+..|++..+. +..+ ...++..+..+|...|+++.|...+++.++. +.+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 456778888899999999999999887653 1111 1256778888999999999999999998872 223447
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHCCCCCC-HHH
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGL----QPTLMTYNMLMNAYGRGGQ---TSKLPQLLKEMATLNIKPD-SVT 589 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~~ 589 (686)
.++..+...|.+.|++++|...+++..+... +.....+..+...|...|+ +.+|+.++++. +..|+ ...
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHH
Confidence 7888999999999999999999999875421 2224456777777778888 77777777762 33333 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
+..+...|...|++++|..+++++++
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67888999999999999999998875
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=5.5e-09 Score=99.33 Aligned_cols=201 Identities=8% Similarity=-0.035 Sum_probs=122.4
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
|...+......+...|++++|+..|++.++....++...+..+..++...|++++|+..+++.++.. +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4456666677777777777777777777665333566666666667777777777777777777654 445566666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTL-------MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD---SVTYSTMIY 595 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~li~ 595 (686)
.|...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|+++.+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 7777777777777777766554 2244 34666666666666777777777666643 443 345555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhh
Q 044251 596 AFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKR 675 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~ 675 (686)
++...| ..+++++...+ ..+...|.... ....+.-++|+..|.++.+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--------------------------~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--------------------------AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHhhc
Confidence 554333 23334433322 11222221111 01223458899999999999
Q ss_pred CCCCccc
Q 044251 676 HPRTQSH 682 (686)
Q Consensus 676 ~p~~~~~ 682 (686)
.|+++++
T Consensus 210 ~p~~~~~ 216 (228)
T 4i17_A 210 SPNRTEI 216 (228)
T ss_dssp CTTCHHH
T ss_pred CCCCHHH
Confidence 9988764
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=1.8e-09 Score=119.81 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALM 313 (686)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li 313 (686)
++.+|+.|..+|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|+ +++|++.|+++++.... +...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~-~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGK-LQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34455555555555555555555555554431 2234445555555555555 55555555555554321 344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 314 KSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPE 393 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 393 (686)
.+|.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|++.|++.++.... +...|..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 555555555555555555555422 24555555555555555555555555555554322 3445555555555555555
Q ss_pred HHHHHHHHHH
Q 044251 394 IVEKLLLELQ 403 (686)
Q Consensus 394 ~a~~~~~~m~ 403 (686)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=1.6e-08 Score=104.48 Aligned_cols=199 Identities=10% Similarity=0.043 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CC-CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc----CCC-CC
Q 044251 378 TFNILMDAYSRRMQPEIVEKLLLELQDMGL-----EP-NAKSYTCLISAYGRPRKMSDMAADAFLRMKRV----GIK-PT 446 (686)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~p-~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~ 446 (686)
++..+..+|...|+++.|...+.+..+... .+ ...+++.+...|...|+. +.|...|++..+. +.. ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~-~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHY-DKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHcCCHHHH
Confidence 344444444455555555444444432100 00 122333344444444443 4455544444332 100 12
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCCHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLRE----EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEK----VEGTRV 518 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~ 518 (686)
..++..+..+|...|++++|+..+++.... +.+....++..+...+.+.|+++.|...+++.++.. .+....
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 346777888899999999999999888761 222336778888889999999999999999988752 222344
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQ---YLEARDVVSEFGKIGLQP-TLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 519 ~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.++.+...|...++ +.+|+..+++. +..+ ....+..+...|...|++++|...|+++.+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666667777788 77777777752 2222 244667888999999999999999998864
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=8e-10 Score=108.57 Aligned_cols=228 Identities=12% Similarity=0.050 Sum_probs=150.4
Q ss_pred hcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc------CCCC-ChhhHhhh
Q 044251 388 RRMQPEIVEKLLLELQDM-------GLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV------GIKP-TSHSYTAL 453 (686)
Q Consensus 388 ~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l 453 (686)
..|++++|+.++++..+. ........+..+...|...|+. ++|...|+++... +-.| ...++..+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY-KEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777777666542 1122355677777778888776 7798888887765 2112 35678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHH
Q 044251 454 IHAYSVGGWHEKAYAAFENMLRE------EI-KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE------K-VEGTRVT 519 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 519 (686)
...|...|++++|+..|++.... .. +....++..+...+...|++++|...++++++. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999888764 11 223467788888888899999999999888865 1 1234567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHH--H-CC-CCC-C
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKI-------GLQ-PTLMTYNMLMNAYGRGGQTSKLPQLLKEMA--T-LN-IKP-D 586 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~-~g-~~p-d 586 (686)
+..+...|...|++++|..+++++.+. ... .....|..+...+...+....+..+..... . .+ ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888888888999999999999887653 111 123344444444444444333332211111 1 11 112 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 587 SVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
..++..+..+|...|++++|..+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888999999999999999999998753
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=1.3e-08 Score=95.26 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=132.0
Q ss_pred HhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhcC
Q 044251 450 YTALIHAYSVGGWHEKAYAAFENMLREEIKPS-IETYTA----------------LLDAFRRSGDTGMMMKIWKLMMSEK 512 (686)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~ 512 (686)
+......+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|+..+++.++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 333455677788888888888888774 333 345555 8889999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHCCCCCCH--H
Q 044251 513 VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ--TSKLPQLLKEMATLNIKPDS--V 588 (686)
Q Consensus 513 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~--~ 588 (686)
+.+..++..+..+|...|++++|...|+++++.. +.+..+|..+..+|...|+ ...+...++... .|+. .
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQY 158 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhH
Confidence 6688999999999999999999999999999876 4488999999999876654 344555565554 3443 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 631 (686)
.+..+..++...|++++|+..|+++++ +.|+......+.++
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~i 199 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 455566777889999999999999986 45888766655554
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=3e-08 Score=84.71 Aligned_cols=129 Identities=16% Similarity=0.247 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 564 (686)
+..+...+...|+++.|..+++.+.+.. +.+..++..++..+...|++++|..+++++...+ +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445555666666666666666665544 3455566666666666677777777777666554 3356666677777777
Q ss_pred cCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 565 GGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 565 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.|++++|.++++++.... +.+..++..++.++...|++++|..+++++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777776542 234666667777777777777777777777653
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=3.3e-09 Score=104.11 Aligned_cols=158 Identities=11% Similarity=0.007 Sum_probs=90.8
Q ss_pred hcCChhHHHHHHHHHHhc-----C-CCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccC-------CCCCCHHHHHHHH
Q 044251 176 NDGLLGCCLYFYEWMRLQ-----E-PSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQS-------KEFRDAHVYNAAI 242 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~-----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li 242 (686)
..|++++|+.+|+.++.. . .......++..++.++...|++++|+..|++.... ..+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456777777777776653 1 11223456666667777777777777777665432 1113455666667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN------NVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK------GVKL-SQEV 308 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~------~~~~-~~~~ 308 (686)
..|...|++++|++.|++.... ...| ...++..+...+...|+ +++|.++++++++. +..| ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 7777777777777777666543 0012 23445555556666665 66666666666553 1111 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 309 VGALMKSFCDEGLKNEALIIQMEMEK 334 (686)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (686)
+..+...+...|++++|...++++.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666666666666554
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.96 E-value=8.5e-07 Score=94.31 Aligned_cols=374 Identities=11% Similarity=-0.041 Sum_probs=190.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR-YDDAWKAY 258 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 258 (686)
+..|..+|+.++..-|. |+++.+..+|++... .. |++.+|...+....+.+. .+....+|
T Consensus 11 i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~-~~-ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLK-KS-YNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHST-TC-CCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred hHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhc-cC-CCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 66667777776655332 667777777777666 22 577777777777766663 34456667
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------c
Q 044251 259 EAMEAN-NVR-PDHVTCSIMITAMR----KNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD-------------E 319 (686)
Q Consensus 259 ~~m~~~-g~~-p~~~~~~~ll~~~~----~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------------~ 319 (686)
+..... |.. .+...|...+.-+. ..++ .+.+..+|++++.....--...|......-.. .
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~-~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR-IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH-HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH-HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 666543 422 35566666665432 2233 66677777777764221111222222211100 1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSN--Q-----LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQP 392 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (686)
+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++.... -+...|...+..+.+.|+.
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~ 229 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCH
Confidence 122233333333332100013345555444422210 0 3446667777766432 3456677677777777888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFEN 472 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (686)
+.|..+|++.... |...........+.... + +++.+.+. +.. ...+.+ .
T Consensus 230 ~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~----~~~~l~~~---------------~~~-~~~~~~-----~ 278 (493)
T 2uy1_A 230 EKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---A----VYGDLKRK---------------YSM-GEAESA-----E 278 (493)
T ss_dssp HHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---H----HHHHHHHH---------------TC--------------
T ss_pred HHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---H----HHHHHHHH---------------HHh-hccchh-----h
Confidence 8888888877766 33222111111111110 1 12222111 000 000000 0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCC
Q 044251 473 MLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQG-QYLEARDVVSEFGKIGLQPT 551 (686)
Q Consensus 473 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~ 551 (686)
. .. .......|...+..+.+.++.+.|..+|+.+ ... ..+..+|...+..-...+ +.+.|..+|+...+.. +.+
T Consensus 279 ~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~ 353 (493)
T 2uy1_A 279 K-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDS 353 (493)
T ss_dssp ---C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTC
T ss_pred h-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCC
Confidence 0 00 0001234555555555666777777777777 221 234444443332222223 5777888887776543 224
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 552 LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 552 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
+..|...+....+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++++
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5556666666667777777887777762 2456666666655667888888887777764
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=5.5e-08 Score=83.05 Aligned_cols=130 Identities=19% Similarity=0.248 Sum_probs=113.3
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
.|..+...+...|++++|+.+++++.... +.+...+..+...+...|+++.|...++++.... +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 56778888999999999999999998763 3467788888899999999999999999998876 567788889999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
..|++++|..+++++.+.. +.+..++..++.++.+.|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999988765 447888999999999999999999999998864
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=3e-07 Score=90.50 Aligned_cols=232 Identities=13% Similarity=0.030 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccC--ChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 166 ECVQLLELMANDGLL-GCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRAR--MGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~-~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
.+...+..+.+.|.+ ++|+..++.++...|... .+|+....++...| ++++++..++.+....+ .+..+|+.-.
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~--taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~ 110 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHY--TIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHH--HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHH
Confidence 344556666666666 599999999999988665 78888899999988 99999999999887443 6777888776
Q ss_pred HHH----HHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 243 SGL----FWC---GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAK--EAWEFFEKMNRKGVKLSQEVVGALM 313 (686)
Q Consensus 243 ~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--~a~~~~~~m~~~~~~~~~~~~~~li 313 (686)
.++ ... +++++++++++.+.+.. +-+-.+|+.-.-.+...+. ++ ++++.++++++.++. |...|+...
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~d~~-N~sAW~~R~ 187 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDTDLK-NNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 666 555 78999999999998764 5577889888888888887 77 899999999988755 788888877
Q ss_pred HHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHH
Q 044251 314 KSFCDEGL------KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEE-AEGLFQEMKTKG--LKPTSATFNILMD 384 (686)
Q Consensus 314 ~~~~~~g~------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~ll~ 384 (686)
..+...+. ++++++.++.++...+ -|...|+.+-..+.+.|+... +..+.+++.+.+ -..+...+..++.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 77777776 8899999999888754 489999998888888887444 445666555433 1236778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 044251 385 AYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 385 ~~~~~~~~~~a~~~~~~m~~ 404 (686)
++.+.|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999875
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=5.6e-08 Score=94.45 Aligned_cols=172 Identities=10% Similarity=0.048 Sum_probs=126.7
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS---IETYTALLDAFRRSGDTGMMMKIWKLMMSEKV--EGTRVTF 520 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~ 520 (686)
+...+..+...+.+.|++++|+..|+++.... +.+ ...+..+..++...|+++.|...|+.+++... +....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45556666777788888888888888887752 223 56677777788888888888888888877642 1234566
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcCCccHHHHHH
Q 044251 521 NILLDGFAK--------QGQYLEARDVVSEFGKIGLQPTLMTY-----------------NMLMNAYGRGGQTSKLPQLL 575 (686)
Q Consensus 521 ~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~A~~l~ 575 (686)
..+..++.. .|++++|...|+++++.... +...+ ..+...|.+.|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 667777777 88888888888887765422 32333 56688899999999999999
Q ss_pred HHHHHCCCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHH
Q 044251 576 KEMATLNIKPD----SVTYSTMIYAFVRV----------RDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 576 ~~m~~~g~~pd----~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
+++.+. .|+ ...+..++.+|... |++++|+..++++++.. |+..
T Consensus 172 ~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 229 (261)
T 3qky_A 172 EAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSP 229 (261)
T ss_dssp HHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCT
T ss_pred HHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCCh
Confidence 999874 343 46788888888876 89999999999999854 6654
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.90 E-value=5.3e-08 Score=96.48 Aligned_cols=96 Identities=9% Similarity=-0.076 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----
Q 044251 308 VVGALMKSFCDE-GLKNEALIIQMEMEKKGIPS-N----AIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTS----- 376 (686)
Q Consensus 308 ~~~~li~~~~~~-g~~~~A~~~~~~~~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----- 376 (686)
++..+...|... |++++|...|++..+..... + ..+++.+...|.+.|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 344444444443 45555544444443321000 0 233444555555555555555555555443221111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 377 -ATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 377 -~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
..|..++.++...|++++|...|++..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 133444445555555555555555544
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.89 E-value=6.2e-08 Score=91.80 Aligned_cols=196 Identities=10% Similarity=-0.015 Sum_probs=121.6
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK-PS-IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTR--VTFN 521 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 521 (686)
+...+..+...+.+.|++++|+..|+++...... +. ...+..+..++.+.|+++.|+..|+.+++....... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677788888899999999888875321 11 356777788888888888888888888876532221 2444
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 522 ILLDGFAK------------------QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 522 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
.+..++.. .|++++|...|+++++.. +-+...+..+.... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 44444443 345555555555555432 11222221111100 000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchh
Q 044251 584 KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKS----YEKLRSILDVKVATKNRRDKSAILGIINSKMGMVK 659 (686)
Q Consensus 584 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (686)
......+...+.+.|++++|+..++++++.. |+... +..++.++ ...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~------------------------~~~ 197 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAY------------------------RQM 197 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHH------------------------HHT
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHH------------------------HHc
Confidence 0112356678889999999999999999854 55432 22222222 144
Q ss_pred hcccchhHHHHHHHhhCCCCccccCCC
Q 044251 660 AKKKGKKDEFWKYKKRHPRTQSHAHNG 686 (686)
Q Consensus 660 ~~~~~a~~~f~~~~~~~p~~~~~~~~~ 686 (686)
|..++|++.|.+....+|++-.||||.
T Consensus 198 g~~~~A~~~~~~l~~~~~~~~~~~~~~ 224 (225)
T 2yhc_A 198 QMNAQAEKVAKIIAANSSNTLEHHHHH 224 (225)
T ss_dssp TCHHHHHHHHHHHHHCCSCCCCCTTCC
T ss_pred CCcHHHHHHHHHHHhhCCCchhhcccC
Confidence 588999999999999999999988874
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=3.9e-07 Score=88.72 Aligned_cols=246 Identities=8% Similarity=-0.031 Sum_probs=163.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 044251 352 CKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMA 431 (686)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A 431 (686)
.-.|.+..++.-...+ ........-..+.+++...|++... ..-.|....+..+...+ .. + +
T Consensus 24 fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~-~----a 85 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DT-K----N 85 (310)
T ss_dssp HTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TT-T----C
T ss_pred HHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-cc-c----H
Confidence 3467777777633222 1122223334456777777766531 11234443444444333 22 1 5
Q ss_pred HHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 432 ADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI-KPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
...|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66677666554 34555566888899999999999999998877543 23567888889999999999999999999977
Q ss_pred cCCCC-----CHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 511 EKVEG-----TRVTFNILLDGFA--KQG--QYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 511 ~~~~~-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
. .| +..+...|+.++. ..| ++.+|+.+|+++.+. .|+..+...|+.++.+.|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 34 3455555655533 334 899999999998654 355334444555888999999999999976642
Q ss_pred -----CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 582 -----NI---KP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 582 -----g~---~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
+. .| |+.++..+|......|+ +|.++++++.+.. |+...
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~hp~ 288 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEHAF 288 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCCHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCChH
Confidence 10 14 57778777777777887 8899999998854 66553
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.89 E-value=5.6e-08 Score=94.46 Aligned_cols=213 Identities=10% Similarity=-0.031 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHhcccCCC--CCCHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVS-PRACSVLFPVLGRARMGDDLMVLFKNLPQSKE--FRDAHVY 238 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~ 238 (686)
-+...+......+.+.|++++|+..|+.++...|.... +.++..++.++.+.|++++|+..|+++....+ +....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 36677888899999999999999999999988775432 57888889999999999999999998876422 1235677
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 239 NAAISGLFW--------CGRYDDAWKAYEAMEANNVRPDH-VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVV 309 (686)
Q Consensus 239 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ 309 (686)
..+..++.. .|++++|+..|+++.+. .|+. .....+..... ....+ ...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~--------~~~~~-----------~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRE--------LRAKL-----------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHH--------HHHHH-----------HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHH--------HHHHH-----------HHHH
Confidence 888888888 89999999999998775 3432 22222111100 00000 1124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCC--
Q 044251 310 GALMKSFCDEGLKNEALIIQMEMEKKGIPS--NAIVYNTLINAYCKS----------NQLEEAEGLFQEMKTKGLKPT-- 375 (686)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~-- 375 (686)
..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+......
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 566778888889999998888888763321 345677777777765 888999999988887633211
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 044251 376 SATFNILMDAYSRRMQPEIV 395 (686)
Q Consensus 376 ~~~~~~ll~~~~~~~~~~~a 395 (686)
......+..++...++++.+
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 23455555555555555443
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.88 E-value=6.7e-08 Score=95.73 Aligned_cols=206 Identities=17% Similarity=0.171 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc----CCCC-ChhhHhhhHHHHHhcCCHHH
Q 044251 391 QPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV----GIKP-TSHSYTALIHAYSVGGWHEK 465 (686)
Q Consensus 391 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~ 465 (686)
++++|...|.+.. ..|...|+. ++|...|.+.... |-.+ ...+|+.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a~---------------~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQAA---------------TIYRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHH---------------HHHHHcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4777777777662 234445565 7788888776554 2111 14678888999999999999
Q ss_pred HHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHHcCCHH
Q 044251 466 AYAAFENMLREEIK-PS----IETYTALLDAFRRS-GDTGMMMKIWKLMMSEKVEG-T----RVTFNILLDGFAKQGQYL 534 (686)
Q Consensus 466 A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~ 534 (686)
|+..|++.+..... .+ ..++..+..+|... |++++|+..|++.++..... + ..+++.+...|...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999888663110 11 35778888888885 99999999999988653111 1 456888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--Hc
Q 044251 535 EARDVVSEFGKIGLQPTL------MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDS------VTYSTMIYAFV--RV 600 (686)
Q Consensus 535 ~A~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~~~~~li~~~~--~~ 600 (686)
+|...|+++.+....... ..|..++.++...|++++|...|++..+ +.|+. ..+..++.++. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999998876533221 2577788889999999999999998874 34432 13444556554 45
Q ss_pred CCHHHHHHHHHHHH
Q 044251 601 RDFKRAFFYHKQMV 614 (686)
Q Consensus 601 g~~~~A~~~~~~m~ 614 (686)
+++++|+..|+++.
T Consensus 254 ~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 254 EQLSEHCKEFDNFM 267 (292)
T ss_dssp TTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccCC
Confidence 67888888887664
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=5.9e-08 Score=90.72 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+.+.+......+...|++++|+..|+.+....|... ..+... ... . ........++.+.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~-----~~~-------------~-~~~~~~~~~~~lg 61 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT--EMYYWT-----NVD-------------K-NSEISSKLATELA 61 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH--HHHHHH-----HSC-------------T-TSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHh-----hhc-------------c-hhhhhHHHHHHHH
Confidence 445566678888899999999999999998866432 333330 000 0 0001223344466
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL- 321 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~- 321 (686)
.+|.+.|++++|+..|++..+.. +-+...+..+...+...|+ +++|+..|+++++..+. +..++..+...|...|.
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHH
Confidence 66666666666666666665542 2345566666666666666 66666666666665432 45566666655554443
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 322 -KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD 384 (686)
Q Consensus 322 -~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 384 (686)
...+...+..... ..|....+..+..++...|++++|...|++..+. .|+......+..
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 2333344443322 1222223344455556667777777777777654 455554444443
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=2.1e-07 Score=87.11 Aligned_cols=177 Identities=10% Similarity=0.045 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 044251 430 MAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG----DTGMMMKIW 505 (686)
Q Consensus 430 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~~~ 505 (686)
+|..+|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4778888888764 77888889999999999999999999998864 66777778887877 6 899999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCccHHHHHHH
Q 044251 506 KLMMSEKVEGTRVTFNILLDGFAK----QGQYLEARDVVSEFGKIGLQ-PTLMTYNMLMNAYGR----GGQTSKLPQLLK 576 (686)
Q Consensus 506 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~l~~ 576 (686)
++..+.+ +...+..|...|.. .+++++|+..|++..+.+.. .++..+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998765 66778888888877 88999999999998877621 127888899999988 789999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCCC
Q 044251 577 EMATLNIKPDSVTYSTMIYAFVRV-R-----DFKRAFFYHKQMVKSGQ 618 (686)
Q Consensus 577 ~m~~~g~~pd~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 618 (686)
+..+. ..+...+..|...|..- | ++++|+.+++++.+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99875 33556778888887653 3 89999999999998873
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=2.1e-06 Score=91.36 Aligned_cols=366 Identities=8% Similarity=-0.069 Sum_probs=210.7
Q ss_pred ccCC-hhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHH
Q 044251 212 RARM-GDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEA 290 (686)
Q Consensus 212 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a 290 (686)
+.|+ ++.|+.+|+..... . |. |+++.+..+|++.... .|++..|...+.-..+.+...+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~-~-P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL-Y-MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH-H-HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH-C-CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 3453 66777777776541 1 22 8899999999999885 689999999888877776434667
Q ss_pred HHHHHHHHHC-CC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 291 WEFFEKMNRK-GV-KLSQEVVGALMKSFC----DEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLF 364 (686)
Q Consensus 291 ~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 364 (686)
..+|+.++.. |. ..+...|...+..+. ..++++.+..+|+..+......-...|......- +......+.+++
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHH
Confidence 7888887764 43 336788888887654 3467888999999998742111112232222211 111222333332
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC-Ch-----HHHHHHHHHHH
Q 044251 365 QEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPR-KM-----SDMAADAFLRM 438 (686)
Q Consensus 365 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~-----~~~A~~~~~~~ 438 (686)
.+.. +.+..|..+++.+...-...+...|...+..-...+ +. .+.+..+|+++
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 2211 122223333332221100012334444444322210 11 23467788888
Q ss_pred HHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC-----
Q 044251 439 KRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMM-MKIWKLMMSEK----- 512 (686)
Q Consensus 439 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~~----- 512 (686)
....+. +...|...+..+.+.|+.++|..+|++.... +.+...+. .|+...+.+.. ..+++......
T Consensus 206 l~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 206 LDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 776443 5777888888888899999999999999886 33333222 22222111122 12222211000
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHCCCCCCHH
Q 044251 513 ---VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG-QTSKLPQLLKEMATLNIKPDSV 588 (686)
Q Consensus 513 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~ 588 (686)
......+|...+..+.+.+.++.|..+|+++ ... ..+...|-.....-...| +.+.|..+|+...+.- .-++.
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~ 355 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTL 355 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHH
Confidence 0112356777788777888999999999998 322 235555543333323333 6999999999998752 22456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
.+...+.-....|+.+.|..+|+++. .....+...++..
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE 394 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 66777777788999999999998862 2455555555544
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=4.2e-08 Score=88.95 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=40.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 290 AWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPS-NAIVYNTLINAYCKSNQLEEAEGLFQEMK 368 (686)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (686)
|...+++.++..+. +...+..+...+...|++++|...|+.+.+....+ +...+..+...+...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44555555543321 34555555555555555555555555555543321 23455555555656666666665555543
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=2.5e-08 Score=87.73 Aligned_cols=141 Identities=8% Similarity=-0.051 Sum_probs=76.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 044251 455 HAYSVGGWHEKAYAAFENMLREEIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQY 533 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 533 (686)
..+...|++++|+..++..... .| +...+..+...|...|+++.|+..|++.++.. +.+..+|..+..+|...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3344455666666666555432 12 22334455556666666666666666666554 44556666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 044251 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQL-LKEMATLNIKP-DSVTYSTMIYAFVRVR 601 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~g~~p-d~~~~~~li~~~~~~g 601 (686)
++|...|++..+.. +-+..+|..+...|.+.|++++|.+. ++++.+. .| ++.+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 66666666665554 22555666666666666666554443 3555542 34 3445554444444444
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.81 E-value=1.9e-08 Score=112.06 Aligned_cols=172 Identities=9% Similarity=-0.113 Sum_probs=112.1
Q ss_pred HccCChhHHHHHHHhcc--------cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044251 211 GRARMGDDLMVLFKNLP--------QSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRK 282 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 282 (686)
...|++++|++.|++.. . ..+.+...+..+...+.+.|++++|++.|++..+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV-DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC--------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc-ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45666666666666655 3 223556667777777777777777777777776542 3355666666677777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 283 NGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEG 362 (686)
Q Consensus 283 ~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 362 (686)
.|+ +++|++.|+++++.... +...+..+..++.+.|++++ ...|++..+... .+...|..+..+|.+.|++++|++
T Consensus 480 ~g~-~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGD-YDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTC-HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHH
Confidence 776 77777777777765432 45666777777777777777 777777776643 366777777777777788888877
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 044251 363 LFQEMKTKGLKPT-SATFNILMDAYSRRM 390 (686)
Q Consensus 363 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~ 390 (686)
.|++..+. .|+ ...+..+..++...+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 77776654 333 345555666654433
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=4.1e-07 Score=86.11 Aligned_cols=185 Identities=11% Similarity=-0.022 Sum_probs=129.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC--hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH-HHHH
Q 044251 411 AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT--SHSYTALIHAYSVGGWHEKAYAAFENMLREEIK-PSI-ETYT 486 (686)
Q Consensus 411 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~~ 486 (686)
...+..+...+...|+. ++|...|+.+....+... ...+..+..+|.+.|++++|+..|+++.+.... +.. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNW-RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34444555566677777 889999999998754322 357888899999999999999999999885322 111 2455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 044251 487 ALLDAFRR------------------SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL 548 (686)
Q Consensus 487 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 548 (686)
.+..++.. .|+.++|...|+.+++.. +.+..++.+..... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 55555554 578999999999999875 33333333221110 011111
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD----SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
....-.+...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|++.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112235677888999999999999999874 454 2568888999999999999999999888765
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.79 E-value=6.3e-07 Score=87.29 Aligned_cols=162 Identities=13% Similarity=0.013 Sum_probs=89.6
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCC-CCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHH
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGI-KPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKP-----SIETYTALL 489 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~ll 489 (686)
.+..++...|+. ++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+ ..| +..+...++
T Consensus 105 ~la~i~~~~g~~-eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 105 LLATAQAILGDL-DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHTCH-HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHH
Confidence 334444444443 445555554433332 11344555666677777777777777777765 344 244444454
Q ss_pred HHH--HHcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCCHHHHH
Q 044251 490 DAF--RRSG--DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG---------LQPTLMTYN 556 (686)
Q Consensus 490 ~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~p~~~~~~ 556 (686)
.++ ...| ++..|..+|+++.+.. |+......++.++.+.|++++|.+.++.+.+.. -+.|+.++-
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 442 2223 6777777777765442 332222333336667777777777777654320 023566665
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 557 MLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
.+|......|+ +|.+++.++.+. .|+
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~--~P~ 285 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKL--DHE 285 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHT--TCC
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHh--CCC
Confidence 55555555665 777777777763 454
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=1.9e-06 Score=84.71 Aligned_cols=219 Identities=8% Similarity=-0.012 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 044251 252 DDAWKAYEAMEANNVRPDHVTCSIMITAMRKNG-RSAKEAWEFFEKMNRKGVKLSQEVVGALMKSF----CDE---GLKN 323 (686)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~ 323 (686)
++|+++++.+...+ +-+..+|+.--.++...+ ..+++++++++.++...++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555442 223344555555554444 1255555555555554332 333343333333 333 5566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLE--EAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ------PEIV 395 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~~~a 395 (686)
+++.+++.+.+...+ +..+|+.-..++.+.|.++ ++++.++.+.+..+. |...|+....++...+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 666666666665333 6666666666666666666 666677766665544 55566655555554444 4455
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC--CCCChhhHhhhHHHHHhcCCHHHHHHHHHHH
Q 044251 396 EKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG--IKPTSHSYTALIHAYSVGGWHEKAYAAFENM 473 (686)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 473 (686)
++.+..+....+ -|...++-+-..+.+.|+..+.+..++..+...+ -..+...+..++.+|.+.|+.++|+++++.+
T Consensus 206 l~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 555555444322 1344444433333333332232333333332221 0124455555555555556666666666665
Q ss_pred HH
Q 044251 474 LR 475 (686)
Q Consensus 474 ~~ 475 (686)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=1.4e-07 Score=103.18 Aligned_cols=150 Identities=11% Similarity=-0.091 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
++|...|++..+..+. +...|..+...|...|++++|+..|++..+. .+.+...+..+..+|...|++++|...+++.
T Consensus 6 ~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLAL-HPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp ---------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6688888877765433 5677888888888888888888888888775 2335677888888888888888888888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHCC
Q 044251 509 MSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG---GQTSKLPQLLKEMATLN 582 (686)
Q Consensus 509 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g 582 (686)
++.. +.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.++++.+.+
T Consensus 84 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 84 SDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8775 5567788888888888888888888888887765 34677788888888888 88888888888887653
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=6.5e-08 Score=87.67 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=119.0
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDG-F 527 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 527 (686)
.+..+...+.+.|++++|+..|++..+. -+.+...+..+..++...|++++|...++.+.+... +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 3455667788889999999998887664 234567788888888889999999999888876652 54444333222 1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A 606 (686)
...+...+|...+++..+.. +.+...+..+..++...|++++|...|+++.+..-.+ +...+..++.++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223345788888887765 3478888889999999999999999999988653222 356788888889999999999
Q ss_pred HHHHHHHHH
Q 044251 607 FFYHKQMVK 615 (686)
Q Consensus 607 ~~~~~~m~~ 615 (686)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887764
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=1.7e-07 Score=92.42 Aligned_cols=163 Identities=6% Similarity=-0.114 Sum_probs=109.9
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVT-FNILL 524 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li 524 (686)
+...+..+...+...|++++|+..|++.... -+-+...+..+...+...|++++|...++.+.... |+... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL-SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 3455666667777777888888877777764 23355677777777777778888877777776554 23322 22222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcC
Q 044251 525 DGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD---SVTYSTMIYAFVRVR 601 (686)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~li~~~~~~g 601 (686)
..+...++.++|...+++..... +.+...+..+...|...|++++|+..|.++.+. .|+ ...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHcC
Confidence 33555666677777777777665 446777777777777778888888777777764 332 556777777777777
Q ss_pred CHHHHHHHHHHHH
Q 044251 602 DFKRAFFYHKQMV 614 (686)
Q Consensus 602 ~~~~A~~~~~~m~ 614 (686)
+.++|...+++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777777777654
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=6.6e-08 Score=107.77 Aligned_cols=173 Identities=12% Similarity=-0.042 Sum_probs=142.0
Q ss_pred cCCCChHHHHHHHHHHHH--------HcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044251 422 GRPRKMSDMAADAFLRMK--------RVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFR 493 (686)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 493 (686)
...++. ++|++.+++.. +..+. +...+..+..+|.+.|++++|+..|+++.+. -+.+...|..+..++.
T Consensus 402 ~~~~~~-~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQP-VQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAER-VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCH-HHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
T ss_pred ccccCH-HHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CcchHHHHHHHHHHHH
Confidence 445565 78999998887 44332 5678888899999999999999999999885 2446788999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 494 RSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 494 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
..|++++|...|+++++.. +.+...+..+..+|.+.|++++ ...|+++.+.. +.+...|..+..+|.+.|++++|+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999887 5677888999999999999999 99999998876 4478899999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 044251 574 LLKEMATLNIKPD-SVTYSTMIYAFVRVRD 602 (686)
Q Consensus 574 l~~~m~~~g~~pd-~~~~~~li~~~~~~g~ 602 (686)
.|+++.+ +.|+ ...+..+..++...|+
T Consensus 556 ~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 9999885 4665 6677788888766555
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=1.9e-07 Score=92.07 Aligned_cols=165 Identities=11% Similarity=0.016 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+.+.+..+...+.+.|++++|+..|+.++...|.. +.++..++.++.+.|++++|+..|+++....+ ..........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN--GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHH
Confidence 33455566666666677777777777766666543 35666666666666666666666666655322 1222222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKL-SQEVVGALMKSFCDEGL 321 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 321 (686)
..+.+.++.++|...|++..... +.+...+..+...+...|+ +++|++.|+++++..... +...+..++..+...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGR-NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 33455555556666666655442 3344555555555666665 666666666666543221 13455555555555555
Q ss_pred HHHHHHHHHHH
Q 044251 322 KNEALIIQMEM 332 (686)
Q Consensus 322 ~~~A~~~~~~~ 332 (686)
.++|...+++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 55555555443
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=6.9e-08 Score=84.64 Aligned_cols=111 Identities=14% Similarity=-0.021 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMI 594 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li 594 (686)
+...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|+++... .| +...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 55678888888999999999999999998876 458999999999999999999999999999975 45 578899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 595 YAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631 (686)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 631 (686)
.+|...|++++|+..|+++++.. |+...-...-..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~--~~~~~~~~A~~l 146 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS--NDEKLKIKAQSY 146 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 99999999999999999999854 777644443333
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=1.5e-06 Score=81.20 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=96.9
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHH
Q 044251 219 LMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNG----RSAKEAWEFF 294 (686)
Q Consensus 219 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~~a~~~~ 294 (686)
|++.|++..+. .++.++..|...|...+++++|++.|++..+.| +...+..|-..|.. + + .++|+++|
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~-~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQAD-YPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCC-HHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCC-HHHHHHHH
Confidence 34444444432 345555555666666666666666666655543 34444444444444 3 3 56666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 044251 295 EKMNRKGVKLSQEVVGALMKSFCD----EGLKNEALIIQMEMEKKGIP-SNAIVYNTLINAYCK----SNQLEEAEGLFQ 365 (686)
Q Consensus 295 ~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 365 (686)
++..+.| +...+..|...|.. .+++++|...|+...+.|.. .....+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 44555555555554 56666666666666665421 015566666666666 566777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 044251 366 EMKTKGLKPTSATFNILMDAYSRR-M-----QPEIVEKLLLELQDMG 406 (686)
Q Consensus 366 ~m~~~g~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~m~~~~ 406 (686)
+..+.+ .+...+..|..+|... | +.++|..+|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666551 1333455555555432 2 6677777776666554
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=4.6e-06 Score=82.86 Aligned_cols=229 Identities=12% Similarity=0.059 Sum_probs=169.1
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 169 QLLELMANDG-LLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRAR-MGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 169 ~l~~~l~~~g-~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
..++.+...+ ..++|+++++.++...|... .+|+....++...| .+++++.+++.+.... +.+..+|+.-..++.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y--taWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHY--TVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444444444 55789999999999988665 78888888888888 5999999999998844 478999999888888
Q ss_pred Hc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 247 WC-G-RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAK--------EAWEFFEKMNRKGVKLSQEVVGALMKSF 316 (686)
Q Consensus 247 ~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (686)
+. + ++++++++++.+.+.. +-|..+|+...-.+...++ ++ ++++.++++++..+. |...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 87 7 8999999999998774 4577788776666655554 44 889999999987654 888888888888
Q ss_pred HhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHH
Q 044251 317 CDEGL-------KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQL--------------------EEAEGLFQEMKT 369 (686)
Q Consensus 317 ~~~g~-------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~ 369 (686)
.+.+. ++++++.+.++.... +-|...|+-+-..+.+.|+. ........++..
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 77776 688888888888774 44888888877777766653 233333333332
Q ss_pred CC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 370 KG-----LKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 370 ~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
.+ -.++...+..|+.+|...|+.++|.++++.+.+
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 21 124677778888888888888888888888754
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.65 E-value=8.9e-07 Score=96.73 Aligned_cols=155 Identities=8% Similarity=-0.145 Sum_probs=105.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 177 DGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWK 256 (686)
Q Consensus 177 ~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (686)
.|++++|++.|+.+....|. +...+..++..+.+.|++++|+..|++..+.. +.+..++..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 46788888888888877664 34778888888888888888888888877643 3577888888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 044251 257 AYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE---GLKNEALIIQMEME 333 (686)
Q Consensus 257 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~ 333 (686)
.|++..+.. +.+...+..+...+...|+ +++|.+.|+++++... .+...+..+...+... |++++|.+.+++..
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888887653 3456777778888888887 8888888888887643 3567777888888888 88888888888887
Q ss_pred HCCC
Q 044251 334 KKGI 337 (686)
Q Consensus 334 ~~g~ 337 (686)
+.+.
T Consensus 156 ~~~p 159 (568)
T 2vsy_A 156 AQGV 159 (568)
T ss_dssp HHTC
T ss_pred hcCC
Confidence 7753
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.64 E-value=2.5e-07 Score=81.21 Aligned_cols=136 Identities=7% Similarity=-0.050 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 428 SDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKL 507 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 507 (686)
.+.|+..++......+. +...+..+...|.+.|++++|+..|++.++.. +-+..+|..+..++...|+++.|+..|++
T Consensus 13 ~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 36777777766543221 34556778899999999999999999998852 34678999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044251 508 MMSEKVEGTRVTFNILLDGFAKQGQYLEARDV-VSEFGKIGLQPTLMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 508 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~li~~~~~~g~ 567 (686)
+++.. +.+..++..+...|.+.|++++|... ++++.+.. +-++.+|......+...|+
T Consensus 91 al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 91 SVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99887 66788999999999999998876655 58888776 4478888888888877774
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=6.9e-06 Score=81.12 Aligned_cols=169 Identities=9% Similarity=-0.030 Sum_probs=127.6
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCC--
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI-----ETYTALLDAFRRSGDTGMMMKIWKLMMSEKV---EGT-- 516 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~-- 516 (686)
...+...+..+...|++++|+..+.+..+....... ..+..+...+...|+++.|...+++.++... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556778889999999999999988875322111 2244455667788899999999999886421 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHCC----CCCC
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKI--GLQPT----LMTYNMLMNAYGRGGQTSKLPQLLKEMATLN----IKPD 586 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~pd 586 (686)
..+++.+...|...|++++|...++++.+. ..+.+ ..+|..++.+|...|++++|+.++++..+.. ....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 558899999999999999999999997622 11111 2688999999999999999999999987531 1111
Q ss_pred -HHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 044251 587 -SVTYSTMIYAFVRVRDFKRA-FFYHKQMVK 615 (686)
Q Consensus 587 -~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 615 (686)
..+|..+..+|...|++++| ..++++++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67889999999999999999 787887764
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=1.1e-06 Score=84.34 Aligned_cols=189 Identities=14% Similarity=-0.032 Sum_probs=127.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHH-------HHHHHccCChhHHHHHHHhccc------------CCCC----
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVL-------FPVLGRARMGDDLMVLFKNLPQ------------SKEF---- 232 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~------------~~~~---- 232 (686)
..+++.+|++.|..+....|... ..|.-+ ..++.+.++..+++..+..-.. .|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~--Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESAC--DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhh--HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 68999999999999999988765 777766 4566666556666555554433 1110
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--H
Q 044251 233 ----RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS--Q 306 (686)
Q Consensus 233 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~--~ 306 (686)
.-..++-.+...+...|++++|.++|+.+... .|+......+...+.+.++ +++|+..|+...... .+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r-~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAER-WTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTC-HHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCC-HHHHHHHHHHhhccC-CcccHH
Confidence 11345566788888999999999999888765 3554444445556677777 888888887554432 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 307 EVVGALMKSFCDEGLKNEALIIQMEMEKKGIPS--NAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
..+..+..++...|++++|+..|++.......| .......+..++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 356667777777777777777777776432213 2335566666777777777777777777765
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=1.7e-06 Score=80.70 Aligned_cols=126 Identities=9% Similarity=-0.072 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044251 487 ALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG 566 (686)
Q Consensus 487 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 566 (686)
.+...+...|++++|...+++++ .++..++..+...|...|++++|...+++..... +.+...|..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34444555566666666555542 3355566666666666666666666666655544 335556666666666666
Q ss_pred CccHHHHHHHHHHHCC--------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 567 QTSKLPQLLKEMATLN--------------IKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 567 ~~~~A~~l~~~m~~~g--------------~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
++++|++.|+++.+.. ..| ....+..+..++...|++++|...++++++..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 6666666666666531 111 12566677777777777777777777777643
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=1.9e-06 Score=85.24 Aligned_cols=208 Identities=10% Similarity=0.000 Sum_probs=142.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCh---hhHhhhHHHHHhcCCHHHHHHHHHHHH
Q 044251 398 LLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTS---HSYTALIHAYSVGGWHEKAYAAFENML 474 (686)
Q Consensus 398 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 474 (686)
.+..+..-...|+..+...+...+...- + .++. .....+. ..+...+..+...|++++|..++++..
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~---~---~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI---I---HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT---H---HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH---H---HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3444443344677777777776665431 1 1111 1111122 223334677889999999999999988
Q ss_pred HcCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 475 REEI-KPSI----ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE-GT----RVTFNILLDGFAKQGQYLEARDVVSEFG 544 (686)
Q Consensus 475 ~~~~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 544 (686)
.... .|+. ..+..+...+...++++.|...++++++.... .+ ..+++.+...|...|++++|...++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7422 2221 13334666667778999999999999874322 22 3478999999999999999999999987
Q ss_pred h----C-CCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 044251 545 K----I-GLQP-TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKPD-SVTYSTMIYAFVRVRD-FKRAFFYHKQ 612 (686)
Q Consensus 545 ~----~-~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~~~~~li~~~~~~g~-~~~A~~~~~~ 612 (686)
+ . +..+ ...+|..++.+|.+.|++++|+.++++..+. +..+. ..+|..++.++.+.|+ +++|.+.+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3 2 1112 2347889999999999999999999988742 22233 6788999999999994 6999999998
Q ss_pred HHH
Q 044251 613 MVK 615 (686)
Q Consensus 613 m~~ 615 (686)
++.
T Consensus 263 Al~ 265 (293)
T 3u3w_A 263 ASF 265 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=5e-07 Score=90.09 Aligned_cols=158 Identities=7% Similarity=-0.050 Sum_probs=77.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC--CHHHHHHHHH
Q 044251 456 AYSVGGWHEKAYAAFENMLREEI----KP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV---EG--TRVTFNILLD 525 (686)
Q Consensus 456 ~~~~~g~~~~A~~~~~~m~~~~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~ 525 (686)
.|...|++++|...|.+...... .. -..+|..+...|...|++++|+..+++.++... .+ ...+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555554433200 00 023445555555555555555555555543310 11 1234555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQP-----TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKPD-SVTYSTMIY 595 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~~~~~li~ 595 (686)
.|.. |++++|+..|++..+..... ...+++.+...|.+.|++++|+..|+++... +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5555 66666666666654321110 1345556666666666666666666665532 11111 124444555
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 044251 596 AFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~ 614 (686)
++...|++++|...+++.+
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 5555566666666666665
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=4.9e-07 Score=90.17 Aligned_cols=156 Identities=8% Similarity=-0.026 Sum_probs=105.1
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcC--C-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----CH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREE--I-KP--SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEG-----TR 517 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~ 517 (686)
.+|+.+..+|...|++++|+..|++.+..- . .+ ...++..+...|.. |+++.|+..|++.++..... ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 355666677777788888887777765431 0 11 12566677777777 88888888888877642111 14
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC------
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIG----LQPT-LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD------ 586 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd------ 586 (686)
.+++.+...|...|++++|+..|++..... ..+. ...+..++.++...|++++|...|++.. . .|+
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e 232 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHH
Confidence 578888899999999999999999877532 1111 2366777788888899999999999988 3 342
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH
Q 044251 587 SVTYSTMIYAFVRVRDFKRAFF 608 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~~~A~~ 608 (686)
......++.++ ..|+.+.+..
T Consensus 233 ~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 233 CAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHH-HhcCHHHHHH
Confidence 12344555554 5677665555
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=1.3e-06 Score=74.01 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYA 596 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~ 596 (686)
...+......|.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456677778888888888888888887765 4478888888888888888888888888888642 2257788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 044251 597 FVRVRDFKRAFFYHKQMVKSGQVPD-VKSYEKLRSI 631 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 631 (686)
+...|++++|++.|+++++.. |+ ...+..+.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD--PSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHHHh
Confidence 888888888888888888753 43 4444444443
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=2.1e-06 Score=80.16 Aligned_cols=132 Identities=11% Similarity=-0.056 Sum_probs=112.7
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...+++.++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 4556677888999999999999877 35688899999999999999999999999999876 667889999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQP---------------TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDS 587 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 587 (686)
..|++++|...|+++.+..... ....+..+..+|.+.|++++|...|+++.+. .|+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 9999999999999998754221 2378899999999999999999999999964 5553
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=2.3e-06 Score=75.98 Aligned_cols=129 Identities=9% Similarity=0.058 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|+++.|...+...++.. +.+..++..+...+...|++++|...+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555566666777777777777766654 4456677777777777777777777777777654 34677777777788
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHH
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSVTYSTM--IYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 614 (686)
...|++++|...++++.... +.+...+..+ +..+...|++++|+..+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888777642 2244444333 333667778888887777653
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.56 E-value=2.2e-05 Score=78.07 Aligned_cols=185 Identities=9% Similarity=-0.029 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG-RYDDAWKAYEAMEANNVRPDHVTCSIMITA 279 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 279 (686)
.++..+...+.+.+..++|+.+++.+....+ .+..+|+.--.++...| ++++++++++.+...+ +-+..+|+.-...
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444444445555666778888888777443 67778888777777777 4888888888887764 4456677777766
Q ss_pred HHHc-C-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 280 MRKN-G-RSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN--------EALIIQMEMEKKGIPSNAIVYNTLIN 349 (686)
Q Consensus 280 ~~~~-g-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~g~~~~~~~~~~li~ 349 (686)
+... + + +++++++++++++...+ +..+|+.....+.+.|.++ ++++.++++.+..+. |..+|+....
T Consensus 133 L~~l~~~~-~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~ 209 (349)
T 3q7a_A 133 LDRISPQD-PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWY 209 (349)
T ss_dssp HHHHCCSC-CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHhcCCC-hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 6665 5 4 67788888888776543 6666666555555555554 666666666665433 6666666666
Q ss_pred HHHHcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 350 AYCKSNQ-------LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ 391 (686)
Q Consensus 350 ~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (686)
.+.+.+. ++++++.++++....+. |...|+.+-..+.+.|.
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 6655554 56666666666554333 55566555554444443
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=4.8e-07 Score=79.17 Aligned_cols=110 Identities=10% Similarity=-0.082 Sum_probs=90.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 504 IWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
.++.+++.. +.+...+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|+..|+++...
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 344554443 3456677778888899999999999999988776 458889999999999999999999999999875
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 584 KP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 584 ~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
.| +...+..+..+|...|++++|+..|+++++..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44 57888889999999999999999999988753
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=7.1e-07 Score=82.53 Aligned_cols=158 Identities=8% Similarity=-0.090 Sum_probs=110.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHHcCC
Q 044251 458 SVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE----KV-EGTRVTFNILLDGFAKQGQ 532 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~ 532 (686)
...|++++|..+++.+... ......++..+...+...|+++.|...+++.++. +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567888888855544331 2234567777778888888888888888887763 11 2235577788888889999
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcC
Q 044251 533 YLEARDVVSEFGKI----GLQP--TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI-KPD----SVTYSTMIYAFVRVR 601 (686)
Q Consensus 533 ~~~A~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~~~~li~~~~~~g 601 (686)
+++|...+++.... +-.+ ....+..+...+...|++++|...+++.....- ..+ ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999998886643 2111 245678888899999999999999988774210 112 334678888999999
Q ss_pred CHHHHHHHHHHHHHC
Q 044251 602 DFKRAFFYHKQMVKS 616 (686)
Q Consensus 602 ~~~~A~~~~~~m~~~ 616 (686)
++++|...++++++.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.53 E-value=3.4e-06 Score=74.86 Aligned_cols=130 Identities=8% Similarity=-0.083 Sum_probs=108.1
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDG 526 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 526 (686)
...+..+...+...|++++|...|++.... .+.+..++..+..++...|+++.|...+++.++.. +.+..++..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345777888899999999999999999885 34467888889999999999999999999999876 5678889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCccHHHHHHHHHH
Q 044251 527 FAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA--YGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~ 579 (686)
+...|++++|...++++.+.. +.+...+..+..+ +...|++++|+..+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999998775 3366666444444 778899999999988765
No 130
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=3.7e-05 Score=76.01 Aligned_cols=176 Identities=6% Similarity=-0.054 Sum_probs=104.8
Q ss_pred HHHHHHhcCChh-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCC----------hhHHHHHHHhcccCCCCCCHHHH
Q 044251 170 LLELMANDGLLG-CCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARM----------GDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 170 l~~~l~~~g~~~-~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
.+....+.|.+. +|+.+++.++...|... .+|+.-..++...+. +++++.+++.+... .+.+..+|
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP~~y--taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-~PKny~aW 111 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDFA--TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTW 111 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhH--HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 344445566665 78888888888777654 555555555444333 45666777666653 23567777
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 239 NAAISGLFWCG--RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSF 316 (686)
Q Consensus 239 ~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (686)
+.-..++.+.| ++++++++++.+.+.. +-|..+|+.-.-++...|..++++++.+.++++..+. |...|+.....+
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 77666666666 3677777777776653 4456666666666666665346777777777766543 566666555554
Q ss_pred Hhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 317 CDE--------------GLKNEALIIQMEMEKKGIPSNAIVYNTLINAY 351 (686)
Q Consensus 317 ~~~--------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 351 (686)
.+. +.++++++.+....... |-|..+|+-+-..+
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 443 23455555555555542 23555555443333
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.51 E-value=3.7e-06 Score=71.08 Aligned_cols=94 Identities=10% Similarity=0.053 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 564 (686)
+......|.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..++.+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3344444455555555555555554443 3344555555555555555555555555555443 2245555555555555
Q ss_pred cCCccHHHHHHHHHHH
Q 044251 565 GGQTSKLPQLLKEMAT 580 (686)
Q Consensus 565 ~g~~~~A~~l~~~m~~ 580 (686)
.|++++|++.|++.++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=1.3e-06 Score=78.84 Aligned_cols=122 Identities=7% Similarity=0.097 Sum_probs=93.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCc--c
Q 044251 493 RRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA-YGRGGQT--S 569 (686)
Q Consensus 493 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 569 (686)
...|+++.|...++..++.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777777665 5567788888888888888888888888887765 3477788888888 7788888 9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
+|...++++.... +-+...+..+..++...|++++|...++++++..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999988752 2257788888889999999999999999988764
No 133
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.48 E-value=2.1e-06 Score=72.74 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC--CCCC----HHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN--IKPD----SVTY 590 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd----~~~~ 590 (686)
..++..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3456778888888999999999999988776 4478888899999999999999999998887531 1112 2467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 631 (686)
..+..++...|++++|++.|++.++. .||+.+...+.++
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~~l 125 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHHHHh
Confidence 78888999999999999999998874 4788776665443
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=5.9e-06 Score=69.00 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR 599 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 599 (686)
+..+...+...|++++|..+++++.+.. +.+..++..+...+.+.|++++|..+++++.... +.+..++..+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3333444444444444444444443332 2233444444444444444444444444444321 1133344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 044251 600 VRDFKRAFFYHKQMVK 615 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~ 615 (686)
.|++++|..+++++++
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4444444444444443
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=5.9e-06 Score=69.69 Aligned_cols=117 Identities=7% Similarity=-0.073 Sum_probs=57.0
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF 527 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 527 (686)
..+..+...+...|++++|+..|++.... .+.+...+..+...+...|+++.|...++..++.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34444555555555555555555555543 12234444555555555555555555555555443 33344444455555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 567 (686)
...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555555555555544433 2244444444444444443
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.47 E-value=7.3e-06 Score=68.43 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYG 563 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 563 (686)
.+..+...+...|+++.|...++++++.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+..+|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444555555555555444433 2344445555555555555555555555555443 234555555555555
Q ss_pred hcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 564 RGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFV 598 (686)
Q Consensus 564 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 598 (686)
..|++++|..+++++.+.. +.+...+..+..++.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 5555555555555555431 113444444444443
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=5e-06 Score=70.14 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|+++.|...+++++... +.+..++..+...+...|++++|...+++..... +.+...+..+..+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344444445555555555555555555443 3344445555555555555555555555554433 22344555555555
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 602 (686)
...|++++|...++++.... +.+...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555555555555554431 1134444444444444443
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.44 E-value=9.6e-06 Score=80.05 Aligned_cols=165 Identities=8% Similarity=0.055 Sum_probs=114.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHH---HHH-HHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----HH
Q 044251 238 YNAAISGLFWCGRYDDAWKAYEAMEANNV-RPDHV---TCS-IMITAMRKNGRSAKEAWEFFEKMNRKGVK-LS----QE 307 (686)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~---~~~-~ll~~~~~~g~~~~~a~~~~~~m~~~~~~-~~----~~ 307 (686)
+...+..+...|++++|.+++++..+... .|+.. .|. .+...+...++ +++|+..|++++..... .+ ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD-YEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC-HHHHHHHHHHHHHHhcccccHHHHHH
Confidence 33447778899999999999999877421 12211 122 34444445555 89999999999874322 12 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-H
Q 044251 308 VVGALMKSFCDEGLKNEALIIQMEMEKK-----GIPS-NAIVYNTLINAYCKSNQLEEAEGLFQEMKTK----GLKPT-S 376 (686)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 376 (686)
+++.+...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|+..+++..+. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6888888899999999999888888741 1111 2347788888899999999999888877642 22222 4
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 044251 377 ATFNILMDAYSRRM-QPEIVEKLLLELQ 403 (686)
Q Consensus 377 ~~~~~ll~~~~~~~-~~~~a~~~~~~m~ 403 (686)
.+|..+..++...| +.++|...+++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 57788888888888 4688888887765
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.44 E-value=3.7e-06 Score=73.51 Aligned_cols=102 Identities=10% Similarity=-0.027 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+.+.|++++|...|+.+++.. +.+...|..+..+|...|++++|...|+++.... +.++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 456666677777788888888888877766 5677777788888888888888888888877765 33677777888888
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHH
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSV 588 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~ 588 (686)
...|++++|...|+++.+. .||..
T Consensus 115 ~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 8888888888888888764 46553
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=4.9e-06 Score=79.89 Aligned_cols=140 Identities=10% Similarity=-0.069 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT--LMTYNMLMNA 561 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~ 561 (686)
....+...+...|++++|.++|..+...+ +.+. ....+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 34455667788899999999998887654 2233 56666668889999999999998654422 111 3467888999
Q ss_pred HHhcCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 562 YGRGGQTSKLPQLLKEMATLNIKPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKL 628 (686)
Q Consensus 562 ~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 628 (686)
+.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+..|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 9999999999999999985433253 4567778888999999999999999999865 664444333
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.40 E-value=6.7e-06 Score=82.95 Aligned_cols=131 Identities=9% Similarity=-0.045 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT--------------RVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
...+..+...+.+.|+++.|...|++.++...... ..+|..+..+|.+.|++++|+..++++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35566666677777777777777777776642221 5788889999999999999999999988876
Q ss_pred CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 044251 548 LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRA-FFYHKQMVK 615 (686)
Q Consensus 548 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 615 (686)
+.+...|..+..+|...|++++|+..|+++.+. .| +..++..+..++...|++++| ..+++.|..
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448889999999999999999999999999875 44 577888888899999999888 556776653
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.40 E-value=1.5e-06 Score=85.32 Aligned_cols=99 Identities=7% Similarity=-0.114 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+...+..+...+...|++++|+..|+.++...|. ++..+..++.+|.+.|++++|+..+++..... +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3456667788888888888888888888887664 45778888888888888888888888877643 36778888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
.+|...|++++|+..|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888877653
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=4.6e-06 Score=70.75 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYA 596 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~ 596 (686)
...+..+...+...|++++|...+++..+.. +.+..+|..+..+|...|++++|+..++++.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3444444445555555555555555544433 2244445555555555555555555555554421 1134445555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 044251 597 FVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~ 615 (686)
+...|++++|+..++++++
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555544
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.37 E-value=6.7e-06 Score=82.92 Aligned_cols=132 Identities=9% Similarity=-0.032 Sum_probs=113.0
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS--------------IETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
+...|..+...|.+.|++++|+..|++.+....... ..+|..+..+|.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888899999999999999999988532221 588999999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHH-HHHHHHHH
Q 044251 512 KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKL-PQLLKEMA 579 (686)
Q Consensus 512 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 579 (686)
. +.+..+|..+..+|...|++++|...|+++++.. +.+...+..+..++.+.|+.++| ..+++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 6688899999999999999999999999999876 44788999999999999999888 44666665
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.37 E-value=6e-06 Score=70.01 Aligned_cols=115 Identities=10% Similarity=-0.006 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|+++.|...++++++.. +.+..++..+...|...|++++|...++++.+.. +.+...+..+..+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 444444444455555555555555544433 2344455555555555555555555555555443 22455555555555
Q ss_pred HhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVR 601 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g 601 (686)
.+.|++++|.+.|++.... .| +...+..+..++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 5555555555555555542 22 2334444444444433
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.36 E-value=1.9e-06 Score=77.87 Aligned_cols=122 Identities=10% Similarity=0.127 Sum_probs=94.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCCH--
Q 044251 457 YSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDG-FAKQGQY-- 533 (686)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 533 (686)
+...|++++|+..+++.... .+.+...+..+...|...|+++.|...++++++.. +.+...+..+..+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 44567888888888887775 24466788888888888899999999988888775 4567778888888 7788888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
++|...++++.... +.+...+..+..+|...|++++|...|+++.+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999888765 446788888888999999999999999998874
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.36 E-value=2.3e-05 Score=77.29 Aligned_cols=61 Identities=13% Similarity=0.002 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 044251 308 VVGALMKSFCDEGLKNEALIIQMEMEKKG----IPS-NAIVYNTLINAYCKSNQLEEA-EGLFQEMK 368 (686)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 368 (686)
++..+...|.+.|++++|...+++..+.. ... -..+|..+..+|.+.|++++| ...|++..
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45555555555555555555555544321 110 145566666666666666666 55555543
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.32 E-value=3.4e-06 Score=73.05 Aligned_cols=99 Identities=10% Similarity=-0.071 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY 595 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 595 (686)
+...+..+...+.+.|++++|...|+++.... +.+...|..+..+|.+.|++++|+..|+++.... +-+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44566667778888999999999999988776 4478888889999999999999999999988753 235778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 044251 596 AFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+|...|++++|+..++++++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988865
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.3e-05 Score=67.46 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIY 595 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~ 595 (686)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+. .| +...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 3456667777778888888888888877765 447788888888888888888888888888764 34 4777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 044251 596 AFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~~ 616 (686)
++...|++++|+..++++++.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888888764
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=5.3e-06 Score=76.50 Aligned_cols=154 Identities=12% Similarity=-0.039 Sum_probs=69.8
Q ss_pred ccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCC
Q 044251 212 RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN----NVRP-DHVTCSIMITAMRKNGRS 286 (686)
Q Consensus 212 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~ 286 (686)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++.... +..+ ...++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN- 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC-
Confidence 45566666662222221 11134566666777777777777777766665431 1111 12344444555555555
Q ss_pred HHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcC
Q 044251 287 AKEAWEFFEKMNRK----GVK--LSQEVVGALMKSFCDEGLKNEALIIQMEMEKK----GIP-SNAIVYNTLINAYCKSN 355 (686)
Q Consensus 287 ~~~a~~~~~~m~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g 355 (686)
+++|.+.+++.++. +.. ....++..+...+...|++++|...+++.... +.+ .-..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 56666555555432 100 01223444444455555555555554444321 100 00122344444455555
Q ss_pred CHHHHHHHHHHH
Q 044251 356 QLEEAEGLFQEM 367 (686)
Q Consensus 356 ~~~~A~~~~~~m 367 (686)
++++|.+.+++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555544443
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=1.1e-06 Score=81.09 Aligned_cols=121 Identities=14% Similarity=0.066 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT---------------RVTFNILLDGFAKQGQYLEARDVVSEFGKIGL 548 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 548 (686)
.+..+...+...|+++.|...|++.++...... ..++..+..+|...|++++|...++++.+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344444555555555555555555554321111 2455555555556666666666666655543
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~ 607 (686)
+.+...|..+..+|...|++++|...|++..+. .| +..++..+..++...++.+++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555666666666666666666655543 23 3445555555555555444444
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=3e-06 Score=74.04 Aligned_cols=97 Identities=13% Similarity=-0.076 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 561 (686)
...+..+...+...|++++|...|+.++... +.+...|..+..+|...|++++|...|+++.... +.+...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3455666667777777777777777777665 5567777777777777788888888777777665 3366777777777
Q ss_pred HHhcCCccHHHHHHHHHHH
Q 044251 562 YGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 562 ~~~~g~~~~A~~l~~~m~~ 580 (686)
|...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7788888888887777765
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.26 E-value=1.7e-05 Score=77.60 Aligned_cols=98 Identities=13% Similarity=-0.042 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 305 SQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD 384 (686)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 384 (686)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666677777777777777777776653 236667777777777777777777777776665332 4556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 044251 385 AYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 385 ~~~~~~~~~~a~~~~~~m~~ 404 (686)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777766654
No 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=1.6e-05 Score=67.05 Aligned_cols=113 Identities=11% Similarity=0.125 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC--CCC----HHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI--KPD----SVTY 590 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd----~~~~ 590 (686)
...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...++++..... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456677777888888888888888877665 44677888888888888888888888888775421 122 6678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
..+..++...|++++|...++++++.. |+......+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 888888889999999999999888754 6776666665554
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.1e-05 Score=66.16 Aligned_cols=96 Identities=13% Similarity=-0.022 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|++++|...|++.++.. +.+..+|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555556666666666666666666654 4456667777777777777777777777766654 33566777777777
Q ss_pred HhcCCccHHHHHHHHHHH
Q 044251 563 GRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~ 580 (686)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777777665
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=4.8e-05 Score=62.53 Aligned_cols=94 Identities=11% Similarity=0.029 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 564 (686)
+..+...+...|+++.|...++..+... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3344444444444444444444444433 2344444445555555555555555555544433 2244455555555555
Q ss_pred cCCccHHHHHHHHHHH
Q 044251 565 GGQTSKLPQLLKEMAT 580 (686)
Q Consensus 565 ~g~~~~A~~l~~~m~~ 580 (686)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555553
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=4.1e-05 Score=62.95 Aligned_cols=111 Identities=17% Similarity=0.050 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYA 596 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~ 596 (686)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4456667777778888888888888877654 3467777888888888888888888888877642 2257777777888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 597 FVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRS 630 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 630 (686)
+...|++++|...++++++.+. .+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 8888888888888888776531 23444444443
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=2.1e-05 Score=66.42 Aligned_cols=103 Identities=11% Similarity=0.032 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL--QPT----LMTYNML 558 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l 558 (686)
+..+...+.+.|++++|+..|++.++.. +.+..+|+.+..+|...|++++|+..+++.++... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444455555555555555555555544 34455555555555566666666665555543221 111 2345556
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCCHHHH
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIKPDSVTY 590 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 590 (686)
..++...|++++|++.|++.+.. .||+.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 66666666666666666666542 4555443
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.21 E-value=0.0017 Score=64.09 Aligned_cols=173 Identities=10% Similarity=-0.048 Sum_probs=120.4
Q ss_pred ccCChh-HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 212 RARMGD-DLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR----------YDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 212 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
+.|.++ +|+.+++.+....+ .+..+|+.--.++...++ +++++.+++.+...+ +-+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 445554 68999988887544 677778776665555444 577888888887653 44667788777777
Q ss_pred HHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----
Q 044251 281 RKNGR-SAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL-KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS---- 354 (686)
Q Consensus 281 ~~~g~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---- 354 (686)
...++ .+++++++++++++.... |..+|+.-...+...|. ++++++.++.+.+..+. |..+|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 77764 378888888888887644 77777777777777777 57888888888877544 777887777666655
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 355 ----------NQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRR 389 (686)
Q Consensus 355 ----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 389 (686)
+.++++++.+.......+. |...|+.+-..+.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAG 240 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSS
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 3467777777777765444 666776554444443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.20 E-value=2.9e-05 Score=66.32 Aligned_cols=101 Identities=8% Similarity=-0.046 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTM 593 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 593 (686)
+.+...+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|+..+++..... +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3466777888888888888888888888887765 4467888888888888888888888888888743 2257788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 044251 594 IYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 594 i~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
..++...|++++|+..++++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888889999998888888764
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.19 E-value=3.8e-05 Score=68.15 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY 595 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 595 (686)
+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..++++++.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777777778888888888888877665 3377778888888888888888888888887642 224777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 044251 596 AFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+|...|++++|+..|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888765
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.19 E-value=2.3e-05 Score=72.15 Aligned_cols=132 Identities=11% Similarity=0.005 Sum_probs=100.7
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS---------------IETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
...+..+...+...|++++|+..|++......... ...+..+..+|...|++++|+..++.+++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566777888899999999999999887422111 267888889999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHH-HHHHHHHH
Q 044251 512 KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLP-QLLKEMAT 580 (686)
Q Consensus 512 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~ 580 (686)
. +.+..++..+..+|...|++++|...|++..+.. +-+...+..+..++...|+..++. ..+..|..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6 6678899999999999999999999999998775 447888888888888877777666 45555543
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.17 E-value=1.2e-05 Score=65.70 Aligned_cols=99 Identities=8% Similarity=-0.059 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP--DSVTYSTMI 594 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~~~~li 594 (686)
...+..+...+...|++++|...++++.+.. +.+...|..+..++...|++++|...++++.+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455566666777777777777777776654 3366677777777777777777777777777642 22 466677777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHCC
Q 044251 595 YAFVRV-RDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 595 ~~~~~~-g~~~~A~~~~~~m~~~g 617 (686)
.++... |++++|.+.++++++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777776653
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=1.9e-05 Score=66.51 Aligned_cols=108 Identities=9% Similarity=0.070 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL--QPT----LMTYNML 558 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l 558 (686)
+..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|...++++.+... .++ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444444555555555555555555443 33445555555555555555555555555543321 111 4555566
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY 595 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 595 (686)
..+|...|++++|.+.|+++.+. .|+......+..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 66666666666666666666553 344444444333
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.14 E-value=4.9e-05 Score=64.80 Aligned_cols=99 Identities=8% Similarity=-0.084 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 480 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
.+...+..+...+...|+++.|...|...++.. +.+..++..+..+|...|++++|...+++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345666666667777777777777777766655 4456677777777777777777777777776655 33667777777
Q ss_pred HHHHhcCCccHHHHHHHHHHH
Q 044251 560 NAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+|...|++++|+..|+++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777764
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.14 E-value=2.9e-05 Score=67.07 Aligned_cols=96 Identities=14% Similarity=-0.109 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|++++|...|+.++... +.+...|..+..+|...|++++|...|++..... +.+...|..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344455556666677777777776666655 4566666666667777777777777777766655 33566666677777
Q ss_pred HhcCCccHHHHHHHHHHH
Q 044251 563 GRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~ 580 (686)
...|++++|...|+++.+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776664
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=9.9e-05 Score=63.68 Aligned_cols=98 Identities=10% Similarity=-0.052 Sum_probs=54.2
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFN 521 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 521 (686)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++..++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555666666666666666666666653 344 3445555555555555555555555555443 33444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 522 ILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 522 ~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
.+..+|...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555543
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=2.1e-05 Score=65.73 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFV 598 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~ 598 (686)
+..+...+.+.|++++|...++++.+.. +.+...|..+..++...|++++|+..|+++.+. .| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445556677788888888888777665 346777777778888888888888888877764 44 4667777777788
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 044251 599 RVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 599 ~~g~~~~A~~~~~~m~~~ 616 (686)
..|++++|+..++++++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877753
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=1.2e-05 Score=67.31 Aligned_cols=95 Identities=13% Similarity=-0.047 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
+......+.+.|++++|+..|+.++...|.. +..|..++.++...|++++|+..|++.....+ .+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 4456778889999999999999999987754 58888899999999999999999998877443 67888899999999
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 044251 247 WCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~ 264 (686)
..|++++|+..|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988765
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.09 E-value=4.1e-05 Score=67.90 Aligned_cols=98 Identities=7% Similarity=-0.033 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 561 (686)
...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3456666666677777777777777777665 4466677777777777777777777777777665 3367777777777
Q ss_pred HHhcCCccHHHHHHHHHHHC
Q 044251 562 YGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 562 ~~~~g~~~~A~~l~~~m~~~ 581 (686)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77778888887777777753
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.0001 Score=77.11 Aligned_cols=217 Identities=11% Similarity=-0.022 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
...-++.+...|++++|++.|..++...+...+... ..+......... ..++..++..|.
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~-----------~~al~~l~~~y~ 66 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA---------GASVDDKRRNEQ-----------ETSILELGQLYV 66 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS---------SSSBCSHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHH---------HHHHHHHHhhhH-----------HHHHHHHHHHHH
Confidence 344577888999999999999999988664432100 001111111111 123455666666
Q ss_pred HcCCHHHHHHHHHHHHhC-CCCCCHH---HHHHHHHHHH-HcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHH
Q 044251 247 WCGRYDDAWKAYEAMEAN-NVRPDHV---TCSIMITAMR-KNGRSAKEAWEFFEKMNRK----GVKL-SQEVVGALMKSF 316 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~-g~~p~~~---~~~~ll~~~~-~~g~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~ 316 (686)
..|++++|.+.+..+... +..++.. .....+..+. ..|. .+.+..++...... +..+ -..++..+...+
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDS-LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSC-HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 667776666666665432 1111211 1222222222 2333 67777776665532 2222 245667777778
Q ss_pred HhcCCHHHHHHHHHHHHHC--CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC-CC-C--HHHHHHHHHH
Q 044251 317 CDEGLKNEALIIQMEMEKK--GI---PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK--GL-KP-T--SATFNILMDA 385 (686)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~--g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p-~--~~~~~~ll~~ 385 (686)
...|++++|..++..+... +. +....++..++..|...|++++|..++++.... .. .| . ...+..++..
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 8888888888777776542 11 112456777788888888888888888776542 11 11 1 2355666677
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 044251 386 YSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~ 404 (686)
+...++++.|...|.+..+
T Consensus 226 ~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 7778888888877776643
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.06 E-value=7.5e-05 Score=60.68 Aligned_cols=97 Identities=10% Similarity=0.032 Sum_probs=48.7
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEG--TRVTFNILL 524 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li 524 (686)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.++.. +. +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455556666666666666666666665532 2234444444445555555555555555544432 22 344444444
Q ss_pred HHHHHc-CCHHHHHHHHHHHHh
Q 044251 525 DGFAKQ-GQYLEARDVVSEFGK 545 (686)
Q Consensus 525 ~~~~~~-g~~~~A~~~~~~~~~ 545 (686)
.++... |++++|.+.++++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 444444 444444444444443
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=3.2e-05 Score=67.88 Aligned_cols=98 Identities=10% Similarity=0.098 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCC-CHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-PT----LMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKP-DSV 588 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~ 588 (686)
++..+...|...|++++|...+++..+.... .+ ..++..+..++...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 5555666666677777777777665432100 11 445667777777888888888887776642 1111 145
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
++..+...+...|++++|.+.+++.++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777888888889999999988887653
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00037 Score=72.70 Aligned_cols=195 Identities=11% Similarity=0.007 Sum_probs=123.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPT----------------SATFNILMDAYSRRMQPEIVEKLLLELQDMG-LEPNA- 411 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~- 411 (686)
.+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+++..+...- -.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34455666666666665554321110 1134556777777777777777776664321 11111
Q ss_pred --HHHHHHHHHhcCCCChHHHHHHHHHHHHHc----CCCC-ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc--CC--CC
Q 044251 412 --KSYTCLISAYGRPRKMSDMAADAFLRMKRV----GIKP-TSHSYTALIHAYSVGGWHEKAYAAFENMLRE--EI--KP 480 (686)
Q Consensus 412 --~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~p 480 (686)
......+..+....+..+.+..++...... +..+ -..++..+...|...|++++|..+++++... +. .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 122333444443333347777777766542 2111 2456788899999999999999999988653 11 11
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 481 -SIETYTALLDAFRRSGDTGMMMKIWKLMMSE--KVEGT----RVTFNILLDGFAKQGQYLEARDVVSEFG 544 (686)
Q Consensus 481 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 544 (686)
...++..++..|...|+++.|..++++.+.. ....+ ...+..+...+...|++++|...|.+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2367888899999999999999999988754 11211 3456777777888999999999887764
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=0.00012 Score=63.06 Aligned_cols=99 Identities=10% Similarity=-0.036 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHH
Q 044251 515 GTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT----LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTY 590 (686)
Q Consensus 515 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 590 (686)
.+...+..+...+...|++++|...|++..+.. |+ ...|..+..+|...|++++|+..+++..... +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 345555566666666666666666666665542 33 4556666666666666666666666666531 2245566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
..+..++...|++++|..+++++++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666667777777777666654
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.99 E-value=0.00011 Score=61.68 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 044251 522 ILLDGFAKQGQYLEARDVVSEFGKIGLQPTL---MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD----SVTYSTMI 594 (686)
Q Consensus 522 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~li 594 (686)
.+...+...|++++|...|+++.+... .+. ..+..+..+|.+.|++++|...++++... .|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 345566777888888888888776542 233 46777778888888888888888888764 333 56677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 595 YAFVRVRDFKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
.++...|++++|...++++++.. |+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 111 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY--PGSDA 111 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCChH
Confidence 88888888888888888887753 55443
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.98 E-value=6e-05 Score=66.64 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKI--------G---------LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
.+......+.+.|++++|+..|.+.+.. . -+.+...|..+..+|.+.|++++|+..+++++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4455555666666666666666665543 0 0224578888999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 582 NIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 582 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
. +.+...|..+..+|...|++++|+..++++++.. |+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~ 131 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAA 131 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCH
Confidence 3 2358889999999999999999999999998754 6543
No 178
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.97 E-value=5e-05 Score=65.60 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=71.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQT----------SKLPQLLKEMATLNIKP-DSVTYSTMIYAF 597 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~----------~~A~~l~~~m~~~g~~p-d~~~~~~li~~~ 597 (686)
+.+.+++|...+++..+.. +.+...|..+..++...|++ ++|+..|+++++. .| +..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 4455667777777766665 33677777777777666654 4788888887764 55 467788888888
Q ss_pred HHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 598 VRV-----------RDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 598 ~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
... |++++|++.|+++++. .|+...|...+++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 766 4899999999999984 58888887766665
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=1.6e-05 Score=84.26 Aligned_cols=126 Identities=8% Similarity=-0.084 Sum_probs=100.3
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF 527 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 527 (686)
..+..+...+.+.|++++|+..|++..+. .+.+...+..+..+|.+.|++++|+..+++.++.. +.+..++..+..+|
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 84 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556666788899999999999999885 23457889999999999999999999999999886 56788899999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCccHHHHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA--YGRGGQTSKLPQLLK 576 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 576 (686)
...|++++|.+.++++.+.. +.+...+..+..+ +.+.|++++|+++++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999988765 3355566666666 888899999999988
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.92 E-value=9.8e-05 Score=77.82 Aligned_cols=96 Identities=9% Similarity=0.002 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIY 595 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~ 595 (686)
..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++.+. .| +..++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4677778888888888888888888888776 447888888888888888888888888888864 45 4567777888
Q ss_pred HHHHcCCHHHHH-HHHHHHHH
Q 044251 596 AFVRVRDFKRAF-FYHKQMVK 615 (686)
Q Consensus 596 ~~~~~g~~~~A~-~~~~~m~~ 615 (686)
++.+.|++++|. ..++.|..
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888887765 44555543
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.90 E-value=7.2e-05 Score=65.49 Aligned_cols=134 Identities=16% Similarity=0.043 Sum_probs=99.0
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----C
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEI-KPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE-G----T 516 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~----~ 516 (686)
..++..+...|...|++++|+..+++...... ..+ ..++..+...+...|++++|...+++.++.... . .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34567777888888999999998888765311 111 146777888888999999999999887754211 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQ-PTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
..++..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456777888889999999999999887643 211 1245678888999999999999999998775
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.89 E-value=0.00029 Score=59.12 Aligned_cols=90 Identities=10% Similarity=-0.006 Sum_probs=47.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKVEGTR---VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT---LMTYNMLMNAY 562 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~ 562 (686)
...+...|++++|...++.+++.. +.+. .++..+..++...|++++|...++++.+.. +.+ ...+..+..+|
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 334445555555555555555443 1122 344455555556666666666666655443 112 44555566666
Q ss_pred HhcCCccHHHHHHHHHHH
Q 044251 563 GRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~ 580 (686)
...|++++|...|+++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666654
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.87 E-value=0.00014 Score=74.11 Aligned_cols=89 Identities=11% Similarity=0.005 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMI 594 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li 594 (686)
+..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++.+. .| +...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34566666666777777777777777766654 335666666777777777777777777776653 33 455556666
Q ss_pred HHHHHcCCHHHHH
Q 044251 595 YAFVRVRDFKRAF 607 (686)
Q Consensus 595 ~~~~~~g~~~~A~ 607 (686)
.++...++.+++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555554
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.87 E-value=0.00015 Score=76.35 Aligned_cols=131 Identities=5% Similarity=-0.004 Sum_probs=102.4
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS--------------IETYTALLDAFRRSGDTGMMMKIWKLMMSEK 512 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 512 (686)
...|..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|+++.|+..++++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44566777788888888888888888877422111 5788888999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH-HHHHHH
Q 044251 513 VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ-LLKEMA 579 (686)
Q Consensus 513 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-l~~~m~ 579 (686)
+.+..+|..+..+|...|++++|...|+++++.. +-+...+..+..++.+.|+.+++.+ +++.|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678899999999999999999999999998875 3467788889999988888877764 445554
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.86 E-value=0.00021 Score=61.84 Aligned_cols=98 Identities=12% Similarity=-0.034 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHhcCCccHHHHHHHHHHHC-----C
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQP------TL-----MTYNMLMNAYGRGGQTSKLPQLLKEMATL-----N 582 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g 582 (686)
.+......+.+.|++++|+..|++.+...... +. ..|..+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445556666777777777777766543220 22 38888889999999999999999888863 1
Q ss_pred CCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 583 IKPD-SVTY----STMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 583 ~~pd-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+.|+ ...| .....++...|++++|+..|+++++.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2675 6677 89999999999999999999999853
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.85 E-value=0.00017 Score=63.60 Aligned_cols=68 Identities=15% Similarity=0.037 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
+..+|..+..+|.+.|++++|+..+++++... +.+...|..+..+|...|++++|...|++.... .|+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~ 129 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence 44567777777788888888888888877765 446777888888888888888888888887764 454
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.85 E-value=3.6e-05 Score=81.59 Aligned_cols=119 Identities=11% Similarity=0.091 Sum_probs=98.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQT 568 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 568 (686)
...+.+.|++++|.+.+++.++.. +.+..+|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 345667899999999999999886 6678999999999999999999999999999886 44789999999999999999
Q ss_pred cHHHHHHHHHHHCCCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 044251 569 SKLPQLLKEMATLNIKP-DSVTYSTMIYA--FVRVRDFKRAFFYHK 611 (686)
Q Consensus 569 ~~A~~l~~~m~~~g~~p-d~~~~~~li~~--~~~~g~~~~A~~~~~ 611 (686)
++|++.++++.+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999875 34 34556666555 888899999999988
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.82 E-value=3.7e-05 Score=63.73 Aligned_cols=83 Identities=11% Similarity=0.038 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044251 531 GQYLEARDVVSEFGKIG--LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~ 607 (686)
|++++|+..|++.++.+ -+.+...|..+..+|...|++++|+..|+++.+. .| +..++..+..++...|++++|+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 44444455555444432 0112344444555555555555555555555443 22 3444455555555555555555
Q ss_pred HHHHHHHH
Q 044251 608 FYHKQMVK 615 (686)
Q Consensus 608 ~~~~~m~~ 615 (686)
..++++++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.80 E-value=0.00018 Score=73.33 Aligned_cols=123 Identities=8% Similarity=-0.010 Sum_probs=96.7
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLRE---------------EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV 513 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 513 (686)
.+..+...+.+.|++++|+..|++.++. ..+.+..+|..+..+|.+.|++++|+..++++++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3556667777888888888888877651 012244678888889999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
+.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999988775 3477888888888887777666654
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.78 E-value=0.00056 Score=73.80 Aligned_cols=143 Identities=6% Similarity=-0.041 Sum_probs=88.8
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCC----------hhHHHHHHHhcccCCCCCCHHHHH
Q 044251 171 LELMANDGLL-GCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARM----------GDDLMVLFKNLPQSKEFRDAHVYN 239 (686)
Q Consensus 171 ~~~l~~~g~~-~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~ 239 (686)
+..+.+.|.+ ++|++.++.++...|... .+|+....++.+.|+ +++++..++.+.... +.+..+|+
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~nP~~~--taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~ 111 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGANPDFA--TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhH--HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4444445544 467888888888777554 666666666666655 667777777766633 35667777
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 240 AAISGLFWCG--RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFC 317 (686)
Q Consensus 240 ~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 317 (686)
.-..++.+.| +++++++.++++.+.. +-+..+|+....++...|..++++++.+.++++..+. +...|+.....+.
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~ 189 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHH
Confidence 6666666666 5577777777776653 3455666666666666662266666666666665433 5555555544444
Q ss_pred h
Q 044251 318 D 318 (686)
Q Consensus 318 ~ 318 (686)
+
T Consensus 190 ~ 190 (567)
T 1dce_A 190 Q 190 (567)
T ss_dssp H
T ss_pred h
Confidence 3
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.77 E-value=6.5e-05 Score=62.24 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 496 GDTGMMMKIWKLMMSEK--VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 496 g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
|++++|+..|++.++.+ -+.+..++..+..+|...|++++|...++++.+.. +-+..++..+..+|...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444555555554432 12233444555555555555555555555555443 2244555555555555555555555
Q ss_pred HHHHHHH
Q 044251 574 LLKEMAT 580 (686)
Q Consensus 574 l~~~m~~ 580 (686)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.73 E-value=6.4e-05 Score=75.72 Aligned_cols=95 Identities=12% Similarity=-0.035 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHH-
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYA- 596 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~- 596 (686)
+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+ +.|+ ...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 56666677777777777777777776654 33667777777777777777777777777764 3443 4444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 044251 597 FVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~~ 616 (686)
....+..+.+..+|++|+..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 23445666777777777653
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.00081 Score=57.45 Aligned_cols=111 Identities=15% Similarity=0.040 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCccHH
Q 044251 496 GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR----GGQTSKL 571 (686)
Q Consensus 496 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 571 (686)
+++++|...|++..+.+ .+... |...|...+.+++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566777777776666 33333 5555656666777777777777654 66777777777776 6777788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 044251 572 PQLLKEMATLNIKPDSVTYSTMIYAFVR----VRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 572 ~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 617 (686)
.++|++..+.| +...+..|...|.. .+++++|+.+++++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888877654 56677777777777 778888888888887766
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.72 E-value=0.0008 Score=72.59 Aligned_cols=173 Identities=8% Similarity=-0.021 Sum_probs=104.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044251 425 RKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGW----------HEKAYAAFENMLREEIKPSIETYTALLDAFRR 494 (686)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 494 (686)
+...++|++.++.+....++ +..+|+.--.++...|+ +++++..++.+.+.. +-+..+|..-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 44456677777777766544 44555555555555555 677777777776642 2355666666666666
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc------
Q 044251 495 SG--DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQG-QYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG------ 565 (686)
Q Consensus 495 ~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~------ 565 (686)
.+ +++++++.++++++.. +-+..+|+.-...+.+.| .++++++.++++++.. +-|...|+....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 66 5577777777777665 446666666666666666 6667777777666655 23666666666665543
Q ss_pred --------CCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCH
Q 044251 566 --------GQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDF 603 (686)
Q Consensus 566 --------g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~ 603 (686)
+.+++++++++++... .| |...|..+...+.+.++.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCc
Confidence 3345666666666643 33 455666666665555553
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=9.7e-05 Score=74.40 Aligned_cols=155 Identities=12% Similarity=0.028 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 561 (686)
...+..+...+.+.|+++.|...|++.++.. |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445555666666677777777777766543 22111 112233333332221 1378889999
Q ss_pred HHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhhhhc
Q 044251 562 YGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK-SYEKLRSILDVKVATK 639 (686)
Q Consensus 562 ~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~l~a~~~~~ 639 (686)
|.+.|++++|+..+++.++. .| +...|..+..+|...|++++|+..|+++++. .|+.. .+..+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~------- 308 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA------- 308 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH-------
Confidence 99999999999999999975 45 6889999999999999999999999998754 35432 222221111
Q ss_pred chhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 640 NRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
....+..++++..|.+|....|+++..
T Consensus 309 ----------------~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 309 ----------------EQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp -------------------------------------------
T ss_pred ----------------HHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 012335678888999999999987654
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.66 E-value=0.00016 Score=76.15 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044251 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEAN-----N-VRPDH-VTCSIMITAMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~m~~ 299 (686)
...+++.|..+|...|++++|..++++..+. | -.|++ .+++.|...|...|+ +++|..++++.++
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~-~~eA~~~~~~Al~ 421 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH-IEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 4566777777777777777777777665431 2 12332 456777777777777 7777777776654
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.66 E-value=0.0006 Score=58.98 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKI-------GLQPTLMTY----NMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.|+.+..++.+.|++++|+..+++.++. . +-+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777665 4 2356677 8888888888888888888888874
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00025 Score=74.60 Aligned_cols=53 Identities=6% Similarity=-0.004 Sum_probs=26.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 457 YSVGGWHEKAYAAFENMLREE---IKP----SIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~~~---~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
+...|++++|+.++++.++.. +.+ ...+++.+..+|...|++++|+.++++.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 445666666666666654420 111 12344555555555555555555554443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=7e-05 Score=61.02 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
..+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..++++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344445555555555555555555555443 22455555555555555555555555555553
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.49 E-value=0.0036 Score=53.30 Aligned_cols=110 Identities=10% Similarity=-0.024 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 044251 250 RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD----EGLKNEA 325 (686)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A 325 (686)
++++|++.|++..+.| .++.. +..+...+...++|+++|++..+.| +...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~-----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC-----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH-----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh-----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4555555555555544 22222 2222222223555555555555543 44444555555544 4555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 044251 326 LIIQMEMEKKGIPSNAIVYNTLINAYCK----SNQLEEAEGLFQEMKTKG 371 (686)
Q Consensus 326 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 371 (686)
...|+...+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555543 34444555555554 455555555555554443
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00021 Score=58.08 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT------LMTY 555 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~ 555 (686)
...+..+...+...|++++|...+++.++.. +.+..++..+..+|...|++++|...+++..+.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 3455566666667777777777777776654 4456677777777777777777777777776654 223 4556
Q ss_pred HHHHHHHHhcCCccHHHHHHH
Q 044251 556 NMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 556 ~~li~~~~~~g~~~~A~~l~~ 576 (686)
..+..++...|+.++|+..++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 666666666666666555443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=0.0003 Score=60.72 Aligned_cols=97 Identities=13% Similarity=-0.033 Sum_probs=63.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 494 RSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQ----------YLEARDVVSEFGKIGLQPTLMTYNMLMNAYG 563 (686)
Q Consensus 494 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 563 (686)
+.+.+++|.+.++..++.. +.+...|+.+..++...++ +++|+..|++.++.. +.+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3344555555555555544 4455555555555554443 468888888888776 337778888888888
Q ss_pred hcC-----------CccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 564 RGG-----------QTSKLPQLLKEMATLNIKPDSVTYSTMI 594 (686)
Q Consensus 564 ~~g-----------~~~~A~~l~~~m~~~g~~pd~~~~~~li 594 (686)
..| ++++|++.|+++++ +.|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 764 78999999999987 477755554433
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.43 E-value=0.00089 Score=54.88 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 536 ARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 536 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
|...|+++.+.. +.+...|..+..+|...|++++|+..|+++.... +.+...|..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 2355566666666666666666666666665432 12355566666666666666666666666654
Q ss_pred C
Q 044251 616 S 616 (686)
Q Consensus 616 ~ 616 (686)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.40 E-value=0.0014 Score=53.67 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 500 MMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 500 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
.+...++..++.. +.+...+..+...|...|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5778888888776 6678899999999999999999999999998876 4478899999999999999999999999988
Q ss_pred HC
Q 044251 580 TL 581 (686)
Q Consensus 580 ~~ 581 (686)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.33 E-value=0.002 Score=49.77 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444444444444444444332 22344444444444444444444444444443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.33 E-value=0.0026 Score=49.11 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|++++|...+++.++.. +.+..++..+..+|...|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445555566666666666666666666554 3455666666667777777777777777766554 33556666666555
Q ss_pred Hhc
Q 044251 563 GRG 565 (686)
Q Consensus 563 ~~~ 565 (686)
.+.
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.0016 Score=51.81 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 044251 551 TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG-QVPDVKSYEKL 628 (686)
Q Consensus 551 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l 628 (686)
+...|..+..+|...|++++|+..|+++.+. .| +...|..+..+|...|++++|+..++++++.. -.++......+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 5667777777777777777777777777764 33 46677777777777888888887777776531 12344444444
Q ss_pred HHHH
Q 044251 629 RSIL 632 (686)
Q Consensus 629 ~~~l 632 (686)
..++
T Consensus 84 ~~~l 87 (100)
T 3ma5_A 84 QDAK 87 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.0086 Score=59.35 Aligned_cols=80 Identities=10% Similarity=-0.020 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKL 628 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 628 (686)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++++.. .|...+|.-+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 5588899999888888899999999999999864 88888888889999999999999999999985 4888887666
Q ss_pred HHHH
Q 044251 629 RSIL 632 (686)
Q Consensus 629 ~~~l 632 (686)
-++.
T Consensus 350 ~~l~ 353 (372)
T 3ly7_A 350 ENGI 353 (372)
T ss_dssp HHSS
T ss_pred hCce
Confidence 5543
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.98 E-value=0.0032 Score=50.08 Aligned_cols=66 Identities=17% Similarity=0.059 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
+.+..++..+...|...|++++|+..|+++.+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455666677777777777777777777776655 33566677777777777777777777776654
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.66 E-value=0.017 Score=49.20 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 044251 532 QYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG---QTSKLPQLLKEMATLNIKP--DSVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A 606 (686)
.+..+.+-|.+....+ .++..+...+.+++++.+ +.++++.+|++..+.. .| +...+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3456677777776666 478999999999999988 6669999999998864 35 356677777899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhhh
Q 044251 607 FFYHKQMVKSGQVPDVKSYEKLRSILDVKV 636 (686)
Q Consensus 607 ~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~ 636 (686)
+++++.+++ +.|+..-...+.+..+...
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHHHHHHH
Confidence 999999998 5588776666666664433
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.60 E-value=0.05 Score=53.90 Aligned_cols=141 Identities=11% Similarity=0.096 Sum_probs=93.0
Q ss_pred ChhhHhhhHHHHH--hcC---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHH---cC--CHHH---HHHHHHHHHh-
Q 044251 446 TSHSYTALIHAYS--VGG---WHEKAYAAFENMLREEIKPSI-ETYTALLDAFRR---SG--DTGM---MMKIWKLMMS- 510 (686)
Q Consensus 446 ~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~---~g--~~~~---a~~~~~~~~~- 510 (686)
+...|...+.+.. ..+ ...+|..+|++.++. .|+. ..|..+..+|.. .+ .... ....+.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 5556665554432 222 346788888888773 4543 444433333321 11 1111 1112222111
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHH
Q 044251 511 EKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTY 590 (686)
Q Consensus 511 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 590 (686)
...+.+..+|.++...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 1236688888888888888899999999999999875 7888888999999999999999999999986 47877765
Q ss_pred HH
Q 044251 591 ST 592 (686)
Q Consensus 591 ~~ 592 (686)
.-
T Consensus 347 ~~ 348 (372)
T 3ly7_A 347 YW 348 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.55 E-value=0.0047 Score=63.89 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=52.1
Q ss_pred HccCChhHHHHHHHhcccC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHH
Q 044251 211 GRARMGDDLMVLFKNLPQS-------KEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN-----N-VRPDH-VTCSIM 276 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~~~~~l 276 (686)
.+.|++++|+.++++.... ..+....+++.|+.+|...|++++|+.++++.... | -.|++ .+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3455666666655544321 11123456777777777777777777777665421 2 12332 456667
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 044251 277 ITAMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 277 l~~~~~~g~~~~~a~~~~~~m~~ 299 (686)
...|...|+ +++|+.+++++++
T Consensus 378 a~~~~~~g~-~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGM-FPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHhcCC-HHHHHHHHHHHHH
Confidence 777777777 7777777777664
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.55 E-value=0.0095 Score=61.52 Aligned_cols=86 Identities=5% Similarity=-0.109 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC-----C-CCCC-HHHHHHHHH
Q 044251 530 QGQYLEARDVVSEFGKI---GLQP----TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL-----N-IKPD-SVTYSTMIY 595 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd-~~~~~~li~ 595 (686)
.|++++|+.++++.++. -+.| ...+++.|..+|...|++++|+.+++++++. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46778888887776532 1122 2467888888888888888888888887642 2 1233 456888999
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 044251 596 AFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~ 615 (686)
+|...|++++|..+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.54 E-value=0.02 Score=59.10 Aligned_cols=109 Identities=11% Similarity=0.003 Sum_probs=74.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC-----C-CCCC-HHH
Q 044251 524 LDGFAKQGQYLEARDVVSEFGKIG---LQP----TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL-----N-IKPD-SVT 589 (686)
Q Consensus 524 i~~~~~~g~~~~A~~~~~~~~~~~---~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd-~~~ 589 (686)
+..+...|++++|+.++++.++.. +.| ...+++.|+.+|...|++++|+.++++++.. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888876431 122 2467888888888899999999888887642 2 1232 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKS---GQVPDVKSYEKLRSIL 632 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~l 632 (686)
++.|...|...|++++|..+++++++- -+-||......+.+.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 888889999999999999998887642 1225554444443333
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.50 E-value=0.0049 Score=63.63 Aligned_cols=86 Identities=7% Similarity=-0.027 Sum_probs=51.7
Q ss_pred cCChhHHHHHHHhccc-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHH
Q 044251 213 ARMGDDLMVLFKNLPQ-------SKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN-----N-VRPDH-VTCSIMIT 278 (686)
Q Consensus 213 ~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~~~~~ll~ 278 (686)
.|++++|+.++++... ...+....+++.|..+|...|++++|+.++++..+. | -.|++ .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3555555555543322 112123566777777777777777777777766431 2 12333 45677777
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 044251 279 AMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 279 ~~~~~g~~~~~a~~~~~~m~~ 299 (686)
.|...|+ +++|..+|+++++
T Consensus 391 ~~~~qg~-~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLEN-KAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHhccC-HHHHHHHHHHHHH
Confidence 7777777 7777777777765
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.20 E-value=0.0092 Score=46.94 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLM-TYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+...|++++|...++++.+.. +.+.. .|..+..+|...|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555544433 22344 444455555555555555555555443
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.11 E-value=0.021 Score=45.61 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHH
Q 044251 161 RVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNA 240 (686)
Q Consensus 161 ~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 240 (686)
.++..+|..+...+.+.|++..|...|+.++...+.... .......++..
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~------------------------------~~~~~~~i~~~ 51 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------------------------STIDKVSVLDY 51 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------------------------CSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC------------------------------CcccHHHHHHH
Confidence 368889999999999999999999999888765211100 01134455566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 241 AISGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
+..++.+.|++++|+..+++..+.
T Consensus 52 L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 52 LSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc
Confidence 666666666666666666666543
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.00 E-value=0.11 Score=40.38 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 549 QPTLMTYNMLMNAYGRGGQ---TSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
+.|+..+..+..++...++ .++|..++++.++. .| +......+...+.+.|++++|+.+|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567777777777764444 68888888888864 45 57777888888888888888888888888764
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.83 E-value=0.085 Score=41.11 Aligned_cols=55 Identities=9% Similarity=0.190 Sum_probs=27.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 491 AFRRSGDTGMMMKIWKLMMSEKVEGTRV-TFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 491 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
.+...|++++|...++++++.. +.+.. .+..+..+|...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555443 33344 4555555555555555555555555544
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.74 E-value=0.21 Score=56.36 Aligned_cols=156 Identities=12% Similarity=0.102 Sum_probs=96.2
Q ss_pred HHHHHhcCChhHHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 044251 171 LELMANDGLLGCCLY-FYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG 249 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (686)
.......+++++|.+ ++..+. +......++..+.+.|.+++|+++.+.-. .-.......|
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~ 666 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVG 666 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHT
T ss_pred HhHHHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcC
Confidence 444456788888866 441111 02334667777788888888887653211 1133456788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 250 RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
++++|+++.+.+ .+...|..+...+.+.++ ++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 667 ~~~~A~~~~~~~------~~~~~W~~la~~al~~~~-~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 667 QLTLARDLLTDE------SAEMKWRALGDASLQRFN-FKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCC-HHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 888888875442 456788888888888888 8888888887643 334445555566666655555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 330 MEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (686)
+.....|. ++....+|.+.|++++|++++.++
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55554431 233344455666666666666544
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.62 E-value=0.37 Score=54.33 Aligned_cols=107 Identities=7% Similarity=-0.049 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
......++..+...|.+++|+++.+... .-.......|++++|.++.+.+ .+...|..+..
T Consensus 629 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~ 689 (814)
T 3mkq_A 629 KDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGD 689 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHH
Confidence 5555777888888999888887663211 1233456789999999997765 56789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~ 299 (686)
.+.+.|+++.|.+.|..+.. |..+...+...++ .+...++.+....
T Consensus 690 ~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~-~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 690 ASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNN-KEGLVTLAKDAET 735 (814)
T ss_dssp HHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCC-HHHHHHHHHHHHH
Confidence 99999999999999998864 3444555555555 5544444444333
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.53 E-value=0.058 Score=41.91 Aligned_cols=67 Identities=4% Similarity=-0.161 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 514 EGTRVTFNILLDGFAKQGQ---YLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
+.+...+..+..++...++ .++|..++++.++.. +-++..+..+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455666666666654443 577777777777665 336677777777777777777777777777754
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.32 E-value=0.13 Score=42.08 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=73.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcC
Q 044251 527 FAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSK---LPQLLKEMATLNIKP--DSVTYSTMIYAFVRVR 601 (686)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p--d~~~~~~li~~~~~~g 601 (686)
......+..+.+-|.+....| .++..+--.+.+++.+..+... ++.++++....+ .| .......|.-++.+.|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhh
Confidence 333445566667777666656 4788888889999999887666 888999888753 24 2344556667899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 602 DFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 602 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
++++|+++++.+++ +.|+..-...|....
T Consensus 89 ~Y~~A~~~~~~lL~--~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 89 EYEKALKYVRGLLQ--TEPQNNQAKELERLI 117 (126)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999999998 458765555555544
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.22 E-value=1.4 Score=38.39 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=60.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
+......|+++.|+++.+.+ .+...|..++....+.|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 45555667777777766554 2346677777777777777777777776655 5556666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFE 295 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~ 295 (686)
.++-.++-+.....| -++.....+...|+ ++++.++|.
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGd-v~~~i~lL~ 113 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNS-TKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCC-HHHHHHHHH
Confidence 666555554444443 13444444445555 666665554
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.01 E-value=1.5 Score=41.69 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 044251 252 DDAWKAYEAMEANNVRPD---HVTCSIMITAMRKN-----GRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE-GLK 322 (686)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 322 (686)
..|..++++..+. .|+ -..|..+...|... |+ .++|.++|++.++.+..-+..++......++.. |+.
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd-~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGG-MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCC-HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCC-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4455555555554 454 34566666666553 44 666666666666654332355555556666653 666
Q ss_pred HHHHHHHHHHHHCCCC
Q 044251 323 NEALIIQMEMEKKGIP 338 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~ 338 (686)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 6666666666665443
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.01 E-value=0.079 Score=50.29 Aligned_cols=88 Identities=14% Similarity=-0.011 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcc-----CChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc-CCHHH
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRA-----RMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC-GRYDD 253 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~ 253 (686)
...|...++++++.+|...+..+|..++..|.+. |+.++|.+.|++..+..+..+..++......+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3566777777777777655556777777777763 67777777777666544323466666666666663 66777
Q ss_pred HHHHHHHHHhCCCC
Q 044251 254 AWKAYEAMEANNVR 267 (686)
Q Consensus 254 A~~~~~~m~~~g~~ 267 (686)
|.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 77777776665433
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.98 E-value=0.18 Score=40.04 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 551 TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN------IKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 551 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
+..-.-.|+..+.+.|++..|...|+++.+.- -.+...++..|..++.+.|+++.|+.+++++++. .|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCH
Confidence 33444556666677777777777776665421 1224567777777888888888888888877763 35543
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.77 Score=40.03 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=21.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 458 SVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
.+.|+++.|.++.+++ .+...|..|.......|+++-|++.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555554444332 23444555555545555555554444443
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.56 E-value=0.23 Score=42.20 Aligned_cols=81 Identities=14% Similarity=-0.001 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSN---QLEEAEGLFQEMKTKGLKP--TSATFNILMDAYSRRMQPEIVEK 397 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~ 397 (686)
..+.+.|.+..+.|. ++..+...+..++++.+ ++++++.+|+++.+.. .| ....+..|.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555555444 46666666666777666 5556777777766653 12 23344446666677777777777
Q ss_pred HHHHHHHc
Q 044251 398 LLLELQDM 405 (686)
Q Consensus 398 ~~~~m~~~ 405 (686)
+++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777664
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.17 E-value=2 Score=35.26 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=96.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 457 YSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEA 536 (686)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 536 (686)
+.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-.. .| ...+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence 34567778888888777663 34555666665555555656666665555332 11 1345666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 537 RDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 537 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
...+-.+ ..+....+..+..+...|+-+.-.+++..+.. +-+|++.....+..||.+.|+..+|-+++.++-+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 6555543 22556677788888899999999898888644 35778889999999999999999999999999888
Q ss_pred CC
Q 044251 617 GQ 618 (686)
Q Consensus 617 g~ 618 (686)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 85
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.04 E-value=2.1 Score=35.10 Aligned_cols=66 Identities=23% Similarity=0.137 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCC
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIK 584 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 584 (686)
...+..++.+...|+.+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34444555566666666666666664332 2556666666666666666666666666666666643
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.25 E-value=2.6 Score=35.37 Aligned_cols=112 Identities=7% Similarity=0.126 Sum_probs=57.4
Q ss_pred ChhhHhhhHHHHHhcCCH------HHHHHHHHHHHHcCCCCCH----HHHHHHHH---HHHHcCCHHHHHHHHHHHHhcC
Q 044251 446 TSHSYTALIHAYSVGGWH------EKAYAAFENMLREEIKPSI----ETYTALLD---AFRRSGDTGMMMKIWKLMMSEK 512 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~----~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~ 512 (686)
|..+|-..+...-+.|+. ++..++|++.... ++|+. ..|-.+.- .+...++.+.|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 334444444444444555 5666666666654 44432 11111110 1123356666777777666553
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 513 VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMN 560 (686)
Q Consensus 513 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 560 (686)
-. -..+|-.....-.+.|++..|.+++.+.+..+.+ +...+...+.
T Consensus 91 Kk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 91 KK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp TT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 22 2566666666666677777777777776666533 3333443333
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.17 E-value=0.75 Score=38.58 Aligned_cols=66 Identities=11% Similarity=0.031 Sum_probs=39.5
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 566 GQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILD 633 (686)
Q Consensus 566 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 633 (686)
++.++|.++|+.++..+ +-=..+|.....-=.+.|+.+.|.+++.+++..+.. +..+.+..++-+.
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl~ 139 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNLN 139 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhhh
Confidence 56666777776665431 111455555555556777777777777777765532 4456666666553
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.11 E-value=0.86 Score=49.98 Aligned_cols=129 Identities=12% Similarity=0.042 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CH
Q 044251 237 VYNAAISGLFWCGR-YDDAWKAYEAMEANNVRPDHVTC--SIMITAMRKNGRSAKEAWEFFEKMNRK------GVKL-SQ 306 (686)
Q Consensus 237 ~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~~a~~~~~~m~~~------~~~~-~~ 306 (686)
....++..+...|+ ++.|..+|+++... .|....+ ..++..+...+..--+|.+++.+.++. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34455555555666 58899999999876 4543332 223333322222134566666655431 1111 11
Q ss_pred ----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 307 ----------EVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMK 368 (686)
Q Consensus 307 ----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (686)
.....=.+.|...|+++.|+.+-++.+.. .|.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222345677889999999999999887 45578999999999999999999999988773
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.05 E-value=14 Score=37.06 Aligned_cols=246 Identities=13% Similarity=0.040 Sum_probs=134.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhH----
Q 044251 379 FNILMDAYSRRMQPEIVEKLLLELQDM-GLEP---NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSY---- 450 (686)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---- 450 (686)
...|...|.+.|+.++..+++...... +..+ .......++..+....+..+.-.++.....+..-. +..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344566666666666666665554321 0011 22334555666655444434444444444332110 11222
Q ss_pred --hhhHHHHHhcCCHHHHHHHHHHHHHcC--CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHH
Q 044251 451 --TALIHAYSVGGWHEKAYAAFENMLREE--IKPS---IETYTALLDAFRRSGDTGMMMKIWKLMMSE--KVEGTRVTFN 521 (686)
Q Consensus 451 --~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~ 521 (686)
..++..|...|++.+|..++.++.+.- .... ...+...++.|...+++..+...+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 367889999999999999999987741 1112 245667778899999999999999887654 2223333322
Q ss_pred ----HHHHHHH-HcCCHHHHHHHHHHHHh-CCC--CC---CHHHHHHHHHHHHhcCCccHHHHHHH-HHHHCCCCCCHHH
Q 044251 522 ----ILLDGFA-KQGQYLEARDVVSEFGK-IGL--QP---TLMTYNMLMNAYGRGGQTSKLPQLLK-EMATLNIKPDSVT 589 (686)
Q Consensus 522 ----~li~~~~-~~g~~~~A~~~~~~~~~-~~~--~p---~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~pd~~~ 589 (686)
.-...+. ..+++..|...|-+..+ ..- .| +...|..|... -.++..+.-.++. +....-..|+...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhccccccccCCccHHH
Confidence 2233455 68999999988776542 110 11 12233222222 2233334433332 2111112455556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLR 629 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 629 (686)
+..++.+| ..+++.+...+++.... .+..|+....++-
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~ 296 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLG 296 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHH
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHH
Confidence 66777665 56888877777766432 3556775444333
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.80 E-value=1.9 Score=35.08 Aligned_cols=91 Identities=18% Similarity=0.080 Sum_probs=62.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhH---HHHHHHhcccCCCC-CCHHHHHHHHHHHHHcCCH
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDD---LMVLFKNLPQSKEF-RDAHVYNAAISGLFWCGRY 251 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 251 (686)
....+..+.+.|......++ ++..+-..++-++.+.++... .+.+++.+...+.+ ......-.|..++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 33344555556666655433 566777777888888777665 88888887774422 2445566677889999999
Q ss_pred HHHHHHHHHHHhCCCCCCH
Q 044251 252 DDAWKAYEAMEANNVRPDH 270 (686)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~ 270 (686)
++|++.++.+.+. .|+.
T Consensus 91 ~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 91 EKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHh--CCCC
Confidence 9999999998876 5653
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.78 E-value=12 Score=36.00 Aligned_cols=129 Identities=9% Similarity=0.002 Sum_probs=74.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 044251 170 LLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG 249 (686)
Q Consensus 170 l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (686)
-+..-+..|++=+|.+.++-+..+ |.+++++++|+.++... ...+.+.|
T Consensus 19 rl~~~I~~G~yYEAhQ~~Rtl~~R----------------y~~~~~~~eAidlL~~g---------------a~~ll~~~ 67 (312)
T 2wpv_A 19 RFENKIKAGDYYEAHQTLRTIANR----------------YVRSKSYEHAIELISQG---------------ALSFLKAK 67 (312)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH---------------HHHHHHTT
T ss_pred HHHHHhhccChHHHHHHHHHHHHH----------------HHHhcCHHHHHHHHHHH---------------HHHHHHCC
Confidence 366667778877777766655433 45778888888776543 23455667
Q ss_pred CHHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhc
Q 044251 250 RYDDAWK----AYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMN----RKG--VKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 250 ~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~ 319 (686)
+...|-+ +.+-+.+.+++++......++..+.........-.+++++++ +.| ...++..+..+...|.+.
T Consensus 68 Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e 147 (312)
T 2wpv_A 68 QGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEG 147 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhc
Confidence 7665554 345556667777777777777666543221111122333332 222 223566666677777777
Q ss_pred CCHHHHHHHH
Q 044251 320 GLKNEALIIQ 329 (686)
Q Consensus 320 g~~~~A~~~~ 329 (686)
|++.+|..-|
T Consensus 148 ~~~~~A~~H~ 157 (312)
T 2wpv_A 148 DFVYEAERYF 157 (312)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7776666544
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.67 E-value=25 Score=39.44 Aligned_cols=90 Identities=10% Similarity=0.007 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH---------HhcCC--C--CCCHHHHHHHHHHHHccCCh--------hHHHHHHHh
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWM---------RLQEP--S--LVSPRACSVLFPVLGRARMG--------DDLMVLFKN 225 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~---------~~~~~--~--~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~ 225 (686)
...++..+.+.|.+.+|+.+.-.+ ..... . ....+.+..++.+....-.. ..+..+|.+
T Consensus 148 v~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k 227 (963)
T 4ady_A 148 FERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMN 227 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHh
Confidence 445566666777777776544332 22100 0 01123444444443322222 235555555
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 226 LPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 226 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
+.. |+ |..++.++.+.++.+.+.++|..+..
T Consensus 228 ~~~----~d---y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 228 MPN----CD---YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp SSS----CC---HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCc----hh---HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 532 22 66677777788888888888888764
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.42 E-value=26 Score=39.27 Aligned_cols=265 Identities=7% Similarity=-0.064 Sum_probs=136.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-----CCHHHHHHHHHH
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPTSA--TFNILMDAYSRRMQPEIVEKLLLELQDMGL--E-----PNAKSYTCLISA 420 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~-----p~~~~~~~ll~~ 420 (686)
+....|+.++++.++......+-..+.. .-..+.-+....|..+++..++.......- . +....-.++--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3455677777777766544321011222 222233334445554567776666554311 0 111112222222
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCChh----hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HH
Q 044251 421 YGRPRKMSDMAADAFLRMKRVGIKPTSH----SYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAF--RR 494 (686)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~ 494 (686)
+.-.|...+++.+.+..+.... +.. .--+|...++..|+.+....++..+.+. .+......+..++ ..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhh
Confidence 2222222255666666665532 211 1123333455677777777777776653 2333333344443 46
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHH
Q 044251 495 SGDTGMMMKIWKLMMSEKVEGTRVTFN--ILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLP 572 (686)
Q Consensus 495 ~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 572 (686)
.|+.+.+..+.+.+.... .|....-. ++.-+|+..|+.....+++..+.+.. ..++.-...+.-++.-.|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 788888888888877643 23322222 23345667788777777888877532 223333344444555577777778
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHH
Q 044251 573 QLLKEMATLNIKPDSVTYSTMIYAFVRVRDF-KRAFFYHKQMVKSGQVPDVKSYE 626 (686)
Q Consensus 573 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~ 626 (686)
+++..+.+.+ .|...--..+.-+....|+. .+|+.++..+.. .+|..+-.
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq 665 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQ 665 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHH
Confidence 8877666543 34333333333344444444 578888888864 35555443
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.33 E-value=5.2 Score=40.32 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=73.3
Q ss_pred HHhcCChhHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHccCChh-HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 174 MANDGLLGCCLYFYEWMRLQE--PSLVSPRACSVLFPVLGRARMGD-DLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 174 l~~~g~~~~Al~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
....|+.++|...++.++..- +...+.. ...+- .....+++. -..+...++..+...|+
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~-------~~~a~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVED-------KVLAHTAKAEAEIACGR 186 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHH-------HHHHHHHHHHHHHHTTC
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCC
Confidence 345688889999999888762 2221100 01111 111222221 12245567778888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR-----KGVKLSQEVV 309 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-----~~~~~~~~~~ 309 (686)
+++|+..+..+.... +-+...|..++.++...|+ ..+|++.|+++.+ .|+.|...+-
T Consensus 187 ~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr-~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 187 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 888888888876653 4577788888888888888 8888888887654 3677665543
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.32 E-value=7 Score=32.47 Aligned_cols=83 Identities=8% Similarity=0.062 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQT---SKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSY 625 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 625 (686)
.|+..+--.+.+++.+..+. .+++.++++....+-.-.......|.-++.+.|++++|+++.+.+++ +.|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 67888888888999987764 46888999888743211244455666799999999999999999998 45887666
Q ss_pred HHHHHHHH
Q 044251 626 EKLRSILD 633 (686)
Q Consensus 626 ~~l~~~l~ 633 (686)
..|....+
T Consensus 114 ~~Lk~~Ie 121 (144)
T 1y8m_A 114 GALKSMVE 121 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655553
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.03 E-value=1.5 Score=44.28 Aligned_cols=76 Identities=14% Similarity=0.043 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 044251 556 NMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK-----SGQVPDVKSYEKLRS 630 (686)
Q Consensus 556 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~~ 630 (686)
..++.++...|++++|+..+..+.... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|.+.+-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344555566666666666666665431 22556666666666666666666666665432 266666665555544
Q ss_pred HH
Q 044251 631 IL 632 (686)
Q Consensus 631 ~l 632 (686)
++
T Consensus 254 il 255 (388)
T 2ff4_A 254 IL 255 (388)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.61 E-value=4 Score=33.43 Aligned_cols=85 Identities=9% Similarity=0.077 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 547 GLQPTLMTYNMLMNAYGRGGQT---SKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 547 ~~~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
+-.|+..+--.+.+++.+..+. .+++.++++....+-.-....+-.|.-++.+.|++++|+++.+.+++ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 3367888888888899887754 46888898888754111255566777799999999999999999987 568877
Q ss_pred HHHHHHHHHH
Q 044251 624 SYEKLRSILD 633 (686)
Q Consensus 624 ~~~~l~~~l~ 633 (686)
-...|....+
T Consensus 113 QA~~Lk~~Ie 122 (134)
T 3o48_A 113 QVGALKSMVE 122 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.52 E-value=17 Score=37.31 Aligned_cols=268 Identities=11% Similarity=0.092 Sum_probs=150.0
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 320 GLKNEALIIQMEMEKK-----GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
|+++.|.+.+-.+.+. ...........++..|.+.|+++...+.+..+....-. .......+++.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~-------- 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKV-------- 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHH--------
Confidence 6677777766655542 23335666777788888888888777776655543211 111222222221
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHH
Q 044251 395 VEKLLLELQDMGLEPNAKSYTCLISAYGR--PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFEN 472 (686)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (686)
..++... ..++..+...++..... .|+.. -+.. .......|...|...|++.+|..++..
T Consensus 101 -~~~l~~~----~~~d~~~~~~~i~~l~~vte~kif-------lE~e------rarl~~~La~i~e~~g~~~eA~~iL~~ 162 (445)
T 4b4t_P 101 -MEYLKSS----KSLDLNTRISVIETIRVVTENKIF-------VEVE------RARVTKDLVEIKKEEGKIDEAADILCE 162 (445)
T ss_dssp -HHHHHHH----CTTHHHHHHHHHHCCSSSSSCCCC-------CCHH------HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -HHHHhcC----CchhHHHHHHHHHHHHHHhccchH-------HHHH------HHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1222221 12233334334433221 11110 0000 112334577889999999999999999
Q ss_pred HHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 473 MLRE--EIKPS---IETYTALLDAFRRSGDTGMMMKIWKLMMSE----KVEGT--RVTFNILLDGFAKQGQYLEARDVVS 541 (686)
Q Consensus 473 m~~~--~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 541 (686)
+... +.... ...+...++.|...+++..|..++.++... ..+|+ ...+...+..+...+++.+|...|.
T Consensus 163 l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~ 242 (445)
T 4b4t_P 163 LQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQ 242 (445)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8653 22222 256777788999999999999999987532 22222 3456777888888999999999888
Q ss_pred HHHhC-CCCCCHHHHH----HHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 044251 542 EFGKI-GLQPTLMTYN----MLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRV--RDFKRAFFYHKQMV 614 (686)
Q Consensus 542 ~~~~~-~~~p~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~--g~~~~A~~~~~~m~ 614 (686)
++... ...-|...+. .++.+..-.+....--.++........-++...|..++.+|... .+++.+.+.|+..+
T Consensus 243 e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 243 EIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 86531 1112333222 22222223333333334444333222234677888899888654 45677766665544
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.73 E-value=18 Score=35.06 Aligned_cols=184 Identities=10% Similarity=0.033 Sum_probs=109.0
Q ss_pred HHHHHhcCCh---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 171 LELMANDGLL---GCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 171 ~~~l~~~g~~---~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
+..-+..|+| =+|.+.++-+.. =|.+++++++|+.++-.. ...+.+
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~RTi~~----------------Ry~~~k~y~eAidLL~~G---------------A~~ll~ 67 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQETRLVAA----------------RYSKQGNWAAAVDILASV---------------SQTLLR 67 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHhCCCCccccHHHHHHHHHHH----------------HHHhhcCHHHHHHHHHHH---------------HHHHHH
Confidence 5666778888 677666655543 356788999988876542 334556
Q ss_pred cCCHHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----CC--CCCCHHHHHHHHHHHH
Q 044251 248 CGRYDDAWKAY----EAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR----KG--VKLSQEVVGALMKSFC 317 (686)
Q Consensus 248 ~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~----~~--~~~~~~~~~~li~~~~ 317 (686)
.|+...|-++- +-+.+.++++|......++..+.........=..+++++++ .| ...++.....+...|.
T Consensus 68 ~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~ 147 (336)
T 3lpz_A 68 SGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYV 147 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 67766554443 55556677788877777777776554311122333333332 22 4457888899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 318 DEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEK 397 (686)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 397 (686)
+.+++.+|..-|- .|-.+.+..+..++.-+...+...+ ++...-..++ -|...++...|..
T Consensus 148 ~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~ 208 (336)
T 3lpz_A 148 EEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANT 208 (336)
T ss_dssp HTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHH
T ss_pred ccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHH
Confidence 9999999887762 2333344566555544444333111 1222222233 2345677888877
Q ss_pred HHHHHHH
Q 044251 398 LLLELQD 404 (686)
Q Consensus 398 ~~~~m~~ 404 (686)
++....+
T Consensus 209 ~~~~f~~ 215 (336)
T 3lpz_A 209 AYRIFTS 215 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.45 E-value=2.8 Score=45.96 Aligned_cols=129 Identities=10% Similarity=-0.034 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc------CCCC-Ch---
Q 044251 379 FNILMDAYSRRMQ-PEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV------GIKP-TS--- 447 (686)
Q Consensus 379 ~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~--- 447 (686)
...++..+...++ .+.|..+++++......-+......++..+...+...-+|..++.+..+. ...+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555655 57788899888776433233333444555444433323456655554421 1111 11
Q ss_pred -------hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 448 -------HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 448 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
.....-...|...|+++-|+.+-++.... .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222234456678888888888877764 3345678888888888888888888777765
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.82 E-value=29 Score=40.58 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=109.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 202 ACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMR 281 (686)
Q Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 281 (686)
....++..+.+.+.++.+..+..-.. .+....-.+..+|...|++++|.+.|.+.-. |+..+....
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~-------- 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF-------- 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC--------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh--------
Confidence 34456666778888888887665544 3555556788899999999999999987532 222211000
Q ss_pred HcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcC
Q 044251 282 KNGRSAKEAWEFFEKMNRKG--VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA----IVYNTLINAYCKSN 355 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g 355 (686)
.. ... +..+.... ...-..-|..++..+.+.+.++.+.++-....+...+.+. ..|..+...+...|
T Consensus 880 --~~-~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~ 952 (1139)
T 4fhn_B 880 --AV-LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 952 (1139)
T ss_dssp --SS-HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred --hh-hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC
Confidence 00 111 11111111 1223456777888888889888888887776654322222 26788889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 356 QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 356 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
++++|...+-.+..... -......|+..+|..|..+.
T Consensus 953 ~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 953 KFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 99999999988877644 34567777777777776544
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.97 E-value=12 Score=37.46 Aligned_cols=67 Identities=10% Similarity=-0.073 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHH
Q 044251 557 MLMNAYGRGGQTSKLPQLLKEMATLNIKPD-----SVTYSTMIYAFVRVRDFKRAFFYHKQMVKS--GQVPDVK 623 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~ 623 (686)
-|+..|...|++.+|.+++.++.+.=-+.| ..+|..-+..|...|++.++..++..+... .+.+++.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 477788888888888888887775211111 345666677888889999999888877644 2335554
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.91 E-value=22 Score=41.67 Aligned_cols=149 Identities=7% Similarity=-0.013 Sum_probs=100.6
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C---------------
Q 044251 452 ALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE----K--------------- 512 (686)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--------------- 512 (686)
.++..+...+..+.+.++..- .+.+......+..+|...|++++|..+|.+.-.. .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 455566667777666554332 3345555566777888899999999999765311 0
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC
Q 044251 513 ---VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTL----MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP 585 (686)
Q Consensus 513 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 585 (686)
...-..-|..++..+.+.+.++.+.++-+..++.....+. ..|..+.+++...|++++|...+-.+-....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 0111234677888888889999998888776654322222 25788889999999999999999888765443
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 044251 586 DSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 586 d~~~~~~li~~~~~~g~~~~A~ 607 (686)
...+..|+..++..|..+.-.
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhh
Confidence 456777888888777755443
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.28 E-value=4.2 Score=31.33 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
++.+-++.+....+.|++.+..+.+.+|.+.+++..|.++++-...+ ..+...+|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 55666677777788899999999999999999999999999877654 224456677776665
No 251
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=81.94 E-value=0.0012 Score=66.71 Aligned_cols=224 Identities=13% Similarity=0.093 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
.++.|..+..+..+.+++.+|++-|= -..++..|..++.+..+.|.+++.++.+.-..+. ..++.+=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI-------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI-------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC-------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH-------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHH
Confidence 55666666777777777666654321 1123355667777777777777777666544432 23444555677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK 322 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 322 (686)
-+|++.++..+-.++ .. .|++.-...+..-|...|. ++.|.-+|..+.. |..|...+.+.|++
T Consensus 124 ~ayAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~l-YeAAKilys~isN---------~akLAstLV~L~~y 186 (624)
T 3lvg_A 124 FALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKM-YDAAKLLYNNVSN---------FGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCC-STTSSTTGGGSCC---------CTTTSSSSSSCSGG
T ss_pred HHHHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccC-HHHHHHHHHhCcc---------HHHHHHHHHHHHHH
Confidence 777777765543222 11 3555555556666666665 5555555543321 11122222233333
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
..|.+.- .+ ..++.||-.+-.+|...+.+.-|.-.--.+.-.. | -...++..|-..|.+++.+.+++.-
T Consensus 187 q~AVdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3332211 11 1244556666666666555554433322222110 1 0112344445555555555555554
Q ss_pred HHcCCCCCHHHHHHHHHHhcCC
Q 044251 403 QDMGLEPNAKSYTCLISAYGRP 424 (686)
Q Consensus 403 ~~~~~~p~~~~~~~ll~~~~~~ 424 (686)
.... ......|+-|.-.|++-
T Consensus 256 lglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSS
T ss_pred hCCC-chhHHHHHHHHHHHHhc
Confidence 4211 23444555555555543
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.73 E-value=60 Score=34.75 Aligned_cols=94 Identities=12% Similarity=0.155 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..-..-+..+++.+++...+..+.. .+.+...-.....+....|+..+|......+-..| ......+..++..+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~ 146 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW 146 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHH
Confidence 3444555667777777777665443 13577777777788888888877877777775554 33344677777777
Q ss_pred HHcCC-CHHHHHHHHHHHHHC
Q 044251 281 RKNGR-SAKEAWEFFEKMNRK 300 (686)
Q Consensus 281 ~~~g~-~~~~a~~~~~~m~~~ 300 (686)
.+.|. ..+..++-++.+...
T Consensus 147 ~~~g~lt~~~~~~R~~~al~~ 167 (618)
T 1qsa_A 147 RASGKQDPLAYLERIRLAMKA 167 (618)
T ss_dssp HHTTCSCHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHC
Confidence 76554 123344444444443
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.71 E-value=12 Score=30.59 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHccCCh---hHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 044251 198 VSPRACSVLFPVLGRARMG---DDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHV 271 (686)
Q Consensus 198 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 271 (686)
+++.+--..+-++.+..+. .+++.+++.+...+.......+-.|..++.+.|++++|++..+.+.+. .|+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 4445555555555555544 346777776665443234566667778888888888888888888876 56543
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.02 E-value=26 Score=29.02 Aligned_cols=71 Identities=10% Similarity=0.013 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHccCChh---HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 044251 198 VSPRACSVLFPVLGRARMGD---DLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDH 270 (686)
Q Consensus 198 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 270 (686)
+++.+--..+.++.+..+.+ +.+.+++.+............-.|..++.+.|++++|++..+.+.+. .|+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 45555555566666665543 56777777665443334556666778888889999998888888876 6654
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.47 E-value=17 Score=31.06 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCCCH----HHHHHHHHHHHccCChhHHHHHHHhc
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQ---EPSLVSP----RACSVLFPVLGRARMGDDLMVLFKNL 226 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~---~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (686)
..+..-+..+...|.|+.|.-+...+... ++...++ .++..++.++...|++.+|...|++.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34455688899999999999988886654 4444333 35566677788899999998888763
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.81 E-value=8.9 Score=32.82 Aligned_cols=29 Identities=14% Similarity=-0.019 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQ 193 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~ 193 (686)
+.+..++..+...|+|.+|...|+.+++.
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 45667788899999999999999998766
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.60 E-value=8.4 Score=31.46 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+..+-++.+....+.|++.+....+.+|.+.+|+..|.++++-...+ ..+...+|.-+++-+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 45555666667788899999999999999999999999999877654 235566777777665
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.34 E-value=23 Score=27.35 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 289 EAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++++.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444455555555666666666666666666666666666655544
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.11 E-value=18 Score=33.75 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=70.8
Q ss_pred HHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhh
Q 044251 560 NAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV----KSYEKLRSILDVK 635 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~l~a~ 635 (686)
..+.+.|.+++|+..+..-++.. +-|...-..|+..+|-.|++++|.+-++...+.. |+. ..|..++......
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHHHHH
Confidence 34567788888888887777652 3367777788888888888888888888777643 444 3555555443221
Q ss_pred h------h----hcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCc
Q 044251 636 V------A----TKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQ 680 (686)
Q Consensus 636 ~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~ 680 (686)
. . ......|...+ +....-...|...+|..+-.++...-|..+
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~l--l~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSL--VSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHcCCCCCCCCCCCHHHHHHH--HHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 1 0 11123332222 222223356677888888888888777544
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.26 E-value=30 Score=26.57 Aligned_cols=79 Identities=16% Similarity=0.058 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
...++|..+-+.+...|. ...+-..-+..+...|+|++|..+.+.+ +.||...|-.|.. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345566666666555542 1222222233455677777777665433 3567776665544 3566666666666
Q ss_pred HHHHHcC
Q 044251 400 LELQDMG 406 (686)
Q Consensus 400 ~~m~~~~ 406 (686)
..+...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6665443
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.88 E-value=72 Score=29.74 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=67.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcc
Q 044251 492 FRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ--PTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 492 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~ 569 (686)
..+.|+++.++.....-++.. |.|...-..|+..+|-.|+++.|.+=++...+.... |...+|..+|.+-
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------- 78 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------- 78 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-------
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-------
Confidence 445677777777777766665 667777777777777778888777777766654321 1233444444431
Q ss_pred HHHHHHHHHHHCCCCC-----CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHC
Q 044251 570 KLPQLLKEMATLNIKP-----DSVTYSTMIYAF--VRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~p-----d~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~ 616 (686)
..=.+...-+-.| ...-...++.++ ...|+.++|..+-.++.+.
T Consensus 79 ---~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 ---QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1112222222222 233344555554 3469999999988888654
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.85 E-value=44 Score=27.32 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 289 EAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444455555566666666666666666666666666666666554
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.74 E-value=1.1e+02 Score=31.10 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044251 390 MQPEIVEKLLLELQDM-----GLEPNAKSYTCLISAYGRPRKMSDMAADAFL 436 (686)
Q Consensus 390 ~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~ 436 (686)
++++.|.+.+..+.+. ...........++..|...+++ +...+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~-~~l~e~i~ 80 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKW-DDLNEQLT 80 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccH-HHHHHHHH
Confidence 4555555555444322 1222344444455555544444 33333333
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.66 E-value=96 Score=30.01 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 374 PTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 374 p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
-|......+...|.+.+++.+|+..|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35566666777777777777777666
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.38 E-value=29 Score=26.57 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLL 400 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 400 (686)
..++|..+-+.+...|. ...+-..-+..+...|+|++|..+.+.+ +.||...|-.|.. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45556555555555532 1222222233455667777776665433 3566666655543 35666666666666
Q ss_pred HHHHcC
Q 044251 401 ELQDMG 406 (686)
Q Consensus 401 ~m~~~~ 406 (686)
.+...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 665443
No 266
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.10 E-value=89 Score=30.64 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHCCCCCCH
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ--TSKLPQLLKEMATLNIKPDS 587 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~ 587 (686)
.+.++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 466777788888999999888877521111 23344455555554332 34567777777776655433
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.22 E-value=29 Score=35.33 Aligned_cols=98 Identities=12% Similarity=0.001 Sum_probs=69.4
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCCHHH--H
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIK--PSIETYTALLDAFRRSGDTGMMMKIWKLMMSE---KVEGTRVT--F 520 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~--~ 520 (686)
.++..+...|.+.|++++|.++|.++...... --...+..+++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677889999999999999999999875332 23467888889999999999999999987644 22222211 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 521 NILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 521 ~~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
..-+..+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112223457899999988877653
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=62.68 E-value=1.1e+02 Score=29.30 Aligned_cols=127 Identities=11% Similarity=-0.001 Sum_probs=64.2
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHH----cC--CCCChhhHhhhHHHHHhcCCHHHHHHHHHH
Q 044251 399 LLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKR----VG--IKPTSHSYTALIHAYSVGGWHEKAYAAFEN 472 (686)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (686)
++-+.+.+..++......++..+.........-..+.+.+.. .| ..-+...+..+...|.+.|++.+|...|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 333344455666666555555554422110111222233322 11 223677888888899999999888876631
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 473 MLREEIKPSIETYTALLDAFRRS---GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFG 544 (686)
Q Consensus 473 m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 544 (686)
|-..+...+..++.-+... |...++ +..+-.+++ .|.-.|++..|..+++.+.
T Consensus 160 ----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 160 ----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred ----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 1111344454444443333 332221 111122222 3445688888888887764
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.61 E-value=50 Score=25.33 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=58.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 178 GLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKA 257 (686)
Q Consensus 178 g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (686)
.+.++|..+-+|+...+. ...+--+-+..+..+|++++|..+.+.+.- ||...|-+|.. .+.|-.+++..-
T Consensus 20 H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~----pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPW----PALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCC----GGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCC----chHHHHHHHHH--HhcccHHHHHHH
Confidence 356788888888877643 112222223457789999999988887763 88888877654 577888888888
Q ss_pred HHHHHhCCCCCCHHHH
Q 044251 258 YEAMEANNVRPDHVTC 273 (686)
Q Consensus 258 ~~~m~~~g~~p~~~~~ 273 (686)
+.++...| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 87777665 4444443
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.42 E-value=57 Score=28.84 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC
Q 044251 531 GQYLEARDVVSEFGKIGLQP-TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP 585 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 585 (686)
+...++..+|..|...|+.- -...|......+...|++.+|.++|+.-.+.+-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33445555555555433322 23445555555555555555555555555554444
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.23 E-value=51 Score=25.32 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=58.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 178 GLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKA 257 (686)
Q Consensus 178 g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (686)
.+.++|..+-+|+...+. ...+--+-+..+..+|++++|..+.+.+.- ||...|-+|.. .+.|-.+++..-
T Consensus 21 H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~----pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAY----PDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCC----GGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCC----chHHHHHHHHH--HhcccHHHHHHH
Confidence 356788888888877643 112222223457789999999999888774 88888877655 466777888777
Q ss_pred HHHHHhCCCCCCHHHH
Q 044251 258 YEAMEANNVRPDHVTC 273 (686)
Q Consensus 258 ~~~m~~~g~~p~~~~~ 273 (686)
+.++...| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 77776655 4444433
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.76 E-value=46 Score=33.79 Aligned_cols=118 Identities=8% Similarity=-0.033 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 463 HEKAYAAFENMLREEI-KP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSE--KVEGTRVTFNILLDGFAKQGQYLEARD 538 (686)
Q Consensus 463 ~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~ 538 (686)
.++-........+... .. -..+...+...|.+.|+++.|.+++.++... +...-...+-.++..+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444444444444322 11 2246677888999999999999999999875 333445678888899999999999999
Q ss_pred HHHHHHh---CCCCCCHHH--HHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 539 VVSEFGK---IGLQPTLMT--YNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 539 ~~~~~~~---~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+.++.. .+..++... ...-+..+...+++.+|...|-+...
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9998753 222222221 11122234467889999998887764
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.46 E-value=87 Score=27.69 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044251 569 SKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVP 620 (686)
Q Consensus 569 ~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 620 (686)
.++..+|..|...|+--. ...|......+-..|++++|.++|+.-++.+-.|
T Consensus 96 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 96 HESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344444444444443332 3334444444444455555555555444444444
No 274
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=60.14 E-value=59 Score=28.19 Aligned_cols=50 Identities=4% Similarity=-0.019 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCC
Q 044251 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIK 584 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 584 (686)
+....++..+.+.|.--|...-..++....+.|.+ ....+-.++..+|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 44556666677777665555555566666554432 345666777777775
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.76 E-value=1.1e+02 Score=26.70 Aligned_cols=167 Identities=17% Similarity=0.054 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
......+..+++.|..+..-.+.+.+.. ++..+-...+.++.+.|+. ++...+..+.. .++...-...+.++
T Consensus 34 ~vR~~A~~~L~~~~~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 34 YVRRAAAYALGKIGDERAVEPLIKALKD----EDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTC----SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 4444445555555553333333333322 4555555556666666543 23333333332 34555555555555
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
...+. ..+...+..++. .++..+-...+.++.+.|..+ +...+..+.. .++..+....+.++.+.+. .++
T Consensus 106 ~~~~~--~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~ 175 (211)
T 3ltm_A 106 GQIGD--ERAVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERV 175 (211)
T ss_dssp HHHCC--GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHH
T ss_pred HHhCc--HHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhH
Confidence 55554 234444444443 245555555666666665533 3333333332 2355566666666666665 344
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 361 EGLFQEMKTKGLKPTSATFNILMDAYSR 388 (686)
Q Consensus 361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (686)
...+..+.+. ++...-...+.++..
T Consensus 176 ~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 176 RAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 4445554442 244444444444443
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.83 E-value=46 Score=32.66 Aligned_cols=74 Identities=7% Similarity=-0.019 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChh--HHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGD--DLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
....++..|...++..+|...++.+.. |.. .+.....++......++.+ .+-.++..+.. +.-........+..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~--p~~-~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL--GEM-KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC--CGG-GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC--chh-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 345678889999999999999888642 211 2244444444444444332 36666666664 44344444444333
No 277
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=50.45 E-value=1.6e+02 Score=27.27 Aligned_cols=137 Identities=12% Similarity=-0.010 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044251 479 KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQG-QYLEARDVVSEFGKIGLQPTLMTYNM 557 (686)
Q Consensus 479 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ 557 (686)
.++..+-...+.++...|+.+ +...+..++. .++..+-...+.++...| ....+...+..+.+ .++..+-..
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~ 211 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIE 211 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHH
Confidence 356665566666666666533 3333333333 234444445555555544 22344444444443 456666667
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 558 LMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631 (686)
Q Consensus 558 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 631 (686)
.+.++.+.|... +...+..+... ++ +....+.++.+.|+ .++...+.++++.. ++.......++.
T Consensus 212 A~~aL~~~~~~~-~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~--~~~~~~~~~~~~ 276 (280)
T 1oyz_A 212 AIIGLSYRKDKR-VLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLYKF--DDNEIITSAIDK 276 (280)
T ss_dssp HHHHHHHTTCGG-GHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTS--SCCHHHHHHHHH
T ss_pred HHHHHHHhCCHh-hHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcC--CCcHHHHHHHHH
Confidence 777777777543 44444444432 33 22344556666666 35666666665433 344444444433
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.77 E-value=1.3e+02 Score=26.26 Aligned_cols=171 Identities=13% Similarity=-0.051 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGAL 312 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (686)
++..+-...+..+.+.|.. .+...+..+.. .++...-...+.++...+. ..+...+..++. .++..+-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGD--ERAVEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCC--GGGHHHHHHHTT---CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHc---CCCHHHHHHH
Confidence 5566666666666666653 33444444443 3455555555566666654 334444444443 2466666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 313 MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQP 392 (686)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (686)
+.++.+.|..+. ...+..+.. .++..+....+.++.+.|+.+ +...+..+.. .++...-...+.++.+.+..
T Consensus 102 ~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 173 (211)
T 3ltm_A 102 AVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE 173 (211)
T ss_dssp HHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 677777666433 333333332 246666666666776666533 4444444443 23555555566666666663
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRP 424 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 424 (686)
.+...+..+.+. ++...-...+.++.+.
T Consensus 174 -~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 174 -RVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp -HHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred -hHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 344444444432 3455555555555443
No 279
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.69 E-value=1.3e+02 Score=26.08 Aligned_cols=108 Identities=20% Similarity=0.030 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
......+..+++.|..+....+.+.+.. ++..+-...+.++.+.|..+ +...+..+.. .++...-...+.++
T Consensus 29 ~vr~~A~~~L~~~~~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 29 YVRRAAAYALGKIGDERAVEPLIKALKD----EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3334444444444443333333333322 44445555555555555432 2333333332 24444444444455
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
...+. ..+...+..++. .++..+-...+.++.+.+.
T Consensus 101 ~~~~~--~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 101 GQIGD--ERAVEPLIKALK---DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHCC--GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHTC
T ss_pred HHhCc--HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCC
Confidence 55443 223333333332 2344444444455544444
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.63 E-value=1.3e+02 Score=26.08 Aligned_cols=169 Identities=13% Similarity=-0.031 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+...-...+..++..+.. .++..+..++.. .++......+..+++.|..+..-.+.+.+.. ++..+-...+
T Consensus 27 ~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d----~~~~vr~~a~ 97 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDE-RAVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPLIKALKD----EDGWVRQSAA 97 (201)
T ss_dssp CHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCh-hHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC----CCHHHHHHHH
Confidence 444455567777777763 444444444432 2456777777888888876554444444433 7788888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK 322 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 322 (686)
.++.+.|+.+ +...+..+.. .++...-...+.++...+. ..+...+..++.. ++..+-...+.++.+.|..
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD--ERAVEPLIKALKD---EDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTC--GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCch
Confidence 8998888754 4444555544 4676666667777777765 3566666666543 4667777777777777764
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCK 353 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 353 (686)
++...+..+... ++..+-...+.++.+
T Consensus 169 -~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 169 -RVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp -HHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 344444444433 244444444444443
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.60 E-value=75 Score=27.07 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 569 SKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 569 ~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
+++.++|..|..+|+--. ...|......+-..|++.+|.++|+..++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 447777888887776554 5566777777778888888888888888877666554
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.21 E-value=1.1e+02 Score=24.80 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHCCCCC
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ--TSKLPQLLKEMATLNIKP 585 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 585 (686)
.+.++.-|...|+.++|.+.++++..-. -....+...+..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3456666666777777777777653111 1122333344444444321 244556666666555443
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.80 E-value=1.2e+02 Score=25.39 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 501 MMKIWKLMMSEKVEG-TRVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 501 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
...+|..|...|+-. -+..|......+...|++.+|.++|+.-++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444444444443322 23334444444444444444444444444333
No 284
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=46.53 E-value=1.3e+02 Score=27.71 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCccHHHHHHHH
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR-GGQTSKLPQLLKE 577 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~ 577 (686)
+-.++.....++++++....++++.+.+...+..--|.|-.+|-. .|....+++++..
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiiss 92 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISS 92 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhH
Confidence 333445555666677666666666666656666666666555542 2333344444443
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.56 E-value=1.3e+02 Score=25.11 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 044251 569 SKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV 622 (686)
Q Consensus 569 ~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 622 (686)
+++.++|..|..+|+--. ...|......+-..|++++|.++++.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 457788888887776554 556777777777888888888888888877766643
No 286
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=44.60 E-value=0.028 Score=57.01 Aligned_cols=264 Identities=14% Similarity=0.145 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 307 EVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAY 386 (686)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 386 (686)
.+|..|.++..+.+++.+|.+-|- +. -|+..|..+|.+..+.|.+++-++++...++..-.| ..=+.|+.+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHH
Confidence 344555555555554444443221 11 134445555555555555555555554444332212 1223455555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHH
Q 044251 387 SRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKA 466 (686)
Q Consensus 387 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 466 (686)
++.++..+.++.+. .||......+-.-|...|.. +.|.-+|. +..-|..|..++.+.|++..|
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lY-eAAKilys---------~isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMY-DAAKLLYN---------NVSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCS-TTSSTTGG---------GSCCCTTTSSSSSSCSGGGSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCH-HHHHHHHH---------hCccHHHHHHHHHHHHHHHHH
Confidence 55555433222211 23322222333333333222 22222221 222345555566666666665
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 467 YAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 467 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
.+.-++ .-+..||..+-.+|...+.+.-|.-.--.++-.. .-+..++..|...|.+++-+.+++.....
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 543221 2356788888889999988776655443333221 11234666788889999999999887654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 044251 547 GLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL-NIKP------DSVTYSTMIYAFVRVRDFKRAFF 608 (686)
Q Consensus 547 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p------d~~~~~~li~~~~~~g~~~~A~~ 608 (686)
. .....+|+-|.-.|++- ++++..+.++....+ +++- ....|.-++-.|.+-.++|.|..
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 4 55788899999888876 355555554432221 1111 23346667777777777776653
No 287
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=43.24 E-value=63 Score=27.67 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=16.5
Q ss_pred hhhcccchhHHHHHHHhhCC
Q 044251 658 VKAKKKGKKDEFWKYKKRHP 677 (686)
Q Consensus 658 ~~~~~~~a~~~f~~~~~~~p 677 (686)
-.|-.++.+.+|...++..|
T Consensus 220 ~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 220 NLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred hcccchhHHHHHHHHHhcCC
Confidence 45567889999999999888
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.65 E-value=1.1e+02 Score=25.61 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHCCCCC
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ--TSKLPQLLKEMATLNIKP 585 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 585 (686)
.+.++.-|...|+.++|.+.++++..-. -....+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4556777777788888888887764111 1122333444444444322 344666666666555443
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.05 E-value=1.6e+02 Score=26.83 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=13.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 044251 242 ISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~ 262 (686)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 556666677777776666654
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=37.53 E-value=4e+02 Score=28.31 Aligned_cols=315 Identities=10% Similarity=0.005 Sum_probs=169.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc--cCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGR--ARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC 248 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (686)
+....+.|++..+..+...+. ..| . ..|..--..... ....+++...+++-+. .+.....-+..+..+.+.
T Consensus 13 a~~a~~~~~~~~~~~l~~~l~-~~p--L--~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~ 85 (618)
T 1qsa_A 13 IKQAWDNRQMDVVEQMMPGLK-DYP--L--YPYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARR 85 (618)
T ss_dssp HHHHHHTTCHHHHHHHSGGGT-TST--T--HHHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHhhc-CCC--c--HHHHHHHHHHhCcccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhC
Confidence 445566788777666554432 222 2 222222222222 2256677777776553 222345556677888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH--HH
Q 044251 249 GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNE--AL 326 (686)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~--A~ 326 (686)
+++...+..+.. .+.+...-.....+....|+ ..+|......+-..|. ..+..+..++..+.+.|.+.. ..
T Consensus 86 ~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~-~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 86 EDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQ-SEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp TCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 888877665443 13455555566677778887 7778887777776653 345667777777776665533 33
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCCCHHH---HHHHHHHHHhcCCHHH
Q 044251 327 IIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK---------GLKPTSAT---FNILMDAYSRRMQPEI 394 (686)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~~---~~~ll~~~~~~~~~~~ 394 (686)
.=++.+...| +...-..|+..+. .+.....+.+..+... .+.++... +...+.-+.+ .+.+.
T Consensus 159 ~R~~~al~~~---~~~~a~~l~~~l~--~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~ 232 (618)
T 1qsa_A 159 ERIRLAMKAG---NTGLVTVLAGQMP--ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAEN 232 (618)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHTCC--GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHhCC--HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHH
Confidence 3334444433 2222222221110 0010000111111111 01222221 1112223333 47899
Q ss_pred HHHHHHHHHHcCCCCCHHHHH----HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHH
Q 044251 395 VEKLLLELQDMGLEPNAKSYT----CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAF 470 (686)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 470 (686)
|..++....+... .+..... .+...+...+.. .++...+....... .+.......+....+.|+++.|...|
T Consensus 233 A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~ 308 (618)
T 1qsa_A 233 ARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVT-DEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWL 308 (618)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCC-HHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999988865432 2332222 222233444323 45777777655433 23333444444455779999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 471 ENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 471 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
..|..... .......-+..++...|+.++|..+|..+..
T Consensus 309 ~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 309 ARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88865322 2344456667788889999999999998864
No 291
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=36.45 E-value=1.5e+02 Score=27.10 Aligned_cols=55 Identities=11% Similarity=0.066 Sum_probs=30.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCccHHHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR-GGQTSKLPQLLKE 577 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~ 577 (686)
++.....++++++....++.+...+...+..--|.|-.+|-. .|....+++++..
T Consensus 10 ~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiiss 65 (248)
T 3uzd_A 10 KARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISS 65 (248)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 344455666676666666666666656666666655555542 2333344444433
No 292
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=36.41 E-value=1.2e+02 Score=26.21 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=9.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC
Q 044251 388 RRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 388 ~~~~~~~a~~~~~~m~~~~~~p 409 (686)
..|+.+.-.++.+.+++.|..+
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCS
T ss_pred HcCCcchHHHHHHHHHHCCCCC
Confidence 3444443344444444444433
No 293
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=35.89 E-value=1.6e+02 Score=27.29 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh-cCCccHHHHHHHHHH
Q 044251 522 ILLDGFAKQGQYLEARDVVSEFGKIG--LQPTLMTYNMLMNAYGR-GGQTSKLPQLLKEMA 579 (686)
Q Consensus 522 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~ 579 (686)
.++......+++++....++++.+.+ ...+..--|.|-.+|-. .|....+++++..+.
T Consensus 13 ~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissie 73 (260)
T 1o9d_A 13 YMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (260)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 44555667788888888888777766 56677766766666643 233444555554443
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.60 E-value=2e+02 Score=24.36 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQP-TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
..|.......+..--.+++ +..+|..|...|+.- -...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 60 knD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp TTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4455555544433333333 555666666555433 355666667777777777777777777777766664
No 295
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=35.23 E-value=1.7e+02 Score=26.99 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh-cCCccHHHHHHHHHH
Q 044251 522 ILLDGFAKQGQYLEARDVVSEFGKIG---LQPTLMTYNMLMNAYGR-GGQTSKLPQLLKEMA 579 (686)
Q Consensus 522 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~ 579 (686)
.++......+++++....++++.+.+ ...+..--|.|-.+|-. .|....+++++..+.
T Consensus 33 ~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissie 94 (260)
T 2npm_A 33 YMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVE 94 (260)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 35555667788888888888877766 56677777777777653 233344555554443
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.12 E-value=1.5e+02 Score=24.01 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 345 NTLINAYCKSNQLEEAEGLFQEMK 368 (686)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~ 368 (686)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555566666666665553
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.69 E-value=83 Score=28.34 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 044251 569 SKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV 622 (686)
Q Consensus 569 ~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 622 (686)
+++..+|..|...|+--. ...|......+-..|++++|..+|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 577788888888777654 566777777888888888888888888877766644
No 298
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=34.31 E-value=39 Score=31.34 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=4.4
Q ss_pred HhcCCHHHHH
Q 044251 387 SRRMQPEIVE 396 (686)
Q Consensus 387 ~~~~~~~~a~ 396 (686)
+..|+.+-+.
T Consensus 156 ~~~~~~~~v~ 165 (285)
T 1wdy_A 156 AEKGHVEVLK 165 (285)
T ss_dssp HHHTCHHHHH
T ss_pred HHcCCHHHHH
Confidence 3445544333
No 299
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.29 E-value=2.3e+02 Score=24.94 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=24.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 459 VGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 459 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
+..+.+.|+-.+-+|++.| .|....-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4567788888888888877 555555555555555444
No 300
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=34.03 E-value=1.5e+02 Score=26.85 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCccHHHHHHHHH
Q 044251 521 NILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR-GGQTSKLPQLLKEM 578 (686)
Q Consensus 521 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m 578 (686)
-.++......+++++....++++...+...+..--|.|-.+|-. .|....+++++..+
T Consensus 9 v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissi 67 (234)
T 2br9_A 9 VYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 67 (234)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34555566778888888888887776667777777777776653 23334455555443
No 301
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=32.12 E-value=80 Score=26.89 Aligned_cols=21 Identities=10% Similarity=0.117 Sum_probs=8.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 044251 310 GALMKSFCDEGLKNEALIIQM 330 (686)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~ 330 (686)
.-++..+.+...+-.....|+
T Consensus 160 ~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 160 DEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp HHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHhh
Confidence 333333334444444444444
No 302
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=31.62 E-value=2.3e+02 Score=24.25 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=47.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHh-c
Q 044251 316 FCDEGLKNEALIIQMEMEKKGIPSNAI--VYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA---TFNILMDAYSR-R 389 (686)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~-~ 389 (686)
.++.|+++....++.. +.. ... .-.+.+...+..|+.+.-.++.+.+++.|..++.. -++.|..++.. .
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~-~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG 87 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSS-CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred HHHcCCHHHHHHHHhc----Ccc-cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 3456777665554432 222 111 12244555566777776677777778877665532 12223222222 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCC
Q 044251 390 MQPEIVEKLLLELQDMGLEPN 410 (686)
Q Consensus 390 ~~~~~a~~~~~~m~~~~~~p~ 410 (686)
.+.....++.+.+.+.|..++
T Consensus 88 ~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 88 NDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCCSS
T ss_pred cchhhHHHHHHHHHHCCCCCC
Confidence 334445566666777776554
No 303
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.39 E-value=1.9e+02 Score=24.44 Aligned_cols=54 Identities=9% Similarity=-0.033 Sum_probs=39.2
Q ss_pred HhcCCccHHHHHHHHHHHCCCCC--CHHHHHHHHH----H--HHHcCCHHHHHHHHHHHHHC
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKP--DSVTYSTMIY----A--FVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~p--d~~~~~~li~----~--~~~~g~~~~A~~~~~~m~~~ 616 (686)
...|++-+|.++|+..-...-.+ +...|..||. + ..+.|+...|..++.+.+..
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34588999999999887654445 4556666666 2 24579999999999998763
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.44 E-value=4.9e+02 Score=29.43 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 044251 272 TCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQ----EVVGALMKSFCDEG 320 (686)
Q Consensus 272 ~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g 320 (686)
-|..++..+-+.+- ++.+.++-+.+++.--.-|. ..++.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a-~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESA-YIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46777777777776 88888888888865322233 35667777766554
No 305
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.43 E-value=1.6e+02 Score=24.50 Aligned_cols=60 Identities=8% Similarity=0.198 Sum_probs=34.4
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 331 EMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ 391 (686)
Q Consensus 331 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (686)
.+.+.|.++ ...-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 17 ~l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 345566653 334445555666666666777777777766655566665555555555443
No 306
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.15 E-value=3.9e+02 Score=25.57 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVK 635 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~ 635 (686)
++..-+..+++.+++..|..+.+++++.+ |+.......-+++.++
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~--p~~~~a~qArkil~~c 253 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKII--SSGPRAEQARKIKNKA 253 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 45566677888899999999988888765 5566666666666443
No 307
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=28.63 E-value=81 Score=29.06 Aligned_cols=24 Identities=4% Similarity=-0.020 Sum_probs=14.2
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCC
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
+..|+.....++++.+.+.|..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHccccchHHHHHHHHHHcCCCCC
Confidence 345555555666666776666554
No 308
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=28.44 E-value=1.2e+02 Score=29.78 Aligned_cols=25 Identities=12% Similarity=0.225 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 238 YNAAISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~ 262 (686)
...+|.-|...|+.++|...++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4567777777788888888877775
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.43 E-value=1.6e+02 Score=24.47 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=29.5
Q ss_pred HHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 438 MKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 438 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
+.+.|.+.+ .--..++..+...+.+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444454422 2233344445454555566666666666555555555555555555555
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.40 E-value=1.3e+02 Score=25.12 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 044251 345 NTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m 367 (686)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33455555555555555555554
No 311
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.09 E-value=2.1e+02 Score=21.79 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=15.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 044251 571 LPQLLKEMATLNIKPDSVTYSTMIYAFVRVR 601 (686)
Q Consensus 571 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 601 (686)
|..+.++....|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4444444544555555555555555554443
No 312
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.05 E-value=5e+02 Score=26.17 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 459 VGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 459 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
+.++.+.|+..+.+|.+.|..|....-..+..+....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 45788999999999999887766655555555554444
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.89 E-value=3.6e+02 Score=24.43 Aligned_cols=91 Identities=8% Similarity=-0.059 Sum_probs=52.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLV-----SPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
.-+..+....++++|+.+.+.....-.... ........+..-.....-.-+..+.+.+.. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 448889999999999999998765411110 001112222222222222233444444422 245666667778
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 044251 244 GLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~ 262 (686)
.+.+-|+-++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8888888888888876654
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.41 E-value=1.2e+02 Score=27.35 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=20.9
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 044251 290 AWEFFEKMNRKGVKLS-QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIP 338 (686)
Q Consensus 290 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 338 (686)
+.++|..|...|+... ...|......+...|++.+|..+|..-++.+-.
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3344444444443322 223344444444444444444444444444333
No 315
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=25.99 E-value=1.8e+02 Score=26.39 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=19.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 524 LDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 524 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
+.....++++++....++.+.+.+...+..--|.|-.+|
T Consensus 15 AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaY 53 (236)
T 3iqu_A 15 AKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAY 53 (236)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 333444555555555555555444444444444444444
No 316
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.09 E-value=2.3e+02 Score=24.86 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=27.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 458 SVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
.+..+.+.|+-.+-+|++.|..|....-..++.+....|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345678888888888888877666666666666655544
No 317
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.76 E-value=71 Score=23.27 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQ 193 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~ 193 (686)
+...+++.++..|+|+.|+.+|+.+.++
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4457799999999999999999999875
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.48 E-value=1.7e+02 Score=24.10 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=21.1
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 453 LIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33334344444455555555555444445555554555554444
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.34 E-value=1.5e+02 Score=24.51 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=31.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044251 332 MEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM 390 (686)
Q Consensus 332 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 390 (686)
+.+.|++.+. .-..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4455665443 233344455455555566777777766655555555554555554444
No 320
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.60 E-value=3.1e+02 Score=24.33 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=29.9
Q ss_pred hHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 453 LIHAYS---VGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 453 li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
+|+++. +..+.+.|+-.+-+|++.|..|....-..++.+....|
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 445543 45678888888888888877766666666666655544
No 321
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.00 E-value=4.9e+02 Score=24.67 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 521 NILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ--TSKLPQLLKEMATLNIKPDSVTYSTMIYAF 597 (686)
Q Consensus 521 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 597 (686)
+.++.-|...|+.++|.+.++++..-.+. ...++..+..++-+.++ .+.+..++..+...|+-+.......+...+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 44555666667777777777665311111 23334444444444322 344556666666656554443333333333
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.81 E-value=1.5e+02 Score=24.03 Aligned_cols=58 Identities=16% Similarity=0.314 Sum_probs=29.7
Q ss_pred HHHcCCCCChhhHhhhHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 438 MKRVGIKPTSHSYTALIHAYSVGG-WHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 438 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
+.+.|.+.+. .-..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444544332 2233444444444 45556666666666555556656555555555554
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.65 E-value=5e+02 Score=29.32 Aligned_cols=111 Identities=8% Similarity=0.059 Sum_probs=58.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044251 488 LLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 488 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 567 (686)
++..|...|..+-+.++... ++.+...--.+..+|...|++++|..+|+++. .|+..+....+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------
Confidence 45556666666655443322 23333333345666667777777777777642 222111000000
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 568 TSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 568 ~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
......++.... .-.....-|..++..+-+.+-++.+.++.+.+++.
T Consensus 880 ~~~~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 880 LREFQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp GHHHHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 001111111100 00112336789999999999999999999999976
No 324
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.27 E-value=1.3e+02 Score=24.83 Aligned_cols=59 Identities=7% Similarity=0.085 Sum_probs=35.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 331 EMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ 391 (686)
Q Consensus 331 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (686)
.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 445566665443 334445555555 56778888888777666676666656666655543
No 325
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=21.91 E-value=4.4e+02 Score=23.70 Aligned_cols=74 Identities=7% Similarity=-0.032 Sum_probs=47.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHh-cCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGK----IGLQPTLMTYNMLMNAYGR-GGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAF 597 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 597 (686)
++.....++++++....++++.. .+...+..--|.|-.+|-. -|....+++++..+.+.. +.+. -...++..|
T Consensus 12 ~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqke-k~~~-~~~~~i~~y 89 (227)
T 2o8p_A 12 RAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ-LNND-ELVKICSEY 89 (227)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSCH-HHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-cCCH-HHHHHHHHH
Confidence 45556678888888888888776 6667777777777777753 355566777777666543 3332 233455555
Q ss_pred H
Q 044251 598 V 598 (686)
Q Consensus 598 ~ 598 (686)
.
T Consensus 90 r 90 (227)
T 2o8p_A 90 V 90 (227)
T ss_dssp H
T ss_pred H
Confidence 3
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.69 E-value=1.9e+02 Score=24.47 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=31.0
Q ss_pred HHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcC
Q 044251 438 MKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE--EIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 438 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g 496 (686)
+.+.|.+.+. --..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3444555332 3344455555555555666666666655 44555555555555555555
No 327
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=21.66 E-value=1.5e+02 Score=27.07 Aligned_cols=136 Identities=12% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHH
Q 044251 158 GIGRVSKRECVQLLELMA-NDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAH 236 (686)
Q Consensus 158 ~~~~~~~~~~~~l~~~l~-~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 236 (686)
+.+.++.+++..++..+. ....-..+..+|..+-.......+..-|..++..+......+++..+|+.+-..+ ....
T Consensus 105 ~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~--dG~I 182 (256)
T 2jul_A 105 PTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINK--DGCI 182 (256)
T ss_dssp TTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSS--SSCB
T ss_pred CCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCC--CCcC
Q ss_pred HHHHHHHHHHHc----C-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044251 237 VYNAAISGLFWC----G-----------RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMN 298 (686)
Q Consensus 237 ~~~~li~~~~~~----g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~ 298 (686)
++.-+...+... | .-+.+..+|..+-.. .....++.-++..+.+... +-+++..|+.++
T Consensus 183 ~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d--~dG~Is~~Ef~~~~~~~~~-l~~~l~~~d~~~ 256 (256)
T 2jul_A 183 TKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRN--QDGVVTIDEFLETCQKDEN-IMNSMQLFENVI 256 (256)
T ss_dssp CHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCS--TTCSBCHHHHHHHHHHCSS-HHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCC--CCCcEeHHHHHHHHHhCHH-HHHHHHhhcccC
No 328
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.24 E-value=3.6e+02 Score=22.50 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK 373 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 373 (686)
+.+..+++.+.+.|+-.|...-..++....+.| .....+-.++.++|+.
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 334455555555555544444444444444433 1234455555566654
No 329
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.92 E-value=7.9e+02 Score=26.29 Aligned_cols=80 Identities=5% Similarity=-0.067 Sum_probs=38.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHh--
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSV-- 459 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 459 (686)
...++.-.|+++.|..++-.. ...+.+++...+..|+-.+. . ..+......-...-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~----~----~~lls~~~~~~~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI----D----SSTRLTKKPKRDIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC----C----CcccccCCCcccccHHHHHHHHHHHh
Confidence 444555678888888776644 24456666666655543321 0 011110000012235556666654
Q ss_pred -cCCHHHHHHHHHHH
Q 044251 460 -GGWHEKAYAAFENM 473 (686)
Q Consensus 460 -~g~~~~A~~~~~~m 473 (686)
..+..+|+++|--+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 46677777776655
No 330
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.88 E-value=1.2e+02 Score=24.98 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=21.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 454 IHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
+..+...+ .-.|.++++.+.+.+...+..|....+..+...|
T Consensus 25 l~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 25 LEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 33333334 4455666666655544455555555555555544
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.48 E-value=1.6e+02 Score=24.47 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=23.8
Q ss_pred hHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044251 453 LIHAYSVGG-WHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 453 li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 334444443 445566666666655555555555555555555553
No 332
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.43 E-value=1.6e+02 Score=23.88 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=31.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044251 332 MEKKGIPSNAIVYNTLINAYCKSN-QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM 390 (686)
Q Consensus 332 ~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 390 (686)
+.+.|.+.+.. -..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44556654432 333444554444 55667777777777665556665555555555444
Done!