Query 044253
Match_columns 139
No_of_seqs 144 out of 1155
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 12:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01596 Methyltransf_3: O-met 99.9 3.2E-24 7E-29 159.8 12.2 120 11-139 70-189 (205)
2 COG4122 Predicted O-methyltran 99.9 1.9E-23 4.1E-28 156.5 12.3 126 3-139 69-202 (219)
3 PLN02476 O-methyltransferase 99.9 6.5E-23 1.4E-27 158.6 12.7 119 12-139 144-262 (278)
4 PLN02589 caffeoyl-CoA O-methyl 99.9 1.5E-22 3.2E-27 154.6 12.9 126 11-139 104-230 (247)
5 PLN02781 Probable caffeoyl-CoA 99.9 1.5E-22 3.2E-27 153.6 12.0 125 11-139 93-217 (234)
6 KOG1663 O-methyltransferase [S 99.8 8.2E-20 1.8E-24 136.6 10.0 121 11-139 98-221 (237)
7 COG1092 Predicted SAM-dependen 99.5 4E-14 8.7E-19 114.3 8.6 95 3-103 231-339 (393)
8 PF10672 Methyltrans_SAM: S-ad 99.4 9.4E-13 2E-17 102.6 9.2 90 3-99 137-237 (286)
9 PF03602 Cons_hypoth95: Conser 99.3 5.3E-12 1.2E-16 92.6 8.7 94 4-103 57-156 (183)
10 PRK15128 23S rRNA m(5)C1962 me 99.3 5.9E-12 1.3E-16 102.2 9.4 91 3-99 234-338 (396)
11 PF12847 Methyltransf_18: Meth 99.3 7.9E-12 1.7E-16 83.4 6.8 85 5-99 17-110 (112)
12 PF13659 Methyltransf_26: Meth 99.3 2.3E-11 4.9E-16 81.9 7.2 86 5-98 16-113 (117)
13 PRK11783 rlmL 23S rRNA m(2)G24 99.2 3.2E-11 6.9E-16 104.1 9.0 91 3-102 552-658 (702)
14 COG2242 CobL Precorrin-6B meth 99.2 4.5E-11 9.8E-16 87.5 7.9 88 5-104 50-139 (187)
15 TIGR00095 RNA methyltransferas 99.2 1.1E-10 2.3E-15 86.1 9.6 94 3-102 63-161 (189)
16 PRK00377 cbiT cobalt-precorrin 99.2 1.2E-10 2.7E-15 85.9 9.1 82 11-101 65-146 (198)
17 COG0742 N6-adenine-specific me 99.1 4.4E-10 9.6E-15 82.5 9.3 94 4-104 58-158 (187)
18 PRK04457 spermidine synthase; 99.1 4.2E-10 9.2E-15 86.8 8.5 81 10-99 89-176 (262)
19 COG4123 Predicted O-methyltran 99.1 2.4E-10 5.2E-15 87.3 6.6 89 2-98 59-168 (248)
20 PF02475 Met_10: Met-10+ like- 99.1 4.6E-10 9.9E-15 83.5 7.4 85 2-98 114-200 (200)
21 PRK10909 rsmD 16S rRNA m(2)G96 99.1 1.2E-09 2.5E-14 81.3 9.2 90 3-102 67-161 (199)
22 COG2520 Predicted methyltransf 99.1 8.4E-10 1.8E-14 87.8 8.4 93 2-105 201-294 (341)
23 TIGR03533 L3_gln_methyl protei 99.0 5.5E-10 1.2E-14 87.0 6.6 80 11-101 145-252 (284)
24 TIGR00138 gidB 16S rRNA methyl 99.0 1.1E-09 2.3E-14 80.2 7.7 76 11-99 66-141 (181)
25 PRK11036 putative S-adenosyl-L 99.0 1.4E-09 3.1E-14 83.1 8.7 87 4-99 59-148 (255)
26 TIGR02469 CbiT precorrin-6Y C5 99.0 1.4E-09 2.9E-14 73.4 7.4 80 11-100 43-122 (124)
27 PRK00107 gidB 16S rRNA methylt 99.0 1.2E-09 2.5E-14 80.5 7.3 79 9-100 67-145 (187)
28 PF13578 Methyltransf_24: Meth 99.0 1.2E-09 2.7E-14 72.6 6.4 80 13-101 25-106 (106)
29 PRK11805 N5-glutamine S-adenos 99.0 1.6E-09 3.5E-14 85.3 7.9 80 11-101 157-264 (307)
30 PLN03075 nicotianamine synthas 99.0 1.6E-09 3.5E-14 84.8 7.1 81 10-100 148-233 (296)
31 PRK08287 cobalt-precorrin-6Y C 98.9 4.2E-09 9.2E-14 76.9 8.0 78 11-101 55-132 (187)
32 PF05175 MTS: Methyltransferas 98.9 3.1E-09 6.8E-14 76.7 6.2 75 12-98 56-138 (170)
33 COG2519 GCD14 tRNA(1-methylade 98.9 4.2E-09 9E-14 80.4 7.0 74 12-98 120-193 (256)
34 COG2226 UbiE Methylase involve 98.9 4.8E-09 1E-13 79.9 7.2 83 11-104 75-160 (238)
35 PRK07402 precorrin-6B methylas 98.9 1.2E-08 2.6E-13 75.0 9.1 82 11-103 64-145 (196)
36 PRK03522 rumB 23S rRNA methylu 98.9 1.2E-08 2.6E-13 80.5 9.2 86 3-98 187-272 (315)
37 TIGR00536 hemK_fam HemK family 98.9 7.2E-09 1.6E-13 80.6 7.5 84 11-105 138-249 (284)
38 PRK13944 protein-L-isoaspartat 98.9 6.9E-09 1.5E-13 77.1 7.0 77 12-101 98-174 (205)
39 PF13847 Methyltransf_31: Meth 98.9 5.1E-09 1.1E-13 73.9 6.0 82 11-102 28-112 (152)
40 TIGR02085 meth_trns_rumB 23S r 98.9 1.3E-08 2.9E-13 82.1 9.1 86 3-99 247-333 (374)
41 COG2518 Pcm Protein-L-isoaspar 98.9 4.4E-09 9.6E-14 78.4 5.5 77 11-101 94-170 (209)
42 PF02353 CMAS: Mycolic acid cy 98.9 1E-08 2.2E-13 79.6 7.6 89 4-105 77-171 (273)
43 TIGR00080 pimt protein-L-isoas 98.8 8.1E-09 1.8E-13 77.1 6.4 73 13-99 104-176 (215)
44 TIGR01177 conserved hypothetic 98.8 8.3E-09 1.8E-13 81.8 6.7 85 4-99 197-293 (329)
45 PRK14903 16S rRNA methyltransf 98.8 3.8E-08 8.2E-13 80.8 10.7 83 11-103 262-369 (431)
46 PRK00811 spermidine synthase; 98.8 2.5E-08 5.3E-13 77.7 9.1 79 12-99 101-190 (283)
47 PLN02396 hexaprenyldihydroxybe 98.8 1.7E-08 3.7E-13 80.0 8.2 89 4-102 146-237 (322)
48 TIGR00479 rumA 23S rRNA (uraci 98.8 2.9E-08 6.2E-13 81.3 9.7 88 3-98 306-394 (431)
49 PLN02823 spermine synthase 98.8 2E-08 4.3E-13 80.1 8.3 80 11-99 127-219 (336)
50 TIGR00308 TRM1 tRNA(guanine-26 98.8 1.8E-08 4E-13 81.3 8.2 86 3-99 58-146 (374)
51 PRK14967 putative methyltransf 98.8 2.3E-08 5E-13 75.0 8.2 80 6-98 53-157 (223)
52 PRK14902 16S rRNA methyltransf 98.8 2.1E-08 4.5E-13 82.5 8.2 83 11-103 275-382 (444)
53 PRK14901 16S rRNA methyltransf 98.8 4.9E-08 1.1E-12 80.1 10.3 85 12-103 278-387 (434)
54 PRK13942 protein-L-isoaspartat 98.8 1.3E-08 2.8E-13 76.1 6.2 74 12-99 102-175 (212)
55 PRK13168 rumA 23S rRNA m(5)U19 98.8 3.7E-08 8.1E-13 81.0 9.4 89 3-99 311-399 (443)
56 TIGR00446 nop2p NOL1/NOP2/sun 98.8 4.1E-08 9E-13 75.7 9.1 80 12-102 97-201 (264)
57 PRK01581 speE spermidine synth 98.8 3.2E-08 7E-13 79.5 8.5 79 12-99 175-267 (374)
58 TIGR00406 prmA ribosomal prote 98.8 2.3E-08 5E-13 78.0 7.6 79 12-102 183-261 (288)
59 TIGR03704 PrmC_rel_meth putati 98.8 1.9E-08 4.2E-13 77.1 6.9 78 11-100 110-216 (251)
60 PLN02366 spermidine synthase 98.8 3.9E-08 8.5E-13 77.6 8.8 80 12-99 116-205 (308)
61 COG2227 UbiG 2-polyprenyl-3-me 98.8 2.5E-08 5.3E-13 75.7 7.1 89 4-104 74-165 (243)
62 PF01209 Ubie_methyltran: ubiE 98.8 1.9E-08 4.1E-13 76.4 6.2 80 11-101 72-154 (233)
63 TIGR00091 tRNA (guanine-N(7)-) 98.7 6.9E-08 1.5E-12 71.1 8.6 80 11-98 40-130 (194)
64 PRK01544 bifunctional N5-gluta 98.7 3.9E-08 8.5E-13 82.2 8.1 80 10-100 161-269 (506)
65 PRK05031 tRNA (uracil-5-)-meth 98.7 8.6E-08 1.9E-12 77.1 9.6 89 3-98 220-318 (362)
66 COG2521 Predicted archaeal met 98.7 6.5E-09 1.4E-13 78.7 2.8 87 3-97 148-242 (287)
67 PRK14968 putative methyltransf 98.7 6.2E-08 1.3E-12 69.9 7.8 83 6-99 40-147 (188)
68 PRK00121 trmB tRNA (guanine-N( 98.7 9.9E-08 2.1E-12 70.8 8.7 80 11-99 64-155 (202)
69 PRK04338 N(2),N(2)-dimethylgua 98.7 8.7E-08 1.9E-12 77.7 8.6 85 3-99 71-157 (382)
70 TIGR03534 RF_mod_PrmC protein- 98.7 1E-07 2.2E-12 71.9 8.3 78 11-100 111-217 (251)
71 PF01135 PCMT: Protein-L-isoas 98.7 3.3E-08 7.1E-13 74.0 5.4 74 12-99 98-171 (209)
72 TIGR00417 speE spermidine synt 98.7 1.4E-07 3E-12 72.9 9.0 80 11-99 96-185 (270)
73 TIGR00537 hemK_rel_arch HemK-r 98.7 7.2E-08 1.6E-12 69.9 6.9 81 6-100 36-140 (179)
74 PF01564 Spermine_synth: Sperm 98.7 7.6E-08 1.6E-12 73.7 7.4 81 12-100 101-191 (246)
75 COG2264 PrmA Ribosomal protein 98.7 3.9E-08 8.3E-13 77.1 5.5 90 3-103 176-266 (300)
76 COG0421 SpeE Spermidine syntha 98.7 1.1E-07 2.4E-12 74.1 8.0 79 12-99 101-189 (282)
77 COG2265 TrmA SAM-dependent met 98.7 1.2E-07 2.6E-12 77.9 8.6 87 3-98 307-394 (432)
78 COG2230 Cfa Cyclopropane fatty 98.7 1.1E-07 2.4E-12 74.0 7.8 88 5-105 88-181 (283)
79 PLN02244 tocopherol O-methyltr 98.7 7E-08 1.5E-12 76.9 6.8 81 11-101 141-224 (340)
80 TIGR00563 rsmB ribosomal RNA s 98.7 1.7E-07 3.7E-12 76.8 9.2 85 11-103 262-371 (426)
81 PRK00312 pcm protein-L-isoaspa 98.6 6.3E-08 1.4E-12 72.0 6.1 76 11-100 100-175 (212)
82 PRK11207 tellurite resistance 98.6 9E-08 2E-12 70.7 6.8 83 4-98 45-132 (197)
83 PRK14904 16S rRNA methyltransf 98.6 1.1E-07 2.4E-12 78.3 8.0 81 11-103 275-380 (445)
84 PRK10901 16S rRNA methyltransf 98.6 1.4E-07 3E-12 77.4 8.5 80 12-101 269-373 (427)
85 PRK03612 spermidine synthase; 98.6 7.9E-08 1.7E-12 80.7 7.0 80 12-100 322-415 (521)
86 COG2890 HemK Methylase of poly 98.6 1.4E-07 3.1E-12 73.4 7.9 82 11-105 134-243 (280)
87 PF09445 Methyltransf_15: RNA 98.6 6.1E-08 1.3E-12 69.9 5.3 63 7-76 17-79 (163)
88 PRK11873 arsM arsenite S-adeno 98.6 1.5E-07 3.3E-12 72.4 7.9 83 12-105 103-188 (272)
89 PF08241 Methyltransf_11: Meth 98.6 2.5E-08 5.4E-13 63.8 3.0 74 11-98 19-95 (95)
90 PRK14966 unknown domain/N5-glu 98.6 1.2E-07 2.5E-12 77.5 7.4 81 10-101 274-382 (423)
91 PRK15001 SAM-dependent 23S rib 98.6 1.6E-07 3.5E-12 76.0 7.8 78 11-99 252-339 (378)
92 TIGR02752 MenG_heptapren 2-hep 98.6 1.5E-07 3.3E-12 70.5 6.9 79 11-100 70-151 (231)
93 TIGR00477 tehB tellurite resis 98.6 1.4E-07 3.1E-12 69.5 6.6 82 4-98 45-131 (195)
94 TIGR02143 trmA_only tRNA (urac 98.6 3.6E-07 7.8E-12 73.3 9.3 89 3-98 211-309 (353)
95 PLN02232 ubiquinone biosynthes 98.6 1.6E-07 3.4E-12 67.3 6.4 78 15-102 1-83 (160)
96 PF06325 PrmA: Ribosomal prote 98.6 5E-08 1.1E-12 76.5 4.0 86 4-103 176-262 (295)
97 PRK15451 tRNA cmo(5)U34 methyl 98.6 1.4E-07 3E-12 72.0 6.2 79 10-100 81-164 (247)
98 smart00828 PKS_MT Methyltransf 98.6 1.5E-07 3.2E-12 70.2 6.3 81 11-102 23-106 (224)
99 PF08704 GCD14: tRNA methyltra 98.6 1.6E-07 3.6E-12 71.9 6.5 77 11-98 65-144 (247)
100 PRK12335 tellurite resistance 98.5 2.3E-07 5E-12 72.2 6.9 82 4-98 135-221 (287)
101 PRK00517 prmA ribosomal protei 98.5 3.4E-07 7.4E-12 69.9 7.7 78 7-102 137-215 (250)
102 PRK09328 N5-glutamine S-adenos 98.5 3.2E-07 6.9E-12 70.3 7.3 78 11-100 132-238 (275)
103 PF13649 Methyltransf_25: Meth 98.5 2.2E-07 4.8E-12 61.2 5.3 71 12-94 25-101 (101)
104 PLN02233 ubiquinone biosynthes 98.5 3.4E-07 7.4E-12 70.5 6.8 82 12-103 99-185 (261)
105 TIGR00740 methyltransferase, p 98.5 6E-07 1.3E-11 67.9 7.8 81 11-103 79-164 (239)
106 PRK11933 yebU rRNA (cytosine-C 98.4 1.2E-06 2.6E-11 72.7 9.1 82 12-103 139-245 (470)
107 KOG2730 Methylase [General fun 98.4 3.7E-07 8.1E-12 68.6 5.4 63 8-76 113-175 (263)
108 PRK14121 tRNA (guanine-N(7)-)- 98.4 1.3E-06 2.9E-11 70.8 8.8 79 11-98 146-233 (390)
109 KOG1540 Ubiquinone biosynthesi 98.4 1E-06 2.2E-11 67.7 7.2 77 12-98 131-212 (296)
110 PRK09489 rsmC 16S ribosomal RN 98.4 1.1E-06 2.4E-11 70.3 7.4 74 11-98 220-301 (342)
111 PRK13943 protein-L-isoaspartat 98.4 1.4E-06 2.9E-11 69.3 7.7 73 13-99 107-179 (322)
112 PF01170 UPF0020: Putative RNA 98.4 1.6E-06 3.5E-11 63.3 7.3 76 14-99 64-150 (179)
113 PF03848 TehB: Tellurite resis 98.4 1.2E-06 2.6E-11 64.8 6.6 85 4-101 45-134 (192)
114 PF05401 NodS: Nodulation prot 98.3 8E-07 1.7E-11 65.8 5.0 81 7-101 61-147 (201)
115 KOG1270 Methyltransferases [Co 98.3 6E-07 1.3E-11 69.0 4.3 86 5-103 105-198 (282)
116 PTZ00098 phosphoethanolamine N 98.3 1.4E-06 3.1E-11 67.1 6.1 80 11-103 75-159 (263)
117 COG1041 Predicted DNA modifica 98.3 1.1E-06 2.4E-11 70.0 5.5 85 3-98 211-308 (347)
118 PRK13255 thiopurine S-methyltr 98.3 1.2E-06 2.6E-11 66.0 5.3 83 4-98 52-153 (218)
119 PLN02336 phosphoethanolamine N 98.3 2.3E-06 4.9E-11 70.8 7.5 81 11-103 289-372 (475)
120 PF08242 Methyltransf_12: Meth 98.3 2.5E-07 5.4E-12 60.5 1.3 78 10-96 19-99 (99)
121 PRK05134 bifunctional 3-demeth 98.3 5.7E-06 1.2E-10 62.0 8.7 83 7-100 66-151 (233)
122 PRK01683 trans-aconitate 2-met 98.3 1.9E-06 4.2E-11 65.6 6.1 72 11-99 55-129 (258)
123 PRK14103 trans-aconitate 2-met 98.3 1.8E-06 3.9E-11 65.9 5.9 70 11-99 53-125 (255)
124 PRK10742 putative methyltransf 98.3 2.7E-06 5.8E-11 65.2 6.5 64 5-77 104-175 (250)
125 PRK00216 ubiE ubiquinone/menaq 98.2 2.6E-06 5.7E-11 63.4 6.1 80 12-101 77-159 (239)
126 TIGR03840 TMPT_Se_Te thiopurin 98.2 1.9E-06 4.2E-11 64.6 5.2 86 4-101 49-153 (213)
127 COG0144 Sun tRNA and rRNA cyto 98.2 4.7E-06 1E-10 67.0 7.7 84 12-103 183-291 (355)
128 cd02440 AdoMet_MTases S-adenos 98.2 9.6E-06 2.1E-10 51.3 7.7 80 10-99 20-103 (107)
129 smart00650 rADc Ribosomal RNA 98.2 4.6E-06 9.9E-11 60.0 6.6 92 6-110 30-123 (169)
130 PRK04266 fibrillarin; Provisio 98.2 5.3E-06 1.2E-10 62.8 6.8 76 12-99 97-175 (226)
131 TIGR01983 UbiG ubiquinone bios 98.2 9.4E-06 2E-10 60.3 8.1 84 7-100 63-149 (224)
132 PLN02672 methionine S-methyltr 98.2 5.3E-06 1.1E-10 74.6 7.5 87 11-106 142-284 (1082)
133 PRK06922 hypothetical protein; 98.2 6.4E-06 1.4E-10 70.6 7.7 83 9-101 440-538 (677)
134 TIGR02716 C20_methyl_CrtF C-20 98.2 4.9E-06 1.1E-10 65.1 6.3 81 11-104 173-258 (306)
135 COG2813 RsmC 16S RNA G1207 met 98.2 7E-06 1.5E-10 64.4 6.9 75 11-98 182-264 (300)
136 COG2263 Predicted RNA methylas 98.1 4.7E-06 1E-10 61.4 5.2 59 3-76 59-118 (198)
137 PF05958 tRNA_U5-meth_tr: tRNA 98.1 6.8E-06 1.5E-10 66.0 6.2 80 3-86 210-299 (352)
138 PRK15068 tRNA mo(5)U34 methylt 98.1 1.3E-05 2.7E-10 63.7 7.5 81 13-104 147-230 (322)
139 PRK11705 cyclopropane fatty ac 98.1 1.1E-05 2.4E-10 65.5 7.2 75 11-102 190-269 (383)
140 PLN02336 phosphoethanolamine N 98.1 1.2E-05 2.7E-10 66.5 7.6 87 6-103 54-145 (475)
141 PRK08317 hypothetical protein; 98.1 1.4E-05 3E-10 59.3 7.2 83 11-105 44-129 (241)
142 PRK10258 biotin biosynthesis p 98.1 5E-06 1.1E-10 63.1 4.8 77 9-101 62-141 (251)
143 TIGR02021 BchM-ChlM magnesium 98.1 1.8E-05 3.9E-10 59.0 7.4 82 5-99 71-157 (219)
144 PF05185 PRMT5: PRMT5 arginine 98.0 1.5E-05 3.2E-10 66.0 7.1 77 11-98 214-295 (448)
145 PF03059 NAS: Nicotianamine sy 98.0 1.1E-05 2.4E-10 62.8 5.9 79 11-99 146-229 (276)
146 TIGR00452 methyltransferase, p 98.0 2E-05 4.4E-10 62.4 7.4 82 12-104 145-229 (314)
147 PRK00536 speE spermidine synth 98.0 1.7E-05 3.6E-10 61.4 6.7 73 12-99 95-170 (262)
148 PF06962 rRNA_methylase: Putat 98.0 1.4E-05 3.1E-10 56.2 5.8 78 13-98 1-90 (140)
149 KOG4300 Predicted methyltransf 98.0 2.2E-05 4.8E-10 58.8 6.9 79 10-98 98-180 (252)
150 PF02005 TRM: N2,N2-dimethylgu 98.0 2.4E-05 5.3E-10 63.4 7.7 78 12-99 75-153 (377)
151 PHA03412 putative methyltransf 98.0 3.2E-05 7E-10 59.0 7.7 99 11-131 76-192 (241)
152 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.0 6.6E-05 1.4E-09 58.6 9.7 82 11-101 110-220 (283)
153 TIGR01934 MenG_MenH_UbiE ubiqu 98.0 1.9E-05 4E-10 58.2 6.3 77 12-101 65-144 (223)
154 PLN02490 MPBQ/MSBQ methyltrans 98.0 1.6E-05 3.6E-10 63.6 6.2 75 11-99 137-214 (340)
155 COG4106 Tam Trans-aconitate me 98.0 6.3E-06 1.4E-10 62.0 3.2 72 11-99 54-128 (257)
156 COG0116 Predicted N6-adenine-s 97.9 2.8E-05 6.2E-10 62.8 6.8 76 13-98 256-342 (381)
157 PRK11727 23S rRNA mA1618 methy 97.9 2.7E-05 5.9E-10 61.9 6.4 63 8-76 135-199 (321)
158 TIGR02072 BioC biotin biosynth 97.9 2.6E-05 5.7E-10 57.9 5.9 76 11-101 58-136 (240)
159 COG4262 Predicted spermidine s 97.9 6E-05 1.3E-09 60.8 8.2 79 12-99 314-406 (508)
160 PF02390 Methyltransf_4: Putat 97.9 4.2E-05 9.2E-10 56.6 6.8 85 6-98 36-131 (195)
161 PRK07580 Mg-protoporphyrin IX 97.9 6.4E-05 1.4E-09 56.0 7.6 81 5-98 79-164 (230)
162 smart00138 MeTrc Methyltransfe 97.9 1.3E-05 2.8E-10 61.9 3.7 80 11-100 132-242 (264)
163 KOG2904 Predicted methyltransf 97.9 2.7E-05 5.9E-10 60.5 5.2 87 6-101 167-286 (328)
164 PHA03411 putative methyltransf 97.9 4.1E-05 8.9E-10 59.6 6.2 49 11-76 88-136 (279)
165 PRK13256 thiopurine S-methyltr 97.8 3E-05 6.5E-10 58.8 4.3 90 6-102 60-165 (226)
166 TIGR03438 probable methyltrans 97.8 0.00016 3.4E-09 56.8 8.6 88 11-103 88-180 (301)
167 PRK11783 rlmL 23S rRNA m(2)G24 97.8 8.1E-05 1.8E-09 64.7 7.0 56 13-76 258-313 (702)
168 PTZ00146 fibrillarin; Provisio 97.7 0.00012 2.6E-09 57.4 7.1 78 12-99 158-236 (293)
169 PF07279 DUF1442: Protein of u 97.7 0.00036 7.8E-09 52.4 9.3 89 4-103 60-152 (218)
170 PF02527 GidB: rRNA small subu 97.7 0.00028 6.1E-09 51.9 8.4 78 8-98 69-146 (184)
171 KOG1271 Methyltransferases [Ge 97.7 5.3E-05 1.1E-09 55.8 4.2 90 4-103 84-184 (227)
172 PF05724 TPMT: Thiopurine S-me 97.7 3.7E-05 7.9E-10 58.0 3.6 85 5-98 53-153 (218)
173 PF04816 DUF633: Family of unk 97.7 0.0001 2.2E-09 55.1 5.4 55 10-74 20-74 (205)
174 COG0220 Predicted S-adenosylme 97.6 0.00061 1.3E-08 51.7 8.8 80 11-98 72-162 (227)
175 PF04989 CmcI: Cephalosporin h 97.6 0.00011 2.4E-09 54.9 4.3 120 11-138 60-183 (206)
176 KOG2187 tRNA uracil-5-methyltr 97.5 0.00015 3.3E-09 60.4 5.3 88 3-96 397-486 (534)
177 PF01861 DUF43: Protein of unk 97.5 0.00016 3.5E-09 55.1 5.0 80 5-94 61-142 (243)
178 PF13489 Methyltransf_23: Meth 97.5 0.00017 3.7E-09 50.3 4.7 75 8-103 41-118 (161)
179 PLN02585 magnesium protoporphy 97.5 0.00044 9.6E-09 54.8 6.7 81 4-98 159-248 (315)
180 PF12147 Methyltransf_20: Puta 97.4 0.00065 1.4E-08 53.3 7.4 91 12-109 162-258 (311)
181 PF05711 TylF: Macrocin-O-meth 97.4 0.00026 5.7E-09 54.4 4.8 73 23-103 141-215 (248)
182 PRK11088 rrmA 23S rRNA methylt 97.4 0.00014 3E-09 56.2 3.2 68 12-99 113-180 (272)
183 COG4076 Predicted RNA methylas 97.4 0.00011 2.3E-09 54.5 2.3 82 4-98 47-133 (252)
184 KOG1562 Spermidine synthase [A 97.4 0.0014 3E-08 51.6 8.4 78 13-98 147-234 (337)
185 PF05891 Methyltransf_PK: AdoM 97.4 0.00027 5.9E-09 53.2 4.5 105 12-133 79-190 (218)
186 TIGR03587 Pse_Me-ase pseudamin 97.3 0.00091 2E-08 49.7 6.7 73 11-102 67-144 (204)
187 KOG1661 Protein-L-isoaspartate 97.3 0.00024 5.2E-09 53.3 3.2 77 12-101 109-194 (237)
188 PRK13699 putative methylase; P 97.3 0.00049 1.1E-08 52.1 5.0 51 40-98 2-70 (227)
189 PRK11524 putative methyltransf 97.2 0.00076 1.7E-08 52.5 5.9 54 38-99 7-79 (284)
190 KOG1122 tRNA and rRNA cytosine 97.2 0.001 2.2E-08 54.5 6.6 80 12-100 267-371 (460)
191 PRK11188 rrmJ 23S rRNA methylt 97.2 0.0011 2.3E-08 49.5 6.4 72 12-99 77-164 (209)
192 PF10294 Methyltransf_16: Puta 97.2 0.0013 2.8E-08 47.7 6.5 87 5-99 61-155 (173)
193 PTZ00338 dimethyladenosine tra 97.2 0.0012 2.6E-08 51.9 6.7 57 9-77 56-112 (294)
194 COG1867 TRM1 N2,N2-dimethylgua 97.2 0.0017 3.6E-08 52.4 7.1 76 13-99 78-153 (380)
195 KOG2899 Predicted methyltransf 97.1 0.0012 2.5E-08 50.8 5.4 89 8-105 79-214 (288)
196 PF05971 Methyltransf_10: Prot 97.1 0.00069 1.5E-08 53.4 4.1 64 7-76 122-187 (299)
197 PRK00050 16S rRNA m(4)C1402 me 97.0 0.0018 3.9E-08 51.0 5.7 56 11-75 44-99 (296)
198 TIGR00438 rrmJ cell division p 97.0 0.0039 8.4E-08 45.4 7.1 72 12-99 58-145 (188)
199 KOG1499 Protein arginine N-met 97.0 0.00077 1.7E-08 53.8 3.5 82 7-99 78-166 (346)
200 COG0357 GidB Predicted S-adeno 97.0 0.0026 5.7E-08 47.9 6.1 78 8-98 88-166 (215)
201 PF05430 Methyltransf_30: S-ad 96.9 0.0022 4.8E-08 44.3 5.1 51 39-98 32-88 (124)
202 PRK05785 hypothetical protein; 96.9 0.0021 4.6E-08 48.4 5.4 65 11-94 74-141 (226)
203 PRK01544 bifunctional N5-gluta 96.8 0.0071 1.5E-07 50.9 8.2 82 8-98 368-460 (506)
204 KOG3420 Predicted RNA methylas 96.8 0.0012 2.7E-08 47.0 2.8 53 12-76 72-124 (185)
205 PRK06202 hypothetical protein; 96.7 0.0039 8.4E-08 46.8 5.4 77 12-104 89-170 (232)
206 KOG2352 Predicted spermine/spe 96.7 0.0027 5.9E-08 52.8 4.8 94 8-105 316-421 (482)
207 KOG2915 tRNA(1-methyladenosine 96.7 0.0037 8.1E-08 48.7 5.2 74 11-94 130-203 (314)
208 KOG2078 tRNA modification enzy 96.7 0.0016 3.4E-08 53.5 3.2 51 2-52 262-313 (495)
209 PF08003 Methyltransf_9: Prote 96.6 0.0087 1.9E-07 47.3 6.9 83 12-105 139-224 (315)
210 PF04445 SAM_MT: Putative SAM- 96.5 0.0019 4.2E-08 49.2 2.7 57 9-74 95-159 (234)
211 PF02384 N6_Mtase: N-6 DNA Met 96.5 0.0045 9.9E-08 48.4 4.9 79 11-97 77-180 (311)
212 PF01739 CheR: CheR methyltran 96.5 0.002 4.4E-08 47.8 2.6 81 11-101 64-176 (196)
213 PRK14896 ksgA 16S ribosomal RN 96.4 0.01 2.2E-07 45.6 5.9 56 7-77 47-102 (258)
214 PRK10611 chemotaxis methyltran 96.4 0.0015 3.1E-08 51.3 1.2 81 11-100 147-262 (287)
215 TIGR00006 S-adenosyl-methyltra 96.3 0.015 3.2E-07 46.0 6.6 57 12-75 45-101 (305)
216 COG2384 Predicted SAM-dependen 96.3 0.015 3.3E-07 43.9 6.2 54 11-74 40-93 (226)
217 KOG1500 Protein arginine N-met 96.3 0.0093 2E-07 48.0 5.3 75 11-97 200-279 (517)
218 PF07021 MetW: Methionine bios 96.2 0.0096 2.1E-07 44.1 4.8 75 10-101 35-112 (193)
219 KOG1709 Guanidinoacetate methy 96.2 0.019 4.1E-07 43.6 6.4 83 13-105 126-211 (271)
220 KOG2671 Putative RNA methylase 96.2 0.0056 1.2E-07 49.2 3.6 63 5-76 224-294 (421)
221 KOG1253 tRNA methyltransferase 96.1 0.01 2.2E-07 49.6 5.0 81 12-99 135-215 (525)
222 COG4976 Predicted methyltransf 96.1 0.0023 5E-08 48.9 0.9 94 6-113 142-241 (287)
223 TIGR02081 metW methionine bios 96.1 0.0062 1.4E-07 44.5 3.2 65 11-91 36-103 (194)
224 KOG3191 Predicted N6-DNA-methy 96.0 0.053 1.1E-06 40.1 7.5 77 12-101 69-169 (209)
225 PF00891 Methyltransf_2: O-met 95.9 0.01 2.2E-07 44.7 3.9 78 5-103 118-202 (241)
226 KOG2361 Predicted methyltransf 95.9 0.01 2.2E-07 45.5 3.8 83 12-103 98-186 (264)
227 PRK00274 ksgA 16S ribosomal RN 95.8 0.033 7.2E-07 43.1 6.5 67 7-87 60-126 (272)
228 TIGR02987 met_A_Alw26 type II 95.8 0.018 4E-07 48.4 5.4 59 12-76 64-122 (524)
229 COG0275 Predicted S-adenosylme 95.8 0.04 8.6E-07 43.6 6.6 58 11-75 48-105 (314)
230 KOG3010 Methyltransferase [Gen 95.8 0.0044 9.5E-08 47.5 1.2 77 12-98 56-135 (261)
231 PRK01747 mnmC bifunctional tRN 95.5 0.09 2E-06 45.5 8.6 51 39-98 148-204 (662)
232 TIGR00755 ksgA dimethyladenosi 95.4 0.057 1.2E-06 41.2 6.2 65 8-87 48-115 (253)
233 COG3963 Phospholipid N-methylt 95.3 0.073 1.6E-06 38.9 6.2 76 12-98 74-154 (194)
234 KOG1541 Predicted protein carb 95.2 0.02 4.3E-07 43.6 3.1 73 11-98 72-158 (270)
235 PF03291 Pox_MCEL: mRNA cappin 95.0 0.068 1.5E-06 42.8 5.8 83 11-98 85-184 (331)
236 PF00107 ADH_zinc_N: Zinc-bind 94.7 0.12 2.6E-06 34.7 5.8 80 10-103 13-92 (130)
237 COG0030 KsgA Dimethyladenosine 94.7 0.16 3.5E-06 39.3 7.1 60 6-77 47-106 (259)
238 PF01795 Methyltransf_5: MraW 94.6 0.042 9.1E-07 43.6 3.5 61 10-76 43-103 (310)
239 COG1352 CheR Methylase of chem 94.5 0.053 1.2E-06 42.2 4.0 80 10-99 128-240 (268)
240 PF01269 Fibrillarin: Fibrilla 94.5 0.19 4E-06 38.2 6.7 77 12-98 99-176 (229)
241 COG1568 Predicted methyltransf 94.4 0.048 1E-06 42.9 3.5 79 6-93 170-250 (354)
242 KOG0820 Ribosomal RNA adenine 94.3 0.086 1.9E-06 41.3 4.7 55 10-76 79-133 (315)
243 KOG0822 Protein kinase inhibit 94.1 0.031 6.7E-07 47.3 2.0 78 10-98 394-476 (649)
244 PRK04148 hypothetical protein; 93.9 0.13 2.9E-06 35.9 4.7 68 5-89 33-100 (134)
245 PF02153 PDH: Prephenate dehyd 93.8 0.078 1.7E-06 40.7 3.6 27 3-29 1-29 (258)
246 COG0677 WecC UDP-N-acetyl-D-ma 93.8 0.34 7.3E-06 39.9 7.2 99 1-107 22-135 (436)
247 KOG1975 mRNA cap methyltransfe 93.6 0.22 4.7E-06 40.0 5.9 82 11-97 140-234 (389)
248 COG1064 AdhP Zn-dependent alco 93.3 0.4 8.6E-06 38.6 6.9 73 10-102 189-261 (339)
249 TIGR03439 methyl_EasF probable 93.1 0.57 1.2E-05 37.4 7.6 84 11-99 104-196 (319)
250 PF07942 N2227: N2227-like pro 93.1 0.055 1.2E-06 42.2 1.8 31 66-97 165-199 (270)
251 PF00072 Response_reg: Respons 92.8 1.7 3.6E-05 27.8 9.3 73 14-97 1-75 (112)
252 KOG1269 SAM-dependent methyltr 92.1 0.15 3.2E-06 41.4 3.1 82 10-101 132-216 (364)
253 PF04378 RsmJ: Ribosomal RNA s 92.0 0.46 1E-05 36.5 5.5 80 9-97 77-162 (245)
254 PF11899 DUF3419: Protein of u 91.9 0.45 9.7E-06 38.9 5.6 63 34-105 272-339 (380)
255 PF03721 UDPG_MGDP_dh_N: UDP-g 91.2 0.45 9.7E-06 34.8 4.6 93 2-108 14-128 (185)
256 COG1063 Tdh Threonine dehydrog 91.1 0.5 1.1E-05 37.8 5.2 80 11-104 193-273 (350)
257 KOG2198 tRNA cytosine-5-methyl 90.7 0.98 2.1E-05 36.7 6.3 86 13-103 185-299 (375)
258 PF08123 DOT1: Histone methyla 90.6 2.1 4.6E-05 31.9 7.8 82 12-102 67-160 (205)
259 COG1889 NOP1 Fibrillarin-like 90.6 1.6 3.4E-05 33.0 6.9 77 12-98 101-178 (231)
260 PF06859 Bin3: Bicoid-interact 90.4 0.21 4.6E-06 33.7 2.0 41 66-106 1-50 (110)
261 KOG1227 Putative methyltransfe 90.3 0.17 3.7E-06 40.2 1.7 54 10-74 217-270 (351)
262 PF08351 DUF1726: Domain of un 90.1 1.3 2.8E-05 28.9 5.5 72 66-138 11-88 (92)
263 COG0500 SmtA SAM-dependent met 89.7 1.8 3.9E-05 27.7 6.2 84 12-105 73-160 (257)
264 TIGR01444 fkbM_fam methyltrans 89.5 0.59 1.3E-05 31.9 3.8 36 12-48 23-58 (143)
265 PF06080 DUF938: Protein of un 89.1 0.72 1.6E-05 34.5 4.2 84 13-99 51-140 (204)
266 PF05148 Methyltransf_8: Hypot 88.7 0.91 2E-05 34.3 4.5 35 66-100 122-158 (219)
267 PF10354 DUF2431: Domain of un 87.0 0.94 2E-05 32.6 3.6 81 14-100 26-125 (166)
268 PF01234 NNMT_PNMT_TEMT: NNMT/ 86.6 0.68 1.5E-05 35.8 2.8 95 6-105 74-204 (256)
269 PF05219 DREV: DREV methyltran 86.1 3.2 6.8E-05 32.3 6.3 70 12-101 117-189 (265)
270 PF04672 Methyltransf_19: S-ad 85.9 2.8 6E-05 32.7 5.9 92 10-103 94-193 (267)
271 KOG1596 Fibrillarin and relate 85.6 2.8 6.1E-05 32.6 5.7 75 14-99 184-260 (317)
272 KOG0024 Sorbitol dehydrogenase 85.5 4.8 0.0001 32.5 7.1 83 6-98 189-271 (354)
273 PRK05808 3-hydroxybutyryl-CoA 85.4 5.6 0.00012 30.6 7.5 80 4-98 19-116 (282)
274 KOG2798 Putative trehalase [Ca 85.3 0.92 2E-05 36.4 3.0 31 66-97 259-293 (369)
275 COG0286 HsdM Type I restrictio 85.2 2.7 5.8E-05 35.4 5.9 90 12-106 215-335 (489)
276 COG3510 CmcI Cephalosporin hyd 85.0 6.7 0.00015 29.5 7.2 86 12-107 98-187 (237)
277 KOG2912 Predicted DNA methylas 84.7 0.94 2E-05 36.5 2.8 61 11-75 126-187 (419)
278 COG2961 ComJ Protein involved 84.7 3.9 8.4E-05 31.8 6.1 78 11-97 110-193 (279)
279 PTZ00357 methyltransferase; Pr 84.6 1.4 3E-05 39.1 4.0 82 11-95 728-830 (1072)
280 COG2910 Putative NADH-flavin r 84.3 6.8 0.00015 29.3 7.0 115 7-138 20-147 (211)
281 COG3129 Predicted SAM-dependen 84.2 1.3 2.8E-05 34.2 3.3 63 9-77 100-164 (292)
282 COG0686 Ald Alanine dehydrogen 84.2 4.8 0.0001 32.4 6.6 72 11-97 191-265 (371)
283 PRK09880 L-idonate 5-dehydroge 84.1 3.9 8.6E-05 32.1 6.2 72 13-101 196-267 (343)
284 PTZ00142 6-phosphogluconate de 83.6 4.1 8.9E-05 34.2 6.4 83 2-97 15-98 (470)
285 cd02037 MRP-like MRP (Multiple 83.5 1.7 3.6E-05 30.8 3.5 22 4-25 21-42 (169)
286 COG3897 Predicted methyltransf 83.1 2.2 4.8E-05 32.0 4.1 78 5-98 95-176 (218)
287 PRK13849 putative crown gall t 83.0 6.8 0.00015 29.6 6.9 21 4-24 23-43 (231)
288 PF01555 N6_N4_Mtase: DNA meth 83.0 1.7 3.7E-05 31.5 3.5 19 81-99 37-55 (231)
289 PF07091 FmrO: Ribosomal RNA m 82.9 1.1 2.5E-05 34.5 2.6 58 2-72 118-177 (251)
290 PF00398 RrnaAD: Ribosomal RNA 82.1 2.5 5.5E-05 32.4 4.3 69 10-88 51-119 (262)
291 TIGR00745 apbA_panE 2-dehydrop 82.0 1.7 3.7E-05 33.2 3.3 33 66-98 59-91 (293)
292 PF01210 NAD_Gly3P_dh_N: NAD-d 81.8 5.4 0.00012 28.0 5.6 79 6-98 17-101 (157)
293 KOG0780 Signal recognition par 81.7 10 0.00022 31.6 7.6 82 18-103 139-225 (483)
294 PRK11064 wecC UDP-N-acetyl-D-m 81.6 4.3 9.3E-05 33.4 5.7 91 2-103 17-122 (415)
295 cd08294 leukotriene_B4_DH_like 81.6 8.4 0.00018 29.6 7.1 73 10-98 167-239 (329)
296 cd08281 liver_ADH_like1 Zinc-d 81.0 6.7 0.00015 31.2 6.5 75 11-100 215-290 (371)
297 COG2130 Putative NADP-dependen 80.4 8.9 0.00019 30.8 6.8 76 9-99 173-248 (340)
298 TIGR00478 tly hemolysin TlyA f 79.5 3 6.5E-05 31.6 3.9 76 4-98 90-169 (228)
299 COG0745 OmpR Response regulato 79.3 20 0.00043 27.1 8.3 65 13-89 2-68 (229)
300 cd08293 PTGR2 Prostaglandin re 79.1 9.5 0.00021 29.6 6.7 73 11-98 179-252 (345)
301 PF14740 DUF4471: Domain of un 78.9 4.1 8.9E-05 32.1 4.5 57 39-103 201-257 (289)
302 PF07015 VirC1: VirC1 protein; 78.4 6.8 0.00015 29.9 5.5 65 6-74 25-91 (231)
303 PRK07417 arogenate dehydrogena 78.4 5.5 0.00012 30.7 5.1 72 4-96 16-87 (279)
304 TIGR03451 mycoS_dep_FDH mycoth 78.3 11 0.00024 29.8 6.9 77 11-101 200-277 (358)
305 PRK10309 galactitol-1-phosphat 78.2 9.8 0.00021 29.8 6.6 77 11-101 184-261 (347)
306 PRK08293 3-hydroxybutyryl-CoA 78.1 11 0.00023 29.2 6.6 81 4-98 19-118 (287)
307 PRK10840 transcriptional regul 76.9 25 0.00055 25.4 9.3 78 12-98 4-86 (216)
308 KOG3178 Hydroxyindole-O-methyl 76.5 8.3 0.00018 31.2 5.7 72 14-103 202-278 (342)
309 TIGR02825 B4_12hDH leukotriene 76.5 17 0.00036 28.1 7.4 74 10-99 162-236 (325)
310 PRK12557 H(2)-dependent methyl 76.4 16 0.00034 29.4 7.3 77 3-97 35-113 (342)
311 KOG3201 Uncharacterized conser 75.8 11 0.00024 27.7 5.6 81 11-99 54-139 (201)
312 cd00315 Cyt_C5_DNA_methylase C 75.8 2.2 4.8E-05 33.0 2.3 50 13-77 24-73 (275)
313 PF10237 N6-adenineMlase: Prob 75.6 5.3 0.00011 28.8 4.0 33 66-98 86-121 (162)
314 cd08295 double_bond_reductase_ 74.9 18 0.0004 28.1 7.3 74 10-98 175-249 (338)
315 KOG0519 Sensory transduction h 74.7 7.7 0.00017 34.7 5.6 59 9-77 664-722 (786)
316 PF13679 Methyltransf_32: Meth 74.7 3.2 7E-05 28.6 2.7 41 10-50 52-94 (141)
317 PF01728 FtsJ: FtsJ-like methy 74.2 2.8 6E-05 30.0 2.3 74 11-101 48-140 (181)
318 cd08239 THR_DH_like L-threonin 74.0 15 0.00032 28.5 6.6 76 10-100 186-262 (339)
319 TIGR00959 ffh signal recogniti 73.3 23 0.0005 29.5 7.7 87 10-101 127-222 (428)
320 PRK09260 3-hydroxybutyryl-CoA 73.0 9.9 0.00022 29.3 5.3 82 4-99 17-116 (288)
321 PRK05703 flhF flagellar biosyn 72.9 16 0.00034 30.3 6.7 55 11-75 251-308 (424)
322 PLN03154 putative allyl alcoho 72.5 23 0.0005 28.0 7.4 76 10-100 182-258 (348)
323 cd08254 hydroxyacyl_CoA_DH 6-h 72.4 20 0.00044 27.4 7.0 74 11-99 189-262 (338)
324 PRK14620 NAD(P)H-dependent gly 72.4 10 0.00022 29.8 5.3 78 7-97 19-103 (326)
325 PRK10867 signal recognition pa 72.3 26 0.00057 29.2 7.8 83 11-101 129-223 (433)
326 PHA01634 hypothetical protein 72.1 6.2 0.00014 27.8 3.5 49 12-74 52-100 (156)
327 PRK05708 2-dehydropantoate 2-r 72.1 4.9 0.00011 31.5 3.4 82 3-98 17-102 (305)
328 PRK11760 putative 23S rRNA C24 71.9 5.9 0.00013 32.2 3.8 67 8-93 230-296 (357)
329 KOG1201 Hydroxysteroid 17-beta 71.8 18 0.00038 28.8 6.4 67 3-75 54-123 (300)
330 PHA02518 ParA-like protein; Pr 71.4 5.4 0.00012 28.8 3.3 19 5-23 23-41 (211)
331 PLN02827 Alcohol dehydrogenase 71.1 19 0.00042 28.8 6.7 73 13-100 220-295 (378)
332 PRK00094 gpsA NAD(P)H-dependen 70.9 9.6 0.00021 29.6 4.8 80 4-97 17-102 (325)
333 TIGR03201 dearomat_had 6-hydro 70.8 20 0.00043 28.2 6.6 79 10-101 189-273 (349)
334 KOG2940 Predicted methyltransf 70.4 2.4 5.3E-05 32.8 1.3 74 12-98 96-172 (325)
335 cd05565 PTS_IIB_lactose PTS_II 70.4 24 0.00052 23.2 5.9 59 22-95 15-73 (99)
336 cd08237 ribitol-5-phosphate_DH 70.2 20 0.00044 28.1 6.6 68 11-100 189-256 (341)
337 PRK15001 SAM-dependent 23S rib 70.1 13 0.00028 30.4 5.5 75 11-99 64-141 (378)
338 PLN02353 probable UDP-glucose 69.9 7.4 0.00016 32.7 4.2 28 2-29 15-44 (473)
339 PRK06249 2-dehydropantoate 2-r 69.7 5.5 0.00012 31.2 3.2 33 66-98 72-104 (313)
340 PRK09958 DNA-binding transcrip 69.2 36 0.00078 23.8 9.1 54 13-76 2-55 (204)
341 cd05292 LDH_2 A subgroup of L- 69.0 34 0.00075 26.8 7.6 59 3-75 15-76 (308)
342 cd08291 ETR_like_1 2-enoyl thi 69.0 26 0.00057 27.0 6.9 75 10-99 167-241 (324)
343 cd08285 NADP_ADH NADP(H)-depen 68.8 28 0.00061 27.2 7.1 74 13-100 193-266 (351)
344 PRK13435 response regulator; P 68.7 24 0.00053 23.5 6.0 55 11-75 5-59 (145)
345 PRK10037 cell division protein 68.7 13 0.00029 27.9 5.1 20 4-23 23-42 (250)
346 COG1189 Predicted rRNA methyla 68.3 4.3 9.4E-05 31.2 2.3 74 11-98 102-176 (245)
347 PRK09424 pntA NAD(P) transhydr 68.3 47 0.001 28.4 8.6 82 10-101 187-286 (509)
348 PLN02740 Alcohol dehydrogenase 68.2 34 0.00073 27.3 7.5 75 11-100 222-300 (381)
349 PF03446 NAD_binding_2: NAD bi 68.1 19 0.00041 25.3 5.5 27 3-29 16-42 (163)
350 PF02254 TrkA_N: TrkA-N domain 68.0 30 0.00065 22.4 6.3 71 12-98 22-94 (116)
351 TIGR03366 HpnZ_proposed putati 67.8 36 0.00079 25.8 7.4 76 11-102 144-220 (280)
352 KOG3045 Predicted RNA methylas 67.7 4.8 0.0001 31.7 2.4 24 78-101 242-265 (325)
353 PRK06035 3-hydroxyacyl-CoA deh 67.5 21 0.00045 27.6 6.0 79 4-97 19-118 (291)
354 PRK09422 ethanol-active dehydr 67.4 39 0.00085 26.0 7.6 73 10-98 186-259 (338)
355 PF09243 Rsm22: Mitochondrial 67.1 12 0.00026 29.0 4.6 24 12-35 59-82 (274)
356 PRK07502 cyclohexadienyl dehyd 67.0 20 0.00043 27.9 5.8 65 12-96 32-96 (307)
357 TIGR00872 gnd_rel 6-phosphoglu 66.6 25 0.00055 27.3 6.4 74 4-96 16-89 (298)
358 COG2204 AtoC Response regulato 66.5 58 0.0013 27.5 8.7 67 11-88 4-72 (464)
359 PRK07530 3-hydroxybutyryl-CoA 66.5 35 0.00077 26.3 7.1 80 4-98 20-117 (292)
360 PRK11466 hybrid sensory histid 66.1 66 0.0014 28.7 9.6 68 11-88 681-750 (914)
361 KOG2456 Aldehyde dehydrogenase 66.0 39 0.00084 28.3 7.3 59 8-75 128-189 (477)
362 PRK06130 3-hydroxybutyryl-CoA 66.0 24 0.00053 27.4 6.2 79 5-97 21-112 (311)
363 PRK06522 2-dehydropantoate 2-r 65.9 25 0.00055 26.9 6.2 76 8-98 20-98 (304)
364 PRK12921 2-dehydropantoate 2-r 65.8 11 0.00024 29.0 4.2 33 66-98 68-100 (305)
365 cd08238 sorbose_phosphate_red 65.5 19 0.00042 29.1 5.7 74 13-98 205-286 (410)
366 PRK10529 DNA-binding transcrip 65.4 39 0.00085 24.0 6.9 65 12-87 2-68 (225)
367 KOG0022 Alcohol dehydrogenase, 65.3 48 0.001 27.0 7.6 76 8-98 214-292 (375)
368 KOG3115 Methyltransferase-like 65.2 18 0.0004 27.5 5.0 84 9-98 82-181 (249)
369 TIGR00064 ftsY signal recognit 65.2 62 0.0014 25.0 8.3 82 8-101 97-200 (272)
370 TIGR01425 SRP54_euk signal rec 65.1 56 0.0012 27.3 8.3 80 10-101 127-222 (429)
371 PRK11697 putative two-componen 65.0 29 0.00062 25.3 6.1 56 12-76 2-57 (238)
372 PRK10360 DNA-binding transcrip 64.3 45 0.00098 23.1 7.1 55 13-76 3-57 (196)
373 TIGR03026 NDP-sugDHase nucleot 64.1 46 0.001 27.1 7.7 27 2-28 14-40 (411)
374 PRK15347 two component system 63.7 58 0.0012 29.0 8.7 55 12-77 691-745 (921)
375 PF11599 AviRa: RRNA methyltra 63.5 6.7 0.00014 30.0 2.4 24 10-33 76-99 (246)
376 PRK10904 DNA adenine methylase 62.8 26 0.00056 27.1 5.7 29 38-76 156-184 (271)
377 PLN02545 3-hydroxybutyryl-CoA 62.6 44 0.00096 25.8 7.0 78 6-98 22-117 (295)
378 PF02558 ApbA: Ketopantoate re 62.5 14 0.00031 25.2 3.9 33 66-98 67-99 (151)
379 TIGR00853 pts-lac PTS system, 62.5 40 0.00086 21.8 5.9 55 23-92 19-73 (95)
380 KOG0781 Signal recognition par 62.4 39 0.00084 29.0 6.9 57 66-136 466-527 (587)
381 cd05564 PTS_IIB_chitobiose_lic 62.1 40 0.00086 21.7 6.5 53 23-90 15-67 (96)
382 PRK09191 two-component respons 61.9 62 0.0013 23.8 9.0 55 12-76 138-192 (261)
383 COG1062 AdhC Zn-dependent alco 61.9 40 0.00086 27.5 6.6 73 11-98 210-283 (366)
384 PRK08324 short chain dehydroge 61.9 61 0.0013 28.4 8.4 59 8-75 443-507 (681)
385 KOG1501 Arginine N-methyltrans 61.3 11 0.00025 31.8 3.6 39 11-49 89-127 (636)
386 cd08286 FDH_like_ADH2 formalde 61.0 41 0.00089 26.1 6.7 73 12-98 192-264 (345)
387 PRK15411 rcsA colanic acid cap 60.9 64 0.0014 23.7 9.4 77 13-98 2-82 (207)
388 cd08283 FDH_like_1 Glutathione 60.8 31 0.00067 27.6 6.0 77 13-100 211-306 (386)
389 PRK13869 plasmid-partitioning 60.7 13 0.00027 30.6 3.8 20 4-23 143-162 (405)
390 COG0784 CheY FOG: CheY-like re 60.6 42 0.00092 21.5 6.0 68 10-88 4-75 (130)
391 COG0270 Dcm Site-specific DNA 60.1 24 0.00052 28.0 5.2 74 13-101 27-117 (328)
392 KOG1208 Dehydrogenases with di 60.0 54 0.0012 26.1 7.1 68 4-74 52-122 (314)
393 PF03807 F420_oxidored: NADP o 59.6 26 0.00056 21.9 4.5 65 12-97 26-91 (96)
394 PRK07066 3-hydroxybutyryl-CoA 59.5 39 0.00084 27.0 6.3 80 5-98 24-117 (321)
395 TIGR02956 TMAO_torS TMAO reduc 59.3 98 0.0021 27.8 9.4 56 11-77 702-757 (968)
396 COG0293 FtsJ 23S rRNA methylas 59.2 30 0.00065 25.9 5.3 72 14-101 73-160 (205)
397 PRK09287 6-phosphogluconate de 58.6 35 0.00076 28.6 6.1 82 2-97 4-86 (459)
398 PLN02350 phosphogluconate dehy 58.4 34 0.00073 29.1 6.0 28 2-29 20-47 (493)
399 COG1444 Predicted P-loop ATPas 58.4 47 0.001 29.8 7.0 72 66-137 92-168 (758)
400 PRK11063 metQ DL-methionine tr 57.9 86 0.0019 24.2 8.4 56 12-75 130-204 (271)
401 COG0604 Qor NADPH:quinone redu 57.4 58 0.0013 25.8 7.0 83 4-101 159-242 (326)
402 cd08233 butanediol_DH_like (2R 57.1 58 0.0013 25.4 6.9 76 11-100 196-272 (351)
403 cd08300 alcohol_DH_class_III c 57.0 70 0.0015 25.3 7.5 75 11-100 210-288 (368)
404 TIGR03453 partition_RepA plasm 56.6 17 0.00036 29.5 3.8 20 4-23 126-145 (387)
405 TIGR00873 gnd 6-phosphoglucona 56.2 45 0.00099 28.0 6.4 27 3-29 14-40 (467)
406 cd05188 MDR Medium chain reduc 56.2 67 0.0014 23.4 6.8 75 10-99 157-231 (271)
407 PRK13856 two-component respons 55.9 71 0.0015 23.2 6.9 53 13-76 3-55 (241)
408 PF02951 GSH-S_N: Prokaryotic 55.4 8.2 0.00018 26.4 1.6 34 66-100 78-114 (119)
409 PRK08269 3-hydroxybutyryl-CoA 55.3 53 0.0012 25.9 6.4 81 5-98 7-113 (314)
410 PRK07109 short chain dehydroge 55.2 1E+02 0.0022 24.2 9.2 60 8-75 29-94 (334)
411 PRK13837 two-component VirA-li 55.2 1.6E+02 0.0034 26.4 10.0 79 11-98 697-775 (828)
412 TIGR00571 dam DNA adenine meth 55.1 31 0.00066 26.5 4.9 28 39-76 155-182 (266)
413 COG3947 Response regulator con 54.8 78 0.0017 25.5 7.1 74 13-97 2-77 (361)
414 PRK10161 transcriptional regul 54.5 51 0.0011 23.6 5.9 54 12-76 3-56 (229)
415 PRK11091 aerobic respiration c 54.2 53 0.0011 28.8 6.8 56 11-77 525-580 (779)
416 PRK14974 cell division protein 54.2 1.1E+02 0.0025 24.5 8.5 83 11-102 168-263 (336)
417 PRK09935 transcriptional regul 54.0 72 0.0016 22.1 9.4 68 12-88 4-73 (210)
418 PRK09836 DNA-binding transcrip 53.9 78 0.0017 22.5 9.9 53 13-76 2-54 (227)
419 PRK12490 6-phosphogluconate de 53.8 61 0.0013 25.2 6.5 25 4-28 16-40 (299)
420 TIGR02154 PhoB phosphate regul 53.8 68 0.0015 22.5 6.4 54 12-76 3-56 (226)
421 PF08532 Glyco_hydro_42M: Beta 53.8 39 0.00084 24.8 5.1 53 30-99 38-90 (207)
422 PRK00771 signal recognition pa 53.8 86 0.0019 26.2 7.6 84 10-101 122-215 (437)
423 PRK10841 hybrid sensory kinase 53.7 1.5E+02 0.0033 27.0 9.8 55 12-77 802-856 (924)
424 PRK15182 Vi polysaccharide bio 53.6 67 0.0014 26.6 6.9 25 3-28 21-45 (425)
425 cd08230 glucose_DH Glucose deh 53.1 60 0.0013 25.4 6.5 72 11-101 196-270 (355)
426 smart00448 REC cheY-homologous 53.0 27 0.00059 17.0 5.7 51 13-74 2-52 (55)
427 PRK11173 two-component respons 53.0 85 0.0018 22.7 9.7 75 12-98 4-80 (237)
428 PRK10046 dpiA two-component re 52.9 87 0.0019 22.8 9.7 77 12-98 5-84 (225)
429 COG5459 Predicted rRNA methyla 52.8 14 0.00029 30.5 2.7 78 13-98 140-223 (484)
430 COG4121 Uncharacterized conser 52.7 13 0.00027 28.9 2.4 55 38-98 146-206 (252)
431 TIGR02818 adh_III_F_hyde S-(hy 52.6 79 0.0017 25.0 7.1 75 11-100 209-287 (368)
432 COG3706 PleD Response regulato 52.5 58 0.0013 27.3 6.4 60 10-80 131-190 (435)
433 TIGR00518 alaDH alanine dehydr 52.4 46 0.001 26.9 5.7 73 11-98 190-265 (370)
434 PF03141 Methyltransf_29: Puta 52.4 8.3 0.00018 32.7 1.5 35 66-100 427-467 (506)
435 PRK11107 hybrid sensory histid 52.2 63 0.0014 28.7 7.0 55 12-77 668-722 (919)
436 PRK09468 ompR osmolarity respo 52.1 87 0.0019 22.5 9.8 55 11-76 5-59 (239)
437 TIGR02822 adh_fam_2 zinc-bindi 52.1 51 0.0011 25.7 5.9 67 11-101 189-255 (329)
438 PRK15057 UDP-glucose 6-dehydro 51.8 95 0.0021 25.3 7.5 19 11-29 22-40 (388)
439 TIGR00561 pntA NAD(P) transhyd 51.8 37 0.00081 29.0 5.2 79 10-97 186-281 (511)
440 PRK08655 prephenate dehydrogen 51.5 59 0.0013 26.9 6.4 15 10-24 23-37 (437)
441 cd05278 FDH_like Formaldehyde 51.2 72 0.0016 24.6 6.6 73 13-99 194-266 (347)
442 PF14258 DUF4350: Domain of un 51.0 23 0.0005 21.1 3.0 65 20-98 3-68 (70)
443 PRK10923 glnG nitrogen regulat 50.8 1.4E+02 0.003 24.5 10.1 66 12-88 4-71 (469)
444 COG5379 BtaA S-adenosylmethion 50.7 59 0.0013 26.3 5.8 72 16-101 291-367 (414)
445 PRK07063 short chain dehydroge 50.2 94 0.002 22.9 6.9 62 8-75 28-95 (260)
446 TIGR03499 FlhF flagellar biosy 50.2 24 0.00051 27.4 3.6 54 12-75 225-281 (282)
447 PRK11524 putative methyltransf 50.0 16 0.00035 28.3 2.7 29 6-34 225-253 (284)
448 PRK08507 prephenate dehydrogen 50.0 51 0.0011 25.2 5.4 16 13-28 27-42 (275)
449 PRK09599 6-phosphogluconate de 49.8 72 0.0016 24.7 6.3 25 4-28 16-40 (301)
450 PRK09590 celB cellobiose phosp 49.7 74 0.0016 21.0 5.7 60 22-94 16-75 (104)
451 PRK10818 cell division inhibit 49.5 37 0.0008 25.6 4.6 18 5-22 25-42 (270)
452 KOG4058 Uncharacterized conser 49.5 38 0.00083 24.6 4.2 82 5-98 88-170 (199)
453 PRK12555 chemotaxis-specific m 49.0 1.3E+02 0.0028 23.6 9.1 76 13-99 2-80 (337)
454 KOG1099 SAM-dependent methyltr 48.9 40 0.00087 26.2 4.5 67 12-98 75-161 (294)
455 cd08296 CAD_like Cinnamyl alco 48.6 70 0.0015 24.7 6.1 71 11-98 187-257 (333)
456 PRK05854 short chain dehydroge 48.4 91 0.002 24.2 6.7 65 7-74 34-101 (313)
457 PRK10955 DNA-binding transcrip 48.4 96 0.0021 22.0 9.1 53 12-76 2-54 (232)
458 PRK06129 3-hydroxyacyl-CoA deh 48.2 1.2E+02 0.0027 23.5 7.5 27 4-30 18-44 (308)
459 PF07669 Eco57I: Eco57I restri 48.1 31 0.00066 22.6 3.5 29 66-96 2-47 (106)
460 PRK11889 flhF flagellar biosyn 47.9 1.2E+02 0.0026 25.5 7.4 60 10-77 268-331 (436)
461 KOG2352 Predicted spermine/spe 47.8 38 0.00082 28.7 4.6 74 13-98 73-159 (482)
462 cd08265 Zn_ADH3 Alcohol dehydr 47.7 79 0.0017 25.2 6.4 76 11-99 227-306 (384)
463 TIGR02819 fdhA_non_GSH formald 47.5 1.1E+02 0.0023 24.8 7.2 79 11-101 209-300 (393)
464 cd08277 liver_alcohol_DH_like 47.0 1.3E+02 0.0027 23.8 7.5 75 11-100 208-286 (365)
465 PLN02335 anthranilate synthase 46.8 94 0.002 23.2 6.3 60 4-74 11-70 (222)
466 PRK10816 DNA-binding transcrip 46.8 1E+02 0.0022 21.8 9.8 53 13-76 2-54 (223)
467 PRK09483 response regulator; P 46.4 1E+02 0.0022 21.6 8.8 66 12-87 2-70 (217)
468 PF02737 3HCDH_N: 3-hydroxyacy 46.3 19 0.00042 25.9 2.5 83 4-101 15-115 (180)
469 PRK05650 short chain dehydroge 46.3 1.1E+02 0.0023 22.9 6.6 59 8-74 21-85 (270)
470 TIGR00692 tdh L-threonine 3-de 46.2 1.2E+02 0.0026 23.5 7.1 75 11-99 185-260 (340)
471 PRK07102 short chain dehydroge 45.8 56 0.0012 23.9 5.0 61 8-74 22-84 (243)
472 TIGR01968 minD_bact septum sit 45.7 40 0.00086 25.0 4.2 18 5-22 24-41 (261)
473 PRK08340 glucose-1-dehydrogena 45.4 1.1E+02 0.0023 22.7 6.5 58 8-74 21-84 (259)
474 PF05063 MT-A70: MT-A70 ; Int 45.4 21 0.00045 25.6 2.5 9 67-75 1-9 (176)
475 PRK10336 DNA-binding transcrip 45.3 1E+02 0.0023 21.5 9.7 65 13-88 2-68 (219)
476 cd03115 SRP The signal recogni 45.3 1E+02 0.0022 21.4 9.4 36 66-101 82-122 (173)
477 PRK06172 short chain dehydroge 45.3 1.1E+02 0.0025 22.3 6.6 59 8-74 28-92 (253)
478 PF00875 DNA_photolyase: DNA p 45.2 98 0.0021 21.5 6.0 65 24-97 55-120 (165)
479 PLN02256 arogenate dehydrogena 45.0 1.1E+02 0.0025 24.0 6.8 30 66-95 92-122 (304)
480 cd03143 A4_beta-galactosidase_ 44.7 27 0.00058 24.1 2.9 34 66-99 53-86 (154)
481 PRK08229 2-dehydropantoate 2-r 44.7 22 0.00049 27.8 2.8 32 66-97 73-104 (341)
482 PRK06194 hypothetical protein; 44.7 1E+02 0.0022 23.1 6.4 64 7-75 26-92 (287)
483 cd08301 alcohol_DH_plants Plan 44.3 1.3E+02 0.0029 23.6 7.2 76 11-101 211-290 (369)
484 PRK08945 putative oxoacyl-(acy 44.2 1E+02 0.0022 22.6 6.1 60 8-74 33-100 (247)
485 PRK10669 putative cation:proto 43.8 91 0.002 26.5 6.5 73 10-99 439-514 (558)
486 COG1004 Ugd Predicted UDP-gluc 43.3 1.7E+02 0.0037 24.4 7.6 81 8-102 20-122 (414)
487 cd08261 Zn_ADH7 Alcohol dehydr 43.2 1.3E+02 0.0027 23.2 6.8 74 11-98 183-256 (337)
488 COG4798 Predicted methyltransf 43.2 25 0.00054 26.6 2.6 27 80-106 146-173 (238)
489 cd05286 QOR2 Quinone oxidoredu 42.8 1.2E+02 0.0026 22.5 6.4 73 11-98 161-233 (320)
490 TIGR01005 eps_transp_fam exopo 42.7 1.3E+02 0.0027 26.7 7.4 21 4-24 568-588 (754)
491 PRK10643 DNA-binding transcrip 42.1 1.2E+02 0.0026 21.2 9.9 53 13-76 2-54 (222)
492 PRK13558 bacterio-opsin activa 42.0 2.2E+02 0.0049 24.4 8.9 65 12-87 8-74 (665)
493 PRK03659 glutathione-regulated 41.8 86 0.0019 27.1 6.1 73 10-98 422-496 (601)
494 PRK10701 DNA-binding transcrip 41.6 1.3E+02 0.0029 21.6 9.7 74 13-98 3-78 (240)
495 PF13602 ADH_zinc_N_2: Zinc-bi 41.3 14 0.0003 24.3 1.0 33 66-100 19-51 (127)
496 TIGR01915 npdG NADPH-dependent 41.1 1.3E+02 0.0029 22.1 6.3 75 8-99 21-99 (219)
497 TIGR00363 lipoprotein, YaeC fa 41.0 1.2E+02 0.0025 23.4 6.1 56 12-75 117-191 (258)
498 PRK10365 transcriptional regul 41.0 1.9E+02 0.0042 23.3 10.0 55 11-76 5-59 (441)
499 PF01558 POR: Pyruvate ferredo 40.8 53 0.0011 23.2 4.0 35 66-105 57-91 (173)
500 COG0287 TyrA Prephenate dehydr 40.8 74 0.0016 24.9 5.1 25 4-28 19-45 (279)
No 1
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.92 E-value=3.2e-24 Score=159.80 Aligned_cols=120 Identities=29% Similarity=0.499 Sum_probs=105.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
.++|+++|++++..+.|+++++++|+.++|+++.||+.+.++++..+.. .+ +||+||+|+++..|..+++.+.++|
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~-~~---~fD~VFiDa~K~~y~~y~~~~~~ll 145 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGE-EG---QFDFVFIDADKRNYLEYFEKALPLL 145 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTT-TT---SEEEEEEESTGGGHHHHHHHHHHHE
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccC-CC---ceeEEEEcccccchhhHHHHHhhhc
Confidence 4689999999999999999999999999999999999999988754311 24 7999999999999999999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
++||+|++||++|+|.++.+... ...+.+|++||+++.+||+|+
T Consensus 146 ~~ggvii~DN~l~~G~V~~~~~~-----~~~~~~ir~f~~~i~~d~~~~ 189 (205)
T PF01596_consen 146 RPGGVIIADNVLWRGSVADPDDE-----DPKTVAIREFNEYIANDPRFE 189 (205)
T ss_dssp EEEEEEEEETTTGGGGGGSTTGG-----SHHHHHHHHHHHHHHH-TTEE
T ss_pred cCCeEEEEccccccceecCccch-----hhhHHHHHHHHHHHHhCCCee
Confidence 99999999999999999999543 456677999999999999974
No 2
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.91 E-value=1.9e-23 Score=156.52 Aligned_cols=126 Identities=26% Similarity=0.397 Sum_probs=111.9
Q ss_pred Cchhhhhhhc-------ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 3 FNLESTFFIY-------FIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 3 ~~~~~~~~~~-------~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
+..+||.+++ ++|+||+++++.+.|++|+++.|+.++++++. +|+.+.+.+.. .+ +||+||+|+
T Consensus 69 ~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~-----~~---~fDliFIDa 140 (219)
T COG4122 69 AIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLL-----DG---SFDLVFIDA 140 (219)
T ss_pred ccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhcc-----CC---CccEEEEeC
Confidence 4556666653 69999999999999999999999999999999 69999987622 46 999999999
Q ss_pred CCcchHHHHHHHhhcccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253 75 HKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 75 ~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
++..|+.+++.+.++|+|||++++||++++|.+..+.. +..+..++++++|++++.++|+++
T Consensus 141 dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 202 (219)
T COG4122 141 DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDARTQVRGVRDFNDYLLEDPRYD 202 (219)
T ss_pred ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHHHHHHHHHHHHHHhhCcCce
Confidence 99999999999999999999999999999999999974 345788889999999999999874
No 3
>PLN02476 O-methyltransferase
Probab=99.90 E-value=6.5e-23 Score=158.64 Aligned_cols=119 Identities=28% Similarity=0.444 Sum_probs=105.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|+++|.++++++.|++|++++|+.++++++.||+.+.|+++..+.. .+ +||+||+|+++..|..+++.+.++|+
T Consensus 144 G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~-~~---~FD~VFIDa~K~~Y~~y~e~~l~lL~ 219 (278)
T PLN02476 144 GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGE-GS---SYDFAFVDADKRMYQDYFELLLQLVR 219 (278)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccc-CC---CCCEEEECCCHHHHHHHHHHHHHhcC
Confidence 469999999999999999999999998999999999999987632110 24 89999999999999999999999999
Q ss_pred CCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253 92 VGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 92 ~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
+||+|++||++|+|.+..+... +..+++|++||+++.+||+|+
T Consensus 220 ~GGvIV~DNvL~~G~V~d~~~~-----d~~t~~ir~fn~~v~~d~~~~ 262 (278)
T PLN02476 220 VGGVIVMDNVLWHGRVADPLVN-----DAKTISIRNFNKKLMDDKRVS 262 (278)
T ss_pred CCcEEEEecCccCCcccCcccC-----CHHHHHHHHHHHHHhhCCCEE
Confidence 9999999999999999988643 345789999999999999974
No 4
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.89 E-value=1.5e-22 Score=154.57 Aligned_cols=126 Identities=44% Similarity=0.668 Sum_probs=106.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|.+++..+.|+++++++|+.++|+++.|++.+.|+++.......+ +||+||+|+++..|..+++.+.++|
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~---~fD~iFiDadK~~Y~~y~~~~l~ll 180 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG---TFDFIFVDADKDNYINYHKRLIDLV 180 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC---cccEEEecCCHHHhHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999999988642100014 8999999999999999999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhh-hchHHHHHHHHHHhhCCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILR-STRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 139 (139)
++||+|++||++|+|.+..+....+++.. ...++|++||+.+.+||+|+
T Consensus 181 ~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~ 230 (247)
T PLN02589 181 KVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIE 230 (247)
T ss_pred CCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999888533222222 23457999999999999974
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.89 E-value=1.5e-22 Score=153.60 Aligned_cols=125 Identities=49% Similarity=0.741 Sum_probs=109.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|+++++++.|++|++++|+.++++++.+|+.+.++.+..+. +.+ +||+||+|+++..|..+++.+.++|
T Consensus 93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~-~~~---~fD~VfiDa~k~~y~~~~~~~~~ll 168 (234)
T PLN02781 93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND-PKP---EFDFAFVDADKPNYVHFHEQLLKLV 168 (234)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC-CCC---CCCEEEECCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999999998899999999999987763210 024 8999999999999999999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
+|||+++++|++|+|.+..+....+...+..+++|++||+++.+||+|+
T Consensus 169 ~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~ 217 (234)
T PLN02781 169 KVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE 217 (234)
T ss_pred CCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence 9999999999999999999875444545567899999999999999874
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=8.2e-20 Score=136.58 Aligned_cols=121 Identities=40% Similarity=0.636 Sum_probs=107.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++|++++..+++.+..+..|..++|++++|++.+.|+++..++. .+ +||++|+|+++.+|..+++.+.++|
T Consensus 98 dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~-~~---tfDfaFvDadK~nY~~y~e~~l~Ll 173 (237)
T KOG1663|consen 98 DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGE-SG---TFDFAFVDADKDNYSNYYERLLRLL 173 (237)
T ss_pred CceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCC-CC---ceeEEEEccchHHHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999999999998866532 35 8999999999999999999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhhhchHHHH---HHHHHHhhCCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNW---NLDKLFASSGPIR 139 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 139 (139)
++||+|++||++|+|.++.|.... ...++.++ +||..+..|||+.
T Consensus 174 r~GGvi~~DNvl~~G~v~~p~~~~----~~~~~~~r~~~~~n~~l~~D~rV~ 221 (237)
T KOG1663|consen 174 RVGGVIVVDNVLWPGVVADPDVNT----PVRGRSIREALNLNKKLARDPRVY 221 (237)
T ss_pred ccccEEEEeccccCCcccCcccCC----CcchhhhhhhhhhhhHhccCccee
Confidence 999999999999999888775432 23677777 9999999999974
No 7
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.52 E-value=4e-14 Score=114.26 Aligned_cols=95 Identities=13% Similarity=0.201 Sum_probs=81.7
Q ss_pred Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253 3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---- 76 (139)
Q Consensus 3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---- 76 (139)
|++.+|..++ +||+||.|..++++|++|++.+|+ .+++.++++|++++++....+ .. +||+|++||+.
T Consensus 231 fSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~---g~---~fDlIilDPPsF~r~ 304 (393)
T COG1092 231 FSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR---GE---KFDLIILDPPSFARS 304 (393)
T ss_pred HHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc---CC---cccEEEECCcccccC
Confidence 7889999888 999999999999999999999999 467999999999999887543 45 89999999963
Q ss_pred --------cchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 77 --------DNYRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 77 --------~~~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
.+|.++...+.++|+|||++++.+...
T Consensus 305 k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 305 KKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred cccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 246677888889999999999865544
No 8
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.42 E-value=9.4e-13 Score=102.58 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=71.7
Q ss_pred Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253 3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---- 76 (139)
Q Consensus 3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---- 76 (139)
|+++++..++ +|++||.|..++++|++|++.+|+. ++++++++|+++++.++.. .. +||+|++||+.
T Consensus 137 fsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~----~~---~fD~IIlDPPsF~k~ 209 (286)
T PF10672_consen 137 FSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK----GG---RFDLIILDPPSFAKS 209 (286)
T ss_dssp HHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH----TT----EEEEEE--SSEESS
T ss_pred HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc----CC---CCCEEEECCCCCCCC
Confidence 7788888877 6999999999999999999999985 6899999999999887543 36 89999999963
Q ss_pred -----cchHHHHHHHhhcccCCeEEEEe
Q 044253 77 -----DNYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 77 -----~~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
.+|.+++..+.++|+|||.+++.
T Consensus 210 ~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 210 KFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp TCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 24677888888999999998753
No 9
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.35 E-value=5.3e-12 Score=92.65 Aligned_cols=94 Identities=22% Similarity=0.282 Sum_probs=72.8
Q ss_pred chhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---h
Q 044253 4 NLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---Y 79 (139)
Q Consensus 4 ~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---~ 79 (139)
|+++..++ .+|++||.|++++...++|++..+..++++++++|+...+.+.... .. +||+||+||++.. +
T Consensus 57 GlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~---~~---~fDiIflDPPY~~~~~~ 130 (183)
T PF03602_consen 57 GLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKK---GE---KFDIIFLDPPYAKGLYY 130 (183)
T ss_dssp HHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHC---TS----EEEEEE--STTSCHHH
T ss_pred HHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhccc---CC---CceEEEECCCcccchHH
Confidence 56666665 5899999999999999999999999888999999999998766322 36 8999999998653 2
Q ss_pred HHHHHHHh--hcccCCeEEEEeCCCC
Q 044253 80 RNYRETLM--TLFKVGGIVIYDNTLW 103 (139)
Q Consensus 80 ~~~~~~~~--~lL~~gG~ii~~~~~~ 103 (139)
...++.+. .+|+++|+++++...-
T Consensus 131 ~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 131 EELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 55777776 6999999999986544
No 10
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.34 E-value=5.9e-12 Score=102.18 Aligned_cols=91 Identities=19% Similarity=0.281 Sum_probs=73.5
Q ss_pred Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253 3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---- 76 (139)
Q Consensus 3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---- 76 (139)
|+++++..++ +|++||+|+.+++.|++|++.+|+. ++++++++|+++++..+... .. +||+|++||+.
T Consensus 234 ~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~~---~fDlVilDPP~f~~~ 307 (396)
T PRK15128 234 FAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GE---KFDVIVMDPPKFVEN 307 (396)
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---CC---CCCEEEECCCCCCCC
Confidence 5566555544 8999999999999999999999985 58999999999998765321 35 89999999874
Q ss_pred --------cchHHHHHHHhhcccCCeEEEEe
Q 044253 77 --------DNYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 77 --------~~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
..|..++..+.++|++||+++.-
T Consensus 308 k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 308 KSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 13566677788999999999863
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.30 E-value=7.9e-12 Score=83.42 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=67.8
Q ss_pred hhhhh--hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCcc---
Q 044253 5 LESTF--FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKDN--- 78 (139)
Q Consensus 5 ~~~~~--~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~~--- 78 (139)
++.+. .+.+|++||+|+++++.|++++...+..++++++++|+ ...... .+ +||+|++.. ....
T Consensus 17 ~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~---~~D~v~~~~~~~~~~~~ 86 (112)
T PF12847_consen 17 IALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LE---PFDLVICSGFTLHFLLP 86 (112)
T ss_dssp HHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SS---CEEEEEECSGSGGGCCH
T ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CC---CCCEEEECCCccccccc
Confidence 34444 78899999999999999999998888888999999999 332222 35 899999988 3222
Q ss_pred ---hHHHHHHHhhcccCCeEEEEe
Q 044253 79 ---YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ---~~~~~~~~~~lL~~gG~ii~~ 99 (139)
...+++.+.+.|+|||+++++
T Consensus 87 ~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 87 LDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 235688899999999999986
No 12
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.26 E-value=2.3e-11 Score=81.87 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=68.9
Q ss_pred hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----
Q 044253 5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----- 78 (139)
Q Consensus 5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----- 78 (139)
+..+..+ .+++++|+|+.+++.|++|+...+..++++++++|+.+....+. .. +||+|+++++...
T Consensus 16 ~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~-----~~---~~D~Iv~npP~~~~~~~~ 87 (117)
T PF13659_consen 16 LAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP-----DG---KFDLIVTNPPYGPRSGDK 87 (117)
T ss_dssp HHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-----TT----EEEEEE--STTSBTT--
T ss_pred HHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-----Cc---eeEEEEECCCCccccccc
Confidence 4444455 89999999999999999999999998899999999998864442 35 8999999986432
Q ss_pred ------hHHHHHHHhhcccCCeEEEE
Q 044253 79 ------YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ------~~~~~~~~~~lL~~gG~ii~ 98 (139)
+..+++.+.++|++||.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 88 AALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp --GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 35678899999999999875
No 13
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.24 E-value=3.2e-11 Score=104.09 Aligned_cols=91 Identities=15% Similarity=0.156 Sum_probs=75.9
Q ss_pred Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---
Q 044253 3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--- 77 (139)
Q Consensus 3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--- 77 (139)
|+++++..++ +|++||+|+.+++.|++|++.+|+. ++++++++|+.+++... .. +||+|++||+.-
T Consensus 552 ~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------~~---~fDlIilDPP~f~~~ 622 (702)
T PRK11783 552 ASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA------RE---QFDLIFIDPPTFSNS 622 (702)
T ss_pred HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc------CC---CcCEEEECCCCCCCC
Confidence 6777787665 6999999999999999999999996 68999999999987654 35 899999998731
Q ss_pred -----------chHHHHHHHhhcccCCeEEEEeCCC
Q 044253 78 -----------NYRNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 78 -----------~~~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
.|..++..+.++|+|||++++....
T Consensus 623 ~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 623 KRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3556778888999999999886543
No 14
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.23 E-value=4.5e-11 Score=87.45 Aligned_cols=88 Identities=20% Similarity=0.141 Sum_probs=77.2
Q ss_pred hhhh--hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253 5 LEST--FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY 82 (139)
Q Consensus 5 ~~~~--~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~ 82 (139)
++++ -...+|+++|.++++++..++|.+++|+ ++++++.|++.+.|+.+ . +||.||+.+. ..+..+
T Consensus 50 iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~-------~---~~daiFIGGg-~~i~~i 117 (187)
T COG2242 50 IEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDL-------P---SPDAIFIGGG-GNIEEI 117 (187)
T ss_pred HHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCC-------C---CCCEEEECCC-CCHHHH
Confidence 4455 4467999999999999999999999996 79999999999998753 4 6999999998 789999
Q ss_pred HHHHhhcccCCeEEEEeCCCCC
Q 044253 83 RETLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~~~~ 104 (139)
++.+...|++||.+|++-+...
T Consensus 118 le~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 118 LEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred HHHHHHHcCcCCeEEEEeecHH
Confidence 9999999999999999766653
No 15
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.22 E-value=1.1e-10 Score=86.11 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=74.3
Q ss_pred Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--ch
Q 044253 3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NY 79 (139)
Q Consensus 3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~ 79 (139)
|+++++.+++ +|++||.|+++++.+++|++.+++.++++++++|+.+.+..+... .. .||+||+||+.. .+
T Consensus 63 lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~---~~---~~dvv~~DPPy~~~~~ 136 (189)
T TIGR00095 63 LGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK---PT---FDNVIYLDPPFFNGAL 136 (189)
T ss_pred HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc---CC---CceEEEECcCCCCCcH
Confidence 5677877765 899999999999999999999999778999999998887654211 23 589999999764 34
Q ss_pred HHHHHHHh--hcccCCeEEEEeCCC
Q 044253 80 RNYRETLM--TLFKVGGIVIYDNTL 102 (139)
Q Consensus 80 ~~~~~~~~--~lL~~gG~ii~~~~~ 102 (139)
...++.+. .+|+++|+++++...
T Consensus 137 ~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 137 QALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred HHHHHHHHHCCCCCCCeEEEEEecC
Confidence 45555554 489999999997654
No 16
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.20 E-value=1.2e-10 Score=85.90 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=71.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|+++++++.|++|++.+|+.++++++++|+.+.++.. .. +||+||+++....+..+++.+.+.|
T Consensus 65 ~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~---~~D~V~~~~~~~~~~~~l~~~~~~L 135 (198)
T PRK00377 65 TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NE---KFDRIFIGGGSEKLKEIISASWEII 135 (198)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CC---CCCEEEECCCcccHHHHHHHHHHHc
Confidence 36899999999999999999999997678999999998876543 35 8999999876667788999999999
Q ss_pred cCCeEEEEeCC
Q 044253 91 KVGGIVIYDNT 101 (139)
Q Consensus 91 ~~gG~ii~~~~ 101 (139)
+|||.++++..
T Consensus 136 kpgG~lv~~~~ 146 (198)
T PRK00377 136 KKGGRIVIDAI 146 (198)
T ss_pred CCCcEEEEEee
Confidence 99999998554
No 17
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.13 E-value=4.4e-10 Score=82.46 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=72.4
Q ss_pred chhhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chH
Q 044253 4 NLESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYR 80 (139)
Q Consensus 4 ~~~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~ 80 (139)
|+++..+ ..++++||.|.+++.++++|++..+...+.+++.+|+..+|++... .. +||+||+||+.. .+.
T Consensus 58 GlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~----~~---~FDlVflDPPy~~~l~~ 130 (187)
T COG0742 58 GLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT----RE---PFDLVFLDPPYAKGLLD 130 (187)
T ss_pred HHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC----CC---cccEEEeCCCCccchhh
Confidence 4555555 5689999999999999999999999888999999999988877631 13 499999999865 222
Q ss_pred HHHHHHh----hcccCCeEEEEeCCCCC
Q 044253 81 NYRETLM----TLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 81 ~~~~~~~----~lL~~gG~ii~~~~~~~ 104 (139)
.....+. .+|+++|.++++.-...
T Consensus 131 ~~~~~~~~~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 131 KELALLLLEENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred HHHHHHHHHhcCCcCCCcEEEEEeCCCc
Confidence 1222222 58999999999865443
No 18
>PRK04457 spermidine synthase; Provisional
Probab=99.10 E-value=4.2e-10 Score=86.76 Aligned_cols=81 Identities=10% Similarity=0.099 Sum_probs=67.5
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRNY 82 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~~ 82 (139)
...++++||+|+++++.|++++...+..++++++++|+.+++... .. +||+|++|.... ....+
T Consensus 89 p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------~~---~yD~I~~D~~~~~~~~~~l~t~ef 159 (262)
T PRK04457 89 PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------RH---STDVILVDGFDGEGIIDALCTQPF 159 (262)
T ss_pred CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------CC---CCCEEEEeCCCCCCCccccCcHHH
Confidence 356899999999999999999876665578999999999998754 35 899999996321 12678
Q ss_pred HHHHhhcccCCeEEEEe
Q 044253 83 RETLMTLFKVGGIVIYD 99 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~ 99 (139)
++.+.+.|+|||+++++
T Consensus 160 l~~~~~~L~pgGvlvin 176 (262)
T PRK04457 160 FDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHHHHHhcCCCcEEEEE
Confidence 99999999999999985
No 19
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.09 E-value=2.4e-10 Score=87.27 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=72.5
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---- 77 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---- 77 (139)
|+.|++....+++++||+++++.+.|++|++.+++.+|++++++|+..+.+... .. +||+|+++|+.-
T Consensus 59 ~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-----~~---~fD~Ii~NPPyf~~~~ 130 (248)
T COG4123 59 GLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-----FA---SFDLIICNPPYFKQGS 130 (248)
T ss_pred HHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-----cc---ccCEEEeCCCCCCCcc
Confidence 344444444589999999999999999999999999999999999999876542 24 699999998531
Q ss_pred -----------------chHHHHHHHhhcccCCeEEEE
Q 044253 78 -----------------NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 78 -----------------~~~~~~~~~~~lL~~gG~ii~ 98 (139)
...+++..+.++|++||.+.+
T Consensus 131 ~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 131 RLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred ccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 135678888899999999975
No 20
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.07 E-value=4.6e-10 Score=83.49 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=66.6
Q ss_pred CCchhhhh--hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253 2 PFNLESTF--FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY 79 (139)
Q Consensus 2 ~~~~~~~~--~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~ 79 (139)
||+|+.|. ...+|+++|++|.+++.+++|++.+++.++++++++|+.++++ .. .||.|+++.+...
T Consensus 114 ~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~---~~drvim~lp~~~- 181 (200)
T PF02475_consen 114 PFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EG---KFDRVIMNLPESS- 181 (200)
T ss_dssp TTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT----EEEEEE--TSSG-
T ss_pred HHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------cc---ccCEEEECChHHH-
Confidence 89999998 6778999999999999999999999999999999999999875 25 8999999987543
Q ss_pred HHHHHHHhhcccCCeEEEE
Q 044253 80 RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~ 98 (139)
..+++.+..++++||++.+
T Consensus 182 ~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 182 LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp GGGHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCcEEEC
Confidence 3588889999999999863
No 21
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.06 E-value=1.2e-09 Score=81.28 Aligned_cols=90 Identities=12% Similarity=0.156 Sum_probs=68.8
Q ss_pred Cchh-hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-c-ch
Q 044253 3 FNLE-STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-D-NY 79 (139)
Q Consensus 3 ~~~~-~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~-~~ 79 (139)
|+++ .++...+|++||+++++++.|++|++.+++. +++++++|+.+.+... .. +||+||+||+. . .+
T Consensus 67 l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~------~~---~fDlV~~DPPy~~g~~ 136 (199)
T PRK10909 67 LGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP------GT---PHNVVFVDPPFRKGLL 136 (199)
T ss_pred HHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc------CC---CceEEEECCCCCCChH
Confidence 3454 3344579999999999999999999999974 7999999998876432 35 79999999983 2 23
Q ss_pred HHHHHHHhh--cccCCeEEEEeCCC
Q 044253 80 RNYRETLMT--LFKVGGIVIYDNTL 102 (139)
Q Consensus 80 ~~~~~~~~~--lL~~gG~ii~~~~~ 102 (139)
...++.+.. +|+++|+++++...
T Consensus 137 ~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 137 EETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHHHHHHCCCcCCCcEEEEEecC
Confidence 445555554 58999999987554
No 22
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=8.4e-10 Score=87.81 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=80.5
Q ss_pred CCchhhhhhhcc-eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253 2 PFNLESTFFIYF-IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR 80 (139)
Q Consensus 2 ~~~~~~~~~~~~-v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~ 80 (139)
||+++.|..+.. |+++|+||.++..+++|++.+++.++++.++||+.+.+.++ . .+|.|++..+.. -.
T Consensus 201 pfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~---~aDrIim~~p~~-a~ 269 (341)
T COG2520 201 PFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-------G---VADRIIMGLPKS-AH 269 (341)
T ss_pred cchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-------c---cCCEEEeCCCCc-ch
Confidence 899999999877 99999999999999999999999888999999999997653 4 799999987653 34
Q ss_pred HHHHHHhhcccCCeEEEEeCCCCCc
Q 044253 81 NYRETLMTLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~~~~~ 105 (139)
.++..+...+++||++.+.......
T Consensus 270 ~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 270 EFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred hhHHHHHHHhhcCcEEEEEeccchh
Confidence 5788888999999999986665543
No 23
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.03 E-value=5.5e-10 Score=87.04 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=65.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------- 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------- 77 (139)
..+|+++|+|+++++.|++|++.+|+.++++++++|+.+.++ .. +||+|+++|++.
T Consensus 145 ~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--------~~---~fD~Iv~NPPy~~~~~~~~l~~~~~ 213 (284)
T TIGR03533 145 EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--------GR---KYDLIVSNPPYVDAEDMADLPAEYH 213 (284)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--------CC---CccEEEECCCCCCccchhhCCHhhh
Confidence 568999999999999999999999997789999999876532 35 799999997531
Q ss_pred ---------------chHHHHHHHhhcccCCeEEEEeCC
Q 044253 78 ---------------NYRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 78 ---------------~~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.+..++..+.+.|++||+++++..
T Consensus 214 ~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 214 HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 124456677789999999998644
No 24
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.03 E-value=1.1e-09 Score=80.22 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=65.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|.|+++++.+++++++.++. +++++++|+.+. . . .. +||+|++++ ..++..+++.+.++|
T Consensus 66 ~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~-~-~------~~---~fD~I~s~~-~~~~~~~~~~~~~~L 132 (181)
T TIGR00138 66 ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDF-Q-H------EE---QFDVITSRA-LASLNVLLELTLNLL 132 (181)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhc-c-c------cC---CccEEEehh-hhCHHHHHHHHHHhc
Confidence 468999999999999999999999984 699999999875 2 1 35 899999987 456778888899999
Q ss_pred cCCeEEEEe
Q 044253 91 KVGGIVIYD 99 (139)
Q Consensus 91 ~~gG~ii~~ 99 (139)
+|||.+++.
T Consensus 133 kpgG~lvi~ 141 (181)
T TIGR00138 133 KVGGYFLAY 141 (181)
T ss_pred CCCCEEEEE
Confidence 999999975
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=1.4e-09 Score=83.07 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=71.0
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchH
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYR 80 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~ 80 (139)
++..+..+.+|+++|+|+++++.|++++...|+.++++++++|+.+..... .+ +||+|++.... .+..
T Consensus 59 a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~---~fD~V~~~~vl~~~~~~~ 129 (255)
T PRK11036 59 AIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ET---PVDLILFHAVLEWVADPK 129 (255)
T ss_pred HHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CC---CCCEEEehhHHHhhCCHH
Confidence 345566678999999999999999999999998788999999998864322 45 89999987532 3456
Q ss_pred HHHHHHhhcccCCeEEEEe
Q 044253 81 NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~ 99 (139)
.+++.+.++|+|||++++-
T Consensus 130 ~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 130 SVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHHHHHHHcCCCeEEEEE
Confidence 7889999999999999763
No 26
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.02 E-value=1.4e-09 Score=73.37 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=67.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|+|+.+++.++++++..+.. +++++.+|+...+... .. +||+|+++.....+..+++.+.+.|
T Consensus 43 ~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~---~~D~v~~~~~~~~~~~~l~~~~~~L 112 (124)
T TIGR02469 43 NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS------LP---EPDRVFIGGSGGLLQEILEAIWRRL 112 (124)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh------cC---CCCEEEECCcchhHHHHHHHHHHHc
Confidence 468999999999999999999998875 6999999987544332 35 8999999876566778899999999
Q ss_pred cCCeEEEEeC
Q 044253 91 KVGGIVIYDN 100 (139)
Q Consensus 91 ~~gG~ii~~~ 100 (139)
+|||++++.-
T Consensus 113 k~gG~li~~~ 122 (124)
T TIGR02469 113 RPGGRIVLNA 122 (124)
T ss_pred CCCCEEEEEe
Confidence 9999999753
No 27
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.01 E-value=1.2e-09 Score=80.53 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=67.2
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
....+|+++|+|+++++.|+++++.+++.+ ++++++|+.+.. . .+ +||+|+++.. ..+..+++.+.+
T Consensus 67 ~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~-~-------~~---~fDlV~~~~~-~~~~~~l~~~~~ 133 (187)
T PRK00107 67 RPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFG-Q-------EE---KFDVVTSRAV-ASLSDLVELCLP 133 (187)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCC-C-------CC---CccEEEEccc-cCHHHHHHHHHH
Confidence 356799999999999999999999999854 999999998742 1 25 8999999863 467889999999
Q ss_pred cccCCeEEEEeC
Q 044253 89 LFKVGGIVIYDN 100 (139)
Q Consensus 89 lL~~gG~ii~~~ 100 (139)
+|+|||++++-.
T Consensus 134 ~LkpGG~lv~~~ 145 (187)
T PRK00107 134 LLKPGGRFLALK 145 (187)
T ss_pred hcCCCeEEEEEe
Confidence 999999998763
No 28
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.00 E-value=1.2e-09 Score=72.63 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=50.6
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHHHhhcc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRETLMTLF 90 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~~~~lL 90 (139)
+++++|..+. .+.+++++++.++.+++++++++..+.++.+. .. +||+|++|+++ ......++.+.++|
T Consensus 25 ~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~---~~dli~iDg~H~~~~~~~dl~~~~~~l 95 (106)
T PF13578_consen 25 KLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DG---PIDLIFIDGDHSYEAVLRDLENALPRL 95 (106)
T ss_dssp --EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H-----EEEEEEES---HHHHHHHHHHHGGGE
T ss_pred CEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CC---CEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 7999999997 45556666667887889999999999988774 26 89999999975 33456788888999
Q ss_pred cCCeEEEEeCC
Q 044253 91 KVGGIVIYDNT 101 (139)
Q Consensus 91 ~~gG~ii~~~~ 101 (139)
+|||+|+++|.
T Consensus 96 ~~ggviv~dD~ 106 (106)
T PF13578_consen 96 APGGVIVFDDY 106 (106)
T ss_dssp EEEEEEEEE--
T ss_pred CCCeEEEEeCc
Confidence 99999999874
No 29
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.99 E-value=1.6e-09 Score=85.32 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=65.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------- 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------- 77 (139)
..+|+++|+|+.+++.|++|++.+++.++++++++|+.+.++ .. +||+|+++|++-
T Consensus 157 ~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--------~~---~fDlIvsNPPyi~~~~~~~l~~~~~ 225 (307)
T PRK11805 157 DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--------GR---RYDLIVSNPPYVDAEDMADLPAEYR 225 (307)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--------CC---CccEEEECCCCCCccchhhcCHhhc
Confidence 568999999999999999999999987789999999876542 35 799999997531
Q ss_pred ---------------chHHHHHHHhhcccCCeEEEEeCC
Q 044253 78 ---------------NYRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 78 ---------------~~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.|..+++.+.++|+|||.++++..
T Consensus 226 ~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 226 HEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred cCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 124556777789999999998633
No 30
>PLN03075 nicotianamine synthase; Provisional
Probab=98.97 E-value=1.6e-09 Score=84.78 Aligned_cols=81 Identities=10% Similarity=0.195 Sum_probs=69.2
Q ss_pred hhcceeEEeCCccHHHHHHHHHHH-cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC----CCcchHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKK-VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA----HKDNYRNYRE 84 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~-~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~----~~~~~~~~~~ 84 (139)
..++++++|+|+++++.||++++. .|+.++++|+.+|+.+.... .. .||+||+++ ++..+..+++
T Consensus 148 p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-------l~---~FDlVF~~ALi~~dk~~k~~vL~ 217 (296)
T PLN03075 148 PTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-------LK---EYDVVFLAALVGMDKEEKVKVIE 217 (296)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-------cC---CcCEEEEecccccccccHHHHHH
Confidence 356799999999999999999964 88888999999999885322 25 899999996 3467888999
Q ss_pred HHhhcccCCeEEEEeC
Q 044253 85 TLMTLFKVGGIVIYDN 100 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~ 100 (139)
.+.+.|+|||++++..
T Consensus 218 ~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 218 HLGKHMAPGALLMLRS 233 (296)
T ss_pred HHHHhcCCCcEEEEec
Confidence 9999999999999875
No 31
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.94 E-value=4.2e-09 Score=76.88 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=65.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|+|+++++.|++|++.+++. +++++++|+... + .. +||+|+++.....+..+++.+.+.|
T Consensus 55 ~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~---~------~~---~~D~v~~~~~~~~~~~~l~~~~~~L 121 (187)
T PRK08287 55 SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE---L------PG---KADAIFIGGSGGNLTAIIDWSLAHL 121 (187)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh---c------Cc---CCCEEEECCCccCHHHHHHHHHHhc
Confidence 468999999999999999999998874 699999997532 2 35 7999999876566778889999999
Q ss_pred cCCeEEEEeCC
Q 044253 91 KVGGIVIYDNT 101 (139)
Q Consensus 91 ~~gG~ii~~~~ 101 (139)
+|||++++...
T Consensus 122 k~gG~lv~~~~ 132 (187)
T PRK08287 122 HPGGRLVLTFI 132 (187)
T ss_pred CCCeEEEEEEe
Confidence 99999998654
No 32
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.91 E-value=3.1e-09 Score=76.75 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=60.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------chHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------NYRNYR 83 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~~~~~~ 83 (139)
.+|+++|+|+.+++.+++|++.+++.+ ++++++|..+.++ .. +||+|+++|+.. ....++
T Consensus 56 ~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--------~~---~fD~Iv~NPP~~~~~~~~~~~~~~~i 123 (170)
T PF05175_consen 56 AKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--------DG---KFDLIVSNPPFHAGGDDGLDLLRDFI 123 (170)
T ss_dssp EEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--------TT---CEEEEEE---SBTTSHCHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--------cc---ceeEEEEccchhcccccchhhHHHHH
Confidence 359999999999999999999999976 9999999977543 25 899999998642 135677
Q ss_pred HHHhhcccCCeEEEE
Q 044253 84 ETLMTLFKVGGIVIY 98 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~ 98 (139)
+.+.++|++||.+++
T Consensus 124 ~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 124 EQARRYLKPGGRLFL 138 (170)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHhccCCCEEEE
Confidence 888899999999853
No 33
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=4.2e-09 Score=80.39 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=67.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|+++|+.++.++.|++|++.+|+.+++++..+|+.+... ++ .||.||+|-+ +++++++.+.+.|+
T Consensus 120 G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------~~---~vDav~LDmp--~PW~~le~~~~~Lk 186 (256)
T COG2519 120 GHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--------EE---DVDAVFLDLP--DPWNVLEHVSDALK 186 (256)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--------cc---ccCEEEEcCC--ChHHHHHHHHHHhC
Confidence 68999999999999999999999998889999999998753 35 8999999985 67889999999999
Q ss_pred CCeEEEE
Q 044253 92 VGGIVIY 98 (139)
Q Consensus 92 ~gG~ii~ 98 (139)
|||.+++
T Consensus 187 pgg~~~~ 193 (256)
T COG2519 187 PGGVVVV 193 (256)
T ss_pred CCcEEEE
Confidence 9999986
No 34
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.90 E-value=4.8e-09 Score=79.89 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=70.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
.++|+++|+|+.|++.|++.+...|..+ ++++++||... + +. +. +||+|.+.-. ..++...++++.
T Consensus 75 ~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f~-----D~---sFD~vt~~fglrnv~d~~~aL~E~~ 143 (238)
T COG2226 75 TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-FP-----DN---SFDAVTISFGLRNVTDIDKALKEMY 143 (238)
T ss_pred CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-CC-----CC---ccCEEEeeehhhcCCCHHHHHHHHH
Confidence 3799999999999999999999988865 99999999886 4 43 56 9999999763 346788999999
Q ss_pred hcccCCeEEEEeCCCCC
Q 044253 88 TLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~~ 104 (139)
+.|+|||.+++-+....
T Consensus 144 RVlKpgG~~~vle~~~p 160 (238)
T COG2226 144 RVLKPGGRLLVLEFSKP 160 (238)
T ss_pred HhhcCCeEEEEEEcCCC
Confidence 99999999988766553
No 35
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.90 E-value=1.2e-08 Score=75.04 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=67.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|+|+++++.+++|++..++ ++++++++|+.+.+..+ .. .+|.|+++.. .....+++.+.++|
T Consensus 64 ~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~------~~---~~d~v~~~~~-~~~~~~l~~~~~~L 132 (196)
T PRK07402 64 KGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQL------AP---APDRVCIEGG-RPIKEILQAVWQYL 132 (196)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhC------CC---CCCEEEEECC-cCHHHHHHHHHHhc
Confidence 47899999999999999999999998 47999999998765443 23 5789999875 34578899999999
Q ss_pred cCCeEEEEeCCCC
Q 044253 91 KVGGIVIYDNTLW 103 (139)
Q Consensus 91 ~~gG~ii~~~~~~ 103 (139)
+|||.+++.....
T Consensus 133 kpgG~li~~~~~~ 145 (196)
T PRK07402 133 KPGGRLVATASSL 145 (196)
T ss_pred CCCeEEEEEeecH
Confidence 9999999875443
No 36
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.89 E-value=1.2e-08 Score=80.45 Aligned_cols=86 Identities=9% Similarity=0.022 Sum_probs=67.4
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY 82 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~ 82 (139)
|+++.+..+.+|+++|+|+++++.|++|++.+|+ ++++++++|+.++.... .. +||+|++||+.......
T Consensus 187 ~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~---~~D~Vv~dPPr~G~~~~ 256 (315)
T PRK03522 187 FGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GE---VPDLVLVNPPRRGIGKE 256 (315)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CC---CCeEEEECCCCCCccHH
Confidence 5677777788999999999999999999999998 58999999998875432 35 79999999986654333
Q ss_pred HHHHhhcccCCeEEEE
Q 044253 83 RETLMTLFKVGGIVIY 98 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~ 98 (139)
+-..+..+++++++.+
T Consensus 257 ~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 257 LCDYLSQMAPRFILYS 272 (315)
T ss_pred HHHHHHHcCCCeEEEE
Confidence 3333444677877765
No 37
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.87 E-value=7.2e-09 Score=80.60 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=67.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------- 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------- 77 (139)
..+|+++|+|+++++.|++|++.+++.++++++++|+.+.+. .. +||+|+++|+.-
T Consensus 138 ~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--------~~---~fDlIvsNPPyi~~~~~~~~~~~~~ 206 (284)
T TIGR00536 138 NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--------GQ---KIDIIVSNPPYIDEEDLADLPNVVR 206 (284)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--------CC---CccEEEECCCCCCcchhhcCCcccc
Confidence 468999999999999999999999987779999999876432 34 799999987431
Q ss_pred ---------------chHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253 78 ---------------NYRNYRETLMTLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 78 ---------------~~~~~~~~~~~lL~~gG~ii~~~~~~~~ 105 (139)
.|..++..+.++|++||+++++.....+
T Consensus 207 ~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 207 FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ 249 (284)
T ss_pred cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 2345667777899999999987665543
No 38
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.87 E-value=6.9e-09 Score=77.09 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=63.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|+++|+++++++.|++|+..+++.++++++++|+.+.++. .. +||+|+++..... +.+.+.+.|+
T Consensus 98 g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-------~~---~fD~Ii~~~~~~~---~~~~l~~~L~ 164 (205)
T PRK13944 98 GKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-------HA---PFDAIIVTAAAST---IPSALVRQLK 164 (205)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-------CC---CccEEEEccCcch---hhHHHHHhcC
Confidence 589999999999999999999999877899999999765432 35 8999999986543 3356778999
Q ss_pred CCeEEEEeCC
Q 044253 92 VGGIVIYDNT 101 (139)
Q Consensus 92 ~gG~ii~~~~ 101 (139)
+||++++...
T Consensus 165 ~gG~lvi~~~ 174 (205)
T PRK13944 165 DGGVLVIPVE 174 (205)
T ss_pred cCcEEEEEEc
Confidence 9999988543
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.87 E-value=5.1e-09 Score=73.92 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=68.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
.++++++|+|+++++.|+++++..++. +++++++|+.+ ++... .+ +||+|++.+.. .+....++.+.
T Consensus 28 ~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~---~~D~I~~~~~l~~~~~~~~~l~~~~ 97 (152)
T PF13847_consen 28 GAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EE---KFDIIISNGVLHHFPDPEKVLKNII 97 (152)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----ST---TEEEEEEESTGGGTSHHHHHHHHHH
T ss_pred CCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CC---CeeEEEEcCchhhccCHHHHHHHHH
Confidence 678999999999999999999999996 89999999998 54310 24 89999998743 33456788999
Q ss_pred hcccCCeEEEEeCCC
Q 044253 88 TLFKVGGIVIYDNTL 102 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~ 102 (139)
+.|+++|.+++.+..
T Consensus 98 ~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 98 RLLKPGGILIISDPN 112 (152)
T ss_dssp HHEEEEEEEEEEEEE
T ss_pred HHcCCCcEEEEEECC
Confidence 999999999987666
No 40
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.87 E-value=1.3e-08 Score=82.09 Aligned_cols=86 Identities=9% Similarity=0.062 Sum_probs=69.4
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-HH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-RN 81 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-~~ 81 (139)
|+++.+..+.+|++||+|+.+++.|++|++.+++. +++++++|+.+++... .. +||+|++||+.... ..
T Consensus 247 ~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~------~~---~~D~vi~DPPr~G~~~~ 316 (374)
T TIGR02085 247 FGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ------MS---APELVLVNPPRRGIGKE 316 (374)
T ss_pred HHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc------CC---CCCEEEECCCCCCCcHH
Confidence 56777777889999999999999999999999984 8999999998876432 24 79999999986543 44
Q ss_pred HHHHHhhcccCCeEEEEe
Q 044253 82 YRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~ 99 (139)
.++.+. .++|++++.+.
T Consensus 317 ~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 317 LCDYLS-QMAPKFILYSS 333 (374)
T ss_pred HHHHHH-hcCCCeEEEEE
Confidence 555554 47899988774
No 41
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.4e-09 Score=78.41 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=64.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|++++.++.|++|++..|+. +++++++|.....+. .. +||.|++.+.....+ +.+++.|
T Consensus 94 ~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~-------~a---PyD~I~Vtaaa~~vP---~~Ll~QL 159 (209)
T COG2518 94 VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPE-------EA---PYDRIIVTAAAPEVP---EALLDQL 159 (209)
T ss_pred hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCC-------CC---CcCEEEEeeccCCCC---HHHHHhc
Confidence 348999999999999999999999995 499999999887654 46 999999998665544 3567899
Q ss_pred cCCeEEEEeCC
Q 044253 91 KVGGIVIYDNT 101 (139)
Q Consensus 91 ~~gG~ii~~~~ 101 (139)
++||++++--.
T Consensus 160 ~~gGrlv~PvG 170 (209)
T COG2518 160 KPGGRLVIPVG 170 (209)
T ss_pred ccCCEEEEEEc
Confidence 99999987533
No 42
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.85 E-value=1e-08 Score=79.64 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=67.5
Q ss_pred chhhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCc
Q 044253 4 NLESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKD 77 (139)
Q Consensus 4 ~~~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~ 77 (139)
++..+.. +++|++|.+|++..+.|++.++..|+.+++++.++|..+. .. +||.|+.=. +..
T Consensus 77 ~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------~~---~fD~IvSi~~~Ehvg~~ 143 (273)
T PF02353_consen 77 AIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------PG---KFDRIVSIEMFEHVGRK 143 (273)
T ss_dssp HHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------------S-SEEEEESEGGGTCGG
T ss_pred HHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------CC---CCCEEEEEechhhcChh
Confidence 3445555 8899999999999999999999999999999999998764 35 899998743 345
Q ss_pred chHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253 78 NYRNYRETLMTLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii~~~~~~~~ 105 (139)
++..+|+.+.++|+|||.+++..+....
T Consensus 144 ~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 144 NYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp GHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 7889999999999999999987665543
No 43
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.84 E-value=8.1e-09 Score=77.11 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=60.4
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV 92 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~ 92 (139)
+|+++|+++++++.|++|++..|+ ++++++++|+.+.+.. .. +||+|++++....+ .+.+.+.|++
T Consensus 104 ~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~---~fD~Ii~~~~~~~~---~~~~~~~L~~ 169 (215)
T TIGR00080 104 LVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LA---PYDRIYVTAAGPKI---PEALIDQLKE 169 (215)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cC---CCCEEEEcCCcccc---cHHHHHhcCc
Confidence 599999999999999999999998 5799999999765332 35 89999999865433 4457789999
Q ss_pred CeEEEEe
Q 044253 93 GGIVIYD 99 (139)
Q Consensus 93 gG~ii~~ 99 (139)
||++++.
T Consensus 170 gG~lv~~ 176 (215)
T TIGR00080 170 GGILVMP 176 (215)
T ss_pred CcEEEEE
Confidence 9999875
No 44
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.83 E-value=8.3e-09 Score=81.80 Aligned_cols=85 Identities=12% Similarity=0.102 Sum_probs=69.1
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------ 77 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------ 77 (139)
.++++..+.+++++|+|++++..|++|++..|+.+ ++++++|+.+. +.. .. +||+|++|++..
T Consensus 197 lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l-~~~------~~---~~D~Iv~dPPyg~~~~~~ 265 (329)
T TIGR01177 197 LIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL-PLS------SE---SVDAIATDPPYGRSTTAA 265 (329)
T ss_pred HHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC-Ccc------cC---CCCEEEECCCCcCccccc
Confidence 45666778899999999999999999999999865 89999999874 221 35 899999998642
Q ss_pred ------chHHHHHHHhhcccCCeEEEEe
Q 044253 78 ------NYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 78 ------~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
.+..+++.+.+.|+|||++++-
T Consensus 266 ~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 266 GDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 1466788888999999998763
No 45
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=3.8e-08 Score=80.84 Aligned_cols=83 Identities=23% Similarity=0.256 Sum_probs=66.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
..+|+++|+|+++++.+++|+++.|+. +++++++|+..+.... .+ +||.|++|++...
T Consensus 262 ~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~------~~---~fD~Vl~DaPCsg~G~~~~~p~~~~ 331 (431)
T PRK14903 262 QGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYV------QD---TFDRILVDAPCTSLGTARNHPEVLR 331 (431)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhh------hc---cCCEEEECCCCCCCccccCChHHHH
Confidence 468999999999999999999999985 6999999998753222 35 8999999986521
Q ss_pred -------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 79 -------------YRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 79 -------------~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
..++++.+.++|+|||++++.....
T Consensus 332 ~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 332 RVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1345677789999999999865543
No 46
>PRK00811 spermidine synthase; Provisional
Probab=98.83 E-value=2.5e-08 Score=77.73 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=63.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcC--C--CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVE--V--DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYR 80 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g--~--~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~ 80 (139)
.+|++||+|+++++.|++++...+ . .++++++.+|+..++... .+ +||+|++|..-. ...
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~~---~yDvIi~D~~dp~~~~~~l~t~ 171 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------EN---SFDVIIVDSTDPVGPAEGLFTK 171 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------CC---cccEEEECCCCCCCchhhhhHH
Confidence 579999999999999999987542 2 468999999999988652 46 899999986211 124
Q ss_pred HHHHHHhhcccCCeEEEEe
Q 044253 81 NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~ 99 (139)
.+++.+.+.|++||++++.
T Consensus 172 ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 172 EFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred HHHHHHHHhcCCCcEEEEe
Confidence 5678888999999999974
No 47
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.82 E-value=1.7e-08 Score=80.04 Aligned_cols=89 Identities=11% Similarity=0.011 Sum_probs=70.9
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchH
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYR 80 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~ 80 (139)
+.+.+..+.+|++||.++++++.|+++....+...+++++++|+.+. ... .+ +||+|++-.. ..+..
T Consensus 146 s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~~------~~---~FD~Vi~~~vLeHv~d~~ 215 (322)
T PLN02396 146 SEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-ADE------GR---KFDAVLSLEVIEHVANPA 215 (322)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hhc------cC---CCCEEEEhhHHHhcCCHH
Confidence 45566677899999999999999999887766656899999999765 221 35 8999998542 23567
Q ss_pred HHHHHHhhcccCCeEEEEeCCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
.+++.+.++|+|||.+++....
T Consensus 216 ~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 216 EFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HHHHHHHHHcCCCcEEEEEECC
Confidence 7899999999999999987654
No 48
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.82 E-value=2.9e-08 Score=81.29 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=69.7
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-hHH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-YRN 81 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-~~~ 81 (139)
|+++.+....+|+++|+|+++++.|++|++.+++ ++++++++|+.+.++.+... .. +||+|++|++... ...
T Consensus 306 ~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~---~~---~~D~vi~dPPr~G~~~~ 378 (431)
T TIGR00479 306 FTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWA---GQ---IPDVLLLDPPRKGCAAE 378 (431)
T ss_pred HHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhc---CC---CCCEEEECcCCCCCCHH
Confidence 5667776777999999999999999999999998 58999999999876553211 24 7999999998654 566
Q ss_pred HHHHHhhcccCCeEEEE
Q 044253 82 YRETLMTLFKVGGIVIY 98 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~ 98 (139)
+++.+. .+++++++.+
T Consensus 379 ~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 379 VLRTII-ELKPERIVYV 394 (431)
T ss_pred HHHHHH-hcCCCEEEEE
Confidence 666654 4789888766
No 49
>PLN02823 spermine synthase
Probab=98.81 E-value=2e-08 Score=80.08 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=63.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcC--C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------c-
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVE--V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------N- 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g--~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~- 78 (139)
..+|++||+|++.++.||+++...+ + .+|++++.+|+..++... .+ +||+||+|.... .
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------~~---~yDvIi~D~~dp~~~~~~~~Ly 197 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------DE---KFDVIIGDLADPVEGGPCYQLY 197 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------CC---CccEEEecCCCccccCcchhhc
Confidence 3579999999999999999986432 2 479999999999998653 46 899999995321 1
Q ss_pred hHHHHH-HHhhcccCCeEEEEe
Q 044253 79 YRNYRE-TLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ~~~~~~-~~~~lL~~gG~ii~~ 99 (139)
..++++ .+.+.|+|||++++.
T Consensus 198 t~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 198 TKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cHHHHHHHHHHhcCCCcEEEEe
Confidence 245777 788999999999874
No 50
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.81 E-value=1.8e-08 Score=81.34 Aligned_cols=86 Identities=12% Similarity=0.102 Sum_probs=72.5
Q ss_pred Cchhhhhh---hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253 3 FNLESTFF---IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY 79 (139)
Q Consensus 3 ~~~~~~~~---~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~ 79 (139)
+++..+.. ..+|+++|+|+++++.+++|++.++.. +++++++|+...+... .. +||+|++|| ....
T Consensus 58 rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~---~fDvIdlDP-fGs~ 126 (374)
T TIGR00308 58 RAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NR---KFHVIDIDP-FGTP 126 (374)
T ss_pred HHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CC---CCCEEEeCC-CCCc
Confidence 45666654 257999999999999999999999884 6899999999998654 35 799999999 4455
Q ss_pred HHHHHHHhhcccCCeEEEEe
Q 044253 80 RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~ 99 (139)
..+++.+.+.+++||++.+.
T Consensus 127 ~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 127 APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HHHHHHHHHhcccCCEEEEE
Confidence 67999999999999999885
No 51
>PRK14967 putative methyltransferase; Provisional
Probab=98.81 E-value=2.3e-08 Score=75.04 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=62.3
Q ss_pred hhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------
Q 044253 6 ESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------ 78 (139)
Q Consensus 6 ~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------ 78 (139)
..+..+ .+|+++|+|+++++.+++|+..+++ +++++++|+.+.++ .. +||+|+++++...
T Consensus 53 ~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~---~fD~Vi~npPy~~~~~~~~ 119 (223)
T PRK14967 53 AAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FR---PFDVVVSNPPYVPAPPDAP 119 (223)
T ss_pred HHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CC---CeeEEEECCCCCCCCcccc
Confidence 334333 3899999999999999999998886 48999999876532 35 8999999974221
Q ss_pred ------------------hHHHHHHHhhcccCCeEEEE
Q 044253 79 ------------------YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ------------------~~~~~~~~~~lL~~gG~ii~ 98 (139)
+..+++.+.++|++||.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 120 PSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred cccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 23466778899999999986
No 52
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=2.1e-08 Score=82.49 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=65.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
..+|+++|+++++++.+++|+++.|+. +++++++|+......+ .+ +||+|++|++...
T Consensus 275 ~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~------~~---~fD~Vl~D~Pcsg~G~~~~~p~~~~ 344 (444)
T PRK14902 275 TGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKF------AE---KFDKILVDAPCSGLGVIRRKPDIKY 344 (444)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchh------cc---cCCEEEEcCCCCCCeeeccCcchhh
Confidence 468999999999999999999999985 4999999998764333 24 8999999986321
Q ss_pred -------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 79 -------------YRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 79 -------------~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
...+++.+.++|+|||.+++....+
T Consensus 345 ~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 345 NKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1245777889999999999755443
No 53
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=4.9e-08 Score=80.13 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=65.3
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------- 78 (139)
.+|+++|+++++++.+++|++.+|+. +++++++|+.......... .+ +||.|++|++...
T Consensus 278 g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~---~~---~fD~Vl~DaPCSg~G~~~r~p~~~~~ 350 (434)
T PRK14901 278 GEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQW---RG---YFDRILLDAPCSGLGTLHRHPDARWR 350 (434)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccc---cc---cCCEEEEeCCCCcccccccCcchhhh
Confidence 58999999999999999999999995 5999999998763211000 25 7999999986421
Q ss_pred ------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 79 ------------YRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 79 ------------~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
-..+++.+.++|+|||++++.....
T Consensus 351 ~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 351 QTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1345777889999999999765443
No 54
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.79 E-value=1.3e-08 Score=76.06 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=60.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|+++|+++++++.|+++++..|+ ++++++++|+...... .. +||+|++++....+ .+.+.+.|+
T Consensus 102 ~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~-------~~---~fD~I~~~~~~~~~---~~~l~~~Lk 167 (212)
T PRK13942 102 GKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEE-------NA---PYDRIYVTAAGPDI---PKPLIEQLK 167 (212)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCc-------CC---CcCEEEECCCcccc---hHHHHHhhC
Confidence 5899999999999999999999998 4799999998765321 35 89999998865443 346678999
Q ss_pred CCeEEEEe
Q 044253 92 VGGIVIYD 99 (139)
Q Consensus 92 ~gG~ii~~ 99 (139)
|||.+++.
T Consensus 168 pgG~lvi~ 175 (212)
T PRK13942 168 DGGIMVIP 175 (212)
T ss_pred CCcEEEEE
Confidence 99999875
No 55
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.79 E-value=3.7e-08 Score=81.02 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=69.8
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY 82 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~ 82 (139)
|++..+....+|+++|+|+++++.|++|++.+++. +++++++|+.+.+...... .. +||+|++||+.......
T Consensus 311 ~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~~~---~~---~fD~Vi~dPPr~g~~~~ 383 (443)
T PRK13168 311 FTLPLARQAAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQPWA---LG---GFDKVLLDPPRAGAAEV 383 (443)
T ss_pred HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhhhh---cC---CCCEEEECcCCcChHHH
Confidence 45666666789999999999999999999999984 6999999998876432100 24 79999999987766666
Q ss_pred HHHHhhcccCCeEEEEe
Q 044253 83 RETLMTLFKVGGIVIYD 99 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~ 99 (139)
++.+.+ +++++++.+.
T Consensus 384 ~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 384 MQALAK-LGPKRIVYVS 399 (443)
T ss_pred HHHHHh-cCCCeEEEEE
Confidence 765555 6888888764
No 56
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.79 E-value=4.1e-08 Score=75.68 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=63.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------- 78 (139)
.+|+++|+++++++.+++|++.+|+. +++++++|+..+.. . .. +||.|++|++...
T Consensus 97 g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~-~------~~---~fD~Vl~D~Pcsg~G~~~~~p~~~~~ 165 (264)
T TIGR00446 97 GAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA-A------VP---KFDAILLDAPCSGEGVIRKDPSRKKN 165 (264)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh-h------cc---CCCEEEEcCCCCCCcccccChhhhhc
Confidence 58999999999999999999999984 69999999976522 2 35 7999999986432
Q ss_pred ------------hHHHHHHHhhcccCCeEEEEeCCC
Q 044253 79 ------------YRNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 79 ------------~~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
..++++.+.++|+|||++++....
T Consensus 166 ~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 166 WSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 124677778899999999965443
No 57
>PRK01581 speE spermidine synthase; Validated
Probab=98.78 E-value=3.2e-08 Score=79.47 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=62.3
Q ss_pred cceeEEeCCccHHHHHHHHH-----HHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------c
Q 044253 12 YFIVAIDVSRESSETGLPII-----KKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------N 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~-----~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~ 78 (139)
.+|++||+|+++++.|++.. ...++ .+|++++.+|+.+++... .+ +||+||+|.+.. .
T Consensus 175 ~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~------~~---~YDVIIvDl~DP~~~~~~~L 245 (374)
T PRK01581 175 LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP------SS---LYDVIIIDFPDPATELLSTL 245 (374)
T ss_pred CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc------CC---CccEEEEcCCCccccchhhh
Confidence 58999999999999999732 22233 479999999999998754 46 899999996321 1
Q ss_pred h-HHHHHHHhhcccCCeEEEEe
Q 044253 79 Y-RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ~-~~~~~~~~~lL~~gG~ii~~ 99 (139)
| .++++.+.+.|+|||++++.
T Consensus 246 yT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 246 YTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred hHHHHHHHHHHhcCCCcEEEEe
Confidence 2 45788899999999999875
No 58
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.78 E-value=2.3e-08 Score=77.99 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=65.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|+++|+|+.+++.|++|+..+++.+++.+..++.... . .. +||+|+++.....+..++..+.+.|+
T Consensus 183 ~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~------~~---~fDlVvan~~~~~l~~ll~~~~~~Lk 250 (288)
T TIGR00406 183 AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---I------EG---KADVIVANILAEVIKELYPQFSRLVK 250 (288)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---c------CC---CceEEEEecCHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999987888888773221 1 35 89999998765556678888899999
Q ss_pred CCeEEEEeCCC
Q 044253 92 VGGIVIYDNTL 102 (139)
Q Consensus 92 ~gG~ii~~~~~ 102 (139)
|||++++..+.
T Consensus 251 pgG~li~sgi~ 261 (288)
T TIGR00406 251 PGGWLILSGIL 261 (288)
T ss_pred CCcEEEEEeCc
Confidence 99999987654
No 59
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.78 E-value=1.9e-08 Score=77.09 Aligned_cols=78 Identities=14% Similarity=0.061 Sum_probs=60.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
+.+|+++|+|+++++.|++|++.++ ++++++|+.+.+.... .. +||+|++||++..
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~-----~~---~fDlVv~NPPy~~~~~~~~~~~e~~ 177 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL-----RG---RVDILAANAPYVPTDAIALMPPEAR 177 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc-----CC---CEeEEEECCCCCCchhhhcCCHHHH
Confidence 5689999999999999999998876 3789999887654321 24 7999999986421
Q ss_pred -----------------hHHHHHHHhhcccCCeEEEEeC
Q 044253 79 -----------------YRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 79 -----------------~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
+..+++.+.++|++||++++..
T Consensus 178 ~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 178 DHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred hCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2355666678999999999864
No 60
>PLN02366 spermidine synthase
Probab=98.78 E-value=3.9e-08 Score=77.55 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=64.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRN 81 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~ 81 (139)
.+|+.||+|+++++.||+.+... ++ .+|++++.+|+..++.... .+ +||+|++|.... ....
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-----~~---~yDvIi~D~~dp~~~~~~L~t~e 187 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-----EG---TYDAIIVDSSDPVGPAQELFEKP 187 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----CC---CCCEEEEcCCCCCCchhhhhHHH
Confidence 57999999999999999998653 33 4589999999999987542 25 799999997432 1346
Q ss_pred HHHHHhhcccCCeEEEEe
Q 044253 82 YRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~ 99 (139)
+++.+.+.|+|||+++..
T Consensus 188 f~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 188 FFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHHHHHhcCCCcEEEEC
Confidence 788899999999999864
No 61
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.77 E-value=2.5e-08 Score=75.69 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=74.0
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchH
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYR 80 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~ 80 (139)
..+.|+.+++||++|++++++++|+......|+. +++.+..+.+.... ++ +||+|++-- ...+..
T Consensus 74 se~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~---~FDvV~cmEVlEHv~dp~ 141 (243)
T COG2227 74 SEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-------GG---QFDVVTCMEVLEHVPDPE 141 (243)
T ss_pred hHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-------CC---CccEEEEhhHHHccCCHH
Confidence 4567888999999999999999999999999984 88998888887542 35 999999853 344667
Q ss_pred HHHHHHhhcccCCeEEEEeCCCCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~~~~ 104 (139)
.++..+.+++||||.+++..+..+
T Consensus 142 ~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 142 SFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred HHHHHHHHHcCCCcEEEEeccccC
Confidence 789999999999999999877654
No 62
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.76 E-value=1.9e-08 Score=76.43 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=59.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
..+|+++|+|++|++.|++.+...+.. +++++++|+.+. + +. ++ +||+|++--.. .+....++++.
T Consensus 72 ~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p-~~-----d~---sfD~v~~~fglrn~~d~~~~l~E~~ 140 (233)
T PF01209_consen 72 NGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-P-FP-----DN---SFDAVTCSFGLRNFPDRERALREMY 140 (233)
T ss_dssp --EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB----S------TT----EEEEEEES-GGG-SSHHHHHHHHH
T ss_pred ccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-c-CC-----CC---ceeEEEHHhhHHhhCCHHHHHHHHH
Confidence 468999999999999999999998875 899999999875 3 22 46 89999987632 35677899999
Q ss_pred hcccCCeEEEEeCC
Q 044253 88 TLFKVGGIVIYDNT 101 (139)
Q Consensus 88 ~lL~~gG~ii~~~~ 101 (139)
+.|+|||.+++-+.
T Consensus 141 RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 141 RVLKPGGRLVILEF 154 (233)
T ss_dssp HHEEEEEEEEEEEE
T ss_pred HHcCCCeEEEEeec
Confidence 99999999886443
No 63
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.74 E-value=6.9e-08 Score=71.10 Aligned_cols=80 Identities=11% Similarity=0.216 Sum_probs=64.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----------ch
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----------NY 79 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----------~~ 79 (139)
..+++++|+++++++.|++++...++. +++++++|+.+.+..... .. ++|.|+++.+-. ..
T Consensus 40 ~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~----~~---~~d~v~~~~pdpw~k~~h~~~r~~~ 111 (194)
T TIGR00091 40 DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFP----DG---SLSKVFLNFPDPWPKKRHNKRRITQ 111 (194)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCC----CC---ceeEEEEECCCcCCCCCccccccCC
Confidence 568999999999999999999999985 899999999987644321 34 799999975311 12
Q ss_pred HHHHHHHhhcccCCeEEEE
Q 044253 80 RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~ 98 (139)
..+++.+.+.|+|||.+++
T Consensus 112 ~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 5688899999999999976
No 64
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.74 E-value=3.9e-08 Score=82.24 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=64.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------------
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------ 77 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------ 77 (139)
..++|+++|+|+++++.|++|+..+++.++++++++|+.+.+. .. +||+|+++|++-
T Consensus 161 p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~---~fDlIvsNPPYi~~~~~~~l~~~v 229 (506)
T PRK01544 161 PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQ---KFDFIVSNPPYISHSEKSEMAIET 229 (506)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CC---CccEEEECCCCCCchhhhhcCchh
Confidence 4578999999999999999999999988899999999876432 35 799999987421
Q ss_pred -----------------chHHHHHHHhhcccCCeEEEEeC
Q 044253 78 -----------------NYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 78 -----------------~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
.|..+++.+.++|++||.++++.
T Consensus 230 ~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 230 INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 12335566678999999999863
No 65
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.73 E-value=8.6e-08 Score=77.10 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=66.1
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhh---------cccCCCceeEEEEc
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEK---------IHFFFENFDYAFVD 73 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~---------~~~~~~~fD~If~D 73 (139)
|+++.+....+|++||+|+.+++.|++|+..+|+. +++++++|+.++++.+..... ... +||+||+|
T Consensus 220 ~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~---~~D~v~lD 295 (362)
T PRK05031 220 FTLALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY---NFSTIFVD 295 (362)
T ss_pred HHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCC---CCCEEEEC
Confidence 56777777779999999999999999999999984 899999999998865421100 012 58999999
Q ss_pred CCCcc-hHHHHHHHhhcccCCeEEEE
Q 044253 74 AHKDN-YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 74 ~~~~~-~~~~~~~~~~lL~~gG~ii~ 98 (139)
|+... ....++.+.+ +++++++
T Consensus 296 PPR~G~~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 296 PPRAGLDDETLKLVQA---YERILYI 318 (362)
T ss_pred CCCCCCcHHHHHHHHc---cCCEEEE
Confidence 98654 3444454443 6777665
No 66
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.73 E-value=6.5e-09 Score=78.71 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=69.7
Q ss_pred Cchhhhhhhc-ceeEEeCCccHHHHHHHH-HHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---
Q 044253 3 FNLESTFFIY-FIVAIDVSRESSETGLPI-IKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--- 77 (139)
Q Consensus 3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n-~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--- 77 (139)
+|+++..+++ +|++||.|+..++.|+-| +...-...+++++.||+.+.++.+. ++ +||+|+-||+.-
T Consensus 148 tAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-----D~---sfDaIiHDPPRfS~A 219 (287)
T COG2521 148 TAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-----DE---SFDAIIHDPPRFSLA 219 (287)
T ss_pred HHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC-----cc---ccceEeeCCCccchh
Confidence 5788888988 999999999999999866 2211122368999999999998874 46 899999999632
Q ss_pred --ch-HHHHHHHhhcccCCeEEE
Q 044253 78 --NY-RNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 78 --~~-~~~~~~~~~lL~~gG~ii 97 (139)
-| ..+.+++.++|++||.+.
T Consensus 220 geLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 220 GELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred hhHhHHHHHHHHHHHcCcCCcEE
Confidence 23 467888999999999987
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=98.72 E-value=6.2e-08 Score=69.95 Aligned_cols=83 Identities=12% Similarity=0.111 Sum_probs=64.5
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCc-EEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLK-INLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------ 78 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~-i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------ 78 (139)
..+..+.+++++|+|+++++.+++++...+..++ +.++++|..+.+. .. +||+|+++++...
T Consensus 40 ~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~---~~d~vi~n~p~~~~~~~~~ 108 (188)
T PRK14968 40 VAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--------GD---KFDVILFNPPYLPTEEEEE 108 (188)
T ss_pred HHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--------cc---CceEEEECCCcCCCCchhh
Confidence 3444578999999999999999999998887544 8999999866432 34 7999999865311
Q ss_pred ------------------hHHHHHHHhhcccCCeEEEEe
Q 044253 79 ------------------YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ------------------~~~~~~~~~~lL~~gG~ii~~ 99 (139)
+..+++.+.+.|+|||.+++-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 109 WDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred hhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 244678888999999998763
No 68
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.71 E-value=9.9e-08 Score=70.78 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=63.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh-hHHhhhcccCCCceeEEEEcCCC---c--------c
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ-LLKDEKIHFFFENFDYAFVDAHK---D--------N 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~-~~~~~~~~~~~~~fD~If~D~~~---~--------~ 78 (139)
..+|++||+|+++++.|++++...+. .+++++++|+.+.+.. +. .. +||.|++.... . .
T Consensus 64 ~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~-----~~---~~D~V~~~~~~p~~~~~~~~~~~~ 134 (202)
T PRK00121 64 DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFP-----DG---SLDRIYLNFPDPWPKKRHHKRRLV 134 (202)
T ss_pred CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcC-----cc---ccceEEEECCCCCCCccccccccC
Confidence 46899999999999999999998887 5799999999444442 21 35 89999985321 1 1
Q ss_pred hHHHHHHHhhcccCCeEEEEe
Q 044253 79 YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~ 99 (139)
...+++.+.+.|+|||++++.
T Consensus 135 ~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 135 QPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CHHHHHHHHHHcCCCCEEEEE
Confidence 467889999999999999873
No 69
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.69 E-value=8.7e-08 Score=77.65 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=69.3
Q ss_pred Cchhhhhhh--cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253 3 FNLESTFFI--YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR 80 (139)
Q Consensus 3 ~~~~~~~~~--~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~ 80 (139)
|++..+... .+|+++|+|+++++.+++|++.+++. +++++++|+..++.. .. +||+|++||. ....
T Consensus 71 ~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~---~fD~V~lDP~-Gs~~ 138 (382)
T PRK04338 71 RGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ER---KFDVVDIDPF-GSPA 138 (382)
T ss_pred HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cC---CCCEEEECCC-CCcH
Confidence 456655443 38999999999999999999999985 578999999887653 14 7999999996 3456
Q ss_pred HHHHHHhhcccCCeEEEEe
Q 044253 81 NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~ 99 (139)
.+++.+...+++||++.+.
T Consensus 139 ~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 139 PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HHHHHHHHHhcCCCEEEEE
Confidence 7888878889999999885
No 70
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.68 E-value=1e-07 Score=71.94 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=63.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
..+++++|+|+.+++.|++++...++. +++++++|+.+.+. .+ +||+|+++++...
T Consensus 111 ~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~--------~~---~fD~Vi~npPy~~~~~~~~~~~~~~ 178 (251)
T TIGR03534 111 DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLP--------GG---KFDLIVSNPPYIPEADIHLLDPEVR 178 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCc--------CC---ceeEEEECCCCCchhhhhhcChhhh
Confidence 568999999999999999999999884 79999999876432 35 8999999875321
Q ss_pred -----------------hHHHHHHHhhcccCCeEEEEeC
Q 044253 79 -----------------YRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 79 -----------------~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
+..+++.+.+.|++||.+++..
T Consensus 179 ~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 179 FHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1245677788999999999853
No 71
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.68 E-value=3.3e-08 Score=74.02 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=59.3
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|++||++++.++.|+++++..+.. +++++++|....++. .. +||.|++.+.....+ ..+.++|+
T Consensus 98 g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~-------~a---pfD~I~v~~a~~~ip---~~l~~qL~ 163 (209)
T PF01135_consen 98 GRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPE-------EA---PFDRIIVTAAVPEIP---EALLEQLK 163 (209)
T ss_dssp EEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGG-------G----SEEEEEESSBBSS-----HHHHHTEE
T ss_pred ceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhcccc-------CC---CcCEEEEeeccchHH---HHHHHhcC
Confidence 36899999999999999999999984 899999998876543 36 899999998665443 35678899
Q ss_pred CCeEEEEe
Q 044253 92 VGGIVIYD 99 (139)
Q Consensus 92 ~gG~ii~~ 99 (139)
+||++++-
T Consensus 164 ~gGrLV~p 171 (209)
T PF01135_consen 164 PGGRLVAP 171 (209)
T ss_dssp EEEEEEEE
T ss_pred CCcEEEEE
Confidence 99999974
No 72
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.68 E-value=1.4e-07 Score=72.92 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=64.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcC--C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----c--hH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVE--V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----N--YR 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g--~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~--~~ 80 (139)
..+++++|+|+++++.|++++...+ + ..+++++.+|+.+++.+. .+ +||+|++|.... . ..
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------~~---~yDvIi~D~~~~~~~~~~l~~~ 166 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------EN---TFDVIIVDSTDPVGPAETLFTK 166 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------CC---CccEEEEeCCCCCCcccchhHH
Confidence 3579999999999999999986542 2 357999999999998764 36 899999997421 1 35
Q ss_pred HHHHHHhhcccCCeEEEEe
Q 044253 81 NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~ 99 (139)
.+++.+.++|+|||++++.
T Consensus 167 ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHHHHHhCCCcEEEEc
Confidence 6778889999999999975
No 73
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.68 E-value=7.2e-08 Score=69.91 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=62.8
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------- 77 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------- 77 (139)
..+..+.+|+++|+|+++++.+++|++.++. +++++++|+.+.. .. +||+|+++++..
T Consensus 36 ~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---------~~---~fD~Vi~n~p~~~~~~~~~~ 101 (179)
T TIGR00537 36 RLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---------RG---KFDVILFNPPYLPLEDDLRR 101 (179)
T ss_pred HHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc---------CC---cccEEEECCCCCCCcchhcc
Confidence 3344445899999999999999999998876 4899999986642 35 899999987531
Q ss_pred ----------------chHHHHHHHhhcccCCeEEEEeC
Q 044253 78 ----------------NYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 78 ----------------~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+..+++.+.++|+|||.+++-.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 102 GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 03456788889999999988743
No 74
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.68 E-value=7.6e-08 Score=73.67 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=64.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCC---CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEV---DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRN 81 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~---~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~ 81 (139)
.+|++||+|+..++.|++.+..... .+|++++.+|+..++++.. +. +||+|++|..-+ .-.+
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~-----~~---~yDvIi~D~~dp~~~~~~l~t~e 172 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ-----EE---KYDVIIVDLTDPDGPAPNLFTRE 172 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS-----ST----EEEEEEESSSTTSCGGGGSSHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc-----CC---cccEEEEeCCCCCCCcccccCHH
Confidence 5799999999999999999875432 4799999999999998753 33 699999997421 1367
Q ss_pred HHHHHhhcccCCeEEEEeC
Q 044253 82 YRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~ 100 (139)
+++.+.+.|++||++++..
T Consensus 173 f~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 173 FYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhhcCCCcEEEEEc
Confidence 8899999999999999754
No 75
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=3.9e-08 Score=77.08 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=68.0
Q ss_pred Cchhhhhhhcc-eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH
Q 044253 3 FNLESTFFIYF-IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN 81 (139)
Q Consensus 3 ~~~~~~~~~~~-v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~ 81 (139)
+++++++-++. |+++|+|+.+++.|++|++.+++...++....+...... .. +||+|+.+--..-...
T Consensus 176 LaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~--------~~---~~DvIVANILA~vl~~ 244 (300)
T COG2264 176 LAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE--------NG---PFDVIVANILAEVLVE 244 (300)
T ss_pred HHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc--------cC---cccEEEehhhHHHHHH
Confidence 35677777664 999999999999999999999996534444443333321 35 8999999875444556
Q ss_pred HHHHHhhcccCCeEEEEeCCCC
Q 044253 82 YRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
+.+.+..+|+|||++++..++-
T Consensus 245 La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 245 LAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred HHHHHHHHcCCCceEEEEeehH
Confidence 7778889999999999887654
No 76
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.66 E-value=1.1e-07 Score=74.11 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=66.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcC--C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-c------hHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVE--V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-N------YRN 81 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g--~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-~------~~~ 81 (139)
.+++.||+|++.++.+|+.+.... . .+|++++.+|+.++++.. .. +||+|++|..-. . -..
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~~---~fDvIi~D~tdp~gp~~~Lft~e 171 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------EE---KFDVIIVDSTDPVGPAEALFTEE 171 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------CC---cCCEEEEcCCCCCCcccccCCHH
Confidence 579999999999999999987543 3 479999999999999875 35 799999996321 2 267
Q ss_pred HHHHHhhcccCCeEEEEe
Q 044253 82 YRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~ 99 (139)
+++.+.+.|+++|+++..
T Consensus 172 Fy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 172 FYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHHhcCCCcEEEEe
Confidence 899999999999999986
No 77
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.2e-07 Score=77.88 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=71.1
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH-H
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR-N 81 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~-~ 81 (139)
|+|+.|.+..+|+++|+++++++.|++|++.+|+.+ +++..+++.++...... .. .+|.|++||+..... .
T Consensus 307 f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~----~~---~~d~VvvDPPR~G~~~~ 378 (432)
T COG2265 307 FGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWE----GY---KPDVVVVDPPRAGADRE 378 (432)
T ss_pred hhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccc----cC---CCCEEEECCCCCCCCHH
Confidence 889999999999999999999999999999999964 99999999999876521 24 799999999866554 5
Q ss_pred HHHHHhhcccCCeEEEE
Q 044253 82 YRETLMTLFKVGGIVIY 98 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~ 98 (139)
+++.+ ..++|..++.+
T Consensus 379 ~lk~l-~~~~p~~IvYV 394 (432)
T COG2265 379 VLKQL-AKLKPKRIVYV 394 (432)
T ss_pred HHHHH-HhcCCCcEEEE
Confidence 55555 44566666655
No 78
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.66 E-value=1.1e-07 Score=74.00 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=74.8
Q ss_pred hhhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcc
Q 044253 5 LESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDN 78 (139)
Q Consensus 5 ~~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~ 78 (139)
+.+|.. +.+|+++++|+++.+.+++.+...|+.++++++..|..++ .+ +||.|+.=+ ...+
T Consensus 88 ~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~----------~e---~fDrIvSvgmfEhvg~~~ 154 (283)
T COG2230 88 IYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF----------EE---PFDRIVSVGMFEHVGKEN 154 (283)
T ss_pred HHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----------cc---ccceeeehhhHHHhCccc
Confidence 344444 7899999999999999999999999988999999999876 46 799999754 4567
Q ss_pred hHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253 79 YRNYRETLMTLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~~~~~~~ 105 (139)
|..+|+.+.+.|+|||.++...+....
T Consensus 155 ~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 155 YDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 899999999999999999987665543
No 79
>PLN02244 tocopherol O-methyltransferase
Probab=98.65 E-value=7e-08 Score=76.92 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=66.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
+.+|++||+|+.+++.|+++.+..|+.++++++++|+.+. + +. ++ +||+|++... ..+...++..+.
T Consensus 141 g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~-~~-----~~---~FD~V~s~~~~~h~~d~~~~l~e~~ 210 (340)
T PLN02244 141 GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P-FE-----DG---QFDLVWSMESGEHMPDKRKFVQELA 210 (340)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C-CC-----CC---CccEEEECCchhccCCHHHHHHHHH
Confidence 6799999999999999999999999878899999999764 2 21 35 8999998542 234567889999
Q ss_pred hcccCCeEEEEeCC
Q 044253 88 TLFKVGGIVIYDNT 101 (139)
Q Consensus 88 ~lL~~gG~ii~~~~ 101 (139)
++|+|||.+++.+.
T Consensus 211 rvLkpGG~lvi~~~ 224 (340)
T PLN02244 211 RVAAPGGRIIIVTW 224 (340)
T ss_pred HHcCCCcEEEEEEe
Confidence 99999999988543
No 80
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.65 E-value=1.7e-07 Score=76.81 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=63.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
.++|+++|+++++++.+++|+++.|+..++++..+|+........ .. +||.|++|++...
T Consensus 262 ~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~-----~~---~fD~VllDaPcSg~G~~~~~p~~~~ 333 (426)
T TIGR00563 262 QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE-----NE---QFDRILLDAPCSATGVIRRHPDIKW 333 (426)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc-----cc---ccCEEEEcCCCCCCcccccCcchhh
Confidence 368999999999999999999999986445557777654321111 35 7999999975331
Q ss_pred -------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 79 -------------YRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 79 -------------~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
...+++.+.++|+|||.+++....+
T Consensus 334 ~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 334 LRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1346777888999999999865544
No 81
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.65 E-value=6.3e-08 Score=72.00 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=61.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|+++++++.|+++++..++. +++++++|+.+.+.. .. +||+|+++.....+ .+.+.+.|
T Consensus 100 ~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~---~fD~I~~~~~~~~~---~~~l~~~L 165 (212)
T PRK00312 100 VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPA-------YA---PFDRILVTAAAPEI---PRALLEQL 165 (212)
T ss_pred hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCc-------CC---CcCEEEEccCchhh---hHHHHHhc
Confidence 358999999999999999999999985 599999998654321 25 89999999865433 45677899
Q ss_pred cCCeEEEEeC
Q 044253 91 KVGGIVIYDN 100 (139)
Q Consensus 91 ~~gG~ii~~~ 100 (139)
+|||.+++.-
T Consensus 166 ~~gG~lv~~~ 175 (212)
T PRK00312 166 KEGGILVAPV 175 (212)
T ss_pred CCCcEEEEEE
Confidence 9999998753
No 82
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.65 E-value=9e-08 Score=70.69 Aligned_cols=83 Identities=12% Similarity=0.033 Sum_probs=64.3
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cc
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DN 78 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~ 78 (139)
++..+..+.+|+++|+|+++++.+++++...++. +++++++|+.+. .+ .. +||+|++-... ..
T Consensus 45 a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~--~~------~~---~fD~I~~~~~~~~~~~~~ 112 (197)
T PRK11207 45 SLYLAANGFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNL--TF------DG---EYDFILSTVVLMFLEAKT 112 (197)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhC--Cc------CC---CcCEEEEecchhhCCHHH
Confidence 3445556789999999999999999999988884 689999998654 12 35 89999976432 13
Q ss_pred hHHHHHHHhhcccCCeEEEE
Q 044253 79 YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~ 98 (139)
...++..+.++|+|||.+++
T Consensus 113 ~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 113 IPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred HHHHHHHHHHHcCCCcEEEE
Confidence 45788889999999999544
No 83
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.64 E-value=1.1e-07 Score=78.26 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=64.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
..+|+++|+|+++++.+++|++..|+. +++++++|+....+ .. +||+|++|++...
T Consensus 275 ~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~--------~~---~fD~Vl~D~Pcsg~g~~~r~p~~~~ 342 (445)
T PRK14904 275 RGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP--------EE---QPDAILLDAPCTGTGVLGRRAELRW 342 (445)
T ss_pred CcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc--------CC---CCCEEEEcCCCCCcchhhcCcchhh
Confidence 358999999999999999999999984 79999999987531 35 8999999975421
Q ss_pred -------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 79 -------------YRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 79 -------------~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
...++..+.+.|+|||++++.....
T Consensus 343 ~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 343 KLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1235777788999999999855443
No 84
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.64 E-value=1.4e-07 Score=77.38 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=63.1
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------- 78 (139)
.+|+++|+|+++++.+++|++.+|+. ++++++|+.+...... .. +||.|++|++...
T Consensus 269 ~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~-----~~---~fD~Vl~D~Pcs~~G~~~~~p~~~~~ 338 (427)
T PRK10901 269 AQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWD-----GQ---PFDRILLDAPCSATGVIRRHPDIKWL 338 (427)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcc-----cC---CCCEEEECCCCCcccccccCcccccc
Confidence 58999999999999999999999974 7899999986422111 35 7999999986431
Q ss_pred ------------hHHHHHHHhhcccCCeEEEEeCC
Q 044253 79 ------------YRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 79 ------------~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
...+++.+.++|+|||++++...
T Consensus 339 ~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 339 RRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 12467778889999999997654
No 85
>PRK03612 spermidine synthase; Provisional
Probab=98.64 E-value=7.9e-08 Score=80.68 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=62.8
Q ss_pred cceeEEeCCccHHHHHHHHH--HHc---CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------
Q 044253 12 YFIVAIDVSRESSETGLPII--KKV---EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~--~~~---g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------- 78 (139)
.+|++||+|+++++.+|++. ... .+ .++++++.+|+.+++... .+ +||+|++|.+...
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~------~~---~fDvIi~D~~~~~~~~~~~L 392 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL------AE---KFDVIIVDLPDPSNPALGKL 392 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC------CC---CCCEEEEeCCCCCCcchhcc
Confidence 68999999999999999953 221 23 358999999999988654 36 8999999974321
Q ss_pred -hHHHHHHHhhcccCCeEEEEeC
Q 044253 79 -YRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 79 -~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
..++++.+.++|+|||++++..
T Consensus 393 ~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 393 YSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred chHHHHHHHHHhcCCCeEEEEec
Confidence 2357888999999999999754
No 86
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.4e-07 Score=73.43 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=64.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------- 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------- 77 (139)
.++|+++|+|+++++.|++|+..+|+ .++.++.+|.++.+ .+ +||+|+++|++-
T Consensus 134 ~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~---------~~---~fDlIVsNPPYip~~~~~~~~~~~~ 200 (280)
T COG2890 134 DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL---------RG---KFDLIVSNPPYIPAEDPELLPEVVR 200 (280)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc---------CC---ceeEEEeCCCCCCCcccccChhhhc
Confidence 45899999999999999999999999 67777777776654 35 899999987531
Q ss_pred ---------------chHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253 78 ---------------NYRNYRETLMTLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 78 ---------------~~~~~~~~~~~lL~~gG~ii~~~~~~~~ 105 (139)
.+..++..+...|++||+++++.....+
T Consensus 201 ~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~ 243 (280)
T COG2890 201 YEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG 243 (280)
T ss_pred cCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH
Confidence 1344566677899999999987665543
No 87
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.63 E-value=6.1e-08 Score=69.94 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=44.7
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
-|+...+|++||+|+..++.|+.|++-.|+.++++++++|+.+.++.+.. .. .||+||++|+.
T Consensus 17 FA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~---~~D~vFlSPPW 79 (163)
T PF09445_consen 17 FARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NK---IFDVVFLSPPW 79 (163)
T ss_dssp HHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------------SEEEE---B
T ss_pred HHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cc---cccEEEECCCC
Confidence 34456789999999999999999999999999999999999998765421 12 28999999864
No 88
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.63 E-value=1.5e-07 Score=72.39 Aligned_cols=83 Identities=10% Similarity=0.118 Sum_probs=66.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~ 88 (139)
.+|+++|+++++++.|+++....++ ++++++.+|+.+. + +. ++ +||+|+.+.. ..+....++.+.+
T Consensus 103 ~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l-~-~~-----~~---~fD~Vi~~~v~~~~~d~~~~l~~~~r 171 (272)
T PRK11873 103 GKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEAL-P-VA-----DN---SVDVIISNCVINLSPDKERVFKEAFR 171 (272)
T ss_pred CEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhC-C-CC-----CC---ceeEEEEcCcccCCCCHHHHHHHHHH
Confidence 4699999999999999999999888 4899999998653 2 21 35 8999998763 2245678999999
Q ss_pred cccCCeEEEEeCCCCCc
Q 044253 89 LFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 89 lL~~gG~ii~~~~~~~~ 105 (139)
+|+|||++++.++...+
T Consensus 172 ~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 172 VLKPGGRFAISDVVLRG 188 (272)
T ss_pred HcCCCcEEEEEEeeccC
Confidence 99999999987765443
No 89
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.63 E-value=2.5e-08 Score=63.78 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=57.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
..+++++|+++++++.++++....+ +.++++|+... + +. ++ +||+|++.... .+...+++.+.
T Consensus 19 ~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l-~-~~-----~~---sfD~v~~~~~~~~~~~~~~~l~e~~ 84 (95)
T PF08241_consen 19 GASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDL-P-FP-----DN---SFDVVFSNSVLHHLEDPEAALREIY 84 (95)
T ss_dssp TCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSS-S-S------TT----EEEEEEESHGGGSSHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhC-c-cc-----cc---cccccccccceeeccCHHHHHHHHH
Confidence 6789999999999999999876443 55999998776 2 22 46 89999987532 45677899999
Q ss_pred hcccCCeEEEE
Q 044253 88 TLFKVGGIVIY 98 (139)
Q Consensus 88 ~lL~~gG~ii~ 98 (139)
+.|||||++++
T Consensus 85 rvLk~gG~l~~ 95 (95)
T PF08241_consen 85 RVLKPGGRLVI 95 (95)
T ss_dssp HHEEEEEEEEE
T ss_pred HHcCcCeEEeC
Confidence 99999999985
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.62 E-value=1.2e-07 Score=77.52 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=62.0
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------------
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------ 77 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------ 77 (139)
...+|+++|+|+++++.|++|++.++. +++++++|..+..... .. +||+|+++|+.-
T Consensus 274 p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~------~~---~FDLIVSNPPYI~~~e~~l~~~~v 342 (423)
T PRK14966 274 PDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPS------EG---KWDIIVSNPPYIENGDKHLLQGDL 342 (423)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccccc------CC---CccEEEECCCCCCcchhhhcchhh
Confidence 467899999999999999999998875 7999999987642111 35 799999998641
Q ss_pred ----------------chHHHHHHHhhcccCCeEEEEeCC
Q 044253 78 ----------------NYRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 78 ----------------~~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.|..+++.+.++|+|||.++++..
T Consensus 343 ~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 343 RFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred hcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 123455566679999999987543
No 91
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.61 E-value=1.6e-07 Score=75.99 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=62.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCC--CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------hH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVD--LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------YR 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~--~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------~~ 80 (139)
..+|+++|+|+.+++.|++|++.++.. ++++++.+|+.+.+. .. +||+|+++|+... ..
T Consensus 252 ~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~---~fDlIlsNPPfh~~~~~~~~ia~ 320 (378)
T PRK15001 252 QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PF---RFNAVLCNPPFHQQHALTDNVAW 320 (378)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CC---CEEEEEECcCcccCccCCHHHHH
Confidence 578999999999999999999988753 378999999865431 35 8999999987421 24
Q ss_pred HHHHHHhhcccCCeEEEEe
Q 044253 81 NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~ 99 (139)
.++..+.+.|++||.+++-
T Consensus 321 ~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 321 EMFHHARRCLKINGELYIV 339 (378)
T ss_pred HHHHHHHHhcccCCEEEEE
Confidence 5677888999999998775
No 92
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.60 E-value=1.5e-07 Score=70.50 Aligned_cols=79 Identities=18% Similarity=0.282 Sum_probs=64.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
..+|+++|+++++++.|++++...+. ++++++++|+... + +. .+ +||+|++... ..++...++.+.
T Consensus 70 ~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~~-----~~---~fD~V~~~~~l~~~~~~~~~l~~~~ 138 (231)
T TIGR02752 70 EGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL-P-FD-----DN---SFDYVTIGFGLRNVPDYMQVLREMY 138 (231)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC-C-CC-----CC---CccEEEEecccccCCCHHHHHHHHH
Confidence 35899999999999999999988887 5899999999764 2 21 35 8999998753 335677888899
Q ss_pred hcccCCeEEEEeC
Q 044253 88 TLFKVGGIVIYDN 100 (139)
Q Consensus 88 ~lL~~gG~ii~~~ 100 (139)
++|+|||++++-+
T Consensus 139 ~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 139 RVVKPGGKVVCLE 151 (231)
T ss_pred HHcCcCeEEEEEE
Confidence 9999999998754
No 93
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.59 E-value=1.4e-07 Score=69.54 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=62.6
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cc
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DN 78 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~ 78 (139)
+++.+..+.+|+++|+|+.+++.++++.+..++. +++..+|.... .+ .. +||+|++.... ..
T Consensus 45 a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~--~~------~~---~fD~I~~~~~~~~~~~~~ 111 (195)
T TIGR00477 45 SLYLSLAGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA--AL------NE---DYDFIFSTVVFMFLQAGR 111 (195)
T ss_pred HHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc--cc------cC---CCCEEEEecccccCCHHH
Confidence 4455667889999999999999999999888874 77888887542 12 35 89999876422 23
Q ss_pred hHHHHHHHhhcccCCeEEEE
Q 044253 79 YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~ 98 (139)
...+++.+.+.|+|||++++
T Consensus 112 ~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 112 VPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred HHHHHHHHHHHhCCCcEEEE
Confidence 45788899999999998554
No 94
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.59 E-value=3.6e-07 Score=73.30 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=65.0
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh------hh---cccCCCceeEEEEc
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD------EK---IHFFFENFDYAFVD 73 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~------~~---~~~~~~~fD~If~D 73 (139)
|+++.+....+|++||+++++++.|++|++.+|+. +++++++|+.++++..... .+ ... .||+||+|
T Consensus 211 ~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~v~lD 286 (353)
T TIGR02143 211 FSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY---NCSTIFVD 286 (353)
T ss_pred HHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccccC---CCCEEEEC
Confidence 45666766679999999999999999999999984 6999999999987642100 00 001 48999999
Q ss_pred CCCcc-hHHHHHHHhhcccCCeEEEE
Q 044253 74 AHKDN-YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 74 ~~~~~-~~~~~~~~~~lL~~gG~ii~ 98 (139)
|+... ....++.+.+ +++++++
T Consensus 287 PPR~G~~~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 287 PPRAGLDPDTCKLVQA---YERILYI 309 (353)
T ss_pred CCCCCCcHHHHHHHHc---CCcEEEE
Confidence 98554 3445555544 6777766
No 95
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.59 E-value=1.6e-07 Score=67.29 Aligned_cols=78 Identities=14% Similarity=0.030 Sum_probs=59.5
Q ss_pred eEEeCCccHHHHHHHHHHHc--CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHhhc
Q 044253 15 VAIDVSRESSETGLPIIKKV--EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLMTL 89 (139)
Q Consensus 15 ~~vD~s~~~~~~Ar~n~~~~--g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~~l 89 (139)
+++|+|++|++.|+++.... +...+++++++|+.+. +. . .+ +||+|++.... .+....++.+.+.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~-~-----~~---~fD~v~~~~~l~~~~d~~~~l~ei~rv 70 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF-D-----DC---EFDAVTMGYGLRNVVDRLRAMKEMYRV 70 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC-C-----CC---CeeEEEecchhhcCCCHHHHHHHHHHH
Confidence 58999999999998776532 2235799999999875 32 1 45 89999986532 3466788999999
Q ss_pred ccCCeEEEEeCCC
Q 044253 90 FKVGGIVIYDNTL 102 (139)
Q Consensus 90 L~~gG~ii~~~~~ 102 (139)
|+|||.+++-+..
T Consensus 71 LkpGG~l~i~d~~ 83 (160)
T PLN02232 71 LKPGSRVSILDFN 83 (160)
T ss_pred cCcCeEEEEEECC
Confidence 9999999876553
No 96
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.58 E-value=5e-08 Score=76.50 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=64.7
Q ss_pred chhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253 4 NLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY 82 (139)
Q Consensus 4 ~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~ 82 (139)
++.+++.++ +|+++|+|+.+++.|++|++.+|+.+++++. ...+. . .. +||+|+.+-...-...+
T Consensus 176 aiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---~------~~---~~dlvvANI~~~vL~~l 241 (295)
T PF06325_consen 176 AIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---V------EG---KFDLVVANILADVLLEL 241 (295)
T ss_dssp HHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---C------CS----EEEEEEES-HHHHHHH
T ss_pred HHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---c------cc---cCCEEEECCCHHHHHHH
Confidence 566776666 6999999999999999999999998877764 11111 1 24 89999998765555667
Q ss_pred HHHHhhcccCCeEEEEeCCCC
Q 044253 83 RETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~~~ 103 (139)
...+.++|+|||++++..++.
T Consensus 242 ~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 242 APDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp HHHCHHHEEEEEEEEEEEEEG
T ss_pred HHHHHHhhCCCCEEEEccccH
Confidence 777888999999999877665
No 97
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.57 E-value=1.4e-07 Score=71.97 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=63.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYRE 84 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~~ 84 (139)
...+++++|+|++|++.|++++...+...+++++++|+.+. + .. .+|+|++.... .....+++
T Consensus 81 ~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~--------~~---~~D~vv~~~~l~~l~~~~~~~~l~ 148 (247)
T PRK15451 81 DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A--------IE---NASMVVLNFTLQFLEPSERQALLD 148 (247)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-C--------CC---CCCEEehhhHHHhCCHHHHHHHHH
Confidence 35789999999999999999999888877899999998764 1 24 68998875421 12356789
Q ss_pred HHhhcccCCeEEEEeC
Q 044253 85 TLMTLFKVGGIVIYDN 100 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~ 100 (139)
.+.+.|+|||.+++.+
T Consensus 149 ~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 149 KIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHHhcCCCCEEEEEE
Confidence 9999999999998865
No 98
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.57 E-value=1.5e-07 Score=70.23 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=66.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~~~~~~~~ 87 (139)
..+|+++|+|+++++.|++++...|+.++++++.+|+... + . .+ +||+|++.. ...+...+++.+.
T Consensus 23 ~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~---~fD~I~~~~~l~~~~~~~~~l~~~~ 91 (224)
T smart00828 23 HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PD---TYDLVFGFEVIHHIKDKMDLFSNIS 91 (224)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CC---CCCEeehHHHHHhCCCHHHHHHHHH
Confidence 4689999999999999999999999988999999998543 1 1 35 899999743 2235678899999
Q ss_pred hcccCCeEEEEeCCC
Q 044253 88 TLFKVGGIVIYDNTL 102 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~ 102 (139)
++|+|||++++.+..
T Consensus 92 ~~LkpgG~l~i~~~~ 106 (224)
T smart00828 92 RHLKDGGHLVLADFI 106 (224)
T ss_pred HHcCCCCEEEEEEcc
Confidence 999999999987653
No 99
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.57 E-value=1.6e-07 Score=71.92 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=62.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH-HHH-hhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP-ALD-QLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~-~l~-~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
..+|++.|.+++.++.|++|++.+|+.+++++.+.|+.+ ... .+ +. .+|.||+|-+ .++..++.+.+
T Consensus 65 ~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~------~~---~~DavfLDlp--~Pw~~i~~~~~ 133 (247)
T PF08704_consen 65 TGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL------ES---DFDAVFLDLP--DPWEAIPHAKR 133 (247)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-------TT---SEEEEEEESS--SGGGGHHHHHH
T ss_pred CeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc------cC---cccEEEEeCC--CHHHHHHHHHH
Confidence 358999999999999999999999998899999999963 221 11 24 7999999986 45667888889
Q ss_pred cc-cCCeEEEE
Q 044253 89 LF-KVGGIVIY 98 (139)
Q Consensus 89 lL-~~gG~ii~ 98 (139)
.| ++||.+++
T Consensus 134 ~L~~~gG~i~~ 144 (247)
T PF08704_consen 134 ALKKPGGRICC 144 (247)
T ss_dssp HE-EEEEEEEE
T ss_pred HHhcCCceEEE
Confidence 99 89999975
No 100
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.55 E-value=2.3e-07 Score=72.21 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=64.8
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----Ccc
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDN 78 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~ 78 (139)
+++.+..+.+|+++|+|+++++.++++++..++ ++++..+|+... .+ .+ +||+|++... ...
T Consensus 135 ~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~--~~------~~---~fD~I~~~~vl~~l~~~~ 201 (287)
T PRK12335 135 SLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA--SI------QE---EYDFILSTVVLMFLNRER 201 (287)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc--cc------cC---CccEEEEcchhhhCCHHH
Confidence 455666788999999999999999999998887 588888887653 12 35 8999998642 124
Q ss_pred hHHHHHHHhhcccCCeEEEE
Q 044253 79 YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~ 98 (139)
...+++.+.+.|+|||++++
T Consensus 202 ~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 202 IPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred HHHHHHHHHHhcCCCcEEEE
Confidence 56788899999999999654
No 101
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.54 E-value=3.4e-07 Score=69.95 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=60.5
Q ss_pred hhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253 7 STFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85 (139)
Q Consensus 7 ~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~ 85 (139)
++..+. +|+++|+|+.+++.|++|++.+++.+++.+..+ +. +||+|+++.....+..+++.
T Consensus 137 ~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~---------------~~---~fD~Vvani~~~~~~~l~~~ 198 (250)
T PRK00517 137 AAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG---------------DL---KADVIVANILANPLLELAPD 198 (250)
T ss_pred HHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC---------------CC---CcCEEEEcCcHHHHHHHHHH
Confidence 333444 599999999999999999999988555554332 13 69999998765556678888
Q ss_pred HhhcccCCeEEEEeCCC
Q 044253 86 LMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~ 102 (139)
+.+.|+|||++++..+.
T Consensus 199 ~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 199 LARLLKPGGRLILSGIL 215 (250)
T ss_pred HHHhcCCCcEEEEEECc
Confidence 99999999999987554
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.53 E-value=3.2e-07 Score=70.35 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=60.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
..+++++|+|+++++.|++|+. .+...+++++++|+.+.+. .. +||+|+++++...
T Consensus 132 ~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~--------~~---~fD~Iv~npPy~~~~~~~~~~~~v~ 199 (275)
T PRK09328 132 DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP--------GG---RFDLIVSNPPYIPEADIHLLQPEVR 199 (275)
T ss_pred CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC--------CC---ceeEEEECCCcCCcchhhhCCchhh
Confidence 4789999999999999999998 4444689999999855321 25 8999999875321
Q ss_pred -----------------hHHHHHHHhhcccCCeEEEEeC
Q 044253 79 -----------------YRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 79 -----------------~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
+..+++.+.++|++||++++..
T Consensus 200 ~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 200 DHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred hcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2345666678999999999853
No 103
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.52 E-value=2.2e-07 Score=61.15 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=56.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-C-----cchHHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-K-----DNYRNYRET 85 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-~-----~~~~~~~~~ 85 (139)
.+++++|+|+++++.++++....+. +++++++|+.++ +.. .+ +||+|++-.. . .....+++.
T Consensus 25 ~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~---~~D~v~~~~~~~~~~~~~~~~~ll~~ 92 (101)
T PF13649_consen 25 SRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DG---KFDLVVCSGLSLHHLSPEELEALLRR 92 (101)
T ss_dssp SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SS---SEEEEEE-TTGGGGSSHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CC---CeeEEEEcCCccCCCCHHHHHHHHHH
Confidence 7899999999999999999988776 699999999885 432 56 8999999332 1 234567888
Q ss_pred HhhcccCCe
Q 044253 86 LMTLFKVGG 94 (139)
Q Consensus 86 ~~~lL~~gG 94 (139)
+.++|+|||
T Consensus 93 ~~~~l~pgG 101 (101)
T PF13649_consen 93 IARLLRPGG 101 (101)
T ss_dssp HHHTEEEEE
T ss_pred HHHHhCCCC
Confidence 999999998
No 104
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.50 E-value=3.4e-07 Score=70.47 Aligned_cols=82 Identities=13% Similarity=0.013 Sum_probs=62.4
Q ss_pred cceeEEeCCccHHHHHHHHHHH--cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKK--VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETL 86 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~--~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~ 86 (139)
.+|+++|+|++|++.|+++... .+..++++++++|+.+. + +. ++ +||+|++... ..+....+..+
T Consensus 99 ~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~~-----~~---sfD~V~~~~~l~~~~d~~~~l~ei 168 (261)
T PLN02233 99 GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-FD-----DC---YFDAITMGYGLRNVVDRLKAMQEM 168 (261)
T ss_pred CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-CC-----CC---CEeEEEEecccccCCCHHHHHHHH
Confidence 5899999999999999987642 22235799999998764 2 21 45 8999998642 23567789999
Q ss_pred hhcccCCeEEEEeCCCC
Q 044253 87 MTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 87 ~~lL~~gG~ii~~~~~~ 103 (139)
.+.|+|||.+++-+...
T Consensus 169 ~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 169 YRVLKPGSRVSILDFNK 185 (261)
T ss_pred HHHcCcCcEEEEEECCC
Confidence 99999999998765543
No 105
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.49 E-value=6e-07 Score=67.89 Aligned_cols=81 Identities=10% Similarity=0.109 Sum_probs=64.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~ 85 (139)
..+++++|+|+++++.|++++...+...+++++++|+.+. + .. .+|+|++..... +...+++.
T Consensus 79 ~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~~---~~d~v~~~~~l~~~~~~~~~~~l~~ 146 (239)
T TIGR00740 79 NVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-E--------IK---NASMVILNFTLQFLPPEDRIALLTK 146 (239)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-C--------CC---CCCEEeeecchhhCCHHHHHHHHHH
Confidence 5689999999999999999998877666899999999765 1 24 689888754321 23567889
Q ss_pred HhhcccCCeEEEEeCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~ 103 (139)
+.+.|+|||.+++.+...
T Consensus 147 i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 147 IYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred HHHhcCCCeEEEEeeccc
Confidence 999999999999876543
No 106
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.45 E-value=1.2e-06 Score=72.73 Aligned_cols=82 Identities=22% Similarity=0.191 Sum_probs=65.3
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY------------ 79 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~------------ 79 (139)
..|+++|+++..+..+++|+++.|+. ++.+.+.|+......+ .. .||.|++|++....
T Consensus 139 g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~------~~---~fD~ILvDaPCSG~G~~rk~p~~~~~ 208 (470)
T PRK11933 139 GAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAAL------PE---TFDAILLDAPCSGEGTVRKDPDALKN 208 (470)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhc------hh---hcCeEEEcCCCCCCcccccCHHHhhh
Confidence 57999999999999999999999994 6899999988753333 35 79999999865410
Q ss_pred -------------HHHHHHHhhcccCCeEEEEeCCCC
Q 044253 80 -------------RNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 80 -------------~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
..+++.+.++|+|||+||+....+
T Consensus 209 ~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 209 WSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 345677778999999999755443
No 107
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.44 E-value=3.7e-07 Score=68.65 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=53.7
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
+..+..|++||+||..+..||.|++-.|+.+||+|++||.++..+.+... .. .+|+||.-|+.
T Consensus 113 a~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~---K~---~~~~vf~sppw 175 (263)
T KOG2730|consen 113 ALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD---KI---KYDCVFLSPPW 175 (263)
T ss_pred HHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---hh---eeeeeecCCCC
Confidence 44567899999999999999999999999999999999999988766332 24 68899998764
No 108
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.43 E-value=1.3e-06 Score=70.83 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=65.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---------hHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---------YRN 81 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---------~~~ 81 (139)
...++++|+++.+++.|.+++...|+. ++.++++|+...+..+. .+ ++|.|++..+-+. ...
T Consensus 146 ~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~-----~~---s~D~I~lnFPdPW~KkrHRRlv~~~ 216 (390)
T PRK14121 146 NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLP-----SN---SVEKIFVHFPVPWDKKPHRRVISED 216 (390)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCC-----CC---ceeEEEEeCCCCccccchhhccHHH
Confidence 578999999999999999999999984 69999999988765443 45 8999998653211 156
Q ss_pred HHHHHhhcccCCeEEEE
Q 044253 82 YRETLMTLFKVGGIVIY 98 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~ 98 (139)
+++.+.++|++||.+.+
T Consensus 217 fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 217 FLNEALRVLKPGGTLEL 233 (390)
T ss_pred HHHHHHHHcCCCcEEEE
Confidence 78899999999999876
No 109
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.42 E-value=1e-06 Score=67.66 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=65.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCc--EEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLK--INLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETL 86 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~--i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~ 86 (139)
++|+.+|+|++|++.+++...+.++.+. +.++++||.++ + +. ++ +||...+-.. ..++.+.++++
T Consensus 131 ~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-Fd-----d~---s~D~yTiafGIRN~th~~k~l~EA 200 (296)
T KOG1540|consen 131 SKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-FD-----DD---SFDAYTIAFGIRNVTHIQKALREA 200 (296)
T ss_pred ceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-CC-----CC---cceeEEEecceecCCCHHHHHHHH
Confidence 7899999999999999999988888554 99999999885 4 42 56 8999988764 34567889999
Q ss_pred hhcccCCeEEEE
Q 044253 87 MTLFKVGGIVIY 98 (139)
Q Consensus 87 ~~lL~~gG~ii~ 98 (139)
.+.|||||++.+
T Consensus 201 YRVLKpGGrf~c 212 (296)
T KOG1540|consen 201 YRVLKPGGRFSC 212 (296)
T ss_pred HHhcCCCcEEEE
Confidence 999999999875
No 110
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.40 E-value=1.1e-06 Score=70.29 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=59.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------hHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------YRNY 82 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------~~~~ 82 (139)
..+|+++|+|+.+++.|++|++.+++. .+++.+|+... . .+ +||+|+++++... ...+
T Consensus 220 ~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~---~------~~---~fDlIvsNPPFH~g~~~~~~~~~~~ 285 (342)
T PRK09489 220 KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD---I------KG---RFDMIISNPPFHDGIQTSLDAAQTL 285 (342)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc---c------CC---CccEEEECCCccCCccccHHHHHHH
Confidence 358999999999999999999999874 57788887643 2 35 8999999986432 3567
Q ss_pred HHHHhhcccCCeEEEE
Q 044253 83 RETLMTLFKVGGIVIY 98 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~ 98 (139)
+..+.+.|+|||.+++
T Consensus 286 i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 286 IRGAVRHLNSGGELRI 301 (342)
T ss_pred HHHHHHhcCcCCEEEE
Confidence 8888899999999865
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.39 E-value=1.4e-06 Score=69.28 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=59.4
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV 92 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~ 92 (139)
+|+++|+++++++.|+++++..|. ++++++++|+.+.+.. .. +||+|+++..... ..+.+.+.|++
T Consensus 107 ~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~-------~~---~fD~Ii~~~g~~~---ip~~~~~~Lkp 172 (322)
T PRK13943 107 LVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPE-------FA---PYDVIFVTVGVDE---VPETWFTQLKE 172 (322)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccc-------cC---CccEEEECCchHH---hHHHHHHhcCC
Confidence 599999999999999999999998 5799999998765432 25 8999999875433 33456789999
Q ss_pred CeEEEEe
Q 044253 93 GGIVIYD 99 (139)
Q Consensus 93 gG~ii~~ 99 (139)
||.+++.
T Consensus 173 gG~Lvv~ 179 (322)
T PRK13943 173 GGRVIVP 179 (322)
T ss_pred CCEEEEE
Confidence 9998874
No 112
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.37 E-value=1.6e-06 Score=63.31 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=57.1
Q ss_pred eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----------chHHH
Q 044253 14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----------NYRNY 82 (139)
Q Consensus 14 v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----------~~~~~ 82 (139)
++++|+++++++.|++|++..|+.+.+.+.+.|+.++- .. .+ ++|.|++|+++. -|..+
T Consensus 64 ~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~-~~------~~---~~d~IvtnPPyG~r~~~~~~~~~ly~~~ 133 (179)
T PF01170_consen 64 IIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP-LP------DG---SVDAIVTNPPYGRRLGSKKDLEKLYRQF 133 (179)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-GT------TS---BSCEEEEE--STTSHCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-cc------cC---CCCEEEECcchhhhccCHHHHHHHHHHH
Confidence 56999999999999999999999889999999998863 11 46 899999999753 24556
Q ss_pred HHHHhhcccCCeEEEEe
Q 044253 83 RETLMTLFKVGGIVIYD 99 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~ 99 (139)
++.+.+.|++..++++.
T Consensus 134 ~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 134 LRELKRVLKPRAVFLTT 150 (179)
T ss_dssp HHHHHCHSTTCEEEEEE
T ss_pred HHHHHHHCCCCEEEEEE
Confidence 77777889886666654
No 113
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.37 E-value=1.2e-06 Score=64.81 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=64.9
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcc
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDN 78 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~ 78 (139)
++..|..|..|+++|+|+.+++.+++..+..++. ++..+.|..+. .+ .+ .||+|+... ....
T Consensus 45 alyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~--~~------~~---~yD~I~st~v~~fL~~~~ 111 (192)
T PF03848_consen 45 ALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDF--DF------PE---EYDFIVSTVVFMFLQREL 111 (192)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCB--S-------TT---TEEEEEEESSGGGS-GGG
T ss_pred HHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhc--cc------cC---CcCEEEEEEEeccCCHHH
Confidence 4678888999999999999999999999888885 99999997654 22 35 899998753 2234
Q ss_pred hHHHHHHHhhcccCCeEEEEeCC
Q 044253 79 YRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
...+++.+...++|||++++...
T Consensus 112 ~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 112 RPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCcEEEEEEEe
Confidence 56788888899999999887443
No 114
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.34 E-value=8e-07 Score=65.82 Aligned_cols=81 Identities=11% Similarity=0.179 Sum_probs=58.5
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------CcchH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KDNYR 80 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~~~~ 80 (139)
.|.+..+++++|+++.+++.||+.+... ++++++++|+.+..+ .+ +||+|++-.. .....
T Consensus 61 LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P--------~~---~FDLIV~SEVlYYL~~~~~L~ 126 (201)
T PF05401_consen 61 LAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP--------EG---RFDLIVLSEVLYYLDDAEDLR 126 (201)
T ss_dssp HGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----------SS----EEEEEEES-GGGSSSHHHHH
T ss_pred HHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC--------CC---CeeEEEEehHhHcCCCHHHHH
Confidence 4556678999999999999999988643 479999999977643 46 8999998642 12234
Q ss_pred HHHHHHhhcccCCeEEEEeCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.++..+...|+|||.+|+-+.
T Consensus 127 ~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 127 AALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEEe
Confidence 567788899999999998543
No 115
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.33 E-value=6e-07 Score=69.03 Aligned_cols=86 Identities=15% Similarity=0.084 Sum_probs=65.9
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCC-----cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CC
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDL-----KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HK 76 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-----~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~ 76 (139)
-+.|+.++.|++||.++++++.|++.....+..+ ++++.+.++... .+ +||.|++-- ..
T Consensus 105 epLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~---~fDaVvcsevleHV 171 (282)
T KOG1270|consen 105 EPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG---KFDAVVCSEVLEHV 171 (282)
T ss_pred hhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc---ccceeeeHHHHHHH
Confidence 3678889999999999999999999855555433 366666666543 35 899999854 23
Q ss_pred cchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 77 DNYRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 77 ~~~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
.+..++++.+.++|+|||.+++..+..
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 356788999999999999999876543
No 116
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.31 E-value=1.4e-06 Score=67.14 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=61.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE-cCC----CcchHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV-DAH----KDNYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~-D~~----~~~~~~~~~~ 85 (139)
+.+|+++|+|+++++.|++++.. .++++++++|+... + +. +. +||+|++ +.- ..+...+++.
T Consensus 75 ~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~~-----~~---~FD~V~s~~~l~h~~~~d~~~~l~~ 141 (263)
T PTZ00098 75 GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-FP-----EN---TFDMIYSRDAILHLSYADKKKLFEK 141 (263)
T ss_pred CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-CC-----CC---CeEEEEEhhhHHhCCHHHHHHHHHH
Confidence 56899999999999999998654 35799999998743 1 21 35 8999998 321 1245678899
Q ss_pred HhhcccCCeEEEEeCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~ 103 (139)
+.++|+|||.+++.+...
T Consensus 142 i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 142 CYKWLKPNGILLITDYCA 159 (263)
T ss_pred HHHHcCCCcEEEEEEecc
Confidence 999999999999876544
No 117
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.31 E-value=1.1e-06 Score=69.97 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=69.1
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeC-ChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFVDAHKD---- 77 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~-da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---- 77 (139)
|.++++..+++++++|++..|+.-|+.|++..++.+ ..++.. |+... + +. +. ++|.|.+||++.
T Consensus 211 iLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~l-p-l~-----~~---~vdaIatDPPYGrst~ 279 (347)
T COG1041 211 ILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNL-P-LR-----DN---SVDAIATDPPYGRSTK 279 (347)
T ss_pred HHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccC-C-CC-----CC---ccceEEecCCCCcccc
Confidence 457888999999999999999999999999999854 555555 88775 3 42 34 699999999653
Q ss_pred --------chHHHHHHHhhcccCCeEEEE
Q 044253 78 --------NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 78 --------~~~~~~~~~~~lL~~gG~ii~ 98 (139)
-|.+.++.+.+.|++||++++
T Consensus 280 ~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 280 IKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred cccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 156778888899999999886
No 118
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.30 E-value=1.2e-06 Score=65.97 Aligned_cols=83 Identities=11% Similarity=0.025 Sum_probs=59.4
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCC--------------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeE
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEV--------------DLKINLMESRALPALDQLLKDEKIHFFFENFDY 69 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~--------------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~ 69 (139)
++..|.++.+|++||+|+.+++.+.+ +.++ ..+++++++|+.+..... .. .||+
T Consensus 52 a~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~------~~---~fd~ 119 (218)
T PRK13255 52 MLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD------LA---DVDA 119 (218)
T ss_pred HHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc------CC---CeeE
Confidence 45567789999999999999998743 2222 357999999998763221 24 7999
Q ss_pred EEEc-----CCCcchHHHHHHHhhcccCCeEEEE
Q 044253 70 AFVD-----AHKDNYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 70 If~D-----~~~~~~~~~~~~~~~lL~~gG~ii~ 98 (139)
|+-- .+...-..++..+.++|+|||++++
T Consensus 120 v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 120 VYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9832 2333446788999999999986443
No 119
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.30 E-value=2.3e-06 Score=70.80 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=63.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
+.+|+++|+|+++++.|+++.. +...+++++++|+... + +. .+ +||+|++... ..+...++..+.
T Consensus 289 ~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~-~-~~-----~~---~fD~I~s~~~l~h~~d~~~~l~~~~ 356 (475)
T PLN02336 289 DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKK-T-YP-----DN---SFDVIYSRDTILHIQDKPALFRSFF 356 (475)
T ss_pred CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccC-C-CC-----CC---CEEEEEECCcccccCCHHHHHHHHH
Confidence 5689999999999999999875 4446799999998764 1 21 35 7999998643 234677899999
Q ss_pred hcccCCeEEEEeCCCC
Q 044253 88 TLFKVGGIVIYDNTLW 103 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~ 103 (139)
+.|+|||.+++.+...
T Consensus 357 r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 357 KWLKPGGKVLISDYCR 372 (475)
T ss_pred HHcCCCeEEEEEEecc
Confidence 9999999999876544
No 120
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.30 E-value=2.5e-07 Score=60.50 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=46.8
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETL 86 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~ 86 (139)
...+++++|+|+.+++.|++.+...+.. .......+..+...... .+ +||+|++-.. ..+...+++.+
T Consensus 19 ~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~---~fD~V~~~~vl~~l~~~~~~l~~~ 89 (99)
T PF08242_consen 19 PDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDP-----PE---SFDLVVASNVLHHLEDIEAVLRNI 89 (99)
T ss_dssp -EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC------------SEEEEE-TTS--S-HHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhccc-----cc---ccceehhhhhHhhhhhHHHHHHHH
Confidence 4678999999999999999999987753 33334333333322211 24 8999998653 23556788999
Q ss_pred hhcccCCeEE
Q 044253 87 MTLFKVGGIV 96 (139)
Q Consensus 87 ~~lL~~gG~i 96 (139)
.++|+|||+|
T Consensus 90 ~~~L~pgG~l 99 (99)
T PF08242_consen 90 YRLLKPGGIL 99 (99)
T ss_dssp TTT-TSS-EE
T ss_pred HHHcCCCCCC
Confidence 9999999986
No 121
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.28 E-value=5.7e-06 Score=62.05 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=64.7
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYR 83 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~ 83 (139)
.+..+.+++++|++++++..|++++...+. +++++.+++.+..... .+ +||+|++... ..+...++
T Consensus 66 l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~------~~---~fD~Ii~~~~l~~~~~~~~~l 134 (233)
T PRK05134 66 MARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH------PG---QFDVVTCMEMLEHVPDPASFV 134 (233)
T ss_pred HHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc------CC---CccEEEEhhHhhccCCHHHHH
Confidence 344467899999999999999999987775 5888889888764322 35 8999998642 23456678
Q ss_pred HHHhhcccCCeEEEEeC
Q 044253 84 ETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~ 100 (139)
+.+.+.|++||.+++..
T Consensus 135 ~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 135 RACAKLVKPGGLVFFST 151 (233)
T ss_pred HHHHHHcCCCcEEEEEe
Confidence 88999999999999864
No 122
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.28 E-value=1.9e-06 Score=65.64 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=58.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
..+|+++|+|+.+++.|++++ .+++++.+|+..... .. +||+|++.... .+...++..+.
T Consensus 55 ~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~---~fD~v~~~~~l~~~~d~~~~l~~~~ 117 (258)
T PRK01683 55 AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQ---ALDLIFANASLQWLPDHLELFPRLV 117 (258)
T ss_pred CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CC---CccEEEEccChhhCCCHHHHHHHHH
Confidence 578999999999999999874 358899999875421 35 89999998642 34567899999
Q ss_pred hcccCCeEEEEe
Q 044253 88 TLFKVGGIVIYD 99 (139)
Q Consensus 88 ~lL~~gG~ii~~ 99 (139)
+.|+|||.+++.
T Consensus 118 ~~LkpgG~~~~~ 129 (258)
T PRK01683 118 SLLAPGGVLAVQ 129 (258)
T ss_pred HhcCCCcEEEEE
Confidence 999999999885
No 123
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.28 E-value=1.8e-06 Score=65.92 Aligned_cols=70 Identities=11% Similarity=-0.008 Sum_probs=56.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
+.+|+++|+|+.+++.|++. +++++++|+.+.. . .. +||+|++... ..+....+..+.
T Consensus 53 ~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~-------~~---~fD~v~~~~~l~~~~d~~~~l~~~~ 113 (255)
T PRK14103 53 GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-P-------KP---DTDVVVSNAALQWVPEHADLLVRWV 113 (255)
T ss_pred CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-C-------CC---CceEEEEehhhhhCCCHHHHHHHHH
Confidence 56899999999999999762 4788999987642 1 35 8999999763 234567888899
Q ss_pred hcccCCeEEEEe
Q 044253 88 TLFKVGGIVIYD 99 (139)
Q Consensus 88 ~lL~~gG~ii~~ 99 (139)
+.|+|||.+++.
T Consensus 114 ~~LkpgG~l~~~ 125 (255)
T PRK14103 114 DELAPGSWIAVQ 125 (255)
T ss_pred HhCCCCcEEEEE
Confidence 999999999875
No 124
>PRK10742 putative methyltransferase; Provisional
Probab=98.26 E-value=2.7e-06 Score=65.17 Aligned_cols=64 Identities=8% Similarity=-0.003 Sum_probs=53.1
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHc------CC--CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKV------EV--DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~------g~--~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
+..+..+++|++||.|+......+++++.. +. ..+++++++|+.++|... .. +||+||+||..
T Consensus 104 ~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------~~---~fDVVYlDPMf 174 (250)
T PRK10742 104 FVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------TP---RPQVVYLDPMF 174 (250)
T ss_pred HHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------CC---CCcEEEECCCC
Confidence 455566888999999999999999999985 32 257999999999999865 45 79999999854
Q ss_pred c
Q 044253 77 D 77 (139)
Q Consensus 77 ~ 77 (139)
+
T Consensus 175 p 175 (250)
T PRK10742 175 P 175 (250)
T ss_pred C
Confidence 3
No 125
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.25 E-value=2.6e-06 Score=63.44 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=64.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~ 88 (139)
.+++++|+++++++.+++++...+...+++++.+|+.+.. .. .. +||+|++... .......++.+.+
T Consensus 77 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~-----~~---~~D~I~~~~~l~~~~~~~~~l~~~~~ 146 (239)
T PRK00216 77 GEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--FP-----DN---SFDAVTIAFGLRNVPDIDKALREMYR 146 (239)
T ss_pred CeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--CC-----CC---CccEEEEecccccCCCHHHHHHHHHH
Confidence 7899999999999999999987777678999999987642 11 35 8999998642 2356778889999
Q ss_pred cccCCeEEEEeCC
Q 044253 89 LFKVGGIVIYDNT 101 (139)
Q Consensus 89 lL~~gG~ii~~~~ 101 (139)
+|++||.+++-+.
T Consensus 147 ~L~~gG~li~~~~ 159 (239)
T PRK00216 147 VLKPGGRLVILEF 159 (239)
T ss_pred hccCCcEEEEEEe
Confidence 9999999987543
No 126
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.24 E-value=1.9e-06 Score=64.59 Aligned_cols=86 Identities=10% Similarity=-0.006 Sum_probs=59.8
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCC--------------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeE
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEV--------------DLKINLMESRALPALDQLLKDEKIHFFFENFDY 69 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~--------------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~ 69 (139)
++..|..+.+|++||+|+.+++.+.+. +++ ..+++++++|+.+.-... .. +||.
T Consensus 49 a~~LA~~G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~------~~---~fD~ 116 (213)
T TIGR03840 49 LAWLAEQGHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD------LG---PVDA 116 (213)
T ss_pred HHHHHhCCCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCccc------CC---CcCE
Confidence 455677889999999999999986432 221 246899999998762211 24 6888
Q ss_pred EEEcC-----CCcchHHHHHHHhhcccCCeEEEEeCC
Q 044253 70 AFVDA-----HKDNYRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 70 If~D~-----~~~~~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
|+--+ +......++..+.++|+|||++++...
T Consensus 117 i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 117 VYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred EEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 86432 222345688999999999998665433
No 127
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=4.7e-06 Score=67.00 Aligned_cols=84 Identities=21% Similarity=0.298 Sum_probs=65.1
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------- 78 (139)
..|+++|+|+..+...++|+++.|+. ++.+.+.|+......... .. +||.|++|++...
T Consensus 183 ~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~----~~---~fD~iLlDaPCSg~G~irr~Pd~~~~ 254 (355)
T COG0144 183 AIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPG----GE---KFDRILLDAPCSGTGVIRRDPDVKWR 254 (355)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccc----cC---cCcEEEECCCCCCCcccccCcccccc
Confidence 34799999999999999999999996 488888888766433321 23 5999999986431
Q ss_pred ------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 79 ------------YRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 79 ------------~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
-..+++.+.++|+|||.|++.....
T Consensus 255 ~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 255 RTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 1346677789999999999876655
No 128
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.23 E-value=9.6e-06 Score=51.30 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=62.3
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----chHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----NYRNYRET 85 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----~~~~~~~~ 85 (139)
...+++++|.+++....+++.....+ ..+++++.+|..+..... .. +||+|+++.... ....+++.
T Consensus 20 ~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~---~~d~i~~~~~~~~~~~~~~~~l~~ 89 (107)
T cd02440 20 PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEA------DE---SFDVIISDPPLHHLVEDLARFLEE 89 (107)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhcccc------CC---ceEEEEEccceeehhhHHHHHHHH
Confidence 45789999999999999997544433 357999999998875311 35 899999988643 34667888
Q ss_pred HhhcccCCeEEEEe
Q 044253 86 LMTLFKVGGIVIYD 99 (139)
Q Consensus 86 ~~~lL~~gG~ii~~ 99 (139)
+.+.|++||.+++.
T Consensus 90 ~~~~l~~~g~~~~~ 103 (107)
T cd02440 90 ARRLLKPGGVLVLT 103 (107)
T ss_pred HHHHcCCCCEEEEE
Confidence 88999999999875
No 129
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.22 E-value=4.6e-06 Score=59.96 Aligned_cols=92 Identities=8% Similarity=-0.106 Sum_probs=66.3
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~ 85 (139)
+.+....+|+++|+|+.+++.+++++.. .++++++++|+.+... . .. +||.|+.+++.......+..
T Consensus 30 ~l~~~~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~--~-----~~---~~d~vi~n~Py~~~~~~i~~ 96 (169)
T smart00650 30 ELLERAARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL--P-----KL---QPYKVVGNLPYNISTPILFK 96 (169)
T ss_pred HHHhcCCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc--c-----cc---CCCEEEECCCcccHHHHHHH
Confidence 3444467899999999999999999854 2579999999987621 1 24 69999999987655566666
Q ss_pred Hhh--cccCCeEEEEeCCCCCcccccc
Q 044253 86 LMT--LFKVGGIVIYDNTLWGGTVAMA 110 (139)
Q Consensus 86 ~~~--lL~~gG~ii~~~~~~~~~~~~~ 110 (139)
+.. .+.++|++++..-.....++.|
T Consensus 97 ~l~~~~~~~~~~l~~q~e~a~rl~~~~ 123 (169)
T smart00650 97 LLEEPPAFRDAVLMVQKEVARRLAAKP 123 (169)
T ss_pred HHhcCCCcceEEEEEEHHHhHHhcCCC
Confidence 664 3458888887665444444444
No 130
>PRK04266 fibrillarin; Provisional
Probab=98.20 E-value=5.3e-06 Score=62.79 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=56.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcCCCcc-hHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDAHKDN-YRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~~~~~-~~~~~~~~~~ 88 (139)
.+|+++|++++|++.++++++.. .++.++.+|+.... ..+ .+ +||+||+|..... ....++.+.+
T Consensus 97 g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l------~~---~~D~i~~d~~~p~~~~~~L~~~~r 164 (226)
T PRK04266 97 GVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV------VE---KVDVIYQDVAQPNQAEIAIDNAEF 164 (226)
T ss_pred CeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc------cc---cCCEEEECCCChhHHHHHHHHHHH
Confidence 58999999999999888877643 46899999986421 111 25 7999999875322 2335778889
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
.|+|||.+++.
T Consensus 165 ~LKpGG~lvI~ 175 (226)
T PRK04266 165 FLKDGGYLLLA 175 (226)
T ss_pred hcCCCcEEEEE
Confidence 99999999985
No 131
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.20 E-value=9.4e-06 Score=60.33 Aligned_cols=84 Identities=20% Similarity=0.171 Sum_probs=65.5
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchHHHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYRNYR 83 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~~~~ 83 (139)
.+..+.+++++|.++++++.+++++...+.. ++++.++|+.+..... .. +||+|++.. ...+...++
T Consensus 63 l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~------~~---~~D~i~~~~~l~~~~~~~~~l 132 (224)
T TIGR01983 63 LARLGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG------AK---SFDVVTCMEVLEHVPDPQAFI 132 (224)
T ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC------CC---CccEEEehhHHHhCCCHHHHH
Confidence 3344567999999999999999999887763 6899999988764321 25 899999864 223556788
Q ss_pred HHHhhcccCCeEEEEeC
Q 044253 84 ETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~ 100 (139)
+.+.+.|++||.+++..
T Consensus 133 ~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 133 RACAQLLKPGGILFFST 149 (224)
T ss_pred HHHHHhcCCCcEEEEEe
Confidence 89999999999998754
No 132
>PLN02672 methionine S-methyltransferase
Probab=98.18 E-value=5.3e-06 Score=74.62 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=65.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCC---------------CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVD---------------LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~---------------~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
..+|+++|+|+++++.|++|+..++++ ++++++++|..+.+... .. +||+|+.+|+
T Consensus 142 ~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~------~~---~fDlIVSNPP 212 (1082)
T PLN02672 142 PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN------NI---ELDRIVGCIP 212 (1082)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcccc------CC---ceEEEEECCC
Confidence 468999999999999999999987542 57999999998775321 24 6999999874
Q ss_pred Cc-----------------------------------------chHHHHHHHhhcccCCeEEEEeCCCCCcc
Q 044253 76 KD-----------------------------------------NYRNYRETLMTLFKVGGIVIYDNTLWGGT 106 (139)
Q Consensus 76 ~~-----------------------------------------~~~~~~~~~~~lL~~gG~ii~~~~~~~~~ 106 (139)
+- .|..++..+..+|+|||+++++.....+.
T Consensus 213 YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~ 284 (1082)
T PLN02672 213 QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ 284 (1082)
T ss_pred cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence 20 01334555567999999999986655554
No 133
>PRK06922 hypothetical protein; Provisional
Probab=98.18 E-value=6.4e-06 Score=70.62 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=62.6
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------------
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------------ 76 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------------ 76 (139)
....+|+++|+|+.|++.|+++....+ .+++++++|+.+.-..+. .+ +||+|++....
T Consensus 440 ~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fe-----de---SFDvVVsn~vLH~L~syIp~~g~ 509 (677)
T PRK06922 440 TEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFE-----KE---SVDTIVYSSILHELFSYIEYEGK 509 (677)
T ss_pred CCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccC-----CC---CEEEEEEchHHHhhhhhcccccc
Confidence 346799999999999999999876655 368999999987421122 35 89999976421
Q ss_pred ----cchHHHHHHHhhcccCCeEEEEeCC
Q 044253 77 ----DNYRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 77 ----~~~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.....++..+.+.|+|||.+++.+.
T Consensus 510 ~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 510 KFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred cccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1335678888899999999998654
No 134
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.16 E-value=4.9e-06 Score=65.15 Aligned_cols=81 Identities=5% Similarity=-0.070 Sum_probs=63.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~~~ 85 (139)
..+++++|. +++++.++++++..|+.++++++.+|+++. .+ . .+|+|++.... .....+++.
T Consensus 173 ~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~~-------~---~~D~v~~~~~lh~~~~~~~~~il~~ 239 (306)
T TIGR02716 173 ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY-------P---EADAVLFCRILYSANEQLSTIMCKK 239 (306)
T ss_pred CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--CC-------C---CCCEEEeEhhhhcCChHHHHHHHHH
Confidence 468999998 799999999999999988999999998753 12 3 57998765421 122457888
Q ss_pred HhhcccCCeEEEEeCCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~~ 104 (139)
+.+.|+|||.+++.+..+.
T Consensus 240 ~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 240 AFDAMRSGGRLLILDMVID 258 (306)
T ss_pred HHHhcCCCCEEEEEEeccC
Confidence 9999999999988776554
No 135
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=7e-06 Score=64.37 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=60.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------hHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------YRNY 82 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------~~~~ 82 (139)
..+++++|+|..+++.||+|+..+++.. ..++.+|..+-. .+ +||+|+++|+... -..+
T Consensus 182 ~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~~v---------~~---kfd~IisNPPfh~G~~v~~~~~~~~ 248 (300)
T COG2813 182 QAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYEPV---------EG---KFDLIISNPPFHAGKAVVHSLAQEI 248 (300)
T ss_pred CCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccccc---------cc---cccEEEeCCCccCCcchhHHHHHHH
Confidence 4689999999999999999999999864 378888776653 35 8999999997432 1367
Q ss_pred HHHHhhcccCCeEEEE
Q 044253 83 RETLMTLFKVGGIVIY 98 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~ 98 (139)
+..+.+.|++||-+-+
T Consensus 249 i~~A~~~L~~gGeL~i 264 (300)
T COG2813 249 IAAAARHLKPGGELWI 264 (300)
T ss_pred HHHHHHhhccCCEEEE
Confidence 8888899999998743
No 136
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=4.7e-06 Score=61.35 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=49.9
Q ss_pred Cchhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 3 FNLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 3 ~~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
|++.++..+ .+|++||+|+++++.+++|..+. ..++.++++|+.++ .. ++|.++++|+.
T Consensus 59 La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~----------~~---~~dtvimNPPF 118 (198)
T COG2263 59 LAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDF----------RG---KFDTVIMNPPF 118 (198)
T ss_pred HHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhc----------CC---ccceEEECCCC
Confidence 466666666 68999999999999999999983 36799999999886 45 89999999964
No 137
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.11 E-value=6.8e-06 Score=65.97 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=52.1
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHH---------hhhcccCCCceeEEEEc
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLK---------DEKIHFFFENFDYAFVD 73 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~---------~~~~~~~~~~fD~If~D 73 (139)
|+|+.|....+|++||+++++++.|++|++.+++ ++++++++++.++...+.. ...... .+|+|++|
T Consensus 210 fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~d~vilD 285 (352)
T PF05958_consen 210 FSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSF---KFDAVILD 285 (352)
T ss_dssp CHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCT---TESEEEE-
T ss_pred HHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhc---CCCEEEEc
Confidence 7899998999999999999999999999999999 4799999988765322110 000023 68999999
Q ss_pred CCCcchH-HHHHHH
Q 044253 74 AHKDNYR-NYRETL 86 (139)
Q Consensus 74 ~~~~~~~-~~~~~~ 86 (139)
|+..... ..++.+
T Consensus 286 PPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 286 PPRAGLDEKVIELI 299 (352)
T ss_dssp --TT-SCHHHHHHH
T ss_pred CCCCCchHHHHHHH
Confidence 9865443 344443
No 138
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.10 E-value=1.3e-05 Score=63.69 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=60.3
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhhc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMTL 89 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~l 89 (139)
+|+++|.|+.++..++..-+..+...+++++.+|+.+. +. .. +||+|++-.. ..+....++.+.+.
T Consensus 147 ~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~---~FD~V~s~~vl~H~~dp~~~L~~l~~~ 215 (322)
T PRK15068 147 LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LK---AFDTVFSMGVLYHRRSPLDHLKQLKDQ 215 (322)
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cC---CcCEEEECChhhccCCHHHHHHHHHHh
Confidence 59999999998876655444444345799999998765 21 25 8999998652 23567789999999
Q ss_pred ccCCeEEEEeCCCCC
Q 044253 90 FKVGGIVIYDNTLWG 104 (139)
Q Consensus 90 L~~gG~ii~~~~~~~ 104 (139)
|+|||.++++.....
T Consensus 216 LkpGG~lvl~~~~i~ 230 (322)
T PRK15068 216 LVPGGELVLETLVID 230 (322)
T ss_pred cCCCcEEEEEEEEec
Confidence 999999998765443
No 139
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.10 E-value=1.1e-05 Score=65.48 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=59.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcchHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDNYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~~~~~~~~ 85 (139)
+.+|+++|+|+++++.|+++.. +. .+++..+|+.+. .+ +||.|++-. +..++..+++.
T Consensus 190 g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~---~fD~Ivs~~~~ehvg~~~~~~~l~~ 252 (383)
T PRK11705 190 GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NG---QFDRIVSVGMFEHVGPKNYRTYFEV 252 (383)
T ss_pred CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CC---CCCEEEEeCchhhCChHHHHHHHHH
Confidence 6789999999999999999884 33 388888887543 25 899998643 22345778999
Q ss_pred HhhcccCCeEEEEeCCC
Q 044253 86 LMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~ 102 (139)
+.++|+|||.+++..+.
T Consensus 253 i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 253 VRRCLKPDGLFLLHTIG 269 (383)
T ss_pred HHHHcCCCcEEEEEEcc
Confidence 99999999999986543
No 140
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.10 E-value=1.2e-05 Score=66.45 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=62.4
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYR 80 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~ 80 (139)
..+....+|+++|+++++++.+++. .+..++++++++|+......+. .. +||+|++..... ...
T Consensus 54 ~la~~~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~-----~~---~fD~I~~~~~l~~l~~~~~~ 122 (475)
T PLN02336 54 ELAKKAGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNIS-----DG---SVDLIFSNWLLMYLSDKEVE 122 (475)
T ss_pred HHHhhCCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCC-----CC---CEEEEehhhhHHhCCHHHHH
Confidence 4445567899999999999887653 3334579999999864211121 35 899999976322 135
Q ss_pred HHHHHHhhcccCCeEEEEeCCCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
.+++.+.+.|+|||++++.+..+
T Consensus 123 ~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 123 NLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred HHHHHHHHhcCCCeEEEEEeccC
Confidence 67888889999999999876554
No 141
>PRK08317 hypothetical protein; Provisional
Probab=98.09 E-value=1.4e-05 Score=59.29 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=63.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
..+++++|+|+.+++.++++... ...+++++.+|+... + +. .. +||+|++... ..+....++.+.
T Consensus 44 ~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~-~-~~-----~~---~~D~v~~~~~~~~~~~~~~~l~~~~ 111 (241)
T PRK08317 44 EGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGL-P-FP-----DG---SFDAVRSDRVLQHLEDPARALAEIA 111 (241)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccC-C-CC-----CC---CceEEEEechhhccCCHHHHHHHHH
Confidence 35899999999999999998432 235799999988653 1 11 35 8999998752 235677899999
Q ss_pred hcccCCeEEEEeCCCCCc
Q 044253 88 TLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~~~ 105 (139)
++|+|||.+++....+..
T Consensus 112 ~~L~~gG~l~~~~~~~~~ 129 (241)
T PRK08317 112 RVLRPGGRVVVLDTDWDT 129 (241)
T ss_pred HHhcCCcEEEEEecCCCc
Confidence 999999999987655543
No 142
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.09 E-value=5e-06 Score=63.14 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=58.9
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHH
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRET 85 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~ 85 (139)
..+.+|+++|+|+++++.|+++.. ...++++|+... + +. +. +||+|++... ..+....+..
T Consensus 62 ~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~~-----~~---~fD~V~s~~~l~~~~d~~~~l~~ 125 (251)
T PRK10258 62 ERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-LA-----TA---TFDLAWSNLAVQWCGNLSTALRE 125 (251)
T ss_pred HcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-CC-----CC---cEEEEEECchhhhcCCHHHHHHH
Confidence 346789999999999999998742 246788888663 2 21 35 8999998763 2355678889
Q ss_pred HhhcccCCeEEEEeCC
Q 044253 86 LMTLFKVGGIVIYDNT 101 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~ 101 (139)
+.+.|+|||.+++...
T Consensus 126 ~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 126 LYRVVRPGGVVAFTTL 141 (251)
T ss_pred HHHHcCCCeEEEEEeC
Confidence 9999999999998643
No 143
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.07 E-value=1.8e-05 Score=58.96 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=60.7
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----Ccch
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNY 79 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~ 79 (139)
.+.+....+|+++|+|++++..|++++...+..+++++.++|+... .. +||+|++-.. ....
T Consensus 71 ~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~---~fD~ii~~~~l~~~~~~~~ 137 (219)
T TIGR02021 71 IELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CG---EFDIVVCMDVLIHYPASDM 137 (219)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CC---CcCEEEEhhHHHhCCHHHH
Confidence 3445556789999999999999999998887766899999998764 24 8999986321 1123
Q ss_pred HHHHHHHhhcccCCeEEEEe
Q 044253 80 RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~ 99 (139)
...+..+.+++++++++.+.
T Consensus 138 ~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 138 AKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHHHHHHHHHhCCCEEEEEC
Confidence 44567777788877777664
No 144
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.04 E-value=1.5e-05 Score=65.96 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=59.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcchHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDNYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~~~~~~~~ 85 (139)
..+|++||.|+.+....++.+..++..++|+++++|+.+. ++ .+ +.|+|+... ......+.+..
T Consensus 214 a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v--~l------pe---kvDIIVSElLGsfg~nEl~pE~Lda 282 (448)
T PF05185_consen 214 AVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV--EL------PE---KVDIIVSELLGSFGDNELSPECLDA 282 (448)
T ss_dssp ESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS--CH------SS----EEEEEE---BTTBTTTSHHHHHHH
T ss_pred CeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC--CC------CC---ceeEEEEeccCCccccccCHHHHHH
Confidence 4589999999999999888888999989999999999987 22 35 899999864 22233556777
Q ss_pred HhhcccCCeEEEE
Q 044253 86 LMTLFKVGGIVIY 98 (139)
Q Consensus 86 ~~~lL~~gG~ii~ 98 (139)
..+.|+|||+++-
T Consensus 283 ~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 283 ADRFLKPDGIMIP 295 (448)
T ss_dssp GGGGEEEEEEEES
T ss_pred HHhhcCCCCEEeC
Confidence 7789999999983
No 145
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.04 E-value=1.1e-05 Score=62.76 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=57.1
Q ss_pred hcceeEEeCCccHHHHHHHHHH-HcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----chHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIK-KVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----NYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~-~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----~~~~~~~~ 85 (139)
+..|+++|+|+++.+.+++-++ ..|+..+++++++|+.+.-..+ . .||+||+-+-.. .-.++++.
T Consensus 146 ~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~---~~DvV~lAalVg~~~e~K~~Il~~ 215 (276)
T PF03059_consen 146 GARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------K---EYDVVFLAALVGMDAEPKEEILEH 215 (276)
T ss_dssp --EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG--------------SEEEE-TT-S----SHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------c---cCCEEEEhhhcccccchHHHHHHH
Confidence 4578999999999999999988 6788889999999997653222 4 799999987443 56788999
Q ss_pred HhhcccCCeEEEEe
Q 044253 86 LMTLFKVGGIVIYD 99 (139)
Q Consensus 86 ~~~lL~~gG~ii~~ 99 (139)
+.+.+++|+.+++.
T Consensus 216 l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 216 LAKHMAPGARLVVR 229 (276)
T ss_dssp HHHHS-TTSEEEEE
T ss_pred HHhhCCCCcEEEEe
Confidence 99999999999986
No 146
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.03 E-value=2e-05 Score=62.41 Aligned_cols=82 Identities=13% Similarity=0.066 Sum_probs=59.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~ 88 (139)
.+|+++|.|+.++..++..-+..+...++.+..+++.+. +. .. +||+||+-+. ..+....+..+.+
T Consensus 145 ~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~---~FD~V~s~gvL~H~~dp~~~L~el~r 213 (314)
T TIGR00452 145 KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LY---AFDTVFSMGVLYHRKSPLEHLKQLKH 213 (314)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CC---CcCEEEEcchhhccCCHHHHHHHHHH
Confidence 369999999999887654333333335788888887654 21 25 8999998763 2355678999999
Q ss_pred cccCCeEEEEeCCCCC
Q 044253 89 LFKVGGIVIYDNTLWG 104 (139)
Q Consensus 89 lL~~gG~ii~~~~~~~ 104 (139)
.|+|||.+++......
T Consensus 214 ~LkpGG~Lvletl~i~ 229 (314)
T TIGR00452 214 QLVIKGELVLETLVID 229 (314)
T ss_pred hcCCCCEEEEEEEEec
Confidence 9999999998765443
No 147
>PRK00536 speE spermidine synthase; Provisional
Probab=98.03 E-value=1.7e-05 Score=61.40 Aligned_cols=73 Identities=8% Similarity=0.035 Sum_probs=55.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+|+.||+|++.++.+|+.+... ++ .+|++++.. . .+.. .+ +||+|++|.. ....+++.+.+
T Consensus 95 ~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~~~-----~~---~fDVIIvDs~--~~~~fy~~~~~ 159 (262)
T PRK00536 95 THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LDLD-----IK---KYDLIICLQE--PDIHKIDGLKR 159 (262)
T ss_pred CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hhcc-----CC---cCCEEEEcCC--CChHHHHHHHH
Confidence 48999999999999999965432 34 568998862 2 2211 25 8999999963 33667788999
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
.|++||+++..
T Consensus 160 ~L~~~Gi~v~Q 170 (262)
T PRK00536 160 MLKEDGVFISV 170 (262)
T ss_pred hcCCCcEEEEC
Confidence 99999999974
No 148
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.03 E-value=1.4e-05 Score=56.24 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=56.2
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Cc------chH
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KD------NYR 80 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~------~~~ 80 (139)
+|+++|+.+++++.+++.++..+..+++++++.+=......+. ++ ++|+++.+-+ +. ...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~---~v~~~iFNLGYLPggDk~i~T~~~TTl 72 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EG---PVDAAIFNLGYLPGGDKSITTKPETTL 72 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S-----EEEEEEEESB-CTS-TTSB--HHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cC---CcCEEEEECCcCCCCCCCCCcCcHHHH
Confidence 6899999999999999999999998899999876554322221 24 7999998732 11 124
Q ss_pred HHHHHHhhcccCCeEEEE
Q 044253 81 NYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~ 98 (139)
..++.++++|++||++++
T Consensus 73 ~Al~~al~lL~~gG~i~i 90 (140)
T PF06962_consen 73 KALEAALELLKPGGIITI 90 (140)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHhhccCCEEEE
Confidence 568888999999999986
No 149
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.02 E-value=2.2e-05 Score=58.82 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=63.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEE-EEeCChHHHHHhhHHhhhcccCCCceeEEEEc---CCCcchHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKIN-LMESRALPALDQLLKDEKIHFFFENFDYAFVD---AHKDNYRNYRET 85 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~-~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D---~~~~~~~~~~~~ 85 (139)
++.+||++|.++.|-++|.+.+.+..- .++. ++.+++... +++. +. +||.|+.. +...+..+.+..
T Consensus 98 p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l~-----d~---s~DtVV~TlvLCSve~~~k~L~e 167 (252)
T KOG4300|consen 98 PINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQLA-----DG---SYDTVVCTLVLCSVEDPVKQLNE 167 (252)
T ss_pred CCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-cccc-----cC---CeeeEEEEEEEeccCCHHHHHHH
Confidence 456899999999999999999887744 4566 889988775 5554 56 99999865 345677888899
Q ss_pred HhhcccCCeEEEE
Q 044253 86 LMTLFKVGGIVIY 98 (139)
Q Consensus 86 ~~~lL~~gG~ii~ 98 (139)
+.++|+|||++++
T Consensus 168 ~~rlLRpgG~iif 180 (252)
T KOG4300|consen 168 VRRLLRPGGRIIF 180 (252)
T ss_pred HHHhcCCCcEEEE
Confidence 9999999999986
No 150
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.02 E-value=2.4e-05 Score=63.38 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=61.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
.+|++-|+|+++++.+++|++.+++.+ ++++.++|+...+... .. .||+|=+||- .....+++.+.+.+
T Consensus 75 ~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~------~~---~fD~IDlDPf-GSp~pfldsA~~~v 144 (377)
T PF02005_consen 75 DKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR------QE---RFDVIDLDPF-GSPAPFLDSALQAV 144 (377)
T ss_dssp CEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS------TT----EEEEEE--S-S--HHHHHHHHHHE
T ss_pred CEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc------cc---cCCEEEeCCC-CCccHhHHHHHHHh
Confidence 479999999999999999999999987 7999999999987421 46 8999999984 34667999999999
Q ss_pred cCCeEEEEe
Q 044253 91 KVGGIVIYD 99 (139)
Q Consensus 91 ~~gG~ii~~ 99 (139)
+.||++.+.
T Consensus 145 ~~gGll~vT 153 (377)
T PF02005_consen 145 KDGGLLCVT 153 (377)
T ss_dssp EEEEEEEEE
T ss_pred hcCCEEEEe
Confidence 999999884
No 151
>PHA03412 putative methyltransferase; Provisional
Probab=98.00 E-value=3.2e-05 Score=59.00 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=65.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----c-------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----N------- 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~------- 78 (139)
..+|++||+|+.+++.|++|+. ++.++++|+.... + .. +||+|+++|+.. +
T Consensus 76 ~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~--~------~~---~FDlIIsNPPY~~~~~~d~~ar~~g 138 (241)
T PHA03412 76 PREIVCVELNHTYYKLGKRIVP------EATWINADALTTE--F------DT---LFDMAISNPPFGKIKTSDFKGKYTG 138 (241)
T ss_pred CcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc--c------cC---CccEEEECCCCCCccccccCCcccc
Confidence 4589999999999999998852 4789999987542 2 35 899999998642 1
Q ss_pred ---hHHHHHHHhhcccCCeEEEEeCC---CCCcccccccccCchhhhhchHHHHHHHHH
Q 044253 79 ---YRNYRETLMTLFKVGGIVIYDNT---LWGGTVAMAEEQVPEILRSTRQPNWNLDKL 131 (139)
Q Consensus 79 ---~~~~~~~~~~lL~~gG~ii~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (139)
...+++.+.+++++|+.|+-.++ .++|...-.... ....++..+|.+.
T Consensus 139 ~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~-----~~~~~~~~~~~~~ 192 (241)
T PHA03412 139 AEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDE-----STTSSKCKKFLDE 192 (241)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeecc-----CcccHHHHHHHHh
Confidence 23466777787777776543333 334443332211 3455666666654
No 152
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.00 E-value=6.6e-05 Score=58.62 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=63.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
...++++|+++..+...++|+++.|.. ++.+.+.|+........ .. .||.|++|++...
T Consensus 110 ~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~-----~~---~fd~VlvDaPCSg~G~i~r~p~~~~ 180 (283)
T PF01189_consen 110 KGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKP-----ES---KFDRVLVDAPCSGLGTIRRNPDIKW 180 (283)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHH-----TT---TEEEEEEECSCCCGGGTTTCTTHHH
T ss_pred hhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccccc-----cc---ccchhhcCCCccchhhhhhccchhh
Confidence 468999999999999999999999985 68888899988755432 24 5999999985431
Q ss_pred -------------hHHHHHHHhhcc----cCCeEEEEeCC
Q 044253 79 -------------YRNYRETLMTLF----KVGGIVIYDNT 101 (139)
Q Consensus 79 -------------~~~~~~~~~~lL----~~gG~ii~~~~ 101 (139)
-..+++.+.+++ +|||++++...
T Consensus 181 ~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 181 RRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp HE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred cccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 024567777899 99999997543
No 153
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.00 E-value=1.9e-05 Score=58.25 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=60.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~~~~~~~~~ 88 (139)
.+++++|+++.++..+++++. ..++++++.+|+.+.. .. .+ +||+|++.. .......+++.+.+
T Consensus 65 ~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~~-----~~---~~D~i~~~~~~~~~~~~~~~l~~~~~ 131 (223)
T TIGR01934 65 GKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--FE-----DN---SFDAVTIAFGLRNVTDIQKALREMYR 131 (223)
T ss_pred ceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--CC-----CC---cEEEEEEeeeeCCcccHHHHHHHHHH
Confidence 489999999999999999876 3357999999998752 11 35 899998754 23356678889999
Q ss_pred cccCCeEEEEeCC
Q 044253 89 LFKVGGIVIYDNT 101 (139)
Q Consensus 89 lL~~gG~ii~~~~ 101 (139)
+|+|||++++-+.
T Consensus 132 ~L~~gG~l~~~~~ 144 (223)
T TIGR01934 132 VLKPGGRLVILEF 144 (223)
T ss_pred HcCCCcEEEEEEe
Confidence 9999999987543
No 154
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.99 E-value=1.6e-05 Score=63.56 Aligned_cols=75 Identities=11% Similarity=-0.014 Sum_probs=58.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
..+|+++|.|+++++.|+++... .+++++.+|+.+. + +. .+ +||+|++.... .+....++.+.
T Consensus 137 ~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~~-----~~---sFDvVIs~~~L~~~~d~~~~L~e~~ 202 (340)
T PLN02490 137 AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-FP-----TD---YADRYVSAGSIEYWPDPQRGIKEAY 202 (340)
T ss_pred CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-CC-----CC---ceeEEEEcChhhhCCCHHHHHHHHH
Confidence 46899999999999999998642 3588999998764 2 11 35 89999986532 24566889999
Q ss_pred hcccCCeEEEEe
Q 044253 88 TLFKVGGIVIYD 99 (139)
Q Consensus 88 ~lL~~gG~ii~~ 99 (139)
+.|+|||.+++-
T Consensus 203 rvLkPGG~LvIi 214 (340)
T PLN02490 203 RVLKIGGKACLI 214 (340)
T ss_pred HhcCCCcEEEEE
Confidence 999999998764
No 155
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.97 E-value=6.3e-06 Score=62.05 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=59.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
++.++++|.|++|++.|++.+ .++++..+|....-+ +. +.|++|.++.. .+...++..+.
T Consensus 54 ~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------~~---~~dllfaNAvlqWlpdH~~ll~rL~ 116 (257)
T COG4106 54 DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------EQ---PTDLLFANAVLQWLPDHPELLPRLV 116 (257)
T ss_pred CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------CC---ccchhhhhhhhhhccccHHHHHHHH
Confidence 678999999999999997654 468999999988732 46 89999999843 34567899999
Q ss_pred hcccCCeEEEEe
Q 044253 88 TLFKVGGIVIYD 99 (139)
Q Consensus 88 ~lL~~gG~ii~~ 99 (139)
..|.|||++.+.
T Consensus 117 ~~L~Pgg~LAVQ 128 (257)
T COG4106 117 SQLAPGGVLAVQ 128 (257)
T ss_pred HhhCCCceEEEE
Confidence 999999999873
No 156
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.95 E-value=2.8e-05 Score=62.79 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=59.5
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----------chHH
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----------NYRN 81 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----------~~~~ 81 (139)
.++++|+|+.+++.|+.|.+.+|+.+.|++.++|+..+-.. .+ .+|+|+++|++. -|..
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~---~~gvvI~NPPYGeRlg~~~~v~~LY~~ 325 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LE---EYGVVISNPPYGERLGSEALVAKLYRE 325 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CC---cCCEEEeCCCcchhcCChhhHHHHHHH
Confidence 37799999999999999999999999999999999876322 14 799999999753 2344
Q ss_pred HHHHHhhcccCCeEEEE
Q 044253 82 YRETLMTLFKVGGIVIY 98 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~ 98 (139)
+-+.+.+.++.-+..++
T Consensus 326 fg~~lk~~~~~ws~~v~ 342 (381)
T COG0116 326 FGRTLKRLLAGWSRYVF 342 (381)
T ss_pred HHHHHHHHhcCCceEEE
Confidence 44555567776666665
No 157
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.93 E-value=2.7e-05 Score=61.85 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=47.6
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKV-EVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
...+.+++++|+|+.+++.|++|++.+ ++.+++++++ .+.......+... .+ .||+|+++|+.
T Consensus 135 ~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~---~~---~fDlivcNPPf 199 (321)
T PRK11727 135 HEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHK---NE---RFDATLCNPPF 199 (321)
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccccc---CC---ceEEEEeCCCC
Confidence 334678999999999999999999999 7988999975 4444443322111 35 89999999874
No 158
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.92 E-value=2.6e-05 Score=57.92 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=59.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
..+++++|+++++++.+++++. ++++++.+|+.+.. .. .+ +||+|++.... .+....++.+.
T Consensus 58 ~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~--~~-----~~---~fD~vi~~~~l~~~~~~~~~l~~~~ 122 (240)
T TIGR02072 58 QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP--LE-----DS---SFDLIVSNLALQWCDDLSQALSELA 122 (240)
T ss_pred CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC--CC-----CC---ceeEEEEhhhhhhccCHHHHHHHHH
Confidence 3568999999999999988654 36889999987642 11 35 89999987532 24567888999
Q ss_pred hcccCCeEEEEeCC
Q 044253 88 TLFKVGGIVIYDNT 101 (139)
Q Consensus 88 ~lL~~gG~ii~~~~ 101 (139)
++|++||.+++...
T Consensus 123 ~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 123 RVLKPGGLLAFSTF 136 (240)
T ss_pred HHcCCCcEEEEEeC
Confidence 99999999998643
No 159
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.92 E-value=6e-05 Score=60.81 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=60.4
Q ss_pred cceeEEeCCccHHHHHHHHH--HH---cCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------c
Q 044253 12 YFIVAIDVSRESSETGLPII--KK---VEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------N 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~--~~---~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~ 78 (139)
.+|+.||.||+|++.++++. +. ..+ +.|++++..|+..+++.. .+ .||.|++|-+-+ -
T Consensus 314 ~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a------~~---~fD~vIVDl~DP~tps~~rl 384 (508)
T COG4262 314 EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA------AD---MFDVVIVDLPDPSTPSIGRL 384 (508)
T ss_pred ceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh------cc---cccEEEEeCCCCCCcchhhh
Confidence 47999999999999999553 22 233 568999999999999765 35 899999985321 1
Q ss_pred h-HHHHHHHhhcccCCeEEEEe
Q 044253 79 Y-RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ~-~~~~~~~~~lL~~gG~ii~~ 99 (139)
| .++...+.+.|+++|.+++.
T Consensus 385 YS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 385 YSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred hhHHHHHHHHHhcCcCceEEEe
Confidence 3 34555667899999999874
No 160
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.91 E-value=4.2e-05 Score=56.60 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=65.7
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc---CC-Cc----
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD---AH-KD---- 77 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D---~~-~~---- 77 (139)
+.......+++||++...+..|.+.+...++ .++.++++|+...+..+.. .+ ++|.|++. |. +.
T Consensus 36 A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~----~~---~v~~i~i~FPDPWpK~rH~k 107 (195)
T PF02390_consen 36 AKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFP----PG---SVDRIYINFPDPWPKKRHHK 107 (195)
T ss_dssp HHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHST----TT---SEEEEEEES-----SGGGGG
T ss_pred HHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhccc----CC---chheEEEeCCCCCcccchhh
Confidence 3344467899999999999999999999998 5899999999998877642 35 89999985 31 11
Q ss_pred ---chHHHHHHHhhcccCCeEEEE
Q 044253 78 ---NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 78 ---~~~~~~~~~~~lL~~gG~ii~ 98 (139)
....+++.+.+.|++||.|.+
T Consensus 108 rRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 108 RRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp GSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred hhcCCchHHHHHHHHcCCCCEEEE
Confidence 136788999999999999965
No 161
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.89 E-value=6.4e-05 Score=55.96 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=56.4
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cch
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNY 79 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~ 79 (139)
...+..+.+|+++|+|+++++.|++++...+..+++++..+|.. .. .+ +||+|++.... ...
T Consensus 79 ~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~---~fD~v~~~~~l~~~~~~~~ 145 (230)
T PRK07580 79 IPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LG---RFDTVVCLDVLIHYPQEDA 145 (230)
T ss_pred HHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cC---CcCEEEEcchhhcCCHHHH
Confidence 34445567899999999999999999988887678999999932 11 35 89999975421 123
Q ss_pred HHHHHHHhhcccCCeEEEE
Q 044253 80 RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~ 98 (139)
...++.+.++++.++++.+
T Consensus 146 ~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 146 ARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred HHHHHHHHhhcCCeEEEEE
Confidence 3455566566554444443
No 162
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.88 E-value=1.3e-05 Score=61.92 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=57.1
Q ss_pred hcceeEEeCCccHHHHHHHHH------HHc--------------------CCCCcEEEEeCChHHHHHhhHHhhhcccCC
Q 044253 11 IYFIVAIDVSRESSETGLPII------KKV--------------------EVDLKINLMESRALPALDQLLKDEKIHFFF 64 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~------~~~--------------------g~~~~i~~~~~da~~~l~~~~~~~~~~~~~ 64 (139)
..+|+++|+|+++++.|++.+ +.. ++.+++++.++|+.+... . .+
T Consensus 132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~--~-----~~-- 202 (264)
T smart00138 132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP--P-----LG-- 202 (264)
T ss_pred CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC--c-----cC--
Confidence 468999999999999999853 110 122468888888876421 1 35
Q ss_pred CceeEEEEcCC-----CcchHHHHHHHhhcccCCeEEEEeC
Q 044253 65 ENFDYAFVDAH-----KDNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 65 ~~fD~If~D~~-----~~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
+||+|++--. .......++.+.+.|+|||++++..
T Consensus 203 -~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 203 -DFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred -CCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 8999998431 1223467888999999999999853
No 163
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.87 E-value=2.7e-05 Score=60.48 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=63.8
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe----CChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME----SRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---- 77 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~----~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---- 77 (139)
.+...-..|++||+|+.++..|.+|...+++.+++.+++ +|...-.+.+ .+ ++|+++.+|++-
T Consensus 167 l~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~------~~---~~dllvsNPPYI~~dD 237 (328)
T KOG2904|consen 167 LHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLL------EG---KIDLLVSNPPYIRKDD 237 (328)
T ss_pred HhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccc------cC---ceeEEecCCCcccccc
Confidence 334446789999999999999999999999999999984 4444332221 35 899999987531
Q ss_pred ----------------------c---hHHHHHHHhhcccCCeEEEEeCC
Q 044253 78 ----------------------N---YRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 78 ----------------------~---~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
. +..++..+-++|++||.+.++-.
T Consensus 238 ~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 238 NRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred hhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 0 12344455589999999988755
No 164
>PHA03411 putative methyltransferase; Provisional
Probab=97.86 E-value=4.1e-05 Score=59.61 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=40.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
..+|+++|+|+.+++.+++++ .+++++++|+.++.. .. +||+|+++++.
T Consensus 88 ~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~---kFDlIIsNPPF 136 (279)
T PHA03411 88 PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NE---KFDVVISNPPF 136 (279)
T ss_pred CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cC---CCcEEEEcCCc
Confidence 468999999999999999874 268999999987642 35 89999999854
No 165
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.79 E-value=3e-05 Score=58.78 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=61.1
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHH------H-----cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIK------K-----VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~------~-----~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
..|..+.+|+++|+|+.+++.+.+... . .--...++++++|.++. +..... .. +||+|+--+
T Consensus 60 ~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l-~~~~~~---~~---~fD~VyDra 132 (226)
T PRK13256 60 FFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL-PKIANN---LP---VFDIWYDRG 132 (226)
T ss_pred HHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC-Cccccc---cC---CcCeeeeeh
Confidence 456678899999999999999865210 0 00024699999999986 211000 24 799987543
Q ss_pred -----CCcchHHHHHHHhhcccCCeEEEEeCCC
Q 044253 75 -----HKDNYRNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 75 -----~~~~~~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
+...-..|.+.+..+|+|||.++.-...
T Consensus 133 ~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 133 AYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred hHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 2233467888999999999998875443
No 166
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.79 E-value=0.00016 Score=56.80 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=58.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~ 85 (139)
..+++++|+|++|++.|++++....-..++..+++|+.+.++... +.. .. ...+++++.... ....+++.
T Consensus 88 ~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~-~~~-~~---~~~~~~~gs~~~~~~~~e~~~~L~~ 162 (301)
T TIGR03438 88 PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP-EPA-AG---RRLGFFPGSTIGNFTPEEAVAFLRR 162 (301)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc-ccc-cC---CeEEEEecccccCCCHHHHHHHHHH
Confidence 578999999999999999998754322357889999987543221 000 01 233455554221 23457888
Q ss_pred HhhcccCCeEEEEeCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~ 103 (139)
+.+.|+|||.+++.--+.
T Consensus 163 i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 163 IRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred HHHhcCCCCEEEEeccCC
Confidence 889999999999864444
No 167
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.75 E-value=8.1e-05 Score=64.74 Aligned_cols=56 Identities=7% Similarity=-0.043 Sum_probs=47.7
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
+++++|+|+++++.|++|+..+|+.+++++.++|+.+...... .+ +||+|+++|++
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-----~~---~~d~IvtNPPY 313 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-----KG---PTGLVISNPPY 313 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-----cC---CCCEEEECCCC
Confidence 6999999999999999999999998889999999988632110 24 69999999975
No 168
>PTZ00146 fibrillarin; Provisional
Probab=97.74 E-value=0.00012 Score=57.42 Aligned_cols=78 Identities=18% Similarity=0.063 Sum_probs=52.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH-HHHHHHhhcc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR-NYRETLMTLF 90 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~-~~~~~~~~lL 90 (139)
.+|++||+++++.+...+..... .++.++.+|+..... +... .+ +||+||+|....+.. .++..+...|
T Consensus 158 G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~-y~~~---~~---~vDvV~~Dva~pdq~~il~~na~r~L 227 (293)
T PTZ00146 158 GVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK-YRML---VP---MVDVIFADVAQPDQARIVALNAQYFL 227 (293)
T ss_pred CEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh-hhcc---cC---CCCEEEEeCCCcchHHHHHHHHHHhc
Confidence 47999999988665554443322 468899999864311 1100 24 799999998644333 3445677899
Q ss_pred cCCeEEEEe
Q 044253 91 KVGGIVIYD 99 (139)
Q Consensus 91 ~~gG~ii~~ 99 (139)
+|||.+++.
T Consensus 228 KpGG~~vI~ 236 (293)
T PTZ00146 228 KNGGHFIIS 236 (293)
T ss_pred cCCCEEEEE
Confidence 999999983
No 169
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=97.74 E-value=0.00036 Score=52.39 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=67.0
Q ss_pred chhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChH-HHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253 4 NLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRAL-PALDQLLKDEKIHFFFENFDYAFVDAHKDNYR 80 (139)
Q Consensus 4 ~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~-~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~ 80 (139)
||+.|.+ +.++++|-.+.+.+...++.+...|..+.++|+.++.. +.++.+ . ..|++++|+...++.
T Consensus 60 aLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-------~---~iDF~vVDc~~~d~~ 129 (218)
T PF07279_consen 60 ALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-------K---GIDFVVVDCKREDFA 129 (218)
T ss_pred HHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-------c---CCCEEEEeCCchhHH
Confidence 4444444 67899999999999999999998998878899999854 566654 4 699999999877777
Q ss_pred -HHHHHHhhcccCCeEEEEeCCCC
Q 044253 81 -NYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 81 -~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
.+|+.+ ++=..|.+++..|...
T Consensus 130 ~~vl~~~-~~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 130 ARVLRAA-KLSPRGAVVVCYNAFS 152 (218)
T ss_pred HHHHHHh-ccCCCceEEEEecccc
Confidence 766653 3334566666677755
No 170
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.72 E-value=0.00028 Score=51.88 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=63.1
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
++...+++.+|.+..-+...+.-....|+. +++++++.+.+ ... .. +||+|++-+-. ....+++.+.
T Consensus 69 ~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~~------~~---~fd~v~aRAv~-~l~~l~~~~~ 135 (184)
T PF02527_consen 69 ARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PEY------RE---SFDVVTARAVA-PLDKLLELAR 135 (184)
T ss_dssp H-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TTT------TT----EEEEEEESSS-SHHHHHHHHG
T ss_pred hCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--ccc------CC---CccEEEeehhc-CHHHHHHHHH
Confidence 345678999999999999999999999995 79999999988 121 36 89999998854 4677889999
Q ss_pred hcccCCeEEEE
Q 044253 88 TLFKVGGIVIY 98 (139)
Q Consensus 88 ~lL~~gG~ii~ 98 (139)
+++++||.+++
T Consensus 136 ~~l~~~G~~l~ 146 (184)
T PF02527_consen 136 PLLKPGGRLLA 146 (184)
T ss_dssp GGEEEEEEEEE
T ss_pred HhcCCCCEEEE
Confidence 99999999885
No 171
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.70 E-value=5.3e-05 Score=55.83 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=65.6
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEE---------EcC
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAF---------VDA 74 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If---------~D~ 74 (139)
.|...-.....++||-|+++++.|+...+..++.+.|++.+.|.... ... .. +||+|. +.|
T Consensus 84 ~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~-----~~---qfdlvlDKGT~DAisLs~ 153 (227)
T KOG1271|consen 84 QLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFL-----SG---QFDLVLDKGTLDAISLSP 153 (227)
T ss_pred HHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--ccc-----cc---ceeEEeecCceeeeecCC
Confidence 34444445569999999999999999999999988899999998764 221 24 677775 222
Q ss_pred C--CcchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 75 H--KDNYRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 75 ~--~~~~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
. .....-|+..+.++|+|||++++....|
T Consensus 154 d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 154 DGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred CCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 2 1222446778889999999999865555
No 172
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.70 E-value=3.7e-05 Score=57.95 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=57.2
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHH------cC-----CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKK------VE-----VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~------~g-----~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D 73 (139)
+..|..+.+|+++|+|+.+++.+.+.-.. .+ -.++|+++++|.++.-+.. .+ +||+|+=-
T Consensus 53 ~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~------~g---~fD~iyDr 123 (218)
T PF05724_consen 53 LWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED------VG---KFDLIYDR 123 (218)
T ss_dssp HHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC------HH---SEEEEEEC
T ss_pred HHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh------cC---CceEEEEe
Confidence 34566788999999999999998432111 01 0246899999999853221 24 79999843
Q ss_pred C-----CCcchHHHHHHHhhcccCCeEEEE
Q 044253 74 A-----HKDNYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 74 ~-----~~~~~~~~~~~~~~lL~~gG~ii~ 98 (139)
+ +...-.+|.+.+..+|+|||.+++
T Consensus 124 ~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 124 TFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 2 223456788999999999999543
No 173
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.66 E-value=0.0001 Score=55.07 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=41.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
...+|+++|+++.-++.|+++++..|+.++++++.+|.++.++. .+ ..|.|++-+
T Consensus 20 ~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e---~~d~ivIAG 74 (205)
T PF04816_consen 20 KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GE---DVDTIVIAG 74 (205)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG------EEEEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CC---CCCEEEEec
Confidence 44589999999999999999999999999999999999987753 23 478888753
No 174
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.59 E-value=0.00061 Score=51.72 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=66.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE---cCCCc--------ch
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV---DAHKD--------NY 79 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~---D~~~~--------~~ 79 (139)
....++||+....+..|.+.+.+.++. ++.++++||...+..+.. ++ +.|-|++ ||... -.
T Consensus 72 ~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~---sl~~I~i~FPDPWpKkRH~KRRl~~ 143 (227)
T COG0220 72 EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DG---SLDKIYINFPDPWPKKRHHKRRLTQ 143 (227)
T ss_pred CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CC---CeeEEEEECCCCCCCccccccccCC
Confidence 346899999999999999999999995 899999999999987643 35 7888887 45211 24
Q ss_pred HHHHHHHhhcccCCeEEEE
Q 044253 80 RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~ 98 (139)
..+++.+.+.|++||.|.+
T Consensus 144 ~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 144 PEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred HHHHHHHHHHccCCCEEEE
Confidence 6788899999999999976
No 175
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.56 E-value=0.00011 Score=54.92 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=59.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRETL 86 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~~ 86 (139)
..+|++||++....+... ++..++.++|++++||..+. +.+.....+ .. ...+|+.|+.+ .+...-++..
T Consensus 60 ~~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~-~~---~~vlVilDs~H~~~hvl~eL~~y 133 (206)
T PF04989_consen 60 KGKVIGIDIDIRPHNRKA--IESHPMSPRITFIQGDSIDPEIVDQVRELAS-PP---HPVLVILDSSHTHEHVLAELEAY 133 (206)
T ss_dssp --EEEEEES-GTT--S-G--GGG----TTEEEEES-SSSTHHHHTSGSS--------SSEEEEESS----SSHHHHHHHH
T ss_pred CceEEEEeCCcchhchHH--HhhccccCceEEEECCCCCHHHHHHHHHhhc-cC---CceEEEECCCccHHHHHHHHHHh
Confidence 368999999766554332 33456668999999997643 222211000 12 46699999963 3456667888
Q ss_pred hhcccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253 87 MTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI 138 (139)
Q Consensus 87 ~~lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (139)
.+++++|+++|+.|..+..........-| ............++++.+|+|
T Consensus 134 ~plv~~G~Y~IVeDt~~~~~~~~~~~~~~--w~~g~~p~~av~~fL~~~~~f 183 (206)
T PF04989_consen 134 APLVSPGSYLIVEDTIIEDWPESWFPDRP--WGPGNNPKTAVKEFLAEHPDF 183 (206)
T ss_dssp HHT--TT-EEEETSHHHHHHHHS---------------HHHHHHHHHTTTTE
T ss_pred CccCCCCCEEEEEeccccccccccccccc--hhhhhHHHHHHHHHHHHCCCc
Confidence 89999999999999887664444332211 111222344455556666654
No 176
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00015 Score=60.38 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=64.7
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCcee-EEEEcCCCcchH-
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFD-YAFVDAHKDNYR- 80 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD-~If~D~~~~~~~- 80 (139)
|+|.+|++..+|++||++++++..|++|...+|+. +.+|++|.+.+.++.+.... .. +=+ ++++|++.....
T Consensus 397 iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~--~~---~~~~v~iiDPpR~Glh~ 470 (534)
T KOG2187|consen 397 IGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTPC--CD---SETLVAIIDPPRKGLHM 470 (534)
T ss_pred eehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhcccC--CC---CCceEEEECCCcccccH
Confidence 78999999999999999999999999999999995 79999999988877664220 11 334 788999765543
Q ss_pred HHHHHHhhcccCCeEE
Q 044253 81 NYRETLMTLFKVGGIV 96 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~i 96 (139)
.++..+...-++--.+
T Consensus 471 ~~ik~l~~~~~~~rlv 486 (534)
T KOG2187|consen 471 KVIKALRAYKNPRRLV 486 (534)
T ss_pred HHHHHHHhccCccceE
Confidence 3444444433333333
No 177
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.53 E-value=0.00016 Score=55.12 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=48.4
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHH
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNY 82 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~ 82 (139)
++.+....+|+.+|+|+..++..++..++.|+. ++.++.|.+..|+.-. .+ +||++|.||+.. ...-+
T Consensus 61 ~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~---~fD~f~TDPPyT~~G~~LF 130 (243)
T PF01861_consen 61 LALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RG---KFDVFFTDPPYTPEGLKLF 130 (243)
T ss_dssp HHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS----BSEEEE---SSHHHHHHH
T ss_pred HHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hc---CCCEEEeCCCCCHHHHHHH
Confidence 334444678999999999999999999999985 9999999999887521 24 899999999753 23445
Q ss_pred HHHHhhcccCCe
Q 044253 83 RETLMTLFKVGG 94 (139)
Q Consensus 83 ~~~~~~lL~~gG 94 (139)
+......|+..|
T Consensus 131 lsRgi~~Lk~~g 142 (243)
T PF01861_consen 131 LSRGIEALKGEG 142 (243)
T ss_dssp HHHHHHTB-STT
T ss_pred HHHHHHHhCCCC
Confidence 666777777766
No 178
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.52 E-value=0.00017 Score=50.29 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=51.3
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHH
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRE 84 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~ 84 (139)
+..+.+++++|+++.+++. . +.....-+.... ... .+ +||+|++... ..+...+++
T Consensus 41 ~~~~~~~~g~D~~~~~~~~---------~--~~~~~~~~~~~~-~~~------~~---~fD~i~~~~~l~~~~d~~~~l~ 99 (161)
T PF13489_consen 41 AKRGFEVTGVDISPQMIEK---------R--NVVFDNFDAQDP-PFP------DG---SFDLIICNDVLEHLPDPEEFLK 99 (161)
T ss_dssp HHTTSEEEEEESSHHHHHH---------T--TSEEEEEECHTH-HCH------SS---SEEEEEEESSGGGSSHHHHHHH
T ss_pred HHhCCEEEEEECCHHHHhh---------h--hhhhhhhhhhhh-hcc------cc---chhhHhhHHHHhhcccHHHHHH
Confidence 4456699999999999998 1 122222222221 111 46 8999998753 234677899
Q ss_pred HHhhcccCCeEEEEeCCCC
Q 044253 85 TLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~~~~ 103 (139)
.+.++|+|||++++.....
T Consensus 100 ~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 100 ELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHCEEEEEEEEEEEEBT
T ss_pred HHHHhcCCCCEEEEEEcCC
Confidence 9999999999999876553
No 179
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.45 E-value=0.00044 Score=54.84 Aligned_cols=81 Identities=10% Similarity=-0.013 Sum_probs=53.9
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY 79 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~ 79 (139)
++..+..+.+|+++|+|++|++.|+++....+. ..++++..+|+... .+ +||+|++-....++
T Consensus 159 a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~~---~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 159 AIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------SG---KYDTVTCLDVLIHY 225 (315)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------CC---CcCEEEEcCEEEec
Confidence 345556678999999999999999999876522 24688998887542 35 89999864321112
Q ss_pred -----HHHHHHHhhcccCCeEEEE
Q 044253 80 -----RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 80 -----~~~~~~~~~lL~~gG~ii~ 98 (139)
...+..+. .+.+||+++.
T Consensus 226 p~~~~~~ll~~l~-~l~~g~liIs 248 (315)
T PLN02585 226 PQDKADGMIAHLA-SLAEKRLIIS 248 (315)
T ss_pred CHHHHHHHHHHHH-hhcCCEEEEE
Confidence 22344444 4567777664
No 180
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.45 E-value=0.00065 Score=53.30 Aligned_cols=91 Identities=20% Similarity=0.181 Sum_probs=70.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------hHHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------YRNYRET 85 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------~~~~~~~ 85 (139)
.+|...|.|+..++..++.++..|+.+-++|.++|+++.- .+..- .. ..+++++.+-... ....+..
T Consensus 162 ~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~~l---~p---~P~l~iVsGL~ElF~Dn~lv~~sl~g 234 (311)
T PF12147_consen 162 DSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLAAL---DP---APTLAIVSGLYELFPDNDLVRRSLAG 234 (311)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-Hhhcc---CC---CCCEEEEecchhhCCcHHHHHHHHHH
Confidence 5789999999999999999999999887899999999862 22211 23 6899999874332 2334666
Q ss_pred HhhcccCCeEEEEeCCCCCccccc
Q 044253 86 LMTLFKVGGIVIYDNTLWGGTVAM 109 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~~~~~~~ 109 (139)
+...+.|||++|+.+--||..+-+
T Consensus 235 l~~al~pgG~lIyTgQPwHPQle~ 258 (311)
T PF12147_consen 235 LARALEPGGYLIYTGQPWHPQLEM 258 (311)
T ss_pred HHHHhCCCcEEEEcCCCCCcchHH
Confidence 778999999999988888765543
No 181
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=97.40 E-value=0.00026 Score=54.38 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHHHHHHHhhcccCCeEEEEeC
Q 044253 23 SSETGLPIIKKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 23 ~~~~Ar~n~~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
..+..++|+...|+ .++++++.|...+.++... .+ ++-++.+|++. ......++.+.+.|.+||+|++|+
T Consensus 141 s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p-----~~---~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 141 SLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP-----IE---RIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp HHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T-----T-----EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CHHHHHHHHHHcCCCcccEEEECCcchhhhccCC-----Cc---cEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 46677788887776 5689999999999887543 35 78899999863 223456788889999999999999
Q ss_pred CCC
Q 044253 101 TLW 103 (139)
Q Consensus 101 ~~~ 103 (139)
...
T Consensus 213 Y~~ 215 (248)
T PF05711_consen 213 YGH 215 (248)
T ss_dssp TTT
T ss_pred CCC
Confidence 665
No 182
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.39 E-value=0.00014 Score=56.17 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=50.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+++++|+|+++++.|+++. .++++..+|+.+. + +. ++ +||+|+.-... ..++.+.+.|+
T Consensus 113 ~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~~-----~~---sfD~I~~~~~~----~~~~e~~rvLk 172 (272)
T PRK11088 113 MQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-FA-----DQ---SLDAIIRIYAP----CKAEELARVVK 172 (272)
T ss_pred CeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-Cc-----CC---ceeEEEEecCC----CCHHHHHhhcc
Confidence 36899999999999998753 3578899988753 2 21 35 89999974321 23567788999
Q ss_pred CCeEEEEe
Q 044253 92 VGGIVIYD 99 (139)
Q Consensus 92 ~gG~ii~~ 99 (139)
|||++++-
T Consensus 173 pgG~li~~ 180 (272)
T PRK11088 173 PGGIVITV 180 (272)
T ss_pred CCCEEEEE
Confidence 99999863
No 183
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.38 E-value=0.00011 Score=54.50 Aligned_cols=82 Identities=7% Similarity=0.065 Sum_probs=62.5
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---C--Ccc
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---H--KDN 78 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~--~~~ 78 (139)
+.-+|.+..+|++||.||.....|++|++..|+ ++++++.||++.+ .+ + ..|.|++.- . ...
T Consensus 47 s~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y--~f-------e---~ADvvicEmlDTaLi~E~ 113 (252)
T COG4076 47 SVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDY--DF-------E---NADVVICEMLDTALIEEK 113 (252)
T ss_pred HHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccc--cc-------c---ccceeHHHHhhHHhhccc
Confidence 334555677999999999999999999988887 5899999999987 22 3 688888642 1 111
Q ss_pred hHHHHHHHhhcccCCeEEEE
Q 044253 79 YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~ 98 (139)
....+..+++.|+.++.++-
T Consensus 114 qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 114 QVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred ccHHHHHHHHHhhcCCcccc
Confidence 23467778889999998874
No 184
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.38 E-value=0.0014 Score=51.62 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=63.7
Q ss_pred ceeEEeCCccHHHHHHHHHHH--cCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHHH
Q 044253 13 FIVAIDVSRESSETGLPIIKK--VEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRNY 82 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~--~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~~ 82 (139)
.+..+|++...++..++.+.. .|+ ..++.++-||...+++..+ +. +||+|++|..-. .-..+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-----~~---~~dVii~dssdpvgpa~~lf~~~~ 218 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-----EN---PFDVIITDSSDPVGPACALFQKPY 218 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-----cC---CceEEEEecCCccchHHHHHHHHH
Confidence 588999999999999999875 466 4689999999999988764 46 899999987422 12457
Q ss_pred HHHHhhcccCCeEEEE
Q 044253 83 RETLMTLFKVGGIVIY 98 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~ 98 (139)
++.+.+.|++||+++.
T Consensus 219 ~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 219 FGLVLDALKGDGVVCT 234 (337)
T ss_pred HHHHHHhhCCCcEEEE
Confidence 8888899999999975
No 185
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.38 E-value=0.00027 Score=53.18 Aligned_cols=105 Identities=10% Similarity=0.074 Sum_probs=67.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcchHHHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDNYRNYRETL 86 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~~~~~~~~~ 86 (139)
.+|..||..+..++.|++.+... .....++++...+++-+. .. +||+|.+-= .-.+...+++.+
T Consensus 79 ~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~-------~~---~YDlIW~QW~lghLTD~dlv~fL~RC 147 (218)
T PF05891_consen 79 DEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE-------EG---KYDLIWIQWCLGHLTDEDLVAFLKRC 147 (218)
T ss_dssp SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-----------TT----EEEEEEES-GGGS-HHHHHHHHHHH
T ss_pred CEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC-------CC---cEeEEEehHhhccCCHHHHHHHHHHH
Confidence 47999999999999999887652 224578888888887543 35 899999731 112456788999
Q ss_pred hhcccCCeEEEEe-CCCCCcc-cccccccCchhhhhchHHHHHHHHHHh
Q 044253 87 MTLFKVGGIVIYD-NTLWGGT-VAMAEEQVPEILRSTRQPNWNLDKLFA 133 (139)
Q Consensus 87 ~~lL~~gG~ii~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (139)
...|+|+|+|++. |+.-.+. ...+. . ...||....|.+.++
T Consensus 148 k~~L~~~G~IvvKEN~~~~~~~~~D~~-D-----sSvTRs~~~~~~lF~ 190 (218)
T PF05891_consen 148 KQALKPNGVIVVKENVSSSGFDEFDEE-D-----SSVTRSDEHFRELFK 190 (218)
T ss_dssp HHHEEEEEEEEEEEEEESSSEEEEETT-T-----TEEEEEHHHHHHHHH
T ss_pred HHhCcCCcEEEEEecCCCCCCcccCCc-c-----CeeecCHHHHHHHHH
Confidence 9999999999996 5555564 44433 2 244455555554443
No 186
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.31 E-value=0.00091 Score=49.75 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=50.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~ 85 (139)
+.++++||+|+++++.|++++ .+++++++|+.+. .. +. +||+|++..... .....++.
T Consensus 67 ~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~---~~-----~~---sfD~V~~~~vL~hl~p~~~~~~l~e 129 (204)
T TIGR03587 67 FKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDP---FK-----DN---FFDLVLTKGVLIHINPDNLPTAYRE 129 (204)
T ss_pred CCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCC---CC-----CC---CEEEEEECChhhhCCHHHHHHHHHH
Confidence 568999999999999999864 2467888887762 11 46 899999876321 23445666
Q ss_pred HhhcccCCeEEEEeCCC
Q 044253 86 LMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~ 102 (139)
+.+.+ ++.+++.+..
T Consensus 130 l~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 130 LYRCS--NRYILIAEYY 144 (204)
T ss_pred HHhhc--CcEEEEEEee
Confidence 66665 4566655543
No 187
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00024 Score=53.31 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=58.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcC--------C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVE--------V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY 82 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g--------~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~ 82 (139)
..+++||.-++.++.+++|+.+.- + ..+..++.||.+...+. .. +||.|++.+... +.
T Consensus 109 ~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-------~a---~YDaIhvGAaa~---~~ 175 (237)
T KOG1661|consen 109 GNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-------QA---PYDAIHVGAAAS---EL 175 (237)
T ss_pred ccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc-------cC---CcceEEEccCcc---cc
Confidence 345899999999999999987653 1 24688899999887443 35 899999997543 34
Q ss_pred HHHHhhcccCCeEEEEeCC
Q 044253 83 RETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~ 101 (139)
.+.+++.|++||.+++--.
T Consensus 176 pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 176 PQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred HHHHHHhhccCCeEEEeec
Confidence 5577889999999987433
No 188
>PRK13699 putative methylase; Provisional
Probab=97.28 E-value=0.00049 Score=52.09 Aligned_cols=51 Identities=6% Similarity=0.145 Sum_probs=40.4
Q ss_pred EEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------------hHHHHHHHhhcccCCeEEEE
Q 044253 40 INLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------------YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 40 i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------------~~~~~~~~~~lL~~gG~ii~ 98 (139)
+++++||+.+.++.+. ++ ++|+||.||++.. ...++..+.+.|+|||.+++
T Consensus 2 ~~l~~gD~le~l~~lp-----d~---SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP-----DN---AVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC-----cc---ccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4789999999998875 56 9999999997630 12456677789999999875
No 189
>PRK11524 putative methyltransferase; Provisional
Probab=97.25 E-value=0.00076 Score=52.52 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=41.9
Q ss_pred CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---------------h----HHHHHHHhhcccCCeEEEE
Q 044253 38 LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---------------Y----RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 38 ~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---------------~----~~~~~~~~~lL~~gG~ii~ 98 (139)
...+++++|+.+.+..+. .+ +||+||+||+... | ..++..+.++|++||.+++
T Consensus 7 ~~~~i~~gD~~~~l~~l~-----~~---siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 7 EAKTIIHGDALTELKKIP-----SE---SVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCCEEEeccHHHHHHhcc-----cC---cccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 356899999999987764 46 8999999997421 1 2466778899999999986
Q ss_pred e
Q 044253 99 D 99 (139)
Q Consensus 99 ~ 99 (139)
.
T Consensus 79 ~ 79 (284)
T PRK11524 79 M 79 (284)
T ss_pred E
Confidence 4
No 190
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.24 E-value=0.001 Score=54.50 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=61.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------- 78 (139)
..|++.|.+...+...+.|+.+.|+. +..+...|..++-.... .. +||.|++|++...
T Consensus 267 G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~-----~~---~fDRVLLDAPCSGtgvi~K~~~vkt~ 337 (460)
T KOG1122|consen 267 GVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEF-----PG---SFDRVLLDAPCSGTGVISKDQSVKTN 337 (460)
T ss_pred ceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCccccccccc-----Cc---ccceeeecCCCCCCcccccccccccc
Confidence 35899999999999999999999984 67777888876521110 23 7999999986532
Q ss_pred ------------hHHHHHHHhhcccCCeEEEEeC
Q 044253 79 ------------YRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 79 ------------~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
-.+++.++.+++++||+|++..
T Consensus 338 k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 338 KTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 1346677889999999999743
No 191
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.24 E-value=0.0011 Score=49.49 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=48.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCc-------c----
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKD-------N---- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~-------~---- 78 (139)
.+|++||+++. .+. .+++++++|+.+. ++++..... .. +||+|++|.... +
T Consensus 77 ~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~-~~---~~D~V~S~~~~~~~g~~~~d~~~~ 140 (209)
T PRK11188 77 GRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLERVG-DS---KVQVVMSDMAPNMSGTPAVDIPRA 140 (209)
T ss_pred ceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHHhC-CC---CCCEEecCCCCccCCChHHHHHHH
Confidence 58999999981 123 3589999998764 233221111 35 899999986210 1
Q ss_pred ---hHHHHHHHhhcccCCeEEEEe
Q 044253 79 ---YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ---~~~~~~~~~~lL~~gG~ii~~ 99 (139)
....++.+.++|+|||.+++.
T Consensus 141 ~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 141 MYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEE
Confidence 134667788999999999985
No 192
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.23 E-value=0.0013 Score=47.68 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=51.5
Q ss_pred hhhhhh--hcceeEEeCCccHHHHHHHHHHHcC--CCCcEEEEeCChHHHH-HhhHHhhhcccCCCceeEEEE-cCC--C
Q 044253 5 LESTFF--IYFIVAIDVSRESSETGLPIIKKVE--VDLKINLMESRALPAL-DQLLKDEKIHFFFENFDYAFV-DAH--K 76 (139)
Q Consensus 5 ~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g--~~~~i~~~~~da~~~l-~~~~~~~~~~~~~~~fD~If~-D~~--~ 76 (139)
+..+.. ..+|++.|.++ .+..++.|++.++ ...++.+..-|-.+.. ..... .. +||+|+. |.- .
T Consensus 61 i~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~----~~---~~D~IlasDv~Y~~ 132 (173)
T PF10294_consen 61 IAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLE----PH---SFDVILASDVLYDE 132 (173)
T ss_dssp HHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-----S---SBSEEEEES--S-G
T ss_pred HHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccc----cc---cCCEEEEecccchH
Confidence 334444 67899999999 9999999999987 5567888776643322 12111 24 7999985 553 2
Q ss_pred cchHHHHHHHhhcccCCeEEEEe
Q 044253 77 DNYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 77 ~~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
..+..++..+..+|+++|.+++-
T Consensus 133 ~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 133 ELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp GGHHHHHHHHHHHBTT-TTEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEE
Confidence 45677888888999999986653
No 193
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.22 E-value=0.0012 Score=51.86 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=47.3
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
..+.+|+++|+|+.+++.+++++...+..++++++++|+.+. . .. .||.|+.+.++.
T Consensus 56 ~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~-~--------~~---~~d~VvaNlPY~ 112 (294)
T PTZ00338 56 QLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT-E--------FP---YFDVCVANVPYQ 112 (294)
T ss_pred HhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-c--------cc---ccCEEEecCCcc
Confidence 345689999999999999999998877667899999999875 1 24 799999988653
No 194
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0017 Score=52.40 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=63.1
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV 92 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~ 92 (139)
+|++-|+||++++.+++|++.+... ...++..|+..++.+. .. .||+|=+||- .....+++.+...++.
T Consensus 78 ~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~---~fd~IDiDPF-GSPaPFlDaA~~s~~~ 146 (380)
T COG1867 78 KVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HR---AFDVIDIDPF-GSPAPFLDAALRSVRR 146 (380)
T ss_pred EEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CC---CccEEecCCC-CCCchHHHHHHHHhhc
Confidence 7999999999999999999998443 4566669999998764 46 8999999984 3456789999999999
Q ss_pred CeEEEEe
Q 044253 93 GGIVIYD 99 (139)
Q Consensus 93 gG~ii~~ 99 (139)
||++.+.
T Consensus 147 ~G~l~vT 153 (380)
T COG1867 147 GGLLCVT 153 (380)
T ss_pred CCEEEEE
Confidence 9999874
No 195
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.11 E-value=0.0012 Score=50.77 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=56.6
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCC----------------------------------CCcEEEEe----CChHH
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEV----------------------------------DLKINLME----SRALP 49 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~----------------------------------~~~i~~~~----~da~~ 49 (139)
-+....|.+||||+..++.|+++++...- .+++.+.. .+..+
T Consensus 79 ~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~d 158 (288)
T KOG2899|consen 79 DFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDD 158 (288)
T ss_pred hhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccccCCcchhcccccEEEecch
Confidence 33345699999999999999999764210 01111111 11222
Q ss_pred HHHhhHHhhhcccCCCceeEEEEcCC---------CcchHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253 50 ALDQLLKDEKIHFFFENFDYAFVDAH---------KDNYRNYRETLMTLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 50 ~l~~~~~~~~~~~~~~~fD~If~D~~---------~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~ 105 (139)
+|... .. .||+|++=.- -.....+|..+..+|.|||++|++-=-|..
T Consensus 159 fl~~~------~~---~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks 214 (288)
T KOG2899|consen 159 FLDMI------QP---EFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS 214 (288)
T ss_pred hhhhc------cc---cccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH
Confidence 33211 34 7999997431 123577899999999999999987655543
No 196
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.08 E-value=0.00069 Score=53.37 Aligned_cols=64 Identities=16% Similarity=0.339 Sum_probs=39.9
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHH-HHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALP-ALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~-~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
++.++.+.++.|+|+.+++.|++|++.+ ++.++|+++...-.. .+..+... .+ .||+.+++|+.
T Consensus 122 ~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~---~e---~~dftmCNPPF 187 (299)
T PF05971_consen 122 AKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQP---NE---RFDFTMCNPPF 187 (299)
T ss_dssp HHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S----EEEEEE----
T ss_pred hhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcc---cc---eeeEEecCCcc
Confidence 4556889999999999999999999999 999999998764332 22222111 35 89999999863
No 197
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.99 E-value=0.0018 Score=50.98 Aligned_cols=56 Identities=14% Similarity=0.043 Sum_probs=44.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
..+|+++|+|+++++.|++.+.. .+++++++++..++...+..+ -. ++|.|++|.+
T Consensus 44 ~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~---~~---~vDgIl~DLG 99 (296)
T PRK00050 44 KGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG---LG---KVDGILLDLG 99 (296)
T ss_pred CCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC---CC---ccCEEEECCC
Confidence 36899999999999999998865 468999999999986544210 13 6999999864
No 198
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.98 E-value=0.0039 Score=45.38 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=47.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCC-------cc----
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHK-------DN---- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~-------~~---- 78 (139)
.+|+++|+|+.+ +. .+++++++|+.+. +..+....+ .. +||+|++|+.. ..
T Consensus 58 ~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~-~~---~~D~V~~~~~~~~~g~~~~~~~~~ 121 (188)
T TIGR00438 58 GRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVG-DD---KVDVVMSDAAPNISGYWDIDHLRS 121 (188)
T ss_pred ceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhC-CC---CccEEEcCCCCCCCCCccccHHHH
Confidence 469999999965 22 3578888887542 111111001 34 79999998521 01
Q ss_pred ---hHHHHHHHhhcccCCeEEEEe
Q 044253 79 ---YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ---~~~~~~~~~~lL~~gG~ii~~ 99 (139)
....+..+.+.|+|||.+++.
T Consensus 122 ~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 122 IDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHHHHHHHHHHHHccCCCEEEEE
Confidence 145677888999999999985
No 199
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.97 E-value=0.00077 Score=53.85 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=60.4
Q ss_pred hhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC--CCcchHHHH
Q 044253 7 STFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA--HKDNYRNYR 83 (139)
Q Consensus 7 ~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~--~~~~~~~~~ 83 (139)
+|..| .+|++||-|.-+ +.|++.+..+++.+.+++++|.+.+. .++ .+ +.|+|+..= ....+...+
T Consensus 78 ~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~e---KVDiIvSEWMGy~Ll~EsMl 146 (346)
T KOG1499|consen 78 AAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VE---KVDIIVSEWMGYFLLYESML 146 (346)
T ss_pred HHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ecC-----cc---ceeEEeehhhhHHHHHhhhh
Confidence 34443 479999998777 99999999999999999999999886 332 25 899999863 112233344
Q ss_pred HHHh----hcccCCeEEEEe
Q 044253 84 ETLM----TLFKVGGIVIYD 99 (139)
Q Consensus 84 ~~~~----~lL~~gG~ii~~ 99 (139)
+.++ +.|++||.+.-+
T Consensus 147 dsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 147 DSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred hhhhhhhhhccCCCceEccc
Confidence 4433 699999998643
No 200
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.0026 Score=47.90 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=64.6
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCc-eeEEEEcCCCcchHHHHHHH
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFEN-FDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~-fD~If~D~~~~~~~~~~~~~ 86 (139)
.....+||.+|.....+...++-.+..|+ ++++++++.+.++-. +. + ||+|.+-+-. ....+.+.+
T Consensus 88 ~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~--------~~---~~~D~vtsRAva-~L~~l~e~~ 154 (215)
T COG0357 88 AFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQ--------EK---KQYDVVTSRAVA-SLNVLLELC 154 (215)
T ss_pred hccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhccc--------cc---ccCcEEEeehcc-chHHHHHHH
Confidence 34567799999999999999999999999 479999999988732 23 4 9999998753 466788899
Q ss_pred hhcccCCeEEEE
Q 044253 87 MTLFKVGGIVIY 98 (139)
Q Consensus 87 ~~lL~~gG~ii~ 98 (139)
.+++++||.+++
T Consensus 155 ~pllk~~g~~~~ 166 (215)
T COG0357 155 LPLLKVGGGFLA 166 (215)
T ss_pred HHhcccCCcchh
Confidence 999999998763
No 201
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=96.93 E-value=0.0022 Score=44.28 Aligned_cols=51 Identities=27% Similarity=0.300 Sum_probs=38.3
Q ss_pred cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC--CCcc----hHHHHHHHhhcccCCeEEEE
Q 044253 39 KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA--HKDN----YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 39 ~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~--~~~~----~~~~~~~~~~lL~~gG~ii~ 98 (139)
.+++..||+.+.++++ .. .||+||.|+ +..+ -.+++..+.+++++||++..
T Consensus 32 ~L~L~~gDa~~~l~~l------~~---~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL------DA---RFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-------T----EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhC------cc---cCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 4677899999999887 45 899999997 2222 26789999999999999975
No 202
>PRK05785 hypothetical protein; Provisional
Probab=96.92 E-value=0.0021 Score=48.45 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=48.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
+.+|+++|+|++|++.|++. ...+++|+... + +. ++ +||+|++... ..+....+.++.
T Consensus 74 ~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p-~~-----d~---sfD~v~~~~~l~~~~d~~~~l~e~~ 134 (226)
T PRK05785 74 KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P-FR-----DK---SFDVVMSSFALHASDNIEKVIAEFT 134 (226)
T ss_pred CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-C-CC-----CC---CEEEEEecChhhccCCHHHHHHHHH
Confidence 46899999999999999863 13467888764 3 22 46 8999998653 235567888899
Q ss_pred hcccCCe
Q 044253 88 TLFKVGG 94 (139)
Q Consensus 88 ~lL~~gG 94 (139)
+.|+|.+
T Consensus 135 RvLkp~~ 141 (226)
T PRK05785 135 RVSRKQV 141 (226)
T ss_pred HHhcCce
Confidence 9999953
No 203
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.82 E-value=0.0071 Score=50.93 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=62.9
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc---CC-Cc------
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD---AH-KD------ 77 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D---~~-~~------ 77 (139)
......+++||++...+..|.+.....++ .++.++++|+......+. .. ++|.|++. |. +.
T Consensus 368 ~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~-----~~---sv~~i~i~FPDPWpKkrh~krR 438 (506)
T PRK01544 368 MNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLP-----NN---SLDGIYILFPDPWIKNKQKKKR 438 (506)
T ss_pred hCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcC-----cc---cccEEEEECCCCCCCCCCcccc
Confidence 33456799999999999999888888888 479999999876554443 35 79999885 42 11
Q ss_pred -chHHHHHHHhhcccCCeEEEE
Q 044253 78 -NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 78 -~~~~~~~~~~~lL~~gG~ii~ 98 (139)
....+++.+.+.|++||.+.+
T Consensus 439 l~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 439 IFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred ccCHHHHHHHHHhcCCCCEEEE
Confidence 135688889999999999865
No 204
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0012 Score=47.05 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=45.3
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
..|.++|+++++++++++|.+...++ +.++++|..+.... .+ .||.++++++.
T Consensus 72 e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-------~g---~fDtaviNppF 124 (185)
T KOG3420|consen 72 ESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-------GG---IFDTAVINPPF 124 (185)
T ss_pred ceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-------CC---eEeeEEecCCC
Confidence 46999999999999999999999884 79999999886433 35 89999999863
No 205
>PRK06202 hypothetical protein; Provisional
Probab=96.71 E-value=0.0039 Score=46.82 Aligned_cols=77 Identities=9% Similarity=0.035 Sum_probs=50.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRETL 86 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~~ 86 (139)
.+|+++|+|+++++.|+++....+ +++.++++... +. . .+ +||+|++.....+ ....+..+
T Consensus 89 ~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l-~~-~-----~~---~fD~V~~~~~lhh~~d~~~~~~l~~~ 154 (232)
T PRK06202 89 LEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDEL-VA-E-----GE---RFDVVTSNHFLHHLDDAEVVRLLADS 154 (232)
T ss_pred cEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccc-cc-c-----CC---CccEEEECCeeecCChHHHHHHHHHH
Confidence 489999999999999998765433 45555544332 21 1 46 8999999753221 23567777
Q ss_pred hhcccCCeEEEEeCCCCC
Q 044253 87 MTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 87 ~~lL~~gG~ii~~~~~~~ 104 (139)
.+.++ |.+++.+...+
T Consensus 155 ~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 155 AALAR--RLVLHNDLIRS 170 (232)
T ss_pred HHhcC--eeEEEeccccC
Confidence 77776 56666665544
No 206
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0027 Score=52.76 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=68.1
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch--------
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-------- 79 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-------- 79 (139)
.+...++++||++|++++.|++++....- +|.+++-.|+..++.++.+....+. .||++++|.+..+.
T Consensus 316 ~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~---~~dvl~~dvds~d~~g~~~pp~ 391 (482)
T KOG2352|consen 316 SLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDI---CPDVLMVDVDSKDSHGMQCPPP 391 (482)
T ss_pred ecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhcccccc---CCcEEEEECCCCCcccCcCCch
Confidence 34457899999999999999999876554 4788888999999887654211135 79999998643221
Q ss_pred ----HHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253 80 ----RNYRETLMTLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 80 ----~~~~~~~~~lL~~gG~ii~~~~~~~~ 105 (139)
..++..+...|.|.|.++++-+..+.
T Consensus 392 ~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 392 AFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred HHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 22344455799999999887665543
No 207
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0037 Score=48.72 Aligned_cols=74 Identities=9% Similarity=0.075 Sum_probs=54.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..++++.|......+.|++-++..|+.+++++.+.|+...--..+ +. .+|.||+|-+. ++..+.-+.+.|
T Consensus 130 tGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k-----s~---~aDaVFLDlPa--Pw~AiPha~~~l 199 (314)
T KOG2915|consen 130 TGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK-----SL---KADAVFLDLPA--PWEAIPHAAKIL 199 (314)
T ss_pred CcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc-----cc---ccceEEEcCCC--hhhhhhhhHHHh
Confidence 368999999999999999999999999999999998875411111 24 89999999754 233344444555
Q ss_pred cCCe
Q 044253 91 KVGG 94 (139)
Q Consensus 91 ~~gG 94 (139)
+.+|
T Consensus 200 k~~g 203 (314)
T KOG2915|consen 200 KDEG 203 (314)
T ss_pred hhcC
Confidence 5555
No 208
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.69 E-value=0.0016 Score=53.55 Aligned_cols=51 Identities=27% Similarity=0.165 Sum_probs=48.1
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCc-EEEEeCChHHHHH
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLK-INLMESRALPALD 52 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~-i~~~~~da~~~l~ 52 (139)
||+++++..+.+|++-|.+++++++.+.|+..+.+.+. ++++..|+..+++
T Consensus 262 Pfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 262 PFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred ccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 99999999999999999999999999999999999655 9999999999984
No 209
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.62 E-value=0.0087 Score=47.35 Aligned_cols=83 Identities=18% Similarity=0.157 Sum_probs=56.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~~~~~~~~~ 88 (139)
..|+++|.+.......+---+..|...++.++ ....+.++.. + .||.||+-+ ...++...+.++..
T Consensus 139 ~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~~-------~---~FDtVF~MGVLYHrr~Pl~~L~~Lk~ 207 (315)
T PF08003_consen 139 KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPNL-------G---AFDTVFSMGVLYHRRSPLDHLKQLKD 207 (315)
T ss_pred CEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhcccc-------C---CcCEEEEeeehhccCCHHHHHHHHHH
Confidence 36999999998877755444445543333333 2233333332 5 899999987 34456778899999
Q ss_pred cccCCeEEEEeCCCCCc
Q 044253 89 LFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 89 lL~~gG~ii~~~~~~~~ 105 (139)
.|++||.++++.....|
T Consensus 208 ~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 208 SLRPGGELVLETLVIDG 224 (315)
T ss_pred hhCCCCEEEEEEeeecC
Confidence 99999999988776654
No 210
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.54 E-value=0.0019 Score=49.20 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=36.4
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHc---CCC-----CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKV---EVD-----LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~---g~~-----~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
..+.+|+++|.||-.....+.-++.. ... .|++++++|+.++|. .. .. +||+|++||
T Consensus 95 ~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~-----~~---s~DVVY~DP 159 (234)
T PF04445_consen 95 SLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QP-----DN---SFDVVYFDP 159 (234)
T ss_dssp HHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CH-----SS-----SEEEE--
T ss_pred ccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hc-----CC---CCCEEEECC
Confidence 35889999999999998888655432 211 489999999999987 22 46 899999998
No 211
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.53 E-value=0.0045 Score=48.39 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=53.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch----------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY---------- 79 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~---------- 79 (139)
..+++++|+++.++..|+-|+...|.. ....+.++|.+..-.... .. +||+|+++|+....
T Consensus 77 ~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~-----~~---~~D~ii~NPPf~~~~~~~~~~~~~ 148 (311)
T PF02384_consen 77 EINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK-----NQ---KFDVIIGNPPFGSKEWKDEELEKD 148 (311)
T ss_dssp CEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS-----T-----EEEEEEE--CTCES-STGGGCTT
T ss_pred cceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc-----cc---ccccccCCCCcccccccccccccc
Confidence 467999999999999999998877763 335799999875421110 14 79999999853211
Q ss_pred --------------HHHHHHHhhcccCCeEEE
Q 044253 80 --------------RNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 80 --------------~~~~~~~~~lL~~gG~ii 97 (139)
..++..++..|++||.++
T Consensus 149 ~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 149 ERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp CCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccccCCCccchhhhhHHHHHhhccccccee
Confidence 136677889999999854
No 212
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.51 E-value=0.002 Score=47.80 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=49.5
Q ss_pred hcceeEEeCCccHHHHHHHH--------------HHH-----cC--------CCCcEEEEeCChHHHHHhhHHhhhcccC
Q 044253 11 IYFIVAIDVSRESSETGLPI--------------IKK-----VE--------VDLKINLMESRALPALDQLLKDEKIHFF 63 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n--------------~~~-----~g--------~~~~i~~~~~da~~~l~~~~~~~~~~~~ 63 (139)
..+|++.|+|+.+++.|++- .++ .| +.++|+|...|..+. ... ..
T Consensus 64 ~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~-~~~------~~- 135 (196)
T PF01739_consen 64 DFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP-DPP------FG- 135 (196)
T ss_dssp SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S-------------
T ss_pred ceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC-Ccc------cC-
Confidence 46899999999999999861 111 11 124688888888771 111 35
Q ss_pred CCceeEEEEcCC-----CcchHHHHHHHhhcccCCeEEEEeCC
Q 044253 64 FENFDYAFVDAH-----KDNYRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 64 ~~~fD~If~D~~-----~~~~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.||+||+--. ...-...++.+...|+|||++++...
T Consensus 136 --~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 136 --RFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp ---EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred --CccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 8999998532 12235678888899999999998543
No 213
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.39 E-value=0.01 Score=45.59 Aligned_cols=56 Identities=16% Similarity=0.054 Sum_probs=44.0
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
.+....+|+++|+|+.+++.+++++.. .++++++++|+.+. + + . .||.|+.+.++.
T Consensus 47 L~~~~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~-~-~-------~---~~d~Vv~NlPy~ 102 (258)
T PRK14896 47 LAKRAKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKV-D-L-------P---EFNKVVSNLPYQ 102 (258)
T ss_pred HHHhCCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccC-C-c-------h---hceEEEEcCCcc
Confidence 344456899999999999999998854 35799999999764 1 1 3 689999987653
No 214
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.37 E-value=0.0015 Score=51.31 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=54.2
Q ss_pred hcceeEEeCCccHHHHHHHHH------------------HHc------------CCCCcEEEEeCChHHHHHhhHHhhhc
Q 044253 11 IYFIVAIDVSRESSETGLPII------------------KKV------------EVDLKINLMESRALPALDQLLKDEKI 60 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~------------------~~~------------g~~~~i~~~~~da~~~l~~~~~~~~~ 60 (139)
..+|+++|+|+.+++.|++-. ... ++..+|+|...|..+. ....
T Consensus 147 ~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~--~~~~---- 220 (287)
T PRK10611 147 RWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAK--QWAV---- 220 (287)
T ss_pred CcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCC--CCcc----
Confidence 457999999999999999741 110 0224566666666542 1100
Q ss_pred ccCCCceeEEEEcC-----CCcchHHHHHHHhhcccCCeEEEEeC
Q 044253 61 HFFFENFDYAFVDA-----HKDNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 61 ~~~~~~fD~If~D~-----~~~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
.. +||+||+-- +...-..+++.+...|+|||++++..
T Consensus 221 ~~---~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 221 PG---PFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CC---CcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 24 899999832 22234567888999999999998854
No 215
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.30 E-value=0.015 Score=46.04 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=45.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
.+|+++|.|+++++.|++.+... .+++++++++..++...+.. .+ .. ++|.|++|-+
T Consensus 45 g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~-~~-~~---~vDgIl~DLG 101 (305)
T TIGR00006 45 GRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDE-LL-VT---KIDGILVDLG 101 (305)
T ss_pred CEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHh-cC-CC---cccEEEEecc
Confidence 78999999999999999998754 46899999999987554421 11 24 7999999853
No 216
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.29 E-value=0.015 Score=43.93 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=47.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
...+++.|+++..++.|.+|+.++++.+++++.++|.+..+.. ++ .+|.|.+-+
T Consensus 40 ~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-------~d---~~d~ivIAG 93 (226)
T COG2384 40 ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-------ED---EIDVIVIAG 93 (226)
T ss_pred cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-------cC---CcCEEEEeC
Confidence 3579999999999999999999999999999999999877643 45 799998865
No 217
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.28 E-value=0.0093 Score=48.05 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=57.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHH---
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRET--- 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~--- 85 (139)
..+|++||-| +|.++|++.++.+.+.+||+++.|-+.+. ++ .+ +.|+|+..|-. -..++.++.
T Consensus 200 A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PE---k~DviISEPMG~mL~NERMLEsYl~ 267 (517)
T KOG1500|consen 200 AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL------PE---KVDVIISEPMGYMLVNERMLESYLH 267 (517)
T ss_pred cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC------ch---hccEEEeccchhhhhhHHHHHHHHH
Confidence 4589999986 68999999999999999999999988775 23 25 89999998731 112334443
Q ss_pred HhhcccCCeEEE
Q 044253 86 LMTLFKVGGIVI 97 (139)
Q Consensus 86 ~~~lL~~gG~ii 97 (139)
+.+.|+|.|.+.
T Consensus 268 Ark~l~P~GkMf 279 (517)
T KOG1500|consen 268 ARKWLKPNGKMF 279 (517)
T ss_pred HHhhcCCCCccc
Confidence 237999999875
No 218
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.23 E-value=0.0096 Score=44.11 Aligned_cols=75 Identities=11% Similarity=0.152 Sum_probs=50.6
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETL 86 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~ 86 (139)
+..++++||+|++.+..+.++ | +.++++|+.+.|..+. ++ +||.|++.-.. ..+...++++
T Consensus 35 k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~-----d~---sFD~VIlsqtLQ~~~~P~~vL~Em 98 (193)
T PF07021_consen 35 KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFP-----DQ---SFDYVILSQTLQAVRRPDEVLEEM 98 (193)
T ss_pred cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCC-----CC---CccEEehHhHHHhHhHHHHHHHHH
Confidence 456799999999998877642 4 5799999999988764 46 99999997532 2334445544
Q ss_pred hhcccCCeEEEEeCC
Q 044253 87 MTLFKVGGIVIYDNT 101 (139)
Q Consensus 87 ~~lL~~gG~ii~~~~ 101 (139)
++. ...+++.+.|.
T Consensus 99 lRV-gr~~IVsFPNF 112 (193)
T PF07021_consen 99 LRV-GRRAIVSFPNF 112 (193)
T ss_pred HHh-cCeEEEEecCh
Confidence 432 33444444443
No 219
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.22 E-value=0.019 Score=43.60 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=63.4
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch---HHHHHHHhhc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY---RNYRETLMTL 89 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~---~~~~~~~~~l 89 (139)
+=+.||-+|+.++..|.+- ..-.+++.++.|--++.+..+. +. .||-|+-|.-...| ..+.+.+.++
T Consensus 126 ~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~-----d~---~FDGI~yDTy~e~yEdl~~~hqh~~rL 195 (271)
T KOG1709|consen 126 EHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP-----DK---HFDGIYYDTYSELYEDLRHFHQHVVRL 195 (271)
T ss_pred ceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc-----cc---CcceeEeechhhHHHHHHHHHHHHhhh
Confidence 3477899999988887652 2335789999999999988875 45 79999999854444 4456678899
Q ss_pred ccCCeEEEEeCCCCCc
Q 044253 90 FKVGGIVIYDNTLWGG 105 (139)
Q Consensus 90 L~~gG~ii~~~~~~~~ 105 (139)
|||+|++-+-|.+..+
T Consensus 196 LkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 196 LKPEGVFSYFNGLGAD 211 (271)
T ss_pred cCCCceEEEecCcccc
Confidence 9999999876665544
No 220
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.18 E-value=0.0056 Score=49.23 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=47.9
Q ss_pred hhhhhhhcceeEEeCCccHHH-------HHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 5 LESTFFIYFIVAIDVSRESSE-------TGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~-------~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
++.|.+|+.|++.|||-.++. -.+.|+++.|..+ -+.++.+|.....-.- .. .||.|++||++
T Consensus 224 vsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs------n~---~fDaIvcDPPY 294 (421)
T KOG2671|consen 224 VSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS------NL---KFDAIVCDPPY 294 (421)
T ss_pred eehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh------cc---eeeEEEeCCCc
Confidence 577888999999999998887 4578999998644 3777888876542111 35 89999999853
No 221
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.01 Score=49.60 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=66.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|++-|.++.++...++|++.++..+.++..++|+...--.. ......||+|=+||- .....+++.+.+-++
T Consensus 135 ~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~------~~~~~~FDvIDLDPy-Gs~s~FLDsAvqav~ 207 (525)
T KOG1253|consen 135 RQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH------PMVAKFFDVIDLDPY-GSPSPFLDSAVQAVR 207 (525)
T ss_pred hhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc------cccccccceEecCCC-CCccHHHHHHHHHhh
Confidence 3689999999999999999999999999999999998764322 111128999999984 345678999999999
Q ss_pred CCeEEEEe
Q 044253 92 VGGIVIYD 99 (139)
Q Consensus 92 ~gG~ii~~ 99 (139)
.||++.+.
T Consensus 208 ~gGLL~vT 215 (525)
T KOG1253|consen 208 DGGLLCVT 215 (525)
T ss_pred cCCEEEEE
Confidence 99999874
No 222
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.08 E-value=0.0023 Score=48.88 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=62.8
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc-C--CCcchHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD-A--HKDNYRNY 82 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D-~--~~~~~~~~ 82 (139)
+..-+..++++||+|..|++.|.+. |+ .=++.++++..+++... .+ +||+|..- . -......+
T Consensus 142 ~lR~~a~~ltGvDiS~nMl~kA~eK----g~--YD~L~~Aea~~Fl~~~~-----~e---r~DLi~AaDVl~YlG~Le~~ 207 (287)
T COG4976 142 ALRDMADRLTGVDISENMLAKAHEK----GL--YDTLYVAEAVLFLEDLT-----QE---RFDLIVAADVLPYLGALEGL 207 (287)
T ss_pred hHHHHHhhccCCchhHHHHHHHHhc----cc--hHHHHHHHHHHHhhhcc-----CC---cccchhhhhHHHhhcchhhH
Confidence 3344467899999999999999753 32 12566778877775432 45 89999753 2 11234556
Q ss_pred HHHHhhcccCCeEEEEeCC---CCCccccccccc
Q 044253 83 RETLMTLFKVGGIVIYDNT---LWGGTVAMAEEQ 113 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~---~~~~~~~~~~~~ 113 (139)
+-.+..+|++||.+.++-- -+.+++..|+.+
T Consensus 208 ~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~R 241 (287)
T COG4976 208 FAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQR 241 (287)
T ss_pred HHHHHHhcCCCceEEEEecccCCCCCeecchhhh
Confidence 6777789999999988521 234566666654
No 223
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.08 E-value=0.0062 Score=44.49 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=43.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
...++++|+++++++.+++. +++++++|+.+.+.... +. +||+|++.... .+....++.+.
T Consensus 36 ~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~-----~~---sfD~Vi~~~~l~~~~d~~~~l~e~~ 99 (194)
T TIGR02081 36 QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFP-----DK---SFDYVILSQTLQATRNPEEILDEML 99 (194)
T ss_pred CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccC-----CC---CcCEEEEhhHhHcCcCHHHHHHHHH
Confidence 45689999999999988641 36788888876433221 35 89999997532 23445566665
Q ss_pred hccc
Q 044253 88 TLFK 91 (139)
Q Consensus 88 ~lL~ 91 (139)
+.++
T Consensus 100 r~~~ 103 (194)
T TIGR02081 100 RVGR 103 (194)
T ss_pred HhCC
Confidence 5544
No 224
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.053 Score=40.13 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=58.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------------- 77 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------------- 77 (139)
+...+.|+++++++..++-++.++. ++..++.|....+.. + +.|+++.++++.
T Consensus 69 ~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~--------~---~VDvLvfNPPYVpt~~~~i~~~~i~~ 135 (209)
T KOG3191|consen 69 ALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRN--------E---SVDVLVFNPPYVPTSDEEIGDEGIAS 135 (209)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhcc--------C---CccEEEECCCcCcCCcccchhHHHHH
Confidence 3467899999999999999998886 489999999988753 5 899999987431
Q ss_pred ------c----hHHHHHHHhhcccCCeEEEEeCC
Q 044253 78 ------N----YRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 78 ------~----~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
+ ...++.++-.+|+|.|++..-..
T Consensus 136 a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 136 AWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred HHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 0 12345556679999999876433
No 225
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.94 E-value=0.01 Score=44.74 Aligned_cols=78 Identities=12% Similarity=0.088 Sum_probs=56.9
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----h
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----Y 79 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~ 79 (139)
+..+....+++.+|. |+.++.+++ .+|++++.||.++ .+ . .+|++++---..+ -
T Consensus 118 l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~---~~-------P---~~D~~~l~~vLh~~~d~~~ 176 (241)
T PF00891_consen 118 LARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFD---PL-------P---VADVYLLRHVLHDWSDEDC 176 (241)
T ss_dssp HHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTT---CC-------S---SESEEEEESSGGGS-HHHH
T ss_pred HHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHh---hh-------c---cccceeeehhhhhcchHHH
Confidence 334455678999999 889999888 5799999999983 22 3 5999998543222 3
Q ss_pred HHHHHHHhhcccCC--eEEEEeCCCC
Q 044253 80 RNYRETLMTLFKVG--GIVIYDNTLW 103 (139)
Q Consensus 80 ~~~~~~~~~lL~~g--G~ii~~~~~~ 103 (139)
..+++.+.+.|+|| |.|++.+...
T Consensus 177 ~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 177 VKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp HHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 45788888999998 9998866655
No 226
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.94 E-value=0.01 Score=45.55 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=56.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEc-----CCCcchHHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVD-----AHKDNYRNYRET 85 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D-----~~~~~~~~~~~~ 85 (139)
.+|+++|-|+.+++..+++..-.. .++.-...|...- +.... +.+ ++|+|.+- .+.......++.
T Consensus 98 l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~----~~~---svD~it~IFvLSAi~pek~~~a~~n 168 (264)
T KOG2361|consen 98 LKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPP----EEG---SVDIITLIFVLSAIHPEKMQSVIKN 168 (264)
T ss_pred eEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCC----CcC---ccceEEEEEEEeccChHHHHHHHHH
Confidence 579999999999999999876544 3555555454322 11100 024 89977542 123345677889
Q ss_pred HhhcccCCeEEEEeCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~ 103 (139)
+.++|+|||.+++.|.-.
T Consensus 169 l~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 169 LRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred HHHHhCCCcEEEEeeccc
Confidence 999999999999976544
No 227
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.83 E-value=0.033 Score=43.06 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=46.8
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.+..+.+|+++|+|+++++.+++++.. ++++++++|+.+. + +. +. .+|.|+.++++.-...++..+
T Consensus 60 L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~-~-~~-----~~---~~~~vv~NlPY~iss~ii~~~ 125 (272)
T PRK00274 60 LLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV-D-LS-----EL---QPLKVVANLPYNITTPLLFHL 125 (272)
T ss_pred HHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC-C-HH-----Hc---CcceEEEeCCccchHHHHHHH
Confidence 344456899999999999999988742 5799999999875 2 21 11 258999988764434444443
Q ss_pred h
Q 044253 87 M 87 (139)
Q Consensus 87 ~ 87 (139)
+
T Consensus 126 l 126 (272)
T PRK00274 126 L 126 (272)
T ss_pred H
Confidence 3
No 228
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.83 E-value=0.018 Score=48.43 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=40.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
..++++|+|+.++..++.++...+. ..+.+.++|........... ..+ .||+|+.+|+.
T Consensus 64 ~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~--~~~---~fD~IIgNPPy 122 (524)
T TIGR02987 64 LNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIES--YLD---LFDIVITNPPY 122 (524)
T ss_pred eeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccc--ccC---cccEEEeCCCc
Confidence 5689999999999999999988762 23667777755431111000 024 79999999864
No 229
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.78 E-value=0.04 Score=43.57 Aligned_cols=58 Identities=12% Similarity=0.093 Sum_probs=45.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
..+++++|.|+++++.|++.+...+ +|+++++++.......+... + .. ++|-|++|-+
T Consensus 48 ~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~-~-i~---~vDGiL~DLG 105 (314)
T COG0275 48 LGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL-G-IG---KVDGILLDLG 105 (314)
T ss_pred CCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc-C-CC---ceeEEEEecc
Confidence 3579999999999999999998766 79999999987765443211 1 24 8999999854
No 230
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.76 E-value=0.0044 Score=47.49 Aligned_cols=77 Identities=9% Similarity=0.053 Sum_probs=48.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~~~~~~~~l 89 (139)
.+|+++|+|++|++.|++.....-..-..++...+..+++.. ++ +.|+|.+--. .-+..+++..+.+.
T Consensus 56 k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~-------e~---SVDlI~~Aqa~HWFdle~fy~~~~rv 125 (261)
T KOG3010|consen 56 KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG-------EE---SVDLITAAQAVHWFDLERFYKEAYRV 125 (261)
T ss_pred hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC-------Cc---ceeeehhhhhHHhhchHHHHHHHHHH
Confidence 479999999999999987432111111122333333333211 46 8999987542 22457788889999
Q ss_pred ccCCe-EEEE
Q 044253 90 FKVGG-IVIY 98 (139)
Q Consensus 90 L~~gG-~ii~ 98 (139)
|+++| ++.+
T Consensus 126 LRk~Gg~iav 135 (261)
T KOG3010|consen 126 LRKDGGLIAV 135 (261)
T ss_pred cCCCCCEEEE
Confidence 98888 6654
No 231
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.52 E-value=0.09 Score=45.50 Aligned_cols=51 Identities=25% Similarity=0.227 Sum_probs=40.6
Q ss_pred cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC--CCcc----hHHHHHHHhhcccCCeEEEE
Q 044253 39 KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA--HKDN----YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 39 ~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~--~~~~----~~~~~~~~~~lL~~gG~ii~ 98 (139)
+++++.||+.+.++++ .. .+|++|+|+ +..+ -.++|..+.+++++||+++-
T Consensus 148 ~l~l~~gd~~~~~~~~------~~---~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 148 TLDLWFGDANELLPQL------DA---RADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEEEecCHHHHHHhc------cc---cccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 4667889999998876 34 799999997 3222 25688999999999999974
No 232
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.38 E-value=0.057 Score=41.20 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=45.6
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCcee---EEEEcCCCcchHHHHH
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFD---YAFVDAHKDNYRNYRE 84 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD---~If~D~~~~~~~~~~~ 84 (139)
+....+|+++|+|+.+++.+++++.. .++++++++|+.+.- . . .|| +|+.+.+......++.
T Consensus 48 ~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~--~-------~---~~d~~~~vvsNlPy~i~~~il~ 112 (253)
T TIGR00755 48 LKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVD--L-------P---DFPKQLKVVSNLPYNISSPLIF 112 (253)
T ss_pred HHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCC--h-------h---HcCCcceEEEcCChhhHHHHHH
Confidence 33446799999999999999988743 357999999997642 1 2 355 8888876543344444
Q ss_pred HHh
Q 044253 85 TLM 87 (139)
Q Consensus 85 ~~~ 87 (139)
.+.
T Consensus 113 ~ll 115 (253)
T TIGR00755 113 KLL 115 (253)
T ss_pred HHh
Confidence 444
No 233
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.34 E-value=0.073 Score=38.91 Aligned_cols=76 Identities=18% Similarity=0.113 Sum_probs=55.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRETL 86 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~~ 86 (139)
..++++|.|++......+.. +.++++.||+.+.-..+... + .. .||.|++..+... -..+++.+
T Consensus 74 ~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e~-~-gq---~~D~viS~lPll~~P~~~~iaile~~ 142 (194)
T COG3963 74 ESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGEH-K-GQ---FFDSVISGLPLLNFPMHRRIAILESL 142 (194)
T ss_pred cceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhhc-C-CC---eeeeEEeccccccCcHHHHHHHHHHH
Confidence 46899999999998887654 34679999998763223211 1 35 6999999865433 34678999
Q ss_pred hhcccCCeEEEE
Q 044253 87 MTLFKVGGIVIY 98 (139)
Q Consensus 87 ~~lL~~gG~ii~ 98 (139)
...|..||.++-
T Consensus 143 ~~rl~~gg~lvq 154 (194)
T COG3963 143 LYRLPAGGPLVQ 154 (194)
T ss_pred HHhcCCCCeEEE
Confidence 999999999874
No 234
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=95.22 E-value=0.02 Score=43.63 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=52.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC--------C------C
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA--------H------K 76 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~--------~------~ 76 (139)
+...+++|+|+.|+++|.+ +... -.++.+|.-+.++.- .+ +||-+++=. + +
T Consensus 72 Gh~wiGvDiSpsML~~a~~--~e~e----gdlil~DMG~Glpfr------pG---tFDg~ISISAvQWLcnA~~s~~~P~ 136 (270)
T KOG1541|consen 72 GHQWIGVDISPSMLEQAVE--RELE----GDLILCDMGEGLPFR------PG---TFDGVISISAVQWLCNADKSLHVPK 136 (270)
T ss_pred CceEEeecCCHHHHHHHHH--hhhh----cCeeeeecCCCCCCC------CC---ccceEEEeeeeeeecccCccccChH
Confidence 4568999999999999987 2221 367788887776532 35 899988532 1 1
Q ss_pred cchHHHHHHHhhcccCCeEEEE
Q 044253 77 DNYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 77 ~~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.....+|..+...|++|+..++
T Consensus 137 ~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 137 KRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred HHHHHHhhhhhhhhccCceeEE
Confidence 1234578888899999998876
No 235
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.01 E-value=0.068 Score=42.79 Aligned_cols=83 Identities=24% Similarity=0.323 Sum_probs=52.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcC---------CCCcEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVE---------VDLKINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVDAHK---- 76 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g---------~~~~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D~~~---- 76 (139)
..+++++|++.+.++.|++..+... ..-...++.+|.... +...... ... +||+|=+=...
T Consensus 85 i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~--~~~---~FDvVScQFalHY~F 159 (331)
T PF03291_consen 85 IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP--RSR---KFDVVSCQFALHYAF 159 (331)
T ss_dssp -SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS--TTS----EEEEEEES-GGGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc--cCC---CcceeehHHHHHHhc
Confidence 3579999999999999999883211 112467888888742 2221100 014 89999764422
Q ss_pred ---cchHHHHHHHhhcccCCeEEEE
Q 044253 77 ---DNYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 77 ---~~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.....+++.+...|+|||++|.
T Consensus 160 ese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 160 ESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1234578888899999999985
No 236
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.74 E-value=0.12 Score=34.67 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=54.3
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|+++|.+++..+.+++ .|...-+.....|..+.+..+.. +. .+|+||--.+. ...++....+
T Consensus 13 ~G~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~~----~~---~~d~vid~~g~---~~~~~~~~~~ 78 (130)
T PF00107_consen 13 MGAKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELTG----GR---GVDVVIDCVGS---GDTLQEAIKL 78 (130)
T ss_dssp TTSEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHTT----TS---SEEEEEESSSS---HHHHHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHh----hcccccccccccccccccccccc----cc---cceEEEEecCc---HHHHHHHHHH
Confidence 35899999999999888875 45432222223345555554421 24 69999876652 4577888999
Q ss_pred ccCCeEEEEeCCCC
Q 044253 90 FKVGGIVIYDNTLW 103 (139)
Q Consensus 90 L~~gG~ii~~~~~~ 103 (139)
|+++|.+++-...-
T Consensus 79 l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 79 LRPGGRIVVVGVYG 92 (130)
T ss_dssp EEEEEEEEEESSTS
T ss_pred hccCCEEEEEEccC
Confidence 99999999765544
No 237
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=94.74 E-value=0.16 Score=39.33 Aligned_cols=60 Identities=10% Similarity=-0.077 Sum_probs=44.9
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
+.+..+.+|++||+|+.++...++.+. ..++++++++|+.+.- +.. -. .++.|+.+.++.
T Consensus 47 ~Ll~~~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d--~~~----l~---~~~~vVaNlPY~ 106 (259)
T COG0030 47 PLLERAARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFD--FPS----LA---QPYKVVANLPYN 106 (259)
T ss_pred HHHhhcCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCc--chh----hc---CCCEEEEcCCCc
Confidence 345567789999999999999998875 3468999999999861 110 11 478899887653
No 238
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.56 E-value=0.042 Score=43.62 Aligned_cols=61 Identities=16% Similarity=0.026 Sum_probs=41.4
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
...+++++|.|+++++.|++++... .+++.+++++..++...+....+ .. ++|.|++|.+.
T Consensus 43 ~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~-~~---~~dgiL~DLGv 103 (310)
T PF01795_consen 43 PNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNG-IN---KVDGILFDLGV 103 (310)
T ss_dssp TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTT-TS----EEEEEEE-S-
T ss_pred CCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccC-CC---ccCEEEEcccc
Confidence 3478999999999999999987644 57999999998876443322101 24 89999999653
No 239
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.52 E-value=0.053 Score=42.19 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=49.9
Q ss_pred hhcceeEEeCCccHHHHHHHH------H-HHc--------------C-------CCCcEEEEeCChHHHHHhhHHhhhcc
Q 044253 10 FIYFIVAIDVSRESSETGLPI------I-KKV--------------E-------VDLKINLMESRALPALDQLLKDEKIH 61 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n------~-~~~--------------g-------~~~~i~~~~~da~~~l~~~~~~~~~~ 61 (139)
+..+|++.|+|..+++.|+.- . +.. | +...|+|...|...--. . .
T Consensus 128 ~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~------~ 200 (268)
T COG1352 128 FRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-F------L 200 (268)
T ss_pred CceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-c------c
Confidence 356899999999999999852 1 100 0 01223344444332210 1 2
Q ss_pred cCCCceeEEEEcC-----CCcchHHHHHHHhhcccCCeEEEEe
Q 044253 62 FFFENFDYAFVDA-----HKDNYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 62 ~~~~~fD~If~D~-----~~~~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
. .||+|||-= +...-..+++.....|+|||++++-
T Consensus 201 ~---~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 201 G---KFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred C---CCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 3 799999842 2223356788888999999999984
No 240
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.49 E-value=0.19 Score=38.23 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=49.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH-HHHHhhcc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY-RETLMTLF 90 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~-~~~~~~lL 90 (139)
..|++||.|+......-...++- .|+--+.+|+...-. . .......|+||.|..+++-.+. ...+...|
T Consensus 99 G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~-Y------~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fL 168 (229)
T PF01269_consen 99 GVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEK-Y------RMLVEMVDVIFQDVAQPDQARIAALNARHFL 168 (229)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGG-G------TTTS--EEEEEEE-SSTTHHHHHHHHHHHHE
T ss_pred CcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHH-h------hcccccccEEEecCCChHHHHHHHHHHHhhc
Confidence 36999999997765555444433 468888899985422 1 1112289999999876655443 34455799
Q ss_pred cCCeEEEE
Q 044253 91 KVGGIVIY 98 (139)
Q Consensus 91 ~~gG~ii~ 98 (139)
++||.+++
T Consensus 169 k~gG~~~i 176 (229)
T PF01269_consen 169 KPGGHLII 176 (229)
T ss_dssp EEEEEEEE
T ss_pred cCCcEEEE
Confidence 99999875
No 241
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.43 E-value=0.048 Score=42.89 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=57.9
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYR 83 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~ 83 (139)
+.+-+..+|..||+|...++...+-.++.|+ ++++.+.-|.+..+++-. .. +||.++.||+.. ...-++
T Consensus 170 aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~-----~~---kFDvfiTDPpeTi~alk~Fl 240 (354)
T COG1568 170 ALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDL-----KR---KFDVFITDPPETIKALKLFL 240 (354)
T ss_pred HhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHH-----Hh---hCCeeecCchhhHHHHHHHH
Confidence 3344456899999999999999999999999 479999999998877543 24 899999999742 122333
Q ss_pred HHHhhcccCC
Q 044253 84 ETLMTLFKVG 93 (139)
Q Consensus 84 ~~~~~lL~~g 93 (139)
..-..-|+.-
T Consensus 241 gRGI~tLkg~ 250 (354)
T COG1568 241 GRGIATLKGE 250 (354)
T ss_pred hccHHHhcCC
Confidence 3333455555
No 242
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.32 E-value=0.086 Score=41.33 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=46.3
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
.+++|+++|+|+.|+....+..+........++++||+.+. .+ . .||.++.+.+.
T Consensus 79 ~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~--d~-------P---~fd~cVsNlPy 133 (315)
T KOG0820|consen 79 AGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT--DL-------P---RFDGCVSNLPY 133 (315)
T ss_pred hcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC--CC-------c---ccceeeccCCc
Confidence 46789999999999999999998888778999999999875 11 4 69999987543
No 243
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.13 E-value=0.031 Score=47.32 Aligned_cols=78 Identities=12% Similarity=-0.017 Sum_probs=58.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-----CCcchHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-----HKDNYRNYRE 84 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-----~~~~~~~~~~ 84 (139)
+..++++||.+|.++-..+. ....+..++++++.+|.+.+-+. .+ +.|+++..- +..--++.++
T Consensus 394 RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-------~e---q~DI~VSELLGSFGDNELSPECLD 462 (649)
T KOG0822|consen 394 RKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-------RE---QADIIVSELLGSFGDNELSPECLD 462 (649)
T ss_pred CceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-------hh---hccchHHHhhccccCccCCHHHHH
Confidence 45679999999999988865 33344557999999999987421 25 799998652 2223466788
Q ss_pred HHhhcccCCeEEEE
Q 044253 85 TLMTLFKVGGIVIY 98 (139)
Q Consensus 85 ~~~~lL~~gG~ii~ 98 (139)
.+.+.|+|+|+-|-
T Consensus 463 G~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 463 GAQKFLKPDGISIP 476 (649)
T ss_pred HHHhhcCCCceEcc
Confidence 88899999998763
No 244
>PRK04148 hypothetical protein; Provisional
Probab=93.95 E-value=0.13 Score=35.93 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=45.0
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHH
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRE 84 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~ 84 (139)
...+..+..|+++|+|+++++.|+++ .++++++|.++.-..+ -. .+|+|+.-=+-......+-
T Consensus 33 ~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~------y~---~a~liysirpp~el~~~~~ 95 (134)
T PRK04148 33 KKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI------YK---NAKLIYSIRPPRDLQPFIL 95 (134)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH------Hh---cCCEEEEeCCCHHHHHHHH
Confidence 34555678999999999998888765 2688999988753333 25 7999997432223333333
Q ss_pred HHhhc
Q 044253 85 TLMTL 89 (139)
Q Consensus 85 ~~~~l 89 (139)
.+.+.
T Consensus 96 ~la~~ 100 (134)
T PRK04148 96 ELAKK 100 (134)
T ss_pred HHHHH
Confidence 34443
No 245
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=93.79 E-value=0.078 Score=40.69 Aligned_cols=27 Identities=19% Similarity=0.034 Sum_probs=20.8
Q ss_pred Cchhhhhhh--cceeEEeCCccHHHHHHH
Q 044253 3 FNLESTFFI--YFIVAIDVSRESSETGLP 29 (139)
Q Consensus 3 ~~~~~~~~~--~~v~~vD~s~~~~~~Ar~ 29 (139)
||++....+ .+|+++|++++.++.|++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~ 29 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE 29 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH
Confidence 466666666 799999999999988864
No 246
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.75 E-value=0.34 Score=39.89 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=60.7
Q ss_pred CCCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh----hhcc-cCCCceeEEEEcC-
Q 044253 1 MPFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD----EKIH-FFFENFDYAFVDA- 74 (139)
Q Consensus 1 ~~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~----~~~~-~~~~~fD~If~D~- 74 (139)
+|.|...|..+.+|+++|+++..++...+ | +..+..-+..+.+++.... +..+ ...+..|++++-.
T Consensus 22 LPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~iI~VP 93 (436)
T COG0677 22 LPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFIICVP 93 (436)
T ss_pred HHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEEEEec
Confidence 58888899999999999999998887642 2 3444444444433322111 0000 0001466666532
Q ss_pred ---------CCcchHHHHHHHhhcccCCeEEEEeCCCCCccc
Q 044253 75 ---------HKDNYRNYRETLMTLFKVGGIVIYDNTLWGGTV 107 (139)
Q Consensus 75 ---------~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~~~ 107 (139)
+.....+..+.+.+.|++|-.++++...+.|+.
T Consensus 94 TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTT 135 (436)
T COG0677 94 TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTT 135 (436)
T ss_pred CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcH
Confidence 111224456677789999999999888887654
No 247
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=93.64 E-value=0.22 Score=40.04 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=52.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc-CCCC----cEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEcCCC-------c
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV-EVDL----KINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVDAHK-------D 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~----~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D~~~-------~ 77 (139)
..+.+++||..-.++.|++..+.. +..+ .+.++.+|.... |..+... .+ -+||+|=+--.. .
T Consensus 140 I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~---~d--p~fDivScQF~~HYaFetee 214 (389)
T KOG1975|consen 140 IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF---KD--PRFDIVSCQFAFHYAFETEE 214 (389)
T ss_pred ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC---CC--CCcceeeeeeeEeeeeccHH
Confidence 457999999999999999865532 1111 478999998764 2222100 12 049998543211 1
Q ss_pred chHHHHHHHhhcccCCeEEE
Q 044253 78 NYRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii 97 (139)
.....+.-+.+.|+|||++|
T Consensus 215 ~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 215 SARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred HHHHHHHHHHhhcCCCcEEE
Confidence 12335666778999999998
No 248
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.31 E-value=0.4 Score=38.61 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=50.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|+++|++++..+.|++. |.. .++.+.-.+..+.. .+ .||+|+.-.+ ...++..++.
T Consensus 189 ~ga~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~~~------~~---~~d~ii~tv~----~~~~~~~l~~ 248 (339)
T COG1064 189 MGAEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALEAV------KE---IADAIIDTVG----PATLEPSLKA 248 (339)
T ss_pred cCCeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhHHh------Hh---hCcEEEECCC----hhhHHHHHHH
Confidence 469999999999999999864 432 33433222233333 24 5999988765 3356778899
Q ss_pred ccCCeEEEEeCCC
Q 044253 90 FKVGGIVIYDNTL 102 (139)
Q Consensus 90 L~~gG~ii~~~~~ 102 (139)
|++||.+++-...
T Consensus 249 l~~~G~~v~vG~~ 261 (339)
T COG1064 249 LRRGGTLVLVGLP 261 (339)
T ss_pred HhcCCEEEEECCC
Confidence 9999999876555
No 249
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.15 E-value=0.57 Score=37.36 Aligned_cols=84 Identities=11% Similarity=0.014 Sum_probs=56.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEE--EeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCc-----chHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINL--MESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKD-----NYRNY 82 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~--~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~-----~~~~~ 82 (139)
..+-+.||+|.++++.+.+++....+ +.+++ +++|+.+.+..+..... .. ...+++.-+ ... .-..+
T Consensus 104 ~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~-~~---~~r~~~flGSsiGNf~~~ea~~f 178 (319)
T TIGR03439 104 SVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPEN-RS---RPTTILWLGSSIGNFSRPEAAAF 178 (319)
T ss_pred CceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhcccccc-cC---CccEEEEeCccccCCCHHHHHHH
Confidence 35679999999999999999984444 24555 89999887654421000 12 356666544 222 22456
Q ss_pred HHHHhh-cccCCeEEEEe
Q 044253 83 RETLMT-LFKVGGIVIYD 99 (139)
Q Consensus 83 ~~~~~~-lL~~gG~ii~~ 99 (139)
+..+.+ .|++||.+++-
T Consensus 179 L~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 179 LAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHHHHHhhCCCCCEEEEe
Confidence 777777 89999999884
No 250
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.13 E-value=0.055 Score=42.16 Aligned_cols=31 Identities=39% Similarity=0.612 Sum_probs=26.2
Q ss_pred ceeEEE----EcCCCcchHHHHHHHhhcccCCeEEE
Q 044253 66 NFDYAF----VDAHKDNYRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 66 ~fD~If----~D~~~~~~~~~~~~~~~lL~~gG~ii 97 (139)
+||.|+ +|.. .+..++++.+.++|||||++|
T Consensus 165 ~~d~VvT~FFIDTA-~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 165 SFDVVVTCFFIDTA-ENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cccEEEEEEEeech-HHHHHHHHHHHHHhccCCEEE
Confidence 799884 6775 467889999999999999887
No 251
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=92.76 E-value=1.7 Score=27.78 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=50.5
Q ss_pred eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHHHhhccc
Q 044253 14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRETLMTLFK 91 (139)
Q Consensus 14 v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~~~~lL~ 91 (139)
|..+|-++...+..++.++..|+. .-....+..+.+..+. .. .||+|++|... .....+++.+...-
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~--~v~~~~~~~~~~~~~~-----~~---~~d~iiid~~~~~~~~~~~~~~i~~~~- 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE--EVTTASSGEEALELLK-----KH---PPDLIIIDLELPDGDGLELLEQIRQIN- 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE--EEEEESSHHHHHHHHH-----HS---TESEEEEESSSSSSBHHHHHHHHHHHT-
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEECCHHHHHHHhc-----cc---CceEEEEEeeecccccccccccccccc-
Confidence 467899999999999999977762 2335667777776654 35 89999999643 34456667665444
Q ss_pred CCeEEE
Q 044253 92 VGGIVI 97 (139)
Q Consensus 92 ~gG~ii 97 (139)
++..++
T Consensus 70 ~~~~ii 75 (112)
T PF00072_consen 70 PSIPII 75 (112)
T ss_dssp TTSEEE
T ss_pred ccccEE
Confidence 444444
No 252
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=92.12 E-value=0.15 Score=41.40 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=61.2
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE-cC--CCcchHHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV-DA--HKDNYRNYRETL 86 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~-D~--~~~~~~~~~~~~ 86 (139)
+...+++++.++..+..+.......++.++..++.+|..... .. +. .||.+.. |. ..+.....++++
T Consensus 132 ~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~--fe-----dn---~fd~v~~ld~~~~~~~~~~~y~Ei 201 (364)
T KOG1269|consen 132 KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP--FE-----DN---TFDGVRFLEVVCHAPDLEKVYAEI 201 (364)
T ss_pred ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC--CC-----cc---ccCcEEEEeecccCCcHHHHHHHH
Confidence 457899999999999999888888888777777766665442 11 45 8999864 54 334567788899
Q ss_pred hhcccCCeEEEEeCC
Q 044253 87 MTLFKVGGIVIYDNT 101 (139)
Q Consensus 87 ~~lL~~gG~ii~~~~ 101 (139)
.+.++|||.+++...
T Consensus 202 ~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 202 YRVLKPGGLFIVKEW 216 (364)
T ss_pred hcccCCCceEEeHHH
Confidence 999999999987544
No 253
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=92.01 E-value=0.46 Score=36.53 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=44.4
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHH-
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRE- 84 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~- 84 (139)
+...+.+++|+.++-.+..++|+.. ..++++++.|+.+.+..+... .. +=-+|++||+. .+|....+
T Consensus 77 R~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~allPP---~~---rRglVLIDPpYE~~~dy~~v~~~ 147 (245)
T PF04378_consen 77 REQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALLPP---PE---RRGLVLIDPPYEQKDDYQRVVDA 147 (245)
T ss_dssp -TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-S----TT---S-EEEEE-----STTHHHHHHHH
T ss_pred CccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhCCC---CC---CCeEEEECCCCCCchHHHHHHHH
Confidence 4456899999999999999998864 358999999999988765422 23 44599999964 34554444
Q ss_pred --HHhhcccCCeEEE
Q 044253 85 --TLMTLFKVGGIVI 97 (139)
Q Consensus 85 --~~~~lL~~gG~ii 97 (139)
.+.+....|-+++
T Consensus 148 l~~a~kR~~~G~~~i 162 (245)
T PF04378_consen 148 LAKALKRWPTGVYAI 162 (245)
T ss_dssp HHHHHHH-TTSEEEE
T ss_pred HHHHHHhcCCcEEEE
Confidence 3444554444444
No 254
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.87 E-value=0.45 Score=38.86 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=46.8
Q ss_pred cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEE-EcC----CCcchHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253 34 VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAF-VDA----HKDNYRNYRETLMTLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 34 ~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If-~D~----~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~ 105 (139)
.++ +++++++++..+++.+.. .+ ++|.++ +|. +.......++.+.+.++|||.+++-+.....
T Consensus 272 ~~~-drv~i~t~si~~~L~~~~-----~~---s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLP-----PG---SFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred cCC-CeEEEEeccHHHHHHhCC-----CC---CeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 355 799999999999998653 35 899765 454 1234566778888999999999987665543
No 255
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.23 E-value=0.45 Score=34.83 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=51.9
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHHH------------HHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeE
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLPI------------IKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDY 69 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n------------~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~ 69 (139)
|.|+..|..+.+|+++|++++.++...+- +++..-..+.++- .|..+.+ . ..|+
T Consensus 14 ~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----------~---~adv 79 (185)
T PF03721_consen 14 PLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI----------K---DADV 79 (185)
T ss_dssp HHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----------H---H-SE
T ss_pred HHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----------h---ccce
Confidence 45666777788999999999988876531 1111101122222 2222221 2 5788
Q ss_pred EEEcCCC----------cchHHHHHHHhhcccCCeEEEEeCCCCCcccc
Q 044253 70 AFVDAHK----------DNYRNYRETLMTLFKVGGIVIYDNTLWGGTVA 108 (139)
Q Consensus 70 If~D~~~----------~~~~~~~~~~~~lL~~gG~ii~~~~~~~~~~~ 108 (139)
+|+..+- .......+.+.+.++++.++++.-...-|+..
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 8875321 12345667777899999999987777766544
No 256
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.11 E-value=0.5 Score=37.80 Aligned_cols=80 Identities=14% Similarity=0.031 Sum_probs=52.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeC-ChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~-da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.++|+++|++++.++.|++... . +.+..... +.......+.. .. .+|++|--.. ....++++.+.
T Consensus 193 a~~Viv~d~~~~Rl~~A~~~~g---~-~~~~~~~~~~~~~~~~~~t~----g~---g~D~vie~~G---~~~~~~~ai~~ 258 (350)
T COG1063 193 ASVVIVVDRSPERLELAKEAGG---A-DVVVNPSEDDAGAEILELTG----GR---GADVVIEAVG---SPPALDQALEA 258 (350)
T ss_pred CceEEEeCCCHHHHHHHHHhCC---C-eEeecCccccHHHHHHHHhC----CC---CCCEEEECCC---CHHHHHHHHHH
Confidence 4689999999999999987532 1 22222222 33333323211 23 5999987665 34468889999
Q ss_pred ccCCeEEEEeCCCCC
Q 044253 90 FKVGGIVIYDNTLWG 104 (139)
Q Consensus 90 L~~gG~ii~~~~~~~ 104 (139)
++++|.+++-.+.-.
T Consensus 259 ~r~gG~v~~vGv~~~ 273 (350)
T COG1063 259 LRPGGTVVVVGVYGG 273 (350)
T ss_pred hcCCCEEEEEeccCC
Confidence 999999987555443
No 257
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=90.66 E-value=0.98 Score=36.75 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=55.5
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHH-hhh--cccCCCceeEEEEcCCCcc---------h-
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLK-DEK--IHFFFENFDYAFVDAHKDN---------Y- 79 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~-~~~--~~~~~~~fD~If~D~~~~~---------~- 79 (139)
.|++=|.+...+...+.-+..... ..+.+...|+..+ +...- ..+ ... .||.|++|.+... +
T Consensus 185 ~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~-p~~~~~~~~~~~~~---~fDrVLvDVPCS~Dgt~rk~~~i~ 259 (375)
T KOG2198|consen 185 YVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLF-PNIYLKDGNDKEQL---KFDRVLVDVPCSGDGTLRKNPNIW 259 (375)
T ss_pred eeEecccCHHHHHHHHHHHhccCC-cceeeecccceec-cccccccCchhhhh---hcceeEEecccCCCcccccCchHh
Confidence 688999999999999887766554 3566666665543 21100 000 024 7999999964321 0
Q ss_pred ----------------HHHHHHHhhcccCCeEEEEeCCCC
Q 044253 80 ----------------RNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 80 ----------------~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
..++...+++|++||.+|+.....
T Consensus 260 ~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 260 KEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 124455668999999999876555
No 258
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=90.64 E-value=2.1 Score=31.92 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=47.1
Q ss_pred cceeEEeCCccHHHHHHHHHH-------HcCC-CCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCc--ch
Q 044253 12 YFIVAIDVSRESSETGLPIIK-------KVEV-DLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKD--NY 79 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~-------~~g~-~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~--~~ 79 (139)
.++++||+.+...+.|+...+ ..|. ..++++.++|..+. ...+ -. .-|+||++.-.- ..
T Consensus 67 ~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~------~s---~AdvVf~Nn~~F~~~l 137 (205)
T PF08123_consen 67 KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI------WS---DADVVFVNNTCFDPDL 137 (205)
T ss_dssp SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH------GH---C-SEEEE--TTT-HHH
T ss_pred cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh------hc---CCCEEEEeccccCHHH
Confidence 359999999999998876443 3444 35789999998754 2222 13 689999986421 12
Q ss_pred HHHHHHHhhcccCCeEEEEeCCC
Q 044253 80 RNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
...+...+..|++|..||.-.-+
T Consensus 138 ~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 138 NLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp HHHHHHHHTTS-TT-EEEESS-S
T ss_pred HHHHHHHHhcCCCCCEEEECCCc
Confidence 22345555788999998864333
No 259
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.59 E-value=1.6 Score=33.00 Aligned_cols=77 Identities=18% Similarity=0.109 Sum_probs=52.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH-HHHHhhcc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY-RETLMTLF 90 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~-~~~~~~lL 90 (139)
..+++||.++......-..+++- +|+--+.+||...-+- ..- -+ ..|+||.|..+++-.++ ...+...|
T Consensus 101 G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y-~~~---Ve---~VDviy~DVAQp~Qa~I~~~Na~~FL 170 (231)
T COG1889 101 GRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKY-RHL---VE---KVDVIYQDVAQPNQAEILADNAEFFL 170 (231)
T ss_pred CcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHh-hhh---cc---cccEEEEecCCchHHHHHHHHHHHhc
Confidence 45999999999877665555442 4688888998864321 100 24 89999999877655444 34556799
Q ss_pred cCCeEEEE
Q 044253 91 KVGGIVIY 98 (139)
Q Consensus 91 ~~gG~ii~ 98 (139)
++||.+++
T Consensus 171 k~~G~~~i 178 (231)
T COG1889 171 KKGGYVVI 178 (231)
T ss_pred ccCCeEEE
Confidence 99996543
No 260
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.37 E-value=0.21 Score=33.74 Aligned_cols=41 Identities=17% Similarity=0.481 Sum_probs=27.6
Q ss_pred ceeEEEEcCCC---------cchHHHHHHHhhcccCCeEEEEeCCCCCcc
Q 044253 66 NFDYAFVDAHK---------DNYRNYRETLMTLFKVGGIVIYDNTLWGGT 106 (139)
Q Consensus 66 ~fD~If~D~~~---------~~~~~~~~~~~~lL~~gG~ii~~~~~~~~~ 106 (139)
+||+|++=... .....+|..+..+|+|||.+|++-=-|...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY 50 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSY 50 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHH
Confidence 48999875421 134568899999999999999976666543
No 261
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=90.35 E-value=0.17 Score=40.19 Aligned_cols=54 Identities=11% Similarity=-0.100 Sum_probs=45.2
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
....|+++|.+|.+++..|+|++.+++.++..++.||-+..-. .. ..|.|.+.-
T Consensus 217 gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~---~AdrVnLGL 270 (351)
T KOG1227|consen 217 GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RL---RADRVNLGL 270 (351)
T ss_pred CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cc---cchheeecc
Confidence 3567999999999999999999999998899999998876532 35 788898764
No 262
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=90.08 E-value=1.3 Score=28.89 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=39.7
Q ss_pred ceeEEEEcCCCcchHHHHHHHhhcccCCeEEEEeCC---CCCccccccccc---CchhhhhchHHHHHHHHHHhhCCCC
Q 044253 66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNT---LWGGTVAMAEEQ---VPEILRSTRQPNWNLDKLFASSGPI 138 (139)
Q Consensus 66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (139)
.||++++|.....-++.+-.+...++-||++++--- .|....-.-... .|.. .....=++.|.+.+++++.+
T Consensus 11 e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~-~~~~~F~~rf~~~L~~~~~i 88 (92)
T PF08351_consen 11 EFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYT-DVTPRFIRRFIRSLQSDPGI 88 (92)
T ss_dssp -BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS--B--HHHHHHHHHHHCCSTTS
T ss_pred ccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCC-cccHHHHHHHHHHHHHCcCC
Confidence 799999999776678889999999999999987311 121111111111 1111 33455678888888888764
No 263
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=89.73 E-value=1.8 Score=27.73 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=53.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-HHhhHHhhhcc-cCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-LDQLLKDEKIH-FFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-l~~~~~~~~~~-~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
..++++|.++.++..++..... .....+.+..++.... ++ +. . . .||++....... .....+..+.
T Consensus 73 ~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-----~~~---~~d~~~~~~~~~~~~~~~~~~~~~ 142 (257)
T COG0500 73 AYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLP-FE-----DSA---SFDLVISLLVLHLLPPAKALRELL 142 (257)
T ss_pred ceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCC-CC-----CCC---ceeEEeeeeehhcCCHHHHHHHHH
Confidence 3688899999999996655543 2211167787777652 22 11 1 3 699994433211 1356778888
Q ss_pred hcccCCeEEEEeCCCCCc
Q 044253 88 TLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~~~ 105 (139)
+.++++|.+++.......
T Consensus 143 ~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 143 RVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred HhcCCCcEEEEEeccCCC
Confidence 999999999886555433
No 264
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=89.50 E-value=0.59 Score=31.86 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=30.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRAL 48 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~ 48 (139)
.+|+++|.++++.+.+++|++.+++. +++++...+.
T Consensus 23 ~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~ 58 (143)
T TIGR01444 23 GRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVG 58 (143)
T ss_pred CEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeee
Confidence 47999999999999999999999884 5888876554
No 265
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=89.10 E-value=0.72 Score=34.52 Aligned_cols=84 Identities=11% Similarity=-0.058 Sum_probs=49.6
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh-hcccCCCceeEEEEc-----CCCcchHHHHHHH
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE-KIHFFFENFDYAFVD-----AHKDNYRNYRETL 86 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~-~~~~~~~~fD~If~D-----~~~~~~~~~~~~~ 86 (139)
+=.-.|.++....-.+.++...++.+-..-+.-|+.+---...... .... +||.||+- .+......+|..+
T Consensus 51 ~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~---~~D~i~~~N~lHI~p~~~~~~lf~~a 127 (204)
T PF06080_consen 51 TWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE---SFDAIFCINMLHISPWSAVEGLFAGA 127 (204)
T ss_pred EEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC---CcceeeehhHHHhcCHHHHHHHHHHH
Confidence 3455688888888888888887764322223333332200000000 0024 79999973 1223446688888
Q ss_pred hhcccCCeEEEEe
Q 044253 87 MTLFKVGGIVIYD 99 (139)
Q Consensus 87 ~~lL~~gG~ii~~ 99 (139)
.++|++||.+++-
T Consensus 128 ~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 128 ARLLKPGGLLFLY 140 (204)
T ss_pred HHhCCCCCEEEEe
Confidence 8999999999863
No 266
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=88.67 E-value=0.91 Score=34.28 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=24.8
Q ss_pred ceeEEEEcCC--CcchHHHHHHHhhcccCCeEEEEeC
Q 044253 66 NFDYAFVDAH--KDNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 66 ~fD~If~D~~--~~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
+.|+++.--. ..++.+++.++.+.|++||.+.+-.
T Consensus 122 svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 122 SVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp -EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence 5666654432 2368899999999999999998743
No 267
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=87.03 E-value=0.94 Score=32.64 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=47.5
Q ss_pred eeEEeCCccHHHHH---HHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 14 IVAIDVSRESSETG---LPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 14 v~~vD~s~~~~~~A---r~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
+|+.|...+..+.- .+|++...-..-..+.--|+...-...... .. +||.|+..-|+..
T Consensus 26 ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~---~~---~FDrIiFNFPH~G~~~~~~~~~i~~ 99 (166)
T PF10354_consen 26 ATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLK---NQ---RFDRIIFNFPHVGGGSEDGKRNIRL 99 (166)
T ss_pred EeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccccccccc---CC---cCCEEEEeCCCCCCCccchhHHHHH
Confidence 45566666555543 366665533222233445666543222111 35 8999998754322
Q ss_pred ----hHHHHHHHhhcccCCeEEEEeC
Q 044253 79 ----YRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 79 ----~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
...+|..+.++|+++|.|.+.-
T Consensus 100 nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 100 NRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2456778889999999998753
No 268
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=86.57 E-value=0.68 Score=35.84 Aligned_cols=95 Identities=18% Similarity=0.138 Sum_probs=55.5
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEE----------------------------EEeCChHHHHHhhHHh
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKIN----------------------------LMESRALPALDQLLKD 57 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~----------------------------~~~~da~~~l~~~~~~ 57 (139)
.++.+..+|++.|-.+...+..+++++.-+--|.-. ++.+|+... ..
T Consensus 74 sa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~-~p---- 148 (256)
T PF01234_consen 74 SACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQP-NP---- 148 (256)
T ss_dssp TGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSS-ST----
T ss_pred hHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCC-CC----
Confidence 334455679999999999998888876543222211 222222211 00
Q ss_pred hhcc-cCCCceeEEEEcC-------CCcchHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253 58 EKIH-FFFENFDYAFVDA-------HKDNYRNYRETLMTLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 58 ~~~~-~~~~~fD~If~D~-------~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~ 105 (139)
.++. ..+.+||+|++-. +...|...+..+..+|||||.+++-.++-..
T Consensus 149 l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t 204 (256)
T PF01234_consen 149 LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST 204 (256)
T ss_dssp TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce
Confidence 0000 0011499998642 3456777888899999999999987666544
No 269
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=86.12 E-value=3.2 Score=32.35 Aligned_cols=70 Identities=16% Similarity=0.040 Sum_probs=46.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---CCcchHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---HKDNYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---~~~~~~~~~~~~~~ 88 (139)
.+|++.|.|+.|.... .+-|+ +++ +..+. ... +. +||+|-+== ....+..+++.+.+
T Consensus 117 ~~v~aTE~S~~Mr~rL----~~kg~----~vl--~~~~w-~~~------~~---~fDvIscLNvLDRc~~P~~LL~~i~~ 176 (265)
T PF05219_consen 117 KEVYATEASPPMRWRL----SKKGF----TVL--DIDDW-QQT------DF---KFDVISCLNVLDRCDRPLTLLRDIRR 176 (265)
T ss_pred ceEEeecCCHHHHHHH----HhCCC----eEE--ehhhh-hcc------CC---ceEEEeehhhhhccCCHHHHHHHHHH
Confidence 4699999999885544 44554 444 33332 221 35 899997621 23356778999999
Q ss_pred cccCCeEEEEeCC
Q 044253 89 LFKVGGIVIYDNT 101 (139)
Q Consensus 89 lL~~gG~ii~~~~ 101 (139)
.|+|+|++++--+
T Consensus 177 ~l~p~G~lilAvV 189 (265)
T PF05219_consen 177 ALKPNGRLILAVV 189 (265)
T ss_pred HhCCCCEEEEEEE
Confidence 9999999987544
No 270
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=85.94 E-value=2.8 Score=32.70 Aligned_cols=92 Identities=10% Similarity=-0.022 Sum_probs=55.2
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhccc---CCCceeEEEEcC-----CCcchHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHF---FFENFDYAFVDA-----HKDNYRN 81 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~---~~~~fD~If~D~-----~~~~~~~ 81 (139)
..++|+-||+||-.+..++..+....- .+..++++|+.+.-.-+....- .. +..+.=++++.. +..+...
T Consensus 94 P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~-~~~lD~~rPVavll~~vLh~v~D~~dp~~ 171 (267)
T PF04672_consen 94 PDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEV-RGLLDFDRPVAVLLVAVLHFVPDDDDPAG 171 (267)
T ss_dssp TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHH-HCC--TTS--EEEECT-GGGS-CGCTHHH
T ss_pred CCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHH-HhcCCCCCCeeeeeeeeeccCCCccCHHH
Confidence 467899999999999999999876653 3689999999875221210000 12 001333444332 3345678
Q ss_pred HHHHHhhcccCCeEEEEeCCCC
Q 044253 82 YRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
++..+.+.|.+|.++++.+...
T Consensus 172 iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 172 IVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp HHHHHHCCS-TT-EEEEEEEB-
T ss_pred HHHHHHHhCCCCceEEEEecCC
Confidence 8999999999999999987754
No 271
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=85.59 E-value=2.8 Score=32.60 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=48.2
Q ss_pred eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh-hHHhhhcccCCCceeEEEEcCCCcchHHHHH-HHhhccc
Q 044253 14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ-LLKDEKIHFFFENFDYAFVDAHKDNYRNYRE-TLMTLFK 91 (139)
Q Consensus 14 v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~-~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~-~~~~lL~ 91 (139)
|++||.|...-...-...++- .+|--+..|+...-+. +. -. -.|+||.|.++++...++. .+...|+
T Consensus 184 VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRml-----Vg---mVDvIFaDvaqpdq~RivaLNA~~FLk 252 (317)
T KOG1596|consen 184 VYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRML-----VG---MVDVIFADVAQPDQARIVALNAQYFLK 252 (317)
T ss_pred EEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeee-----ee---eEEEEeccCCCchhhhhhhhhhhhhhc
Confidence 899999987655444333322 3566677888764321 11 23 6899999987655444332 3446999
Q ss_pred CCeEEEEe
Q 044253 92 VGGIVIYD 99 (139)
Q Consensus 92 ~gG~ii~~ 99 (139)
+||.+++.
T Consensus 253 ~gGhfvis 260 (317)
T KOG1596|consen 253 NGGHFVIS 260 (317)
T ss_pred cCCeEEEE
Confidence 99998864
No 272
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.55 E-value=4.8 Score=32.47 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=49.1
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~ 85 (139)
+.|+..++|+.+|.++..++.||+ .|...-...-..+..+.+.+.-++.-... .+|+.|--.. ...-++.
T Consensus 189 Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~---~~d~~~dCsG---~~~~~~a 258 (354)
T KOG0024|consen 189 AKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALGKK---QPDVTFDCSG---AEVTIRA 258 (354)
T ss_pred HHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcccc---CCCeEEEccC---chHHHHH
Confidence 345556799999999999999998 35531111122221222222222211024 6898886553 2345677
Q ss_pred HhhcccCCeEEEE
Q 044253 86 LMTLFKVGGIVIY 98 (139)
Q Consensus 86 ~~~lL~~gG~ii~ 98 (139)
....++.||.++.
T Consensus 259 ai~a~r~gGt~vl 271 (354)
T KOG0024|consen 259 AIKATRSGGTVVL 271 (354)
T ss_pred HHHHhccCCEEEE
Confidence 7888999999664
No 273
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.35 E-value=5.6 Score=30.59 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=48.4
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHH-------HHcCC-C--------CcEEEEeCChHHHHHhhHHhhhcccCCCce
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPII-------KKVEV-D--------LKINLMESRALPALDQLLKDEKIHFFFENF 67 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~-------~~~g~-~--------~~i~~~~~da~~~l~~~~~~~~~~~~~~~f 67 (139)
+...+..+.+|+.+|++++.++.+++.+ .+.|. . .++++ ..|.. .+ . ..
T Consensus 19 a~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~----~~-------~---~a 83 (282)
T PRK05808 19 AQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD----DL-------K---DA 83 (282)
T ss_pred HHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH----Hh-------c---cC
Confidence 4445556779999999999998766433 22231 1 02222 22321 11 3 68
Q ss_pred eEEEEcCCCcc--hHHHHHHHhhcccCCeEEEE
Q 044253 68 DYAFVDAHKDN--YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 68 D~If~D~~~~~--~~~~~~~~~~lL~~gG~ii~ 98 (139)
|+|+.-.+... ...++..+.+.++++.+++.
T Consensus 84 DlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 84 DLVIEAATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred CeeeecccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 99998764322 24677888888888887754
No 274
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=85.30 E-value=0.92 Score=36.38 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=26.3
Q ss_pred ceeEEE----EcCCCcchHHHHHHHhhcccCCeEEE
Q 044253 66 NFDYAF----VDAHKDNYRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 66 ~fD~If----~D~~~~~~~~~~~~~~~lL~~gG~ii 97 (139)
.||+|+ +|... +..++++++.+.|+|||+++
T Consensus 259 ~~d~VvTcfFIDTa~-NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 259 SYDVVVTCFFIDTAH-NILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccceEEEEEEeechH-HHHHHHHHHHHhccCCcEEE
Confidence 699884 67764 67889999999999999987
No 275
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=85.16 E-value=2.7 Score=35.44 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=60.3
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------------- 77 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------------- 77 (139)
...++.|+++.....|+-|+-..|+...+.+.++|...-..... + +... +||+|+..|+..
T Consensus 215 ~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~-~~~~---~~D~viaNPPf~~~~~~~~~~~~~~~ 289 (489)
T COG0286 215 IFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD-K-DDKG---KFDFVIANPPFSGKGWGGDLLESEQD 289 (489)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccc-c-CCcc---ceeEEEeCCCCCcccccccccccccc
Confidence 45899999999999999999999985456777777665421100 0 0024 799999877432
Q ss_pred --------------chHHHHHHHhhcccCCe---EEEEeCCCCCcc
Q 044253 78 --------------NYRNYRETLMTLFKVGG---IVIYDNTLWGGT 106 (139)
Q Consensus 78 --------------~~~~~~~~~~~lL~~gG---~ii~~~~~~~~~ 106 (139)
.+..++..+...|+||| +++.+++++.|.
T Consensus 290 ~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~ 335 (489)
T COG0286 290 ERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGG 335 (489)
T ss_pred ccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCC
Confidence 01345667778999866 344566666554
No 276
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=85.04 E-value=6.7 Score=29.53 Aligned_cols=86 Identities=10% Similarity=0.177 Sum_probs=54.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
.+|.++|+|-...+-+... ..+|.++.|+..+.. .+.... +++- +-=+|++|+++. ....-++.+.
T Consensus 98 ~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~-~~~y---~kIfvilDsdHs~~hvLAel~~~~ 167 (237)
T COG3510 98 FKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRL-KNEY---PKIFVILDSDHSMEHVLAELKLLA 167 (237)
T ss_pred ceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHH-hcCC---CcEEEEecCCchHHHHHHHHHHhh
Confidence 4799999998776654322 357999999876431 111100 1011 222556677643 2344566677
Q ss_pred hcccCCeEEEEeCCCCCccc
Q 044253 88 TLFKVGGIVIYDNTLWGGTV 107 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~~~~~ 107 (139)
++|..|-++++.+....+..
T Consensus 168 pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 168 PLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred hHhhcCceEEEecccccCCC
Confidence 89999999999998887765
No 277
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=84.73 E-value=0.94 Score=36.50 Aligned_cols=61 Identities=13% Similarity=0.279 Sum_probs=45.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH-HhhHHhhhcccCCCceeEEEEcCC
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL-DQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l-~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
...-.+.|++...+..|++|+.++++.+++.+++.+..+.+ ....+..+ +. .||++.++|+
T Consensus 126 n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~-e~---~ydFcMcNPP 187 (419)
T KOG2912|consen 126 NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEES-EI---IYDFCMCNPP 187 (419)
T ss_pred cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCc-cc---eeeEEecCCc
Confidence 35678999999999999999999999999999998776553 21111100 23 5999999875
No 278
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=84.70 E-value=3.9 Score=31.81 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=54.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~~~~~~~~ 87 (139)
.-++.++|..|+=....+.|+. + ..++++.++|....+...... .+ +=-+|++||+.. +|..+.+.+.
T Consensus 110 qDRl~l~ELHp~D~~~L~~~f~--~-d~~vrv~~~DG~~~l~a~LPP---~e---rRglVLIDPPfE~~~eY~rvv~~l~ 180 (279)
T COG2961 110 QDRLVLTELHPSDAPLLRNNFA--G-DRRVRVLRGDGFLALKAHLPP---KE---RRGLVLIDPPFELKDEYQRVVEALA 180 (279)
T ss_pred hceeeeeecCccHHHHHHHHhC--C-CcceEEEecCcHHHHhhhCCC---CC---cceEEEeCCCcccccHHHHHHHHHH
Confidence 4579999999999999999987 2 358999999999887654321 23 456999999753 4555544433
Q ss_pred ---hcccCCeEEE
Q 044253 88 ---TLFKVGGIVI 97 (139)
Q Consensus 88 ---~lL~~gG~ii 97 (139)
+....|.+.|
T Consensus 181 ~~~kRf~~g~yai 193 (279)
T COG2961 181 EAYKRFATGTYAI 193 (279)
T ss_pred HHHHhhcCceEEE
Confidence 4444444433
No 279
>PTZ00357 methyltransferase; Provisional
Probab=84.62 E-value=1.4 Score=39.14 Aligned_cols=82 Identities=9% Similarity=-0.057 Sum_probs=49.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcC-C-------CCcEEEEeCChHHHHHhhHHh-h---hcccCCCceeEEEEcC----
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVE-V-------DLKINLMESRALPALDQLLKD-E---KIHFFFENFDYAFVDA---- 74 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g-~-------~~~i~~~~~da~~~l~~~~~~-~---~~~~~~~~fD~If~D~---- 74 (139)
..+|++||.++.++...+.+..... . .++++++++|.+.+-...... . ...+ ++|+|+..-
T Consensus 728 kVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~g---KaDIVVSELLGSF 804 (1072)
T PTZ00357 728 RLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFG---LCDLIVSELLGSL 804 (1072)
T ss_pred cEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccccccccccccc---ccceehHhhhccc
Confidence 3579999999887766655543221 1 346999999999872110000 0 0012 699999753
Q ss_pred -CCcchHHHHHHHhhcccC----CeE
Q 044253 75 -HKDNYRNYRETLMTLFKV----GGI 95 (139)
Q Consensus 75 -~~~~~~~~~~~~~~lL~~----gG~ 95 (139)
+..--++.++.+.+.||+ +|+
T Consensus 805 GDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 805 GDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccCCHHHHHHHHHhhhhhcccccc
Confidence 222235567777777775 776
No 280
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=84.33 E-value=6.8 Score=29.27 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=68.8
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------chH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------NYR 80 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------~~~ 80 (139)
+..++.+||+|=+++..+..- ..+++++.|.++.-. +... -. .||.|+.-.... .+.
T Consensus 20 A~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~-~a~~---l~---g~DaVIsA~~~~~~~~~~~~~ 82 (211)
T COG2910 20 ALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTS-LASD---LA---GHDAVISAFGAGASDNDELHS 82 (211)
T ss_pred HHhCCCeeEEEEeChHhcccc----------ccceeecccccChhh-hHhh---hc---CCceEEEeccCCCCChhHHHH
Confidence 445677899998887644321 357889999987632 2111 14 799999743211 122
Q ss_pred HHHHHHhhcccCCeE---EEEeCC----CCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253 81 NYRETLMTLFKVGGI---VIYDNT----LWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI 138 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~---ii~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (139)
.-.+.+...|+.-|. +++-.. .-.|+-....+..|+.|.+.+.+..+|++.++....+
T Consensus 83 k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~~A~~~ae~L~~Lr~~~~l 147 (211)
T COG2910 83 KSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKPEALAQAEFLDSLRAEKSL 147 (211)
T ss_pred HHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHHHHHHHHHHHHHHHhhccCc
Confidence 334445555544221 222111 1123444455557899999999999999999887654
No 281
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.19 E-value=1.3 Score=34.17 Aligned_cols=63 Identities=11% Similarity=0.198 Sum_probs=46.1
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChH-HHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRAL-PALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~-~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
.++.+-++.|+|+.+++.|+.++..+ ++...|++....=. ..+..+... .+ .||+..++|+..
T Consensus 100 eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~---nE---~yd~tlCNPPFh 164 (292)
T COG3129 100 EYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGK---NE---RYDATLCNPPFH 164 (292)
T ss_pred eecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccc---cc---eeeeEecCCCcc
Confidence 35678899999999999999999988 77777888754333 333333211 35 899999998753
No 282
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.17 E-value=4.8 Score=32.42 Aligned_cols=72 Identities=7% Similarity=0.048 Sum_probs=52.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc---CCCcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD---AHKDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D---~~~~~~~~~~~~~~ 87 (139)
++.|+-+|+|...+.+....+ ..|++.+..+...+.... . +.|+|+-- +....+.-..++..
T Consensus 191 gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~---~aDlvIgaVLIpgakaPkLvt~e~v 255 (371)
T COG0686 191 GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------K---KADLVIGAVLIPGAKAPKLVTREMV 255 (371)
T ss_pred CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------h---hccEEEEEEEecCCCCceehhHHHH
Confidence 568999999999888877654 257899988888765443 3 68888743 23334444677788
Q ss_pred hcccCCeEEE
Q 044253 88 TLFKVGGIVI 97 (139)
Q Consensus 88 ~lL~~gG~ii 97 (139)
+.++||++|+
T Consensus 256 k~MkpGsViv 265 (371)
T COG0686 256 KQMKPGSVIV 265 (371)
T ss_pred HhcCCCcEEE
Confidence 9999999985
No 283
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.13 E-value=3.9 Score=32.09 Aligned_cols=72 Identities=18% Similarity=0.102 Sum_probs=43.6
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV 92 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~ 92 (139)
+|++++.+++..+.+++ .|...-+.....+..+... . .. .+|+||--... ...++.+.+.|++
T Consensus 196 ~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~-~------~g---~~D~vid~~G~---~~~~~~~~~~l~~ 258 (343)
T PRK09880 196 EIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKA-E------KG---YFDVSFEVSGH---PSSINTCLEVTRA 258 (343)
T ss_pred EEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhc-c------CC---CCCEEEECCCC---HHHHHHHHHHhhc
Confidence 68999999999888865 4542112211222222211 1 23 59988754432 2346677889999
Q ss_pred CeEEEEeCC
Q 044253 93 GGIVIYDNT 101 (139)
Q Consensus 93 gG~ii~~~~ 101 (139)
||.++.-..
T Consensus 259 ~G~iv~~G~ 267 (343)
T PRK09880 259 KGVMVQVGM 267 (343)
T ss_pred CCEEEEEcc
Confidence 999986543
No 284
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=83.63 E-value=4.1 Score=34.20 Aligned_cols=83 Identities=13% Similarity=0.096 Sum_probs=46.8
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc-CCCcchH
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD-AHKDNYR 80 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D-~~~~~~~ 80 (139)
++|++.+..+.+|+..|++++..+...+.....|. .++ ...+..+++..+ . ..|+|++- ++.....
T Consensus 15 ~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~--~i~-~~~s~~e~v~~l-------~---~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 15 NLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT--RVK-GYHTLEELVNSL-------K---KPRKVILLIKAGEAVD 81 (470)
T ss_pred HHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC--cce-ecCCHHHHHhcC-------C---CCCEEEEEeCChHHHH
Confidence 45677777888999999999998877654332232 111 223444444332 2 35655543 3333344
Q ss_pred HHHHHHhhcccCCeEEE
Q 044253 81 NYRETLMTLFKVGGIVI 97 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii 97 (139)
.+++.+.+.|++|-+++
T Consensus 82 ~vi~~l~~~L~~g~iII 98 (470)
T PTZ00142 82 ETIDNLLPLLEKGDIII 98 (470)
T ss_pred HHHHHHHhhCCCCCEEE
Confidence 55566666666665543
No 285
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=83.46 E-value=1.7 Score=30.77 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=16.1
Q ss_pred chhhhhhhcceeEEeCCccHHH
Q 044253 4 NLESTFFIYFIVAIDVSRESSE 25 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~ 25 (139)
|...+..+.+|..||.|+..-.
T Consensus 21 A~~la~~g~~vllvD~D~q~~~ 42 (169)
T cd02037 21 ALALAKLGYKVGLLDADIYGPS 42 (169)
T ss_pred HHHHHHcCCcEEEEeCCCCCCC
Confidence 3445556789999999987743
No 286
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=83.11 E-value=2.2 Score=32.00 Aligned_cols=78 Identities=10% Similarity=0.003 Sum_probs=51.8
Q ss_pred hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc-C--CCcchH
Q 044253 5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD-A--HKDNYR 80 (139)
Q Consensus 5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D-~--~~~~~~ 80 (139)
+++++.+ ..|++.|+++...+.++-|.+.+|+. +.+...|..- . .. .||+|+.. . ++..-.
T Consensus 95 IAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~-------~~---~~Dl~LagDlfy~~~~a~ 159 (218)
T COG3897 95 IAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---S-------PP---AFDLLLAGDLFYNHTEAD 159 (218)
T ss_pred HHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---C-------Cc---ceeEEEeeceecCchHHH
Confidence 4455554 47999999999999999999999974 8888777643 1 35 79999874 2 222233
Q ss_pred HHHHHHhhcccCCeEEEE
Q 044253 81 NYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~ 98 (139)
.++. .+..|...|..++
T Consensus 160 ~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 160 RLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred HHHH-HHHHHHhCCCEEE
Confidence 4445 4444555555443
No 287
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=83.02 E-value=6.8 Score=29.58 Aligned_cols=21 Identities=0% Similarity=-0.216 Sum_probs=16.3
Q ss_pred chhhhhhhcceeEEeCCccHH
Q 044253 4 NLESTFFIYFIVAIDVSRESS 24 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~ 24 (139)
|...+..+.+|..||.|++.-
T Consensus 23 A~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 23 CAALASDGKRVALFEADENRP 43 (231)
T ss_pred HHHHHhCCCcEEEEeCCCCCC
Confidence 445666788999999998764
No 288
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=82.95 E-value=1.7 Score=31.52 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=15.0
Q ss_pred HHHHHHhhcccCCeEEEEe
Q 044253 81 NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~ 99 (139)
.++..+.++|++||.+++.
T Consensus 37 ~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 37 EWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhcCCCeeEEEE
Confidence 3556777899999998874
No 289
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=82.95 E-value=1.1 Score=34.50 Aligned_cols=58 Identities=16% Similarity=0.013 Sum_probs=40.4
Q ss_pred CCchhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE
Q 044253 2 PFNLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV 72 (139)
Q Consensus 2 ~~~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~ 72 (139)
||++++-.. ++..+++|+|..+++.....+...+.. .++...|...-.+ .. ..|+.++
T Consensus 118 Plalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--------~~---~~DlaLl 177 (251)
T PF07091_consen 118 PLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--------KE---PADLALL 177 (251)
T ss_dssp HHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--------TS---EESEEEE
T ss_pred ceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--------CC---CcchhhH
Confidence 777777655 468999999999999999999999875 5555556544321 24 6777765
No 290
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=82.10 E-value=2.5 Score=32.36 Aligned_cols=69 Identities=6% Similarity=-0.078 Sum_probs=45.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+.+++++|+|+..++..++.+. ..++++++.+|+.++ .....- .. ....|+...+..--..++..+..
T Consensus 51 ~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~-~~~~~~---~~---~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 51 RGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKW-DLYDLL---KN---QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp HSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTS-CGGGHC---SS---SEEEEEEEETGTGHHHHHHHHHH
T ss_pred ccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhcc-ccHHhh---cC---CceEEEEEecccchHHHHHHHhh
Confidence 34789999999999999998765 346899999999875 211000 12 45678877766433455555554
No 291
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=82.00 E-value=1.7 Score=33.21 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=26.2
Q ss_pred ceeEEEEcCCCcchHHHHHHHhhcccCCeEEEE
Q 044253 66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.+|+||+-....+....++.+.+++.+++.+++
T Consensus 59 ~~D~iiv~vKs~~~~~~l~~l~~~l~~~~~iv~ 91 (293)
T TIGR00745 59 PADLVIITVKAYQTEEAAALLLPLIGKNTKVLF 91 (293)
T ss_pred CCCEEEEeccchhHHHHHHHhHhhcCCCCEEEE
Confidence 799999987655567778888888888887765
No 292
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=81.75 E-value=5.4 Score=28.02 Aligned_cols=79 Identities=16% Similarity=0.051 Sum_probs=52.5
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHH------cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKK------VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY 79 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~------~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~ 79 (139)
..+..+.+|+....+++.++..+++-.. ..+..++.+ ..|..+.+ . ..|+|++-.+....
T Consensus 17 ~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~---~ad~IiiavPs~~~ 82 (157)
T PF01210_consen 17 LLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E---DADIIIIAVPSQAH 82 (157)
T ss_dssp HHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T---T-SEEEE-S-GGGH
T ss_pred HHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C---cccEEEecccHHHH
Confidence 3455567899999999888877764321 112234544 45665543 2 57899998887788
Q ss_pred HHHHHHHhhcccCCeEEEE
Q 044253 80 RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~ 98 (139)
..+++.+.+.++++-.++.
T Consensus 83 ~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 83 REVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp HHHHHHHTTTSHTT-EEEE
T ss_pred HHHHHHHhhccCCCCEEEE
Confidence 8899999999988888775
No 293
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.69 E-value=10 Score=31.56 Aligned_cols=82 Identities=15% Similarity=0.065 Sum_probs=50.5
Q ss_pred eCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHH---HhhcccC
Q 044253 18 DVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRET---LMTLFKV 92 (139)
Q Consensus 18 D~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~---~~~lL~~ 92 (139)
-..+.+.+..++|..+.++.-...+-..|......+--++.+ .+ .||+|++|.... .-..+|++ +.+.++|
T Consensus 139 TFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK-ke---~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~P 214 (483)
T KOG0780|consen 139 TFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK-KE---NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKP 214 (483)
T ss_pred ccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH-hc---CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCC
Confidence 356788899999998887753344444554443322111111 35 899999997432 23345554 4468899
Q ss_pred CeEEEEeCCCC
Q 044253 93 GGIVIYDNTLW 103 (139)
Q Consensus 93 gG~ii~~~~~~ 103 (139)
+-+|.+-|...
T Consensus 215 d~vi~VmDasi 225 (483)
T KOG0780|consen 215 DEIIFVMDASI 225 (483)
T ss_pred CeEEEEEeccc
Confidence 98887755544
No 294
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=81.65 E-value=4.3 Score=33.38 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=50.8
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh-----hhcccCCCceeEEEEcCCC
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD-----EKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~-----~~~~~~~~~fD~If~D~~~ 76 (139)
|+|...+..+.+|+++|++++.++..+ .|. +.+...+..+.+.+.... ...-+ ..|+||+-.+.
T Consensus 17 ~~A~~La~~G~~V~~~D~~~~~v~~l~-----~g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~~---~aDvvii~vpt 85 (415)
T PRK11064 17 PTAAAFASRQKQVIGVDINQHAVDTIN-----RGE---IHIVEPDLDMVVKTAVEGGYLRATTTPE---PADAFLIAVPT 85 (415)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHHH-----CCC---CCcCCCCHHHHHHHHhhcCceeeecccc---cCCEEEEEcCC
Confidence 556666767889999999999877532 121 222333333333211000 00012 46888876543
Q ss_pred c----------chHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 77 D----------NYRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 77 ~----------~~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
+ ......+.+.+.+++|.+++..-+..
T Consensus 86 p~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 86 PFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred CCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 2 23344566778888888877654444
No 295
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=81.61 E-value=8.4 Score=29.57 Aligned_cols=73 Identities=15% Similarity=0.039 Sum_probs=45.0
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+.+|++++.+++..+.+++ .|...-+.....+..+.+.... .. .+|+|| |... ...++...+.
T Consensus 167 ~G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~-----~~---gvd~vl-d~~g---~~~~~~~~~~ 230 (329)
T cd08294 167 KGCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA-----PD---GIDCYF-DNVG---GEFSSTVLSH 230 (329)
T ss_pred cCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC-----CC---CcEEEE-ECCC---HHHHHHHHHh
Confidence 36678999988888777765 4553222222234444443331 24 699887 4432 1356778889
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
|+++|.++.
T Consensus 231 l~~~G~iv~ 239 (329)
T cd08294 231 MNDFGRVAV 239 (329)
T ss_pred hccCCEEEE
Confidence 999999975
No 296
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.98 E-value=6.7 Score=31.18 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=45.1
Q ss_pred hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
++ +|+++|.+++..+.+++ .|...-+.....+..+.+.... .. .+|+||--... ...+....+.
T Consensus 215 G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~~---g~d~vid~~G~---~~~~~~~~~~ 279 (371)
T cd08281 215 GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----GG---GVDYAFEMAGS---VPALETAYEI 279 (371)
T ss_pred CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----CC---CCCEEEECCCC---hHHHHHHHHH
Confidence 45 69999999999888864 4542112222223333333321 24 68988743322 2356677889
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 280 l~~~G~iv~~G 290 (371)
T cd08281 280 TRRGGTTVTAG 290 (371)
T ss_pred HhcCCEEEEEc
Confidence 99999988643
No 297
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=80.43 E-value=8.9 Score=30.76 Aligned_cols=76 Identities=13% Similarity=0.047 Sum_probs=60.6
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.++++|+++=-+++-++.+++- .|+..-+.+...|..+.|++.. .. ..|+.|=+... +.++.++.
T Consensus 173 lkG~rVVGiaGg~eK~~~l~~~---lGfD~~idyk~~d~~~~L~~a~-----P~---GIDvyfeNVGg----~v~DAv~~ 237 (340)
T COG2130 173 LKGCRVVGIAGGAEKCDFLTEE---LGFDAGIDYKAEDFAQALKEAC-----PK---GIDVYFENVGG----EVLDAVLP 237 (340)
T ss_pred hhCCeEEEecCCHHHHHHHHHh---cCCceeeecCcccHHHHHHHHC-----CC---CeEEEEEcCCc----hHHHHHHH
Confidence 5688999999999999998764 5776678888889888887654 24 79998877643 36788899
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
+|+..|+|++-
T Consensus 238 ~ln~~aRi~~C 248 (340)
T COG2130 238 LLNLFARIPVC 248 (340)
T ss_pred hhccccceeee
Confidence 99999998764
No 298
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=79.50 E-value=3 Score=31.63 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=40.0
Q ss_pred chhhhhh-hcceeEEeCCccHHHH-HHHHHHHcCCCCcEE-EEeCChHHHH-HhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253 4 NLESTFF-IYFIVAIDVSRESSET-GLPIIKKVEVDLKIN-LMESRALPAL-DQLLKDEKIHFFFENFDYAFVDAHKDNY 79 (139)
Q Consensus 4 ~~~~~~~-~~~v~~vD~s~~~~~~-Ar~n~~~~g~~~~i~-~~~~da~~~l-~~~~~~~~~~~~~~~fD~If~D~~~~~~ 79 (139)
..+.+.. ..+|++||++++++.. .+++. ++. +-..|+...- .....+ -. .||++|+.-
T Consensus 90 t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-------~v~~~~~~ni~~~~~~~~~~d---~~---~~DvsfiS~----- 151 (228)
T TIGR00478 90 TDCALQKGAKEVYGVDVGYNQLAEKLRQDE-------RVKVLERTNIRYVTPADIFPD---FA---TFDVSFISL----- 151 (228)
T ss_pred HHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-------CeeEeecCCcccCCHhHcCCC---ce---eeeEEEeeh-----
Confidence 3444555 3579999999987765 33321 221 2222332110 000000 12 577777643
Q ss_pred HHHHHHHhhcccCCeEEEE
Q 044253 80 RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~ 98 (139)
...+..+..+|++ |.+++
T Consensus 152 ~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 152 ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred HhHHHHHHHHhCc-CeEEE
Confidence 2257778888888 77664
No 299
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=79.29 E-value=20 Score=27.05 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=45.4
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL 89 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l 89 (139)
+|..||-++...+.....++..|+. .....+..+.+... .. .||+|++|...+. -..+...+...
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~---v~~~~~~~~a~~~~------~~---~~dlviLD~~lP~~dG~~~~~~iR~~ 68 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYE---VDVAADGEEALEAA------RE---QPDLVLLDLMLPDLDGLELCRRLRAK 68 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCE---EEEECCHHHHHHHH------hc---CCCEEEEECCCCCCCHHHHHHHHHhh
Confidence 5788999999999999999999973 34445566665544 23 3999999975443 23344555433
No 300
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=79.11 E-value=9.5 Score=29.62 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=44.4
Q ss_pred hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
+. +|++++.+++..+.+++. .|...-+.....+..+.+.++. .. .+|+|| |.... . .++.+.+.
T Consensus 179 G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~---gvd~vi-d~~g~--~-~~~~~~~~ 243 (345)
T cd08293 179 GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PE---GVDVYF-DNVGG--E-ISDTVISQ 243 (345)
T ss_pred CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CC---CceEEE-ECCCc--H-HHHHHHHH
Confidence 55 799999888877777653 4553222222234444444331 24 799887 44221 1 34677889
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
|+++|.++.
T Consensus 244 l~~~G~iv~ 252 (345)
T cd08293 244 MNENSHIIL 252 (345)
T ss_pred hccCCEEEE
Confidence 999999985
No 301
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=78.90 E-value=4.1 Score=32.14 Aligned_cols=57 Identities=14% Similarity=0.306 Sum_probs=37.5
Q ss_pred cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 39 KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 39 ~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
+|+|+-.+....|.. +.++ .. .||+||+....... +-..+.+.++++|.++++...+
T Consensus 201 kVhFLPld~~~~L~~-K~ky--~~---~Fd~ifvs~s~vh~--L~p~l~~~~a~~A~LvvEtaKf 257 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPH-KSKY--QN---FFDLIFVSCSMVHF--LKPELFQALAPDAVLVVETAKF 257 (289)
T ss_pred EEEEeCchHHHHHhh-HHhh--cC---CCCEEEEhhhhHhh--cchHHHHHhCCCCEEEEEcchh
Confidence 477777777666544 2222 34 89999998753221 1124667889999999988744
No 302
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=78.43 E-value=6.8 Score=29.91 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=37.6
Q ss_pred hhhhhhcceeEEeCCccH--HHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 6 ESTFFIYFIVAIDVSRES--SETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~--~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
+.+..+.+|..+|-||.. .++++.-.+...+.+++.+...+-...+........ .. .||+|++|.
T Consensus 25 ~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~-~~---~~d~VlvDl 91 (231)
T PF07015_consen 25 ELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAE-AS---GFDFVLVDL 91 (231)
T ss_pred HHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHH-hc---CCCEEEEeC
Confidence 334468899999888764 344332222233456788877654444444321110 24 699999995
No 303
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=78.35 E-value=5.5 Score=30.68 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=39.8
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHH
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYR 83 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~ 83 (139)
+...+..+.+|+++|.+++.++.+++. |.. .....+. +. . . ..|+||+-.+.......+
T Consensus 16 a~~L~~~g~~V~~~d~~~~~~~~a~~~----g~~---~~~~~~~-~~---~-------~---~aDlVilavp~~~~~~~~ 74 (279)
T PRK07417 16 GLDLRSLGHTVYGVSRRESTCERAIER----GLV---DEASTDL-SL---L-------K---DCDLVILALPIGLLLPPS 74 (279)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHC----CCc---ccccCCH-hH---h-------c---CCCEEEEcCCHHHHHHHH
Confidence 334444567899999999888776542 321 1111111 11 1 2 567777766544445556
Q ss_pred HHHhhcccCCeEE
Q 044253 84 ETLMTLFKVGGIV 96 (139)
Q Consensus 84 ~~~~~lL~~gG~i 96 (139)
+.+.+.++++.++
T Consensus 75 ~~l~~~l~~~~ii 87 (279)
T PRK07417 75 EQLIPALPPEAIV 87 (279)
T ss_pred HHHHHhCCCCcEE
Confidence 6666666555433
No 304
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.33 E-value=11 Score=29.75 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=46.0
Q ss_pred hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
+. +|++++.+++..+.+++ .|...-+.....+..+.+..... .. .+|+|+ |... -...+......
T Consensus 200 G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~----~~---g~d~vi-d~~g--~~~~~~~~~~~ 265 (358)
T TIGR03451 200 GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTG----GF---GADVVI-DAVG--RPETYKQAFYA 265 (358)
T ss_pred CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhC----CC---CCCEEE-ECCC--CHHHHHHHHHH
Confidence 44 59999999998888864 45421122223344444433321 24 689887 4422 12346667789
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
++++|.+++-..
T Consensus 266 ~~~~G~iv~~G~ 277 (358)
T TIGR03451 266 RDLAGTVVLVGV 277 (358)
T ss_pred hccCCEEEEECC
Confidence 999999986443
No 305
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=78.23 E-value=9.8 Score=29.77 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=45.1
Q ss_pred hcc-eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IYF-IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~~-v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
+.+ |++++.+++..+.+++ .|...-+.....+. +.+.+... .. .+|.+++|+.. ....+....+.
T Consensus 184 G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~-~~~~~~~~----~~---~~d~~v~d~~G--~~~~~~~~~~~ 249 (347)
T PRK10309 184 GAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSA-PQIQSVLR----EL---RFDQLILETAG--VPQTVELAIEI 249 (347)
T ss_pred CCCeEEEECCCHHHHHHHHH----cCCceEecCcccCH-HHHHHHhc----CC---CCCeEEEECCC--CHHHHHHHHHH
Confidence 454 7889999988877653 35421122222222 22222211 24 68867777643 23466778899
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
|++||.+++-..
T Consensus 250 l~~~G~iv~~G~ 261 (347)
T PRK10309 250 AGPRAQLALVGT 261 (347)
T ss_pred hhcCCEEEEEcc
Confidence 999999987543
No 306
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.09 E-value=11 Score=29.20 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=48.4
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHc--------CCC---------CcEEEEeCChHHHHHhhHHhhhcccCCCc
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKV--------EVD---------LKINLMESRALPALDQLLKDEKIHFFFEN 66 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~--------g~~---------~~i~~~~~da~~~l~~~~~~~~~~~~~~~ 66 (139)
|...+..+.+|+.+|++++.++.+++.++.. ++. .++++ ..|..+.+ . .
T Consensus 19 A~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~----------~---~ 84 (287)
T PRK08293 19 AFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV----------K---D 84 (287)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh----------c---C
Confidence 3444556779999999999999887764321 111 12332 23333221 3 5
Q ss_pred eeEEEEcCCCc--chHHHHHHHhhcccCCeEEEE
Q 044253 67 FDYAFVDAHKD--NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 67 fD~If~D~~~~--~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.|+|+.-.+.. ....+++.+.+.++++.+++.
T Consensus 85 aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 85 ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 78888876532 235567777777777766543
No 307
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=76.94 E-value=25 Score=25.38 Aligned_cols=78 Identities=8% Similarity=-0.034 Sum_probs=47.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRETL 86 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~~ 86 (139)
.+|..+|-++......+..++..+.. .+.....+..+.+..+. .. .+|+|++|..... -...++.+
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~~~~~~~-----~~---~~DlvllD~~l~~~~~~~g~~~~~~l 74 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWV-NVVGEFEDSTALINNLP-----KL---DAHVLITDLSMPGDKYGDGITLIKYI 74 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCC-EEEEEECCHHHHHHHHH-----hC---CCCEEEEeCcCCCCCCCCHHHHHHHH
Confidence 46889999999999888888765431 23334566776665542 34 7999999964332 33455555
Q ss_pred hhcccCCeEEEE
Q 044253 87 MTLFKVGGIVIY 98 (139)
Q Consensus 87 ~~lL~~gG~ii~ 98 (139)
......-.++++
T Consensus 75 ~~~~~~~~iIvl 86 (216)
T PRK10840 75 KRHFPSLSIIVL 86 (216)
T ss_pred HHHCCCCcEEEE
Confidence 443222244444
No 308
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=76.54 E-value=8.3 Score=31.16 Aligned_cols=72 Identities=10% Similarity=0.079 Sum_probs=40.6
Q ss_pred eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc-----CCCcchHHHHHHHhh
Q 044253 14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD-----AHKDNYRNYRETLMT 88 (139)
Q Consensus 14 v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D-----~~~~~~~~~~~~~~~ 88 (139)
|-+++.+...+-.+++++. .| |+.+-||.+.-. . +-|+||+= =.-.+-..+++.+.+
T Consensus 202 ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~----------P---~~daI~mkWiLhdwtDedcvkiLknC~~ 263 (342)
T KOG3178|consen 202 IKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT----------P---KGDAIWMKWILHDWTDEDCVKILKNCKK 263 (342)
T ss_pred CceeecCHHHHHhhhhhhc-CC----cceecccccccC----------C---CcCeEEEEeecccCChHHHHHHHHHHHH
Confidence 4555555555555555443 22 444555554331 1 34577652 111234668889999
Q ss_pred cccCCeEEEEeCCCC
Q 044253 89 LFKVGGIVIYDNTLW 103 (139)
Q Consensus 89 lL~~gG~ii~~~~~~ 103 (139)
-|+|||.|++-+...
T Consensus 264 sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 264 SLPPGGKIIVVENVT 278 (342)
T ss_pred hCCCCCEEEEEeccC
Confidence 999999987755433
No 309
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=76.47 E-value=17 Score=28.14 Aligned_cols=74 Identities=16% Similarity=0.076 Sum_probs=43.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeC-ChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~-da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+.+|++++.+++..+.+++ .|...-+..... +..+.+.... .. .+|+|| |+... ..++...+
T Consensus 162 ~G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~-----~~---gvdvv~-d~~G~---~~~~~~~~ 225 (325)
T TIGR02825 162 KGCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKAS-----PD---GYDCYF-DNVGG---EFSNTVIG 225 (325)
T ss_pred cCCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhC-----CC---CeEEEE-ECCCH---HHHHHHHH
Confidence 35678989988887777753 465211222221 2333333321 24 699887 44321 24577889
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
.|+++|.++.-
T Consensus 226 ~l~~~G~iv~~ 236 (325)
T TIGR02825 226 QMKKFGRIAIC 236 (325)
T ss_pred HhCcCcEEEEe
Confidence 99999999863
No 310
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=76.43 E-value=16 Score=29.41 Aligned_cols=77 Identities=6% Similarity=-0.014 Sum_probs=44.5
Q ss_pred CchhhhhhhcceeEEeCCccHHHH-HHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-hH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSET-GLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-YR 80 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~-Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-~~ 80 (139)
+|...+..+..|+.+|++++.++. ..+.+...| +++. .|..+.+ . ..|+||+-.+... ..
T Consensus 35 MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~G----i~~a-sd~~eaa----------~---~ADvVIlaVP~~~~v~ 96 (342)
T PRK12557 35 MAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAG----VKVV-SDDAEAA----------K---HGEIHILFTPFGKKTV 96 (342)
T ss_pred HHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCC----CEEe-CCHHHHH----------h---CCCEEEEECCCcHHHH
Confidence 344455567789999999885432 122233344 2332 2333322 2 5788887765444 56
Q ss_pred HHHHHHhhcccCCeEEE
Q 044253 81 NYRETLMTLFKVGGIVI 97 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii 97 (139)
.+++.+.+.+++|.+++
T Consensus 97 ~Vl~~L~~~L~~g~IVI 113 (342)
T PRK12557 97 EIAKNILPHLPENAVIC 113 (342)
T ss_pred HHHHHHHhhCCCCCEEE
Confidence 66777777776665444
No 311
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.84 E-value=11 Score=27.67 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=48.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCC--CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE-cCC--CcchHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVD--LKINLMESRALPALDQLLKDEKIHFFFENFDYAFV-DAH--KDNYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~--~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~-D~~--~~~~~~~~~~ 85 (139)
.+.|...|-+.+.++..++....+-.. .++.++.-+....-.+.. .. .||+|++ |+- ...-..+.++
T Consensus 54 ~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~e-----q~---tFDiIlaADClFfdE~h~sLvdt 125 (201)
T KOG3201|consen 54 DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQE-----QH---TFDIILAADCLFFDEHHESLVDT 125 (201)
T ss_pred CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHh-----hC---cccEEEeccchhHHHHHHHHHHH
Confidence 356888899999999888766544221 233333222221111110 24 8999986 442 1233567788
Q ss_pred HhhcccCCeEEEEe
Q 044253 86 LMTLFKVGGIVIYD 99 (139)
Q Consensus 86 ~~~lL~~gG~ii~~ 99 (139)
+..+|+|.|.-++-
T Consensus 126 Ik~lL~p~g~Al~f 139 (201)
T KOG3201|consen 126 IKSLLRPSGRALLF 139 (201)
T ss_pred HHHHhCcccceeEe
Confidence 88999999996653
No 312
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=75.80 E-value=2.2 Score=33.01 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=35.9
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
.|.++|+++.+++..+.|+... ++++|+.+....-. .. .+|+|+.+++..
T Consensus 24 ~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~-----~~---~~D~l~~gpPCq 73 (275)
T cd00315 24 IVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF-----IP---DIDLLTGGFPCQ 73 (275)
T ss_pred EEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc-----CC---CCCEEEeCCCCh
Confidence 5789999999999999987422 56677776533210 13 799999987543
No 313
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=75.60 E-value=5.3 Score=28.76 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCcch---HHHHHHHhhcccCCeEEEE
Q 044253 66 NFDYAFVDAHKDNY---RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 66 ~fD~If~D~~~~~~---~~~~~~~~~lL~~gG~ii~ 98 (139)
+||+|++||+.-.- ....+.+.-++++++.+++
T Consensus 86 ~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 86 KFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence 89999999986221 1223444456777777775
No 314
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=74.87 E-value=18 Score=28.08 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=44.6
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeC-ChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~-da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+.+|+++..+++..+.+++. .|...-+..... +..+.+.... .. .+|+|| |... ...+..+.+
T Consensus 175 ~G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~-----~~---gvd~v~-d~~g---~~~~~~~~~ 239 (338)
T cd08295 175 KGCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF-----PN---GIDIYF-DNVG---GKMLDAVLL 239 (338)
T ss_pred cCCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC-----CC---CcEEEE-ECCC---HHHHHHHHH
Confidence 356788888888887777653 354221221222 3333333321 24 799887 4422 135677889
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
.|+++|.++.
T Consensus 240 ~l~~~G~iv~ 249 (338)
T cd08295 240 NMNLHGRIAA 249 (338)
T ss_pred HhccCcEEEE
Confidence 9999999985
No 315
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=74.73 E-value=7.7 Score=34.70 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=45.9
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
..+-+|..+|-+.-...+|+.++++.|.. ++... |..+.+..+.. .. .||+||+|...+
T Consensus 664 l~g~~iLlvddn~vn~~Va~~~l~~~g~~--~~~~~-sg~e~l~~~~~----~~---~y~~ifmD~qMP 722 (786)
T KOG0519|consen 664 LTGPKILLVDDNPVNRKVATGMLKKLGAE--VTEVN-SGQEALDKLKP----PH---SYDVIFMDLQMP 722 (786)
T ss_pred ccCCceEEEecccchHHHHHHHHHHhCCe--eEeec-CcHHHHHhcCC----CC---cccEEEEEcCCc
Confidence 34668999999999999999999999973 44444 77787776631 24 899999997543
No 316
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=74.70 E-value=3.2 Score=28.65 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=33.3
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcC--CCCcEEEEeCChHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVE--VDLKINLMESRALPA 50 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g--~~~~i~~~~~da~~~ 50 (139)
...+|++||.+++..+.+.+..+..+ +..++++..++....
T Consensus 52 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 52 PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence 56799999999999999999998888 445677777765544
No 317
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=74.17 E-value=2.8 Score=29.96 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=40.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH-----HHHhhHHhhhcccCCCceeEEEEcCCCc--------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP-----ALDQLLKDEKIHFFFENFDYAFVDAHKD-------- 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~-----~l~~~~~~~~~~~~~~~fD~If~D~~~~-------- 77 (139)
..+|++||+.+. ... ..+..+++|..+ .+.....+ ... +||+|++|....
T Consensus 48 ~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~--~~~---~~dlv~~D~~~~~~g~~~~d 110 (181)
T PF01728_consen 48 AGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPE--SGE---KFDLVLSDMAPNVSGDRNID 110 (181)
T ss_dssp EEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGT--TTC---SESEEEE-------SSHHSS
T ss_pred cceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccc--ccc---CcceeccccccCCCCchhhH
Confidence 478999999988 122 345555665432 22221110 014 899999998210
Q ss_pred ch------HHHHHHHhhcccCCeEEEEeCC
Q 044253 78 NY------RNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 78 ~~------~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.+ ...+..+...|++||.+++.-.
T Consensus 111 ~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 111 EFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 11 1233445578999999887543
No 318
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=74.02 E-value=15 Score=28.53 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=43.9
Q ss_pred hhcc-eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYF-IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~-v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+++ |++++.+++..+.+++ .|...-+.....+ .+.+.+... .. .+|+||--... ...+....+
T Consensus 186 ~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~~----~~---~~d~vid~~g~---~~~~~~~~~ 250 (339)
T cd08239 186 LGAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELTS----GA---GADVAIECSGN---TAARRLALE 250 (339)
T ss_pred cCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHhC----CC---CCCEEEECCCC---HHHHHHHHH
Confidence 3556 9999999988877754 3542212222222 222222211 24 69988754332 234556778
Q ss_pred cccCCeEEEEeC
Q 044253 89 LFKVGGIVIYDN 100 (139)
Q Consensus 89 lL~~gG~ii~~~ 100 (139)
.|+++|.++.-.
T Consensus 251 ~l~~~G~~v~~g 262 (339)
T cd08239 251 AVRPWGRLVLVG 262 (339)
T ss_pred HhhcCCEEEEEc
Confidence 899999998643
No 319
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=73.26 E-value=23 Score=29.47 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=43.6
Q ss_pred hhcceeEEeCCccH---HHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hH
Q 044253 10 FIYFIVAIDVSRES---SETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YR 80 (139)
Q Consensus 10 ~~~~v~~vD~s~~~---~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~ 80 (139)
.+.+|..|+.|... .+..+.+....|+. ...... .+..+.......... .. .||+|++|.+... ..
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp-~~~~~~~~~P~~i~~~al~~~~-~~---~~DvVIIDTaGr~~~d~~l~ 201 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVP-VFALGKGQSPVEIARRALEYAK-EN---GFDVVIVDTAGRLQIDEELM 201 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCc-eEecCCCCCHHHHHHHHHHHHH-hc---CCCEEEEeCCCccccCHHHH
Confidence 35678778777543 34444555555542 111111 122222211110000 24 7999999985421 12
Q ss_pred HHHHHHhhcccCCeEEEEeCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.-+..+.+.++|.+++++-+.
T Consensus 202 ~eL~~i~~~~~p~e~lLVvda 222 (428)
T TIGR00959 202 EELAAIKEILNPDEILLVVDA 222 (428)
T ss_pred HHHHHHHHhhCCceEEEEEec
Confidence 234455567788888766443
No 320
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.00 E-value=9.9 Score=29.33 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=47.7
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHc---CC-----C--------CcEEEEeCChHHHHHhhHHhhhcccCCCce
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKV---EV-----D--------LKINLMESRALPALDQLLKDEKIHFFFENF 67 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~---g~-----~--------~~i~~~~~da~~~l~~~~~~~~~~~~~~~f 67 (139)
|...+..+.+|+.+|++++.++.+++.+... +. . .++++ ..+..+.+ . ..
T Consensus 17 A~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~----------~---~a 82 (288)
T PRK09260 17 AYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAAV----------A---DA 82 (288)
T ss_pred HHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHhh----------c---CC
Confidence 3445556788999999999999987654321 11 0 11221 12222221 3 57
Q ss_pred eEEEEcCCCcc--hHHHHHHHhhcccCCeEEEEe
Q 044253 68 DYAFVDAHKDN--YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 68 D~If~D~~~~~--~~~~~~~~~~lL~~gG~ii~~ 99 (139)
|+|+.-.+... -..++..+.+.++++.+++.+
T Consensus 83 D~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 83 DLVIEAVPEKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred CEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 89987654321 234566777788888776543
No 321
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=72.90 E-value=16 Score=30.27 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=30.9
Q ss_pred hcceeEEeCCccH---HHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 11 IYFIVAIDVSRES---SETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 11 ~~~v~~vD~s~~~---~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
+.+|..++.|+.. .+..+.+.+..|+. +.. ..+..++...+.. -. .+|+|++|.+
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~-~~~~~~l~~~l~~----~~---~~DlVlIDt~ 308 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIP--VEV-VYDPKELAKALEQ----LR---DCDVILIDTA 308 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCc--eEc-cCCHHhHHHHHHH----hC---CCCEEEEeCC
Confidence 4679999999864 34455555556653 222 1222333222211 24 7999999964
No 322
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=72.50 E-value=23 Score=27.99 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=45.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeC-ChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~-da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+.+|++++.+++..+.+++. .|...-+..... +..+.+.... .. .+|+|| |... ...+..+.+
T Consensus 182 ~G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~-----~~---gvD~v~-d~vG---~~~~~~~~~ 246 (348)
T PLN03154 182 HGCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF-----PE---GIDIYF-DNVG---GDMLDAALL 246 (348)
T ss_pred cCCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC-----CC---CcEEEE-ECCC---HHHHHHHHH
Confidence 366799999988887776533 455322222222 4444443331 24 699887 4422 135677889
Q ss_pred cccCCeEEEEeC
Q 044253 89 LFKVGGIVIYDN 100 (139)
Q Consensus 89 lL~~gG~ii~~~ 100 (139)
.|+++|.++.-.
T Consensus 247 ~l~~~G~iv~~G 258 (348)
T PLN03154 247 NMKIHGRIAVCG 258 (348)
T ss_pred HhccCCEEEEEC
Confidence 999999998643
No 323
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=72.42 E-value=20 Score=27.41 Aligned_cols=74 Identities=19% Similarity=0.132 Sum_probs=43.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|++++.+++..+.+++ .|....+.....+....+.... .. .+|+|+--.. ....++.+.+.|
T Consensus 189 G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~-----~~---~~D~vid~~g---~~~~~~~~~~~l 253 (338)
T cd08254 189 GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGL-----GG---GFDVIFDFVG---TQPTFEDAQKAV 253 (338)
T ss_pred CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhc-----CC---CceEEEECCC---CHHHHHHHHHHh
Confidence 5578888888887777654 3542212222223333331111 34 7997764322 134567788999
Q ss_pred cCCeEEEEe
Q 044253 91 KVGGIVIYD 99 (139)
Q Consensus 91 ~~gG~ii~~ 99 (139)
+++|.++.-
T Consensus 254 ~~~G~~v~~ 262 (338)
T cd08254 254 KPGGRIVVV 262 (338)
T ss_pred hcCCEEEEE
Confidence 999999864
No 324
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=72.37 E-value=10 Score=29.77 Aligned_cols=78 Identities=12% Similarity=-0.004 Sum_probs=47.7
Q ss_pred hhhhhcceeEEeCCccHHHHHHHH---HHHc-C--CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPI---IKKV-E--VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR 80 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n---~~~~-g--~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~ 80 (139)
.+..+.+|+.++++++.++..+++ .... + +.+.+++. .|..+.+ .. .+|+||+-.......
T Consensus 19 L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~---------~~---~~Dliiiavks~~~~ 85 (326)
T PRK14620 19 LSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL---------SD---NATCIILAVPTQQLR 85 (326)
T ss_pred HHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH---------hC---CCCEEEEEeCHHHHH
Confidence 344567899999998877766653 2211 1 11223332 3333322 14 689999987666677
Q ss_pred HHHHHHhh-cccCCeEEE
Q 044253 81 NYRETLMT-LFKVGGIVI 97 (139)
Q Consensus 81 ~~~~~~~~-lL~~gG~ii 97 (139)
..++.+.+ .+.++..++
T Consensus 86 ~~l~~l~~~~l~~~~~vv 103 (326)
T PRK14620 86 TICQQLQDCHLKKNTPIL 103 (326)
T ss_pred HHHHHHHHhcCCCCCEEE
Confidence 78888887 888776554
No 325
>PRK10867 signal recognition particle protein; Provisional
Probab=72.29 E-value=26 Score=29.19 Aligned_cols=83 Identities=8% Similarity=0.090 Sum_probs=44.0
Q ss_pred hcceeEEeCCccHHH---HHHHHHHHcCCCCcEEEEe----CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----
Q 044253 11 IYFIVAIDVSRESSE---TGLPIIKKVEVDLKINLME----SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----- 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~---~Ar~n~~~~g~~~~i~~~~----~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----- 78 (139)
+.+|..|+.|..... ..+.+.+..|+ .++. .|..+.......... .. .||+|++|.+...
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv----~v~~~~~~~dp~~i~~~a~~~a~-~~---~~DvVIIDTaGrl~~d~~ 200 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGV----PVFPSGDGQDPVDIAKAALEEAK-EN---GYDVVIVDTAGRLHIDEE 200 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCC----eEEecCCCCCHHHHHHHHHHHHH-hc---CCCEEEEeCCCCcccCHH
Confidence 567877777755443 33444455554 3332 344443322111000 24 6999999985422
Q ss_pred hHHHHHHHhhcccCCeEEEEeCC
Q 044253 79 YRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
...-+..+.+.++|..++++-+.
T Consensus 201 lm~eL~~i~~~v~p~evllVlda 223 (433)
T PRK10867 201 LMDELKAIKAAVNPDEILLVVDA 223 (433)
T ss_pred HHHHHHHHHHhhCCCeEEEEEec
Confidence 12234455567788888766544
No 326
>PHA01634 hypothetical protein
Probab=72.11 E-value=6.2 Score=27.78 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=36.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
.+|+++|.++...+..++|++.+.+.+...-.. ++..+ -+ +||+..+|.
T Consensus 52 K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~--------eW~~~---Y~---~~Di~~iDC 100 (156)
T PHA01634 52 SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG--------EWNGE---YE---DVDIFVMDC 100 (156)
T ss_pred cEEEEeccCHHHHHHHHHHhhhheeeeceeecc--------ccccc---CC---CcceEEEEc
Confidence 479999999999999999999887755543332 12212 25 899999997
No 327
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=72.07 E-value=4.9 Score=31.50 Aligned_cols=82 Identities=7% Similarity=-0.082 Sum_probs=45.2
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCC----CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVD----LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN 78 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~----~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~ 78 (139)
||...+..+..|+.++.+.+.++..+++ .|+. ............ ... .. .||+||+-.-..+
T Consensus 17 ~a~~L~~~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~--~~~------~~---~~D~viv~vK~~~ 82 (305)
T PRK05708 17 WACRLARAGLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET--ADA------AE---PIHRLLLACKAYD 82 (305)
T ss_pred HHHHHHhCCCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC--ccc------cc---ccCEEEEECCHHh
Confidence 3444555677899999987766655542 1220 000111000000 000 24 7999998763333
Q ss_pred hHHHHHHHhhcccCCeEEEE
Q 044253 79 YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~ 98 (139)
....++.+.+++.+++.++.
T Consensus 83 ~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 83 AEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred HHHHHHHHHhhCCCCCEEEE
Confidence 45667777788888887653
No 328
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=71.88 E-value=5.9 Score=32.16 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=44.1
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
...+.+|++||..+-. ..+.. .++++.+.+|...+.+. .. ++|++++|... .+....+.+.
T Consensus 230 ~~rG~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~-------~~---~vDwvVcDmve-~P~rva~lm~ 290 (357)
T PRK11760 230 VRRGMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP-------RK---NVDWLVCDMVE-KPARVAELMA 290 (357)
T ss_pred HHcCCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC-------CC---CCCEEEEeccc-CHHHHHHHHH
Confidence 3456789999955422 22222 35799999999887542 24 79999999853 3445556566
Q ss_pred hcccCC
Q 044253 88 TLFKVG 93 (139)
Q Consensus 88 ~lL~~g 93 (139)
+.|..|
T Consensus 291 ~Wl~~g 296 (357)
T PRK11760 291 QWLVNG 296 (357)
T ss_pred HHHhcC
Confidence 666554
No 329
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.81 E-value=18 Score=28.78 Aligned_cols=67 Identities=18% Similarity=0.108 Sum_probs=48.2
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhh-cccCCCceeEEEEcCC
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEK-IHFFFENFDYAFVDAH 75 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~-~~~~~~~fD~If~D~~ 75 (139)
.|++.|++++++...|++.+......+.+++.| ++....+|..+. +.++.++.+ +.+ ..|+++-+++
T Consensus 54 ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~G---~V~ILVNNAG 123 (300)
T KOG1201|consen 54 IALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEVG---DVDILVNNAG 123 (300)
T ss_pred HHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhcC---CceEEEeccc
Confidence 367889999999999999999999999998876 577777776532 122222211 134 7999998763
No 330
>PHA02518 ParA-like protein; Provisional
Probab=71.40 E-value=5.4 Score=28.76 Aligned_cols=19 Identities=5% Similarity=-0.183 Sum_probs=14.6
Q ss_pred hhhhhhhcceeEEeCCccH
Q 044253 5 LESTFFIYFIVAIDVSRES 23 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~ 23 (139)
.+.+..+.+|..||.|++.
T Consensus 23 ~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 23 SWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred HHHHhCCCeEEEEeCCCCC
Confidence 3455567899999999875
No 331
>PLN02827 Alcohol dehydrogenase-like
Probab=71.07 E-value=19 Score=28.81 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=42.4
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
.|++++.+++..+.|++ .|...-+.... .+..+.+.++. .. .+|+||--... ...+...++.+
T Consensus 220 ~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~-----~~---g~d~vid~~G~---~~~~~~~l~~l 284 (378)
T PLN02827 220 QIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT-----GG---GADYSFECVGD---TGIATTALQSC 284 (378)
T ss_pred eEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-----CC---CCCEEEECCCC---hHHHHHHHHhh
Confidence 58889999988877754 46521122111 12333333331 23 68988743332 23466778889
Q ss_pred cCC-eEEEEeC
Q 044253 91 KVG-GIVIYDN 100 (139)
Q Consensus 91 ~~g-G~ii~~~ 100 (139)
++| |.+++-.
T Consensus 285 ~~g~G~iv~~G 295 (378)
T PLN02827 285 SDGWGLTVTLG 295 (378)
T ss_pred ccCCCEEEEEC
Confidence 998 9997643
No 332
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=70.93 E-value=9.6 Score=29.56 Aligned_cols=80 Identities=10% Similarity=-0.020 Sum_probs=46.4
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHc----C--CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKV----E--VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~----g--~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
+...+..+.+|+.++++++.++..++.-... + ....++. ..+..+.+ . ..|+||+-....
T Consensus 17 a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~---~~D~vi~~v~~~ 82 (325)
T PRK00094 17 AIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEAL----------A---DADLILVAVPSQ 82 (325)
T ss_pred HHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHHH----------h---CCCEEEEeCCHH
Confidence 3444555678999999998877665531000 0 0011222 22322221 3 679999877554
Q ss_pred chHHHHHHHhhcccCCeEEE
Q 044253 78 NYRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii 97 (139)
.....++.+.+.++++.+++
T Consensus 83 ~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 83 ALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred HHHHHHHHHHhhcCCCCEEE
Confidence 55666777777788877665
No 333
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=70.83 E-value=20 Score=28.18 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=43.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCC---hHHHHHhhHHhhhcccCCCceeE---EEEcCCCcchHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESR---ALPALDQLLKDEKIHFFFENFDY---AFVDAHKDNYRNYR 83 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~d---a~~~l~~~~~~~~~~~~~~~fD~---If~D~~~~~~~~~~ 83 (139)
.+.+|++++.+++..+.+++ .|...-+.....+ ..+.+.++.. .. .+|. +++|+.. ....+
T Consensus 189 ~G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~----~~---g~d~~~d~v~d~~g--~~~~~ 255 (349)
T TIGR03201 189 MGAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAK----AR---GLRSTGWKIFECSG--SKPGQ 255 (349)
T ss_pred cCCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcc----cC---CCCCCcCEEEECCC--ChHHH
Confidence 35689999999998888764 3542212222222 2222222211 13 4651 4455532 23456
Q ss_pred HHHhhcccCCeEEEEeCC
Q 044253 84 ETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~~ 101 (139)
+.+.+.|++||.++.-..
T Consensus 256 ~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 256 ESALSLLSHGGTLVVVGY 273 (349)
T ss_pred HHHHHHHhcCCeEEEECc
Confidence 667889999999986544
No 334
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=70.43 E-value=2.4 Score=32.80 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=51.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~ 88 (139)
.+++.+|.|..|++.++.- +..++ .+....+|-. +|+ +. +. ++|+|+..-. ..+.+.++.++..
T Consensus 96 ekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE-~Ld-f~-----en---s~DLiisSlslHW~NdLPg~m~~ck~ 162 (325)
T KOG2940|consen 96 EKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEE-FLD-FK-----EN---SVDLIISSLSLHWTNDLPGSMIQCKL 162 (325)
T ss_pred hheeeeecchHHHHHhhcc-CCCce--EEEEEecchh-ccc-cc-----cc---chhhhhhhhhhhhhccCchHHHHHHH
Confidence 4689999999999988753 22333 2455566643 344 32 46 8999997643 2345667888889
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
.|||+|.++.
T Consensus 163 ~lKPDg~Fia 172 (325)
T KOG2940|consen 163 ALKPDGLFIA 172 (325)
T ss_pred hcCCCccchh
Confidence 9999999984
No 335
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=70.41 E-value=24 Score=23.22 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccCCeE
Q 044253 22 ESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGI 95 (139)
Q Consensus 22 ~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ 95 (139)
-+.+..++.++..|+. +++......+.-.. -+ .+|+|++-|.. .-.++.+.+.+.+.|+
T Consensus 15 ~la~km~~~a~~~gi~--~~i~a~~~~e~~~~-------~~---~~Dvill~PQv---~~~~~~i~~~~~~~~i 73 (99)
T cd05565 15 LLANALNKGAKERGVP--LEAAAGAYGSHYDM-------IP---DYDLVILAPQM---ASYYDELKKDTDRLGI 73 (99)
T ss_pred HHHHHHHHHHHHCCCc--EEEEEeeHHHHHHh-------cc---CCCEEEEcChH---HHHHHHHHHHhhhcCC
Confidence 3556778888888984 88888877776333 24 79999998743 3345556666666555
No 336
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=70.24 E-value=20 Score=28.14 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=42.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++|.+++.++.|++ .+. ...+ + +. .. .. .+|+||=-.+.......++...++|
T Consensus 189 ~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~-~~-------~~---g~d~viD~~G~~~~~~~~~~~~~~l 246 (341)
T cd08237 189 ESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DI-PE-------DL---AVDHAFECVGGRGSQSAINQIIDYI 246 (341)
T ss_pred CCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hh-hh-------cc---CCcEEEECCCCCccHHHHHHHHHhC
Confidence 4579999999998888864 232 1111 1 11 11 23 5898874333221344677888999
Q ss_pred cCCeEEEEeC
Q 044253 91 KVGGIVIYDN 100 (139)
Q Consensus 91 ~~gG~ii~~~ 100 (139)
+++|.+++-.
T Consensus 247 ~~~G~iv~~G 256 (341)
T cd08237 247 RPQGTIGLMG 256 (341)
T ss_pred cCCcEEEEEe
Confidence 9999998644
No 337
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=70.13 E-value=13 Score=30.42 Aligned_cols=75 Identities=9% Similarity=-0.017 Sum_probs=46.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCc-EEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLK-INLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~-i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
...++.+-=|--...-.++|++.+|+... ++++ +..+. + .+ .+|+|++--++. .....+..+.
T Consensus 64 ~~~~~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~---~------~~---~~d~vl~~~PK~~~~l~~~l~~l~ 129 (378)
T PRK15001 64 EHKPYSIGDSYISELATRENLRLNGIDESSVKFL--DSTAD---Y------PQ---QPGVVLIKVPKTLALLEQQLRALR 129 (378)
T ss_pred hCCCCeeehHHHHHHHHHHHHHHcCCCcccceee--ccccc---c------cC---CCCEEEEEeCCCHHHHHHHHHHHH
Confidence 34555552222233344789999998533 5555 23222 2 24 799999987653 2334566777
Q ss_pred hcccCCeEEEEe
Q 044253 88 TLFKVGGIVIYD 99 (139)
Q Consensus 88 ~lL~~gG~ii~~ 99 (139)
..|.+|+.+++-
T Consensus 130 ~~l~~~~~ii~g 141 (378)
T PRK15001 130 KVVTSDTRIIAG 141 (378)
T ss_pred hhCCCCCEEEEE
Confidence 899999998763
No 338
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=69.92 E-value=7.4 Score=32.72 Aligned_cols=28 Identities=14% Similarity=0.016 Sum_probs=21.0
Q ss_pred CCchhhhhh--hcceeEEeCCccHHHHHHH
Q 044253 2 PFNLESTFF--IYFIVAIDVSRESSETGLP 29 (139)
Q Consensus 2 ~~~~~~~~~--~~~v~~vD~s~~~~~~Ar~ 29 (139)
|+|+..|.. +.+|+++|++++.++..++
T Consensus 15 ~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 15 PTMAVIALKCPDIEVVVVDISVPRIDAWNS 44 (473)
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence 455556655 4679999999999888654
No 339
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=69.73 E-value=5.5 Score=31.19 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=24.9
Q ss_pred ceeEEEEcCCCcchHHHHHHHhhcccCCeEEEE
Q 044253 66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.||+||+-.........++.+.+++++++.++.
T Consensus 72 ~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 72 PCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 799999986544556677777788888887754
No 340
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=69.19 E-value=36 Score=23.76 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=37.8
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
++..+|-++......+..++..|+ .+.....+..+.+..+. .. .+|+|++|...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~-----~~---~~dlvi~d~~~ 55 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDI--EILAELTEGGSAVQRVE-----TL---KPDIVIIDVDI 55 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCC--EEEEEeCCHHHHHHHHH-----cc---CCCEEEEeCCC
Confidence 467888888888888888876554 23334567777765543 35 79999999743
No 341
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.01 E-value=34 Score=26.83 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=33.8
Q ss_pred Cchhhhhhh--cceeEEeCCccHHH-HHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 3 FNLESTFFI--YFIVAIDVSRESSE-TGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 3 ~~~~~~~~~--~~v~~vD~s~~~~~-~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
.++..+..+ .+++.+|++++..+ .+........+.....+..+|..+ + . ..|+|++-++
T Consensus 15 ~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~----l-------~---~aDiViita~ 76 (308)
T cd05292 15 TAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD----C-------K---GADVVVITAG 76 (308)
T ss_pred HHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH----h-------C---CCCEEEEccC
Confidence 344455555 57999999988765 344333322232334555555432 2 3 5899998654
No 342
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=68.97 E-value=26 Score=27.00 Aligned_cols=75 Identities=12% Similarity=0.103 Sum_probs=43.5
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+.+|++++.+++..+.+++ .|...-+.....+..+.+.+... .. .+|+||--.... ........
T Consensus 167 ~G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~~----~~---~~d~vid~~g~~----~~~~~~~~ 231 (324)
T cd08291 167 DGIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELIA----KL---NATIFFDAVGGG----LTGQILLA 231 (324)
T ss_pred cCCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHhC----CC---CCcEEEECCCcH----HHHHHHHh
Confidence 36689999999988877765 46532222222344333333321 24 689887433221 23445678
Q ss_pred ccCCeEEEEe
Q 044253 90 FKVGGIVIYD 99 (139)
Q Consensus 90 L~~gG~ii~~ 99 (139)
++++|.++.-
T Consensus 232 l~~~G~~v~~ 241 (324)
T cd08291 232 MPYGSTLYVY 241 (324)
T ss_pred hCCCCEEEEE
Confidence 8999998763
No 343
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.76 E-value=28 Score=27.16 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=44.1
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV 92 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~ 92 (139)
.+++++.+++..+.+++ .|...-+.....+..+.+..+.. .. .+|+|+--... ...+..+.+.|++
T Consensus 193 ~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~----~~---~~d~vld~~g~---~~~~~~~~~~l~~ 258 (351)
T cd08285 193 RIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTG----GK---GVDAVIIAGGG---QDTFEQALKVLKP 258 (351)
T ss_pred eEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhC----CC---CCcEEEECCCC---HHHHHHHHHHhhc
Confidence 58899999888777764 45432222222333333333221 24 69988754332 2356778888999
Q ss_pred CeEEEEeC
Q 044253 93 GGIVIYDN 100 (139)
Q Consensus 93 gG~ii~~~ 100 (139)
+|.++.-.
T Consensus 259 ~G~~v~~g 266 (351)
T cd08285 259 GGTISNVN 266 (351)
T ss_pred CCEEEEec
Confidence 99988543
No 344
>PRK13435 response regulator; Provisional
Probab=68.71 E-value=24 Score=23.49 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=39.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
..+|..+|-++......+..++..|+ ++.....++.+.+.... .. .+|+|++|..
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~-----~~---~~dliivd~~ 59 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGH--EVVGIAMSSEQAIALGR-----RR---QPDVALVDVH 59 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCC--eEEEeeCCHHHHHHHhh-----hc---CCCEEEEeee
Confidence 45788999999999988888887665 23334566666655432 34 7999999964
No 345
>PRK10037 cell division protein; Provisional
Probab=68.69 E-value=13 Score=27.94 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=16.1
Q ss_pred chhhhhhhcceeEEeCCccH
Q 044253 4 NLESTFFIYFIVAIDVSRES 23 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~ 23 (139)
|...+..+.+|..||.|++.
T Consensus 23 A~~La~~G~rVLlID~D~q~ 42 (250)
T PRK10037 23 AWSLQMLGENVLVIDACPDN 42 (250)
T ss_pred HHHHHhcCCcEEEEeCChhh
Confidence 45566778899999999974
No 346
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=68.34 E-value=4.3 Score=31.20 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=50.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
..+|++||.....+.+--++ .+|+..+. .++...-+.-. .+ ..|+|++|...-.....+..+..+
T Consensus 102 Ak~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~-----~~---~~d~~v~DvSFISL~~iLp~l~~l 167 (245)
T COG1189 102 AKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDF-----TE---KPDLIVIDVSFISLKLILPALLLL 167 (245)
T ss_pred CcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHHHc-----cc---CCCeEEEEeehhhHHHHHHHHHHh
Confidence 56899999998877664322 35666654 34443322111 24 789999998655556678888899
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
++++|-++.
T Consensus 168 ~~~~~~~v~ 176 (245)
T COG1189 168 LKDGGDLVL 176 (245)
T ss_pred cCCCceEEE
Confidence 999998875
No 347
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=68.26 E-value=47 Score=28.36 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=47.3
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEE--Ee-------------CChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINL--ME-------------SRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~--~~-------------~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
.+++|+++|++++.++.+++ .|.. .+.+ .. .+..+.......+. -. .+|+||.-.
T Consensus 187 lGA~V~a~D~~~~rle~aes----lGA~-~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~--~~---gaDVVIeta 256 (509)
T PRK09424 187 LGAIVRAFDTRPEVAEQVES----MGAE-FLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ--AK---EVDIIITTA 256 (509)
T ss_pred CCCEEEEEeCCHHHHHHHHH----cCCe-EEEeccccccccccchhhhcchhHHHHHHHHHHhc--cC---CCCEEEECC
Confidence 46789999999999999886 2431 1111 01 11111111110000 13 699999876
Q ss_pred CCcc---hHHHHHHHhhcccCCeEEEEeCC
Q 044253 75 HKDN---YRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 75 ~~~~---~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.... ..-+.+...+.+++||+++.-.+
T Consensus 257 g~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 257 LIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 4322 22235889999999999875444
No 348
>PLN02740 Alcohol dehydrogenase-like
Probab=68.21 E-value=34 Score=27.34 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=43.6
Q ss_pred hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
+. +|+++|.+++.++.+++ .|...-+.... .+..+.+.++. .. .+|+||--... ...+....
T Consensus 222 G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~---g~dvvid~~G~---~~~~~~a~ 286 (381)
T PLN02740 222 GASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT-----GG---GVDYSFECAGN---VEVLREAF 286 (381)
T ss_pred CCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh-----CC---CCCEEEECCCC---hHHHHHHH
Confidence 45 69999999998888865 46532222221 12333333332 23 59987654332 23566677
Q ss_pred hcccCC-eEEEEeC
Q 044253 88 TLFKVG-GIVIYDN 100 (139)
Q Consensus 88 ~lL~~g-G~ii~~~ 100 (139)
..+++| |.+++-.
T Consensus 287 ~~~~~g~G~~v~~G 300 (381)
T PLN02740 287 LSTHDGWGLTVLLG 300 (381)
T ss_pred HhhhcCCCEEEEEc
Confidence 788886 8876533
No 349
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.11 E-value=19 Score=25.30 Aligned_cols=27 Identities=19% Similarity=0.023 Sum_probs=19.7
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLP 29 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~ 29 (139)
.+......+..|+..|++++.++...+
T Consensus 16 ~a~~L~~~g~~v~~~d~~~~~~~~~~~ 42 (163)
T PF03446_consen 16 MARNLAKAGYEVTVYDRSPEKAEALAE 42 (163)
T ss_dssp HHHHHHHTTTEEEEEESSHHHHHHHHH
T ss_pred HHHHHHhcCCeEEeeccchhhhhhhHH
Confidence 344556668899999999977776653
No 350
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=68.04 E-value=30 Score=22.37 Aligned_cols=71 Identities=15% Similarity=0.019 Sum_probs=44.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+|+.+|.+++.++.+++. | +.++.||+.+. +.+.. -+ +.|.|++..+.....-..-...+.
T Consensus 22 ~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~-----i~---~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 22 IDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAG-----IE---KADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp SEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTT-----GG---CESEEEEESSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcC-----cc---ccCEEEEccCCHHHHHHHHHHHHH
Confidence 4799999999998887642 3 57899998764 33321 24 799999887543222222233355
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
+.+...+++
T Consensus 86 ~~~~~~ii~ 94 (116)
T PF02254_consen 86 LNPDIRIIA 94 (116)
T ss_dssp HTTTSEEEE
T ss_pred HCCCCeEEE
Confidence 667767664
No 351
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=67.81 E-value=36 Score=25.78 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=44.1
Q ss_pred hcc-eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IYF-IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~~-v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
+.+ |+++|.+++..+.+++ .|...-+. ..+..+.+..+.. .. .+|+||--... ...++.+.+.
T Consensus 144 G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~--~~~~~~~~~~~~~----~~---g~d~vid~~G~---~~~~~~~~~~ 207 (280)
T TIGR03366 144 GAARVVAADPSPDRRELALS----FGATALAE--PEVLAERQGGLQN----GR---GVDVALEFSGA---TAAVRACLES 207 (280)
T ss_pred CCCEEEEECCCHHHHHHHHH----cCCcEecC--chhhHHHHHHHhC----CC---CCCEEEECCCC---hHHHHHHHHH
Confidence 444 8899999988887765 45421111 1111122222211 24 69988754322 3356777899
Q ss_pred ccCCeEEEEeCCC
Q 044253 90 FKVGGIVIYDNTL 102 (139)
Q Consensus 90 L~~gG~ii~~~~~ 102 (139)
|+++|.++.-...
T Consensus 208 l~~~G~iv~~G~~ 220 (280)
T TIGR03366 208 LDVGGTAVLAGSV 220 (280)
T ss_pred hcCCCEEEEeccC
Confidence 9999999865543
No 352
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=67.73 E-value=4.8 Score=31.69 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.0
Q ss_pred chHHHHHHHhhcccCCeEEEEeCC
Q 044253 78 NYRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
++.+++..+.++|++||.+.+-.+
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEeh
Confidence 467889999999999999987444
No 353
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=67.54 E-value=21 Score=27.57 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=46.8
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHc--CCC-----------------CcEEEEeCChHHHHHhhHHhhhcccCC
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKV--EVD-----------------LKINLMESRALPALDQLLKDEKIHFFF 64 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~--g~~-----------------~~i~~~~~da~~~l~~~~~~~~~~~~~ 64 (139)
|...+..+.+|+.+|++++.++.+++.+... ++. .++... .|. +. + .
T Consensus 19 A~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~---~-------~-- 84 (291)
T PRK06035 19 AQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY-ES---L-------S-- 84 (291)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-HH---h-------C--
Confidence 3445556779999999999999877655432 110 011111 111 11 1 3
Q ss_pred CceeEEEEcCCCcc--hHHHHHHHhhcccCCeEEE
Q 044253 65 ENFDYAFVDAHKDN--YRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 65 ~~fD~If~D~~~~~--~~~~~~~~~~lL~~gG~ii 97 (139)
..|+|+.-.+... ...++..+.+.++++.+++
T Consensus 85 -~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 85 -DADFIVEAVPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred -CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 5788888654322 3556777777787777665
No 354
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=67.37 E-value=39 Score=26.00 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=44.6
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+.+|++++.+++..+.+++ .|...-+.... .+....+... .. .+|.++.+... ...++.+.+
T Consensus 186 ~g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~------~~---~~d~vi~~~~~---~~~~~~~~~ 249 (338)
T PRK09422 186 FNAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK------TG---GAHAAVVTAVA---KAAFNQAVD 249 (338)
T ss_pred CCCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh------cC---CCcEEEEeCCC---HHHHHHHHH
Confidence 37789999999998888853 35421111111 1222223322 23 58877777542 345777888
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
.|+++|.++.
T Consensus 250 ~l~~~G~~v~ 259 (338)
T PRK09422 250 AVRAGGRVVA 259 (338)
T ss_pred hccCCCEEEE
Confidence 9999999885
No 355
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=67.06 E-value=12 Score=28.96 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=20.3
Q ss_pred cceeEEeCCccHHHHHHHHHHHcC
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVE 35 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g 35 (139)
.++++||.|+.+.+.++..++...
T Consensus 59 ~~~~~vd~s~~~~~l~~~l~~~~~ 82 (274)
T PF09243_consen 59 KEYTCVDRSPEMLELAKRLLRAGP 82 (274)
T ss_pred eeeeeecCCHHHHHHHHHHHhccc
Confidence 468999999999999999776543
No 356
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=66.96 E-value=20 Score=27.93 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=34.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|+.+|++++..+.+++ .|..+ . ...+..+. + . ..|+|++-.+......+++.+.+.++
T Consensus 32 ~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~---~-------~---~aDvViiavp~~~~~~v~~~l~~~l~ 91 (307)
T PRK07502 32 GEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA---V-------K---GADLVILCVPVGASGAVAAEIAPHLK 91 (307)
T ss_pred cEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH---h-------c---CCCEEEECCCHHHHHHHHHHHHhhCC
Confidence 379999999988776653 34311 1 11122111 1 2 46777776554334445555555566
Q ss_pred CCeEE
Q 044253 92 VGGIV 96 (139)
Q Consensus 92 ~gG~i 96 (139)
+++++
T Consensus 92 ~~~iv 96 (307)
T PRK07502 92 PGAIV 96 (307)
T ss_pred CCCEE
Confidence 66544
No 357
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=66.58 E-value=25 Score=27.34 Aligned_cols=74 Identities=12% Similarity=-0.075 Sum_probs=40.0
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHH
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYR 83 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~ 83 (139)
+...+..+.+|+..|++++.++.+++ .+... ..+..+....+ . ..|+|++-.+.......+
T Consensus 16 a~~L~~~g~~V~~~dr~~~~~~~l~~----~g~~~-----~~s~~~~~~~~-------~---~~dvIi~~vp~~~~~~v~ 76 (298)
T TIGR00872 16 VRRLAKRGHDCVGYDHDQDAVKAMKE----DRTTG-----VANLRELSQRL-------S---APRVVWVMVPHGIVDAVL 76 (298)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHH----cCCcc-----cCCHHHHHhhc-------C---CCCEEEEEcCchHHHHHH
Confidence 34455566789999999988776654 22210 12332322211 2 457776654433445556
Q ss_pred HHHhhcccCCeEE
Q 044253 84 ETLMTLFKVGGIV 96 (139)
Q Consensus 84 ~~~~~lL~~gG~i 96 (139)
+.+.+.|++|-++
T Consensus 77 ~~l~~~l~~g~iv 89 (298)
T TIGR00872 77 EELAPTLEKGDIV 89 (298)
T ss_pred HHHHhhCCCCCEE
Confidence 6666666665443
No 358
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=66.52 E-value=58 Score=27.54 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=49.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
..+|..||-++.......+.++..|+. .....++.+.+..+. .. .||+|++|-..+. -..+++.+..
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~---v~~a~~~~~al~~i~-----~~---~~~lvl~Di~mp~~~Gl~ll~~i~~ 72 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYE---VVTAESAEEALEALS-----ES---PFDLVLLDIRMPGMDGLELLKEIKS 72 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCe---EEEeCCHHHHHHHHh-----cC---CCCEEEEecCCCCCchHHHHHHHHh
Confidence 457999999999999999999999963 445567777777663 34 6999999975433 3445555544
No 359
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.49 E-value=35 Score=26.26 Aligned_cols=80 Identities=21% Similarity=0.184 Sum_probs=48.7
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHc-------CCC---------CcEEEEeCChHHHHHhhHHhhhcccCCCce
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKV-------EVD---------LKINLMESRALPALDQLLKDEKIHFFFENF 67 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~-------g~~---------~~i~~~~~da~~~l~~~~~~~~~~~~~~~f 67 (139)
|...+..+.+|+.+|++++.++.+.+.+... |.. .++++. .+. + .+ . ..
T Consensus 20 A~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~---~~-------~---~a 84 (292)
T PRK07530 20 AHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-E---DL-------A---DC 84 (292)
T ss_pred HHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-H---Hh-------c---CC
Confidence 4445666789999999999998876544321 210 123322 222 1 12 3 57
Q ss_pred eEEEEcCCCc--chHHHHHHHhhcccCCeEEEE
Q 044253 68 DYAFVDAHKD--NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 68 D~If~D~~~~--~~~~~~~~~~~lL~~gG~ii~ 98 (139)
|+|+.-.+.. ....++..+.+.++++.+++.
T Consensus 85 D~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 85 DLVIEAATEDETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 8998865432 234567778788888887764
No 360
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=66.08 E-value=66 Score=28.68 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=47.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
+.+|..+|-++......+..++..|+. +. ...+..+.+..+.. .. +||+|++|...+. -...++.+..
T Consensus 681 ~~~vLivdD~~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~~~~----~~---~~Dlvl~D~~mp~~~G~~~~~~lr~ 750 (914)
T PRK11466 681 GLRLLLIEDNPLTQRITAEMLNTSGAQ--VV-AVGNAAQALETLQN----SE---PFAAALVDFDLPDYDGITLARQLAQ 750 (914)
T ss_pred CcceEEEeCCHHHHHHHHHHHHhcCCc--eE-EeCCHHHHHHHHHc----CC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 457999999999999999999888763 43 46677777665421 24 7999999975433 2334444443
No 361
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=66.03 E-value=39 Score=28.27 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=40.9
Q ss_pred hhhhcceeEE---eCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 8 TFFIYFIVAI---DVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 8 ~~~~~~v~~v---D~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
|+.....+.+ |+++.+.....+.+.+.=-++-+.+++|-..+.-.-+ ++ +||.||-.+.
T Consensus 128 AiAAGN~VVlKPSEls~n~a~~lakllp~Yld~~~~~VV~Ggv~ETt~LL------~~---rfD~IfyTGs 189 (477)
T KOG2456|consen 128 AIAAGNAVVLKPSELSPNTAKLLAKLLPQYLDQDLIRVVNGGVPETTELL------KQ---RFDHIFYTGS 189 (477)
T ss_pred hhhcCCEEEechhhcChhHHHHHHHHHHHhcCcceEEEecCCCchHHHHH------Hh---hccEEEecCC
Confidence 3334444444 8888888888777776622467999999888874433 46 8999998753
No 362
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.02 E-value=24 Score=27.37 Aligned_cols=79 Identities=19% Similarity=0.094 Sum_probs=44.9
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHH-cCC--C--------CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKK-VEV--D--------LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~-~g~--~--------~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D 73 (139)
...+..+.+|+.+|.+++.++.+++.+.. .+. . .++++ ..|..+.+ . ..|+||.-
T Consensus 21 ~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~----------~---~aDlVi~a 86 (311)
T PRK06130 21 ALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV----------S---GADLVIEA 86 (311)
T ss_pred HHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----------c---cCCEEEEe
Confidence 34445567899999999999988875432 121 0 11221 12222221 3 57899886
Q ss_pred CCCc--chHHHHHHHhhcccCCeEEE
Q 044253 74 AHKD--NYRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 74 ~~~~--~~~~~~~~~~~lL~~gG~ii 97 (139)
.+.. ....++..+.+.++++.+++
T Consensus 87 v~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 87 VPEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred ccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 5432 23456666666666665554
No 363
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=65.93 E-value=25 Score=26.86 Aligned_cols=76 Identities=8% Similarity=-0.096 Sum_probs=43.6
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCC---CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHH
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVD---LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRE 84 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~---~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~ 84 (139)
+..+.+|+.++.+++.++..+++ |+. ....... ....-... .. .+|+|++-.........++
T Consensus 20 ~~~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~-~~~~~~~~-------~~---~~d~vila~k~~~~~~~~~ 84 (304)
T PRK06522 20 AQAGHDVTLVARRGAHLDALNEN----GLRLEDGEITVPV-LAADDPAE-------LG---PQDLVILAVKAYQLPAALP 84 (304)
T ss_pred HhCCCeEEEEECChHHHHHHHHc----CCcccCCceeecc-cCCCChhH-------cC---CCCEEEEecccccHHHHHH
Confidence 44467899999988776655542 331 1111000 00000111 13 7999999876556677788
Q ss_pred HHhhcccCCeEEEE
Q 044253 85 TLMTLFKVGGIVIY 98 (139)
Q Consensus 85 ~~~~lL~~gG~ii~ 98 (139)
.+.+.+.++..++.
T Consensus 85 ~l~~~l~~~~~iv~ 98 (304)
T PRK06522 85 SLAPLLGPDTPVLF 98 (304)
T ss_pred HHhhhcCCCCEEEE
Confidence 88888877766553
No 364
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=65.85 E-value=11 Score=29.01 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=24.9
Q ss_pred ceeEEEEcCCCcchHHHHHHHhhcccCCeEEEE
Q 044253 66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.+|+||+-.........++.+.+.+.++..++.
T Consensus 68 ~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 68 PFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 799999887655667777778777877776653
No 365
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=65.49 E-value=19 Score=29.13 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=44.8
Q ss_pred ceeEEeCCccHHHHHHHHHHHc----CCCCcEEEEe----CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHH
Q 044253 13 FIVAIDVSRESSETGLPIIKKV----EVDLKINLME----SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRE 84 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~----g~~~~i~~~~----~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~ 84 (139)
+|+++|.+++.++.+++.+... |.. ..++. .+..+.+..+.. .. .+|.||..... ...+.
T Consensus 205 ~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v~~~t~----g~---g~D~vid~~g~---~~~~~ 272 (410)
T cd08238 205 LLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATLMELTG----GQ---GFDDVFVFVPV---PELVE 272 (410)
T ss_pred eEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHHHHHhC----CC---CCCEEEEcCCC---HHHHH
Confidence 7999999999999998853211 221 12222 233333333321 24 69988875532 34567
Q ss_pred HHhhcccCCeEEEE
Q 044253 85 TLMTLFKVGGIVIY 98 (139)
Q Consensus 85 ~~~~lL~~gG~ii~ 98 (139)
...+.++++|.+++
T Consensus 273 ~a~~~l~~~G~~v~ 286 (410)
T cd08238 273 EADTLLAPDGCLNF 286 (410)
T ss_pred HHHHHhccCCeEEE
Confidence 77889998886654
No 366
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=65.38 E-value=39 Score=24.03 Aligned_cols=65 Identities=6% Similarity=-0.029 Sum_probs=42.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~ 87 (139)
.++..+|-++...+..+..+...|+. + ....+..+.+.... .. .+|+|++|..... ....++.+.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~--v-~~~~~~~~~~~~~~-----~~---~~dlvild~~l~~~~g~~~~~~lr 68 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMR--V-FEAETLQRGLLEAA-----TR---KPDLIILDLGLPDGDGIEFIRDLR 68 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCE--E-EEeCCHHHHHHHHh-----cC---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 36788999999999999988877652 2 23456666555442 35 7999999964332 233444443
No 367
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.31 E-value=48 Score=26.95 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=45.1
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEE--eCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLM--ESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~--~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~ 85 (139)
++..+++++||++++-.+.|++ .|..+-++-. +..+.+.+.++. +. .+|+-|=-.. ..+.+.+
T Consensus 214 a~GAsrIIgvDiN~~Kf~~ak~----fGaTe~iNp~d~~~~i~evi~EmT-----dg---GvDysfEc~G---~~~~m~~ 278 (375)
T KOG0022|consen 214 AAGASRIIGVDINPDKFEKAKE----FGATEFINPKDLKKPIQEVIIEMT-----DG---GVDYSFECIG---NVSTMRA 278 (375)
T ss_pred hcCcccEEEEecCHHHHHHHHh----cCcceecChhhccccHHHHHHHHh-----cC---CceEEEEecC---CHHHHHH
Confidence 4446789999999999999986 4553322222 224667776664 34 6888774332 1334445
Q ss_pred HhhcccCC-eEEEE
Q 044253 86 LMTLFKVG-GIVIY 98 (139)
Q Consensus 86 ~~~lL~~g-G~ii~ 98 (139)
++.-.++| |.-++
T Consensus 279 al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 279 ALESCHKGWGKSVV 292 (375)
T ss_pred HHHHhhcCCCeEEE
Confidence 55555555 54433
No 368
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=65.15 E-value=18 Score=27.49 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=56.3
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcC------CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE--cCCCcc--
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVE------VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV--DAHKDN-- 78 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g------~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~--D~~~~~-- 78 (139)
....-+.+.||.....++.++.++.+. .-.++.++..++..+++.+..+ .+ -.-..|+ |+....
T Consensus 82 fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k---gq---Lskmff~fpdpHfk~~k 155 (249)
T KOG3115|consen 82 FPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK---GQ---LSKMFFLFPDPHFKARK 155 (249)
T ss_pred CccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh---cc---cccceeecCChhHhhhh
Confidence 345668999999999999999988664 2246889999999999887543 22 1222222 442111
Q ss_pred ------hHHHHHHHhhcccCCeEEEE
Q 044253 79 ------YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ------~~~~~~~~~~lL~~gG~ii~ 98 (139)
-..++....-+|++||.+..
T Consensus 156 hk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 156 HKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred ccceeechhHHHHHHhhhhcCceEEE
Confidence 12345556678999999865
No 369
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=65.15 E-value=62 Score=25.01 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=41.7
Q ss_pred hhhhcceeEEeCCccH---HHHHHHHHHHcCCCCcEEEEeC----ChHHH----HHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 8 TFFIYFIVAIDVSRES---SETGLPIIKKVEVDLKINLMES----RALPA----LDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~---~~~Ar~n~~~~g~~~~i~~~~~----da~~~----l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
+..+.+|..+|.|... .+..+.+.+..|+ .++.. |.... +.... .. .||+|++|.+.
T Consensus 97 ~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i----~~~~~~~~~dp~~~~~~~l~~~~-----~~---~~D~ViIDT~G 164 (272)
T TIGR00064 97 KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGV----DVIKQKEGADPAAVAFDAIQKAK-----AR---NIDVVLIDTAG 164 (272)
T ss_pred HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCe----EEEeCCCCCCHHHHHHHHHHHHH-----HC---CCCEEEEeCCC
Confidence 3345678888888643 3444555555553 33321 22221 22111 24 79999999753
Q ss_pred cch--HHHH---HHHhhccc------CCeEEEEeCC
Q 044253 77 DNY--RNYR---ETLMTLFK------VGGIVIYDNT 101 (139)
Q Consensus 77 ~~~--~~~~---~~~~~lL~------~gG~ii~~~~ 101 (139)
... ...+ ..+.+.+. +.+++++-+.
T Consensus 165 ~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a 200 (272)
T TIGR00064 165 RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDA 200 (272)
T ss_pred CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEEC
Confidence 322 2222 33334444 6666665433
No 370
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=65.10 E-value=56 Score=27.30 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=40.4
Q ss_pred hhcceeEEeCCccH---HHHHHHHHHHcCCCCcEEEEe----CChHH----HHHhhHHhhhcccCCCceeEEEEcCCCcc
Q 044253 10 FIYFIVAIDVSRES---SETGLPIIKKVEVDLKINLME----SRALP----ALDQLLKDEKIHFFFENFDYAFVDAHKDN 78 (139)
Q Consensus 10 ~~~~v~~vD~s~~~---~~~Ar~n~~~~g~~~~i~~~~----~da~~----~l~~~~~~~~~~~~~~~fD~If~D~~~~~ 78 (139)
.+.+|..|+.|+.. .++.+.+.+..++ .++. .|... .+.... .. .||+|++|.+...
T Consensus 127 ~G~kV~lV~~D~~R~aA~eQLk~~a~~~~v----p~~~~~~~~dp~~i~~~~l~~~~-----~~---~~DvViIDTaGr~ 194 (429)
T TIGR01425 127 KGFKPCLVCADTFRAGAFDQLKQNATKARI----PFYGSYTESDPVKIASEGVEKFK-----KE---NFDIIIVDTSGRH 194 (429)
T ss_pred CCCCEEEEcCcccchhHHHHHHHHhhccCC----eEEeecCCCCHHHHHHHHHHHHH-----hC---CCCEEEEECCCCC
Confidence 45678888887654 3333444444443 3221 34322 223222 24 7999999975332
Q ss_pred h--HHHHHH---HhhcccCCeEEEEeCC
Q 044253 79 Y--RNYRET---LMTLFKVGGIVIYDNT 101 (139)
Q Consensus 79 ~--~~~~~~---~~~lL~~gG~ii~~~~ 101 (139)
. ...++. +.+...|.-++++-+.
T Consensus 195 ~~d~~lm~El~~i~~~~~p~e~lLVlda 222 (429)
T TIGR01425 195 KQEDSLFEEMLQVAEAIQPDNIIFVMDG 222 (429)
T ss_pred cchHHHHHHHHHHhhhcCCcEEEEEecc
Confidence 1 223333 3345566655554433
No 371
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=65.03 E-value=29 Score=25.28 Aligned_cols=56 Identities=16% Similarity=0.123 Sum_probs=39.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
.++..||-++...+..++.++..+.. .+.....++.+.+..+. .. .+|+||+|...
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~~~-----~~---~~dlv~lDi~~ 57 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDI-EIVGECSNAIEAIGAIH-----RL---KPDVVFLDIQM 57 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCc-EEEEEeCCHHHHHHHHH-----hc---CCCEEEEeCCC
Confidence 46788999999999999888876631 12223557777765543 34 79999999754
No 372
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=64.29 E-value=45 Score=23.08 Aligned_cols=55 Identities=13% Similarity=-0.043 Sum_probs=36.6
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
+|..+|-++......++.+...+- -.+.....+..+.+..+. .. .+|+|++|...
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~l~~~~-----~~---~~dlvi~d~~~ 57 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPD-LQVVAEFGSGREALAGLP-----GR---GVQVCICDISM 57 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCC-cEEEEEECCHHHHHHHHh-----cC---CCCEEEEeCCC
Confidence 678899999888888877754321 122334566777665542 35 79999999643
No 373
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=64.11 E-value=46 Score=27.11 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=20.2
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHH
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGL 28 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar 28 (139)
|.|...+..+.+|+++|++++.++..+
T Consensus 14 ~lA~~La~~G~~V~~~d~~~~~v~~l~ 40 (411)
T TIGR03026 14 PLAALLADLGHEVTGVDIDQEKVDKLN 40 (411)
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHhh
Confidence 345555666789999999999887654
No 374
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=63.72 E-value=58 Score=28.98 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=42.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
.+|..||-++......++.++..|.. +. ...+..+.+..+. .. .||+|++|...+
T Consensus 691 ~~iLivdd~~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~~~-----~~---~~dlil~D~~mp 745 (921)
T PRK15347 691 LQILLVDDVETNRDIIGMMLVELGQQ--VT-TAASGTEALELGR-----QH---RFDLVLMDIRMP 745 (921)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCE--EE-EECCHHHHHHHHh-----cC---CCCEEEEeCCCC
Confidence 47999999999999999999988862 33 4567777776553 35 899999997543
No 375
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=63.49 E-value=6.7 Score=29.98 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=19.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKK 33 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~ 33 (139)
....|++.|+|+++++.|++|+..
T Consensus 76 ~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 76 RLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp GEEEEEEEES-HHHHHHHHHHHHC
T ss_pred HHHhHhcccCCHHHHHHHHHhhhh
Confidence 456799999999999999999754
No 376
>PRK10904 DNA adenine methylase; Provisional
Probab=62.79 E-value=26 Score=27.09 Aligned_cols=29 Identities=3% Similarity=-0.096 Sum_probs=23.1
Q ss_pred CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 38 LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 38 ~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
.++++.++|+.+.+... . +=|+|++||+.
T Consensus 156 ~~v~i~~~Df~~~i~~~-------~---~~~fvYlDPPY 184 (271)
T PRK10904 156 QNAFFYCESYADSMARA-------D---KGSVVYCDPPY 184 (271)
T ss_pred cCCEEEECCHHHHHhhc-------C---CCcEEEECCCC
Confidence 35899999999998753 3 45799999976
No 377
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=62.61 E-value=44 Score=25.76 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=45.5
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHH-------HcCCC---------CcEEEEeCChHHHHHhhHHhhhcccCCCceeE
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIK-------KVEVD---------LKINLMESRALPALDQLLKDEKIHFFFENFDY 69 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~-------~~g~~---------~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~ 69 (139)
..+..+.+|+.+|.+++.++.+++.++ ..|.- .++++ ..+. +. + . ..|+
T Consensus 22 ~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~-~~---~-------~---~aD~ 86 (295)
T PLN02545 22 LAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNL-EE---L-------R---DADF 86 (295)
T ss_pred HHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCH-HH---h-------C---CCCE
Confidence 344557789999999999987766543 22210 01111 1222 11 1 2 5789
Q ss_pred EEEcCC--CcchHHHHHHHhhcccCCeEEEE
Q 044253 70 AFVDAH--KDNYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 70 If~D~~--~~~~~~~~~~~~~lL~~gG~ii~ 98 (139)
|+.-.. ......++..+...++++.+++.
T Consensus 87 Vieav~e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 87 IIEAIVESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred EEEcCccCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 988654 22234566777778888877653
No 378
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=62.51 E-value=14 Score=25.20 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=26.5
Q ss_pred ceeEEEEcCCCcchHHHHHHHhhcccCCeEEEE
Q 044253 66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.||+||+-.-..+....++.+.+.+.+++.+++
T Consensus 67 ~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 67 PYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp TESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred CCcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 899999987555667788899999999977765
No 379
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=62.49 E-value=40 Score=21.81 Aligned_cols=55 Identities=7% Similarity=-0.077 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253 23 SSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV 92 (139)
Q Consensus 23 ~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~ 92 (139)
++...++.+++.|+. +++...+..+.-.. .. .+|+|++-|.... .++.+.+.+.+
T Consensus 19 l~~k~~~~~~~~gi~--~~v~a~~~~~~~~~-------~~---~~Dvill~pqi~~---~~~~i~~~~~~ 73 (95)
T TIGR00853 19 LVNKMNKAAEEYGVP--VKIAAGSYGAAGEK-------LD---DADVVLLAPQVAY---MLPDLKKETDK 73 (95)
T ss_pred HHHHHHHHHHHCCCc--EEEEEecHHHHHhh-------cC---CCCEEEECchHHH---HHHHHHHHhhh
Confidence 556677888888984 88888888776332 24 7999999885433 34444444433
No 380
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.44 E-value=39 Score=28.98 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=41.0
Q ss_pred ceeEEEEcCCC--cchHH---HHHHHhhcccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCC
Q 044253 66 NFDYAFVDAHK--DNYRN---YRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSG 136 (139)
Q Consensus 66 ~fD~If~D~~~--~~~~~---~~~~~~~lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (139)
.||+|++|... .+-.. -+..+.+.-+|+=+|.+-..+.+ +.....+++||+.+.+++
T Consensus 466 gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg--------------~dsv~q~~~fn~al~~~~ 527 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVG--------------NDSVDQLKKFNRALADHS 527 (587)
T ss_pred CCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhC--------------cHHHHHHHHHHHHHhcCC
Confidence 89999999742 22333 34556677788888887666552 457788899999998887
No 381
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=62.10 E-value=40 Score=21.73 Aligned_cols=53 Identities=6% Similarity=-0.070 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 23 SSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 23 ~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+++.+++.++..|+. +++...+..+.-.. .. .||+|++-|... ..++.+.+..
T Consensus 15 ~~~ki~~~~~~~~~~--~~v~~~~~~~~~~~-------~~---~~Diil~~Pqv~---~~~~~i~~~~ 67 (96)
T cd05564 15 LVKKMKKAAEKRGID--AEIEAVPESELEEY-------ID---DADVVLLGPQVR---YMLDEVKKKA 67 (96)
T ss_pred HHHHHHHHHHHCCCc--eEEEEecHHHHHHh-------cC---CCCEEEEChhHH---HHHHHHHHHh
Confidence 566778888888984 89998888876322 25 799999987543 3344454433
No 382
>PRK09191 two-component response regulator; Provisional
Probab=61.89 E-value=62 Score=23.84 Aligned_cols=55 Identities=5% Similarity=-0.043 Sum_probs=39.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
.++..+|-++......+..++..|+. +.....+..+.+..+. .. .+|+|++|...
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~--~~~~~~~~~~~l~~l~-----~~---~~dlvi~d~~~ 192 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHR--VTGIARTRAEAVALAK-----KT---RPGLILADIQL 192 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCE--EEEEECCHHHHHHHHh-----cc---CCCEEEEecCC
Confidence 36889999999999999998866642 3334566666655542 34 79999999754
No 383
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=61.88 E-value=40 Score=27.52 Aligned_cols=73 Identities=21% Similarity=0.169 Sum_probs=46.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeC-ChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~-da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
..++++||++++.+++|++ .|..+-+.-... |+.+.+..+. .. ..|.+|--.. ....+++.+..
T Consensus 210 A~~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~vv~~i~~~T-----~g---G~d~~~e~~G---~~~~~~~al~~ 274 (366)
T COG1062 210 AGRIIAVDINPEKLELAKK----FGATHFVNPKEVDDVVEAIVELT-----DG---GADYAFECVG---NVEVMRQALEA 274 (366)
T ss_pred CceEEEEeCCHHHHHHHHh----cCCceeecchhhhhHHHHHHHhc-----CC---CCCEEEEccC---CHHHHHHHHHH
Confidence 4589999999999999986 455332222222 5666665553 23 5677754332 23367777787
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
++++|..++
T Consensus 275 ~~~~G~~v~ 283 (366)
T COG1062 275 THRGGTSVI 283 (366)
T ss_pred HhcCCeEEE
Confidence 888888765
No 384
>PRK08324 short chain dehydrogenase; Validated
Probab=61.86 E-value=61 Score=28.36 Aligned_cols=59 Identities=10% Similarity=-0.010 Sum_probs=37.0
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcCC
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
+..+++|+.++++++.++.+.+.+... .++.++.+|..+. +...... .. ++|.||..+.
T Consensus 443 ~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~---~g---~iDvvI~~AG 507 (681)
T PRK08324 443 AAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA---FG---GVDIVVSNAG 507 (681)
T ss_pred HHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH---cC---CCCEEEECCC
Confidence 344678999999998877666555432 3677887775432 2222111 23 6899998664
No 385
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=61.27 E-value=11 Score=31.81 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=34.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP 49 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~ 49 (139)
+..||++|.-.-|.+.|++-.+++|..++|+++.....+
T Consensus 89 aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 89 ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 457999999999999999999999999999998654433
No 386
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=61.05 E-value=41 Score=26.07 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=42.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|++++.+++....+++ .|...-+.....+....+..+.. .. .+|+|+ |.. .-...++.+.+.|+
T Consensus 192 ~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~----~~---~~d~vl-d~~--g~~~~~~~~~~~l~ 257 (345)
T cd08286 192 SKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTD----GR---GVDVVI-EAV--GIPATFELCQELVA 257 (345)
T ss_pred CeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhC----CC---CCCEEE-ECC--CCHHHHHHHHHhcc
Confidence 578888888777666653 35432233333343333333221 34 699887 432 12335677789999
Q ss_pred CCeEEEE
Q 044253 92 VGGIVIY 98 (139)
Q Consensus 92 ~gG~ii~ 98 (139)
++|.++.
T Consensus 258 ~~g~~v~ 264 (345)
T cd08286 258 PGGHIAN 264 (345)
T ss_pred CCcEEEE
Confidence 9999874
No 387
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=60.86 E-value=64 Score=23.65 Aligned_cols=77 Identities=6% Similarity=-0.058 Sum_probs=46.2
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc----CCCcchHHHHHHHhh
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD----AHKDNYRNYRETLMT 88 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D----~~~~~~~~~~~~~~~ 88 (139)
.+..+|-++-..+-.+..+...+..-.+.....++.+.+..+. .. .+|+|++| .+..+-...++.+.+
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-----~~---~pDlvLlDl~~~l~~~~g~~~i~~i~~ 73 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-----SL---RPSVVFINEDCFIHDASNSQRIKQIIN 73 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-----cc---CCCEEEEeCcccCCCCChHHHHHHHHH
Confidence 3567788888888888888765432123344677777765442 34 68999999 333333445555543
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
..|+..+++
T Consensus 74 -~~p~~~iiv 82 (207)
T PRK15411 74 -QHPNTLFIV 82 (207)
T ss_pred -HCCCCeEEE
Confidence 235555443
No 388
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=60.83 E-value=31 Score=27.61 Aligned_cols=77 Identities=19% Similarity=0.138 Sum_probs=45.4
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCC-hHHHHHhhHHhhhcccCCCceeEEEEcCCC---------------
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESR-ALPALDQLLKDEKIHFFFENFDYAFVDAHK--------------- 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~d-a~~~l~~~~~~~~~~~~~~~fD~If~D~~~--------------- 76 (139)
+|++++.+++..+.+++.. +. ..+.....+ ....+..+.. .. .+|+|+--...
T Consensus 211 ~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~----~~---~~D~vld~vg~~~~~~~~~~~~~~~~ 279 (386)
T cd08283 211 RVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTG----GR---GPDVCIDAVGMEAHGSPLHKAEQALL 279 (386)
T ss_pred EEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcC----CC---CCCEEEECCCCccccccccccccccc
Confidence 5999999999998888752 22 122222222 3333333211 24 68988653211
Q ss_pred ---cchHHHHHHHhhcccCCeEEEEeC
Q 044253 77 ---DNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 77 ---~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+....++.+.+.++++|.++.-.
T Consensus 280 ~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 280 KLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred ccccCchHHHHHHHHHhccCCEEEEEc
Confidence 112346777889999999998643
No 389
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=60.72 E-value=13 Score=30.59 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=15.6
Q ss_pred chhhhhhhcceeEEeCCccH
Q 044253 4 NLESTFFIYFIVAIDVSRES 23 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~ 23 (139)
|-..|..+.+|..||.|++.
T Consensus 143 A~~LA~~G~rVLlIDlDpQ~ 162 (405)
T PRK13869 143 AQYLALQGYRVLAVDLDPQA 162 (405)
T ss_pred HHHHHhcCCceEEEcCCCCC
Confidence 33456678899999999984
No 390
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=60.64 E-value=42 Score=21.54 Aligned_cols=68 Identities=10% Similarity=0.070 Sum_probs=44.8
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChH-HHHHhhHHhhhcccCCCc-eeEEEEcCCCc--chHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRAL-PALDQLLKDEKIHFFFEN-FDYAFVDAHKD--NYRNYRET 85 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~-~~l~~~~~~~~~~~~~~~-fD~If~D~~~~--~~~~~~~~ 85 (139)
...+|..+|-++......++.+...|. .+ ....+.. +.+..+. .. + +|+|++|...+ +-...++.
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~--~v-~~a~~g~~~al~~~~-----~~---~~~dlii~D~~mp~~~G~~~~~~ 72 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGY--EV-VEAADGEEEALELLR-----EL---PQPDLILLDINMPGMDGIELLRR 72 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCC--eE-EEeCChHHHHHHHHH-----hC---CCCCEEEEeCCCCCCCHHHHHHH
Confidence 356789999999999999999998883 22 2333553 5555542 12 3 99999997544 23344554
Q ss_pred Hhh
Q 044253 86 LMT 88 (139)
Q Consensus 86 ~~~ 88 (139)
+..
T Consensus 73 l~~ 75 (130)
T COG0784 73 LRA 75 (130)
T ss_pred HHh
Confidence 444
No 391
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=60.10 E-value=24 Score=27.97 Aligned_cols=74 Identities=8% Similarity=0.081 Sum_probs=49.0
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-------------
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY------------- 79 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~------------- 79 (139)
-+.++|+++.+++.-+.|+.. ..++.+|..+...+-.. .. .+|+|+-.+++..+
T Consensus 27 ~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~----~~---~~DvligGpPCQ~FS~aG~r~~~~D~R 93 (328)
T COG0270 27 IVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALR----KS---DVDVLIGGPPCQDFSIAGKRRGYDDPR 93 (328)
T ss_pred EEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhcc----cc---CCCEEEeCCCCcchhhcCcccCCcCcc
Confidence 378999999999999988753 46677787766432110 12 58999887654321
Q ss_pred ----HHHHHHHhhcccCCeEEEEeCC
Q 044253 80 ----RNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 80 ----~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.. +-.+...++| -+++++|+
T Consensus 94 ~~L~~~-~~r~I~~~~P-~~fv~ENV 117 (328)
T COG0270 94 GSLFLE-FIRLIEQLRP-KFFVLENV 117 (328)
T ss_pred ceeeHH-HHHHHHhhCC-CEEEEecC
Confidence 22 2345567777 77777877
No 392
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.99 E-value=54 Score=26.08 Aligned_cols=68 Identities=16% Similarity=0.085 Sum_probs=46.9
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhh-cccCCCceeEEEEcC
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEK-IHFFFENFDYAFVDA 74 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~-~~~~~~~fD~If~D~ 74 (139)
+...|.++++|+..-++.+..+.+++.+.......++.+++.|..+. +.++..... ... +.|+.+.++
T Consensus 52 a~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~---~ldvLInNA 122 (314)
T KOG1208|consen 52 ARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKEG---PLDVLINNA 122 (314)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcCC---CccEEEeCc
Confidence 34567778999999999999999988888744456788899886532 222222110 024 899999876
No 393
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=59.59 E-value=26 Score=21.90 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=42.2
Q ss_pred cceeEE-eCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 12 YFIVAI-DVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 12 ~~v~~v-D~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
.+|+.+ +.+++..+..++. .+ +.+...+..+.++ ..|+||+-.+.....+.++.+ ..+
T Consensus 26 ~~v~~~~~r~~~~~~~~~~~---~~----~~~~~~~~~~~~~-------------~advvilav~p~~~~~v~~~i-~~~ 84 (96)
T PF03807_consen 26 HEVIIVSSRSPEKAAELAKE---YG----VQATADDNEEAAQ-------------EADVVILAVKPQQLPEVLSEI-PHL 84 (96)
T ss_dssp GEEEEEEESSHHHHHHHHHH---CT----TEEESEEHHHHHH-------------HTSEEEE-S-GGGHHHHHHHH-HHH
T ss_pred eeEEeeccCcHHHHHHHHHh---hc----cccccCChHHhhc-------------cCCEEEEEECHHHHHHHHHHH-hhc
Confidence 577744 9998887776544 33 3444445555542 478999987766788888888 666
Q ss_pred cCCeEEE
Q 044253 91 KVGGIVI 97 (139)
Q Consensus 91 ~~gG~ii 97 (139)
.++..++
T Consensus 85 ~~~~~vi 91 (96)
T PF03807_consen 85 LKGKLVI 91 (96)
T ss_dssp HTTSEEE
T ss_pred cCCCEEE
Confidence 6776665
No 394
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.53 E-value=39 Score=26.97 Aligned_cols=80 Identities=10% Similarity=0.034 Sum_probs=47.8
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHH-------HcCC-----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIK-------KVEV-----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV 72 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~-------~~g~-----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~ 72 (139)
...+..+.+|+..|++++.++.+++.+. +.+. ..++++.. +..+. + . ..|+|+-
T Consensus 24 ~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a---v-------~---~aDlViE 89 (321)
T PRK07066 24 ARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC---V-------A---DADFIQE 89 (321)
T ss_pred HHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH---h-------c---CCCEEEE
Confidence 3445668899999999998887766443 2222 12233221 22111 1 3 6799987
Q ss_pred cCCCc--chHHHHHHHhhcccCCeEEEE
Q 044253 73 DAHKD--NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 73 D~~~~--~~~~~~~~~~~lL~~gG~ii~ 98 (139)
..+.. --..++..+.+.++++.+|..
T Consensus 90 avpE~l~vK~~lf~~l~~~~~~~aIlaS 117 (321)
T PRK07066 90 SAPEREALKLELHERISRAAKPDAIIAS 117 (321)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 65422 124567788888888875543
No 395
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=59.30 E-value=98 Score=27.76 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=42.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
..+|..||-++......++.++..|+. +. ...+..+.+..+. .. .||+|++|...+
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~a~~~l~-----~~---~~dlvl~D~~mp 757 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHK--VT-LAESGQSALECFH-----QH---AFDLALLDINLP 757 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCE--EE-EECCHHHHHHHHH-----CC---CCCEEEECCCCC
Confidence 346899999999999999999888862 33 4667777776653 35 899999997543
No 396
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=59.25 E-value=30 Score=25.94 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=42.9
Q ss_pred eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCC--------cch----
Q 044253 14 IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHK--------DNY---- 79 (139)
Q Consensus 14 v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~--------~~~---- 79 (139)
|++||+.|-. .. ..+.++++|...- +.++....+ .. ++|+|++|... .++
T Consensus 73 ivavDi~p~~-----------~~-~~V~~iq~d~~~~~~~~~l~~~l~-~~---~~DvV~sD~ap~~~g~~~~Dh~r~~~ 136 (205)
T COG0293 73 IVAVDILPMK-----------PI-PGVIFLQGDITDEDTLEKLLEALG-GA---PVDVVLSDMAPNTSGNRSVDHARSMY 136 (205)
T ss_pred EEEEECcccc-----------cC-CCceEEeeeccCccHHHHHHHHcC-CC---CcceEEecCCCCcCCCccccHHHHHH
Confidence 7888877632 22 3488888887632 222221111 23 68999999742 111
Q ss_pred --HHHHHHHhhcccCCeEEEEeCC
Q 044253 80 --RNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 80 --~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
...++.+...|++||.+++...
T Consensus 137 L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 137 LCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHHHHHHHHeeCCCCeEEEEEE
Confidence 1234556689999999997543
No 397
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=58.65 E-value=35 Score=28.64 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=46.7
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchH
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYR 80 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~ 80 (139)
|.|++.+..+.+|+..|++++..+...+. .|....++ ...+..++...+ + +.|+|++-.+. ....
T Consensus 4 ~mA~nL~~~G~~V~v~nrt~~~~~~l~~~---~g~~~g~~-~~~s~~e~v~~l-------~---~~~~Ii~mv~~g~~v~ 69 (459)
T PRK09287 4 NLALNIASHGYTVAVYNRTPEKTDEFLAE---EGKGKKIV-PAYTLEEFVASL-------E---KPRKILLMVKAGAPVD 69 (459)
T ss_pred HHHHHHHhCCCeEEEECCCHHHHHHHHHh---hCCCCCeE-eeCCHHHHHhhC-------C---CCCEEEEECCCchHHH
Confidence 45677788899999999999888766542 12111222 234455554433 2 35666654322 2334
Q ss_pred HHHHHHhhcccCCeEEE
Q 044253 81 NYRETLMTLFKVGGIVI 97 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii 97 (139)
..++.+.+.|.+|-++|
T Consensus 70 ~Vi~~l~~~l~~GdiiI 86 (459)
T PRK09287 70 AVIEQLLPLLEKGDIII 86 (459)
T ss_pred HHHHHHHhcCCCCCEEE
Confidence 45566666666655544
No 398
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=58.45 E-value=34 Score=29.07 Aligned_cols=28 Identities=7% Similarity=0.004 Sum_probs=22.3
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHH
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLP 29 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~ 29 (139)
|.|++.+..+.+|+..|++++..+...+
T Consensus 20 ~mA~nL~~~G~~V~V~NRt~~k~~~l~~ 47 (493)
T PLN02350 20 NLALNIAEKGFPISVYNRTTSKVDETVE 47 (493)
T ss_pred HHHHHHHhCCCeEEEECCCHHHHHHHHH
Confidence 4567777788999999999988776554
No 399
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=58.44 E-value=47 Score=29.83 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=46.1
Q ss_pred ceeEEEEcCCCcchHHHHHHHhhcccCCeEEEEeCCC---CCcccccccc--cCchhhhhchHHHHHHHHHHhhCCC
Q 044253 66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTL---WGGTVAMAEE--QVPEILRSTRQPNWNLDKLFASSGP 137 (139)
Q Consensus 66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (139)
+||++++|.....-++.+..+...++-||++++---. |......-.. ..|.-..-+.+-++.|.+-+.+|+.
T Consensus 92 t~~~~VlD~~~~l~pn~lar~v~TvrgGG~lvil~p~~~~w~~~~~~~~~~~~~~~~~~vt~rf~~rf~r~l~~~~~ 168 (758)
T COG1444 92 TFDLLVLDLTEGLDPNALARLVGTVRGGGLLVLLLPPWEEWKTLPTADSRRLSVPPFPDVTPRFNRRFIRSLSAHPD 168 (758)
T ss_pred hhheEEEecccCCCHHHHHHHHhheecceEEEEEcCchHhccccCchhhhcccCCCCcccchHHHHHHHHHHhcCCC
Confidence 8999999997766788899999999999999873222 2211111111 1111113356677888888887753
No 400
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=57.92 E-value=86 Score=24.23 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=42.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCC-------------------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEV-------------------DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV 72 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~-------------------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~ 72 (139)
..-+++..++.....+-..++.+|+ ..+++++..+..+....+. +. ..|.+++
T Consensus 130 Gk~IAip~d~~n~~r~L~lL~~~Gli~l~~~~~~~~t~~di~~n~~~v~~v~~~~~~~~~al~-----~g---~vDaa~i 201 (271)
T PRK11063 130 GSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDIVENPKNLKIVELEAPQLPRSLD-----DA---QIALAVI 201 (271)
T ss_pred CCEEEecCCCccHHHHHHHHHHCCCEEecCCCCCCCCHHHHhcCCCCCEEEECcHHHHHHhcc-----cc---cccEEEE
Confidence 4678899999888888888888887 2368888888887655542 34 6899988
Q ss_pred cCC
Q 044253 73 DAH 75 (139)
Q Consensus 73 D~~ 75 (139)
..+
T Consensus 202 ~~~ 204 (271)
T PRK11063 202 NTT 204 (271)
T ss_pred ChH
Confidence 764
No 401
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=57.37 E-value=58 Score=25.79 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=50.8
Q ss_pred chhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253 4 NLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY 82 (139)
Q Consensus 4 ~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~ 82 (139)
++-.|+.. +.++++-.+++..+.++ ..|-..-+.+...|..+.+.++.. .. .+|+||--.. ...
T Consensus 159 aiQlAk~~G~~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~----g~---gvDvv~D~vG----~~~ 223 (326)
T COG0604 159 AIQLAKALGATVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRELTG----GK---GVDVVLDTVG----GDT 223 (326)
T ss_pred HHHHHHHcCCcEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHHHcC----CC---CceEEEECCC----HHH
Confidence 33444443 36777777776555443 456544466667776666655531 24 6999976543 234
Q ss_pred HHHHhhcccCCeEEEEeCC
Q 044253 83 RETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~ 101 (139)
+...+..|+++|.++.-..
T Consensus 224 ~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 224 FAASLAALAPGGRLVSIGA 242 (326)
T ss_pred HHHHHHHhccCCEEEEEec
Confidence 5567788899999986433
No 402
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=57.13 E-value=58 Score=25.37 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=45.3
Q ss_pred hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
+. +|++++.+++..+.+++ .|...-+.....+..+.+.+... .. .+|+|+--... ...++.+.+.
T Consensus 196 G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~----~~---~~d~vid~~g~---~~~~~~~~~~ 261 (351)
T cd08233 196 GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTG----GG---GVDVSFDCAGV---QATLDTAIDA 261 (351)
T ss_pred CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhC----CC---CCCEEEECCCC---HHHHHHHHHh
Confidence 44 78888888888887754 35432223333344443433321 23 59988754331 2356677888
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 262 l~~~G~~v~~g 272 (351)
T cd08233 262 LRPRGTAVNVA 272 (351)
T ss_pred ccCCCEEEEEc
Confidence 99999988643
No 403
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=56.97 E-value=70 Score=25.28 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=43.9
Q ss_pred hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeC--ChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMES--RALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~--da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
++ +|++++.+++..+.+++ .|...-+..... +..+.+.++. .. .+|+||--... ...+..+.
T Consensus 210 G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~-----~~---g~d~vid~~g~---~~~~~~a~ 274 (368)
T cd08300 210 GASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT-----DG---GVDYTFECIGN---VKVMRAAL 274 (368)
T ss_pred CCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh-----CC---CCcEEEECCCC---hHHHHHHH
Confidence 45 69999999998887754 454311222211 2333333332 24 69988753322 23566777
Q ss_pred hcccCC-eEEEEeC
Q 044253 88 TLFKVG-GIVIYDN 100 (139)
Q Consensus 88 ~lL~~g-G~ii~~~ 100 (139)
+.|+++ |.++.-.
T Consensus 275 ~~l~~~~G~~v~~g 288 (368)
T cd08300 275 EACHKGWGTSVIIG 288 (368)
T ss_pred HhhccCCCeEEEEc
Confidence 889886 8887544
No 404
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=56.57 E-value=17 Score=29.48 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=15.0
Q ss_pred chhhhhhhcceeEEeCCccH
Q 044253 4 NLESTFFIYFIVAIDVSRES 23 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~ 23 (139)
|...+..+.+|..||.|+..
T Consensus 126 A~~La~~G~rVLlID~DpQ~ 145 (387)
T TIGR03453 126 AQYLALRGYRVLAIDLDPQA 145 (387)
T ss_pred HHHHHhcCCCEEEEecCCCC
Confidence 33455567899999999864
No 405
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=56.24 E-value=45 Score=28.01 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=21.0
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLP 29 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~ 29 (139)
.|...+..+.+|+..|++++..+.+.+
T Consensus 14 mA~nL~~~G~~V~v~drt~~~~~~l~~ 40 (467)
T TIGR00873 14 LALNMADHGFTVSVYNRTPEKTDEFLA 40 (467)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHHHHh
Confidence 456667778899999999998876654
No 406
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=56.18 E-value=67 Score=23.37 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=43.0
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+.+|++++.+++..+.+++ .|...-+.....+....+. ... .. .+|+|+..... ......+.+.
T Consensus 157 ~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~~~----~~---~~d~vi~~~~~---~~~~~~~~~~ 221 (271)
T cd05188 157 AGARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-LTG----GG---GADVVIDAVGG---PETLAQALRL 221 (271)
T ss_pred cCCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-Hhc----CC---CCCEEEECCCC---HHHHHHHHHh
Confidence 35688999998877776653 2332112222222222222 110 35 79999865432 1346667788
Q ss_pred ccCCeEEEEe
Q 044253 90 FKVGGIVIYD 99 (139)
Q Consensus 90 L~~gG~ii~~ 99 (139)
|+++|.++.-
T Consensus 222 l~~~G~~v~~ 231 (271)
T cd05188 222 LRPGGRIVVV 231 (271)
T ss_pred cccCCEEEEE
Confidence 8999998853
No 407
>PRK13856 two-component response regulator VirG; Provisional
Probab=55.91 E-value=71 Score=23.23 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=38.1
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
+|..+|-++......+..++..|. .+. ...+..+.+..+. .. .||+|++|...
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~---~~dlvi~d~~l 55 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAF--KVT-AVADSQQFNRVLA-----SE---TVDVVVVDLNL 55 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHh-----hC---CCCEEEEeCCC
Confidence 688899999999988888887764 233 3456666654442 35 79999999643
No 408
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=55.41 E-value=8.2 Score=26.36 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=18.5
Q ss_pred ceeEEEE--cCCCcc-hHHHHHHHhhcccCCeEEEEeC
Q 044253 66 NFDYAFV--DAHKDN-YRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 66 ~fD~If~--D~~~~~-~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
.||+|++ ||+... |. +--.+++++...|.+|+++
T Consensus 78 ~~DvvlmRkDPPfD~~yi-~aT~lLe~a~~~gv~VvN~ 114 (119)
T PF02951_consen 78 DFDVVLMRKDPPFDMEYI-YATYLLELAERQGVLVVND 114 (119)
T ss_dssp GSSEEEEE--S---HHHH-HHHHHHHHHHHTT-EEES-
T ss_pred cCCEEEEecCCCCChHHH-HHHHHHHHhhhCCcEEEeC
Confidence 6999998 565432 21 2234556777788888765
No 409
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.32 E-value=53 Score=25.94 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=46.9
Q ss_pred hhhhhhhcceeEEeCCccH-------HHHHHHHHHH-------cCC---------CCcEEEEeC-ChHHHHHhhHHhhhc
Q 044253 5 LESTFFIYFIVAIDVSRES-------SETGLPIIKK-------VEV---------DLKINLMES-RALPALDQLLKDEKI 60 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~-------~~~Ar~n~~~-------~g~---------~~~i~~~~~-da~~~l~~~~~~~~~ 60 (139)
.-.+..+.+|+.+|++++. ++.+++++.. .|. ..++++... |..+.+
T Consensus 7 ~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~--------- 77 (314)
T PRK08269 7 LAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADAL--------- 77 (314)
T ss_pred HHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHh---------
Confidence 4456678999999999963 5556655432 121 013333321 111111
Q ss_pred ccCCCceeEEEEcCCCc--chHHHHHHHhhcccCCeEEEE
Q 044253 61 HFFFENFDYAFVDAHKD--NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 61 ~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL~~gG~ii~ 98 (139)
. ..|+|+--..-. --..+|..+.+.+++++++..
T Consensus 78 -~---~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS 113 (314)
T PRK08269 78 -A---DADLVFEAVPEVLDAKREALRWLGRHVDADAIIAS 113 (314)
T ss_pred -c---cCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 3 578888765321 124567778888899888843
No 410
>PRK07109 short chain dehydrogenase; Provisional
Probab=55.21 E-value=1e+02 Score=24.24 Aligned_cols=60 Identities=13% Similarity=-0.077 Sum_probs=39.8
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcCC
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
+..+++|+.++.+++.++...+.++..| .++.++.+|+.+. +...... .. +.|.++..+.
T Consensus 29 a~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~---~g---~iD~lInnAg 94 (334)
T PRK07109 29 ARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE---LG---PIDTWVNNAM 94 (334)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH---CC---CCCEEEECCC
Confidence 4457889999999988887777776655 3578888886432 2222111 13 7899987653
No 411
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=55.17 E-value=1.6e+02 Score=26.39 Aligned_cols=79 Identities=13% Similarity=0.016 Sum_probs=49.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|..+|-++.......+.+...|+. + ....+..+.+..+... .. .||+|+++.+...-......+...-
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~--v-~~~~s~~~al~~l~~~---~~---~~DlVll~~~~~~g~~l~~~l~~~~ 767 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYE--P-VGFSTLAAAIAWISKG---PE---RFDLVLVDDRLLDEEQAAAALHAAA 767 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCE--E-EEeCCHHHHHHHHHhC---CC---CceEEEECCCCCCHHHHHHHHHhhC
Confidence 457999999999999999999988863 3 3345666665544211 23 5999999544333344455554332
Q ss_pred cCCeEEEE
Q 044253 91 KVGGIVIY 98 (139)
Q Consensus 91 ~~gG~ii~ 98 (139)
..--++++
T Consensus 768 ~~ipIIvl 775 (828)
T PRK13837 768 PTLPIILG 775 (828)
T ss_pred CCCCEEEE
Confidence 22234444
No 412
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=55.14 E-value=31 Score=26.54 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=22.3
Q ss_pred cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 39 KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 39 ~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
++++.++|+.+.+... . .=|+||+||+.
T Consensus 155 ~v~i~~~Df~~~i~~~-------~---~~dfvYlDPPY 182 (266)
T TIGR00571 155 NTTFLCGSFEKILAMV-------D---DDSFVYCDPPY 182 (266)
T ss_pred CCEEEECCHHHHHhhc-------C---CCCEEEECCCC
Confidence 6899999999997642 3 44699999976
No 413
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.76 E-value=78 Score=25.51 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=47.1
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF 90 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL 90 (139)
+++.||-+..++......+.++|- +.-.+..-.+.+..+. .- +.|+||+|...+ +-.++.+++..+.
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~---~~~~~~~~~eal~~Le-----~~---kpDLifldI~mp~~ngiefaeQvr~i~ 70 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGH---EVRSCSHPVEALDLLE-----VF---KPDLIFLDIVMPYMNGIEFAEQVRDIE 70 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccc---hhhccCCHHHHHHHHH-----hc---CCCEEEEEeecCCccHHHHHHHHHHhh
Confidence 578899999999999999988872 2222222333333332 24 799999997543 3456777777666
Q ss_pred cCCeEEE
Q 044253 91 KVGGIVI 97 (139)
Q Consensus 91 ~~gG~ii 97 (139)
+.=-++.
T Consensus 71 ~~v~iif 77 (361)
T COG3947 71 SAVPIIF 77 (361)
T ss_pred ccCcEEE
Confidence 4444443
No 414
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=54.48 E-value=51 Score=23.56 Aligned_cols=54 Identities=13% Similarity=-0.035 Sum_probs=38.1
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
.+|..+|-++......+..++..|+. +. ...+..+.+..+. .. .+|+|++|...
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~~~~~~~-----~~---~~dlvild~~l 56 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQ--PV-EAEDYDSAVNQLN-----EP---WPDLILLDWML 56 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHh-----cc---CCCEEEEeCCC
Confidence 46888999999999888888876652 33 4456666655442 34 79999999643
No 415
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=54.19 E-value=53 Score=28.84 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=42.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
..+|..||-++......+..++..|.. + ....+..+.+..+. .. .||+|++|...+
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~--v-~~a~~~~eal~~~~-----~~---~~Dlvl~D~~mp 580 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNS--V-DVAMTGKEALEMFD-----PD---EYDLVLLDIQLP 580 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCE--E-EEECCHHHHHHHhh-----cC---CCCEEEEcCCCC
Confidence 457999999999999999999888752 3 34567777776553 35 799999997543
No 416
>PRK14974 cell division protein FtsY; Provisional
Probab=54.16 E-value=1.1e+02 Score=24.51 Aligned_cols=83 Identities=11% Similarity=0.092 Sum_probs=44.6
Q ss_pred hcceeEEeCC---ccHHHHHHHHHHHcCCCCcEEEE-eCChHHH----HHhhHHhhhcccCCCceeEEEEcCCCcc--hH
Q 044253 11 IYFIVAIDVS---RESSETGLPIIKKVEVDLKINLM-ESRALPA----LDQLLKDEKIHFFFENFDYAFVDAHKDN--YR 80 (139)
Q Consensus 11 ~~~v~~vD~s---~~~~~~Ar~n~~~~g~~~~i~~~-~~da~~~----l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~ 80 (139)
+.+|..++.| ..+.+..+.+....|+. -+... .+|.... +.... .. .+|+|++|..... ..
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~-v~~~~~g~dp~~v~~~ai~~~~-----~~---~~DvVLIDTaGr~~~~~ 238 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVK-VIKHKYGADPAAVAYDAIEHAK-----AR---GIDVVLIDTAGRMHTDA 238 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCc-eecccCCCCHHHHHHHHHHHHH-----hC---CCCEEEEECCCccCCcH
Confidence 4567667666 34556666677777753 11111 1232222 22111 24 6999999975332 22
Q ss_pred HH---HHHHhhcccCCeEEEEeCCC
Q 044253 81 NY---RETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 81 ~~---~~~~~~lL~~gG~ii~~~~~ 102 (139)
.+ ++.+.+.++|..++++-+..
T Consensus 239 ~lm~eL~~i~~~~~pd~~iLVl~a~ 263 (336)
T PRK14974 239 NLMDELKKIVRVTKPDLVIFVGDAL 263 (336)
T ss_pred HHHHHHHHHHHhhCCceEEEeeccc
Confidence 33 34455667788877665554
No 417
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=54.02 E-value=72 Score=22.15 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=43.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
.++..+|-++......+..+...+- -.+.....+..+.+..+. .. .+|+|++|.... .-..++..+..
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~-----~~---~~dlvild~~l~~~~g~~~~~~l~~ 73 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSE-LQIVLKTDDYRITIDYLR-----TR---PVDLIIMDIDLPGTDGFTFLKRIKQ 73 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCC-ceEEEEeCCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 5688899999998888888875532 123334567666655442 35 799999997432 22334444443
No 418
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=53.86 E-value=78 Score=22.52 Aligned_cols=53 Identities=8% Similarity=0.117 Sum_probs=37.8
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
++..+|-++......+..++..|+ .+ ....+..+.+.... .. .+|+|++|...
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~--~v-~~~~~~~~~~~~~~-----~~---~~dlvild~~~ 54 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGF--VV-DLADNGLNGYHLAM-----TG---DYDLIILDIML 54 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCC--EE-EEECCHHHHHHHHh-----hC---CCCEEEEECCC
Confidence 477899999999999998887775 23 34456666655432 35 79999999743
No 419
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=53.84 E-value=61 Score=25.16 Aligned_cols=25 Identities=16% Similarity=-0.060 Sum_probs=17.1
Q ss_pred chhhhhhhcceeEEeCCccHHHHHH
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGL 28 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar 28 (139)
+......+.+|+..|++++..+.++
T Consensus 16 A~~L~~~g~~v~v~dr~~~~~~~~~ 40 (299)
T PRK12490 16 AERLREDGHEVVGYDVNQEAVDVAG 40 (299)
T ss_pred HHHHHhCCCEEEEEECCHHHHHHHH
Confidence 3444455678999999987766553
No 420
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=53.79 E-value=68 Score=22.52 Aligned_cols=54 Identities=13% Similarity=-0.019 Sum_probs=37.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
.+|..+|-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~---~~d~vi~d~~~ 56 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGY--DVV-EAGDGDEALTLIN-----ER---GPDLILLDWML 56 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCC--EEE-EEcCHHHHHHHHH-----hc---CCCEEEEECCC
Confidence 4688899999999888888887664 233 3455666655442 35 79999999643
No 421
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=53.79 E-value=39 Score=24.82 Aligned_cols=53 Identities=11% Similarity=0.261 Sum_probs=28.4
Q ss_pred HHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccCCeEEEEe
Q 044253 30 IIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 30 n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
.+.+.|+ .+.++..+. + + . .|.+|++-..........+.+.+.++.||.+++.
T Consensus 38 al~~~gi--~vDvv~~~~-d----L-------~---~Ykllv~P~~~~l~~~~~~~L~~yV~~GG~li~~ 90 (207)
T PF08532_consen 38 ALRELGI--PVDVVSPDD-D----L-------S---GYKLLVLPSLYILSPEFAERLRAYVENGGTLILT 90 (207)
T ss_dssp HHHTTT----EEEE-TTS--------------T---T-SEEEES--SC--HHH---HHHHHT-SS-EEE-
T ss_pred HHHHcCC--ceEEecCcC-C----c-------c---cCcEEEEeeEEEEChHHHHHHHHHHHCCCEEEEE
Confidence 4556676 488887765 2 2 3 6999998765544566777888999999999974
No 422
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=53.79 E-value=86 Score=26.20 Aligned_cols=84 Identities=11% Similarity=0.024 Sum_probs=43.3
Q ss_pred hhcceeEEeCCccH---HHHHHHHHHHcCCCCcEEEE--eCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHH
Q 044253 10 FIYFIVAIDVSRES---SETGLPIIKKVEVDLKINLM--ESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNY 82 (139)
Q Consensus 10 ~~~~v~~vD~s~~~---~~~Ar~n~~~~g~~~~i~~~--~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~ 82 (139)
.+.+|..++.|... .+..+......++. +... ..|....+...... -. .+|+|++|.+... ....
T Consensus 122 ~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp--~~~~~~~~d~~~i~~~al~~---~~---~~DvVIIDTAGr~~~d~~l 193 (437)
T PRK00771 122 KGLKVGLVAADTYRPAAYDQLKQLAEKIGVP--FYGDPDNKDAVEIAKEGLEK---FK---KADVIIVDTAGRHALEEDL 193 (437)
T ss_pred cCCeEEEecCCCCCHHHHHHHHHHHHHcCCc--EEecCCccCHHHHHHHHHHH---hh---cCCEEEEECCCcccchHHH
Confidence 35577777777543 34445555555553 2211 23444433322111 13 5799999986322 2233
Q ss_pred HH---HHhhcccCCeEEEEeCC
Q 044253 83 RE---TLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 83 ~~---~~~~lL~~gG~ii~~~~ 101 (139)
++ .+...+.|..++++-+.
T Consensus 194 m~El~~l~~~~~pdevlLVvda 215 (437)
T PRK00771 194 IEEMKEIKEAVKPDEVLLVIDA 215 (437)
T ss_pred HHHHHHHHHHhcccceeEEEec
Confidence 33 44456678777765444
No 423
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=53.75 E-value=1.5e+02 Score=27.03 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=42.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
.+|..+|-++......++.++..|. .+ ....|..+.+..+. .. .||+|++|...+
T Consensus 802 ~~ILvVdD~~~~~~~l~~~L~~~G~--~v-~~a~~g~eal~~l~-----~~---~~DlVl~D~~mP 856 (924)
T PRK10841 802 MMILVVDDHPINRRLLADQLGSLGY--QC-KTANDGVDALNVLS-----KN---HIDIVLTDVNMP 856 (924)
T ss_pred CEEEEECCCHHHHHHHHHHHHHcCC--EE-EEECCHHHHHHHHH-----hC---CCCEEEEcCCCC
Confidence 4689999999999999999998886 23 45567777776553 35 799999997543
No 424
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=53.57 E-value=67 Score=26.59 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=18.6
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGL 28 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar 28 (139)
.|...+. +.+|+++|++++.++..+
T Consensus 21 mA~~la~-~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 21 LAVEFGK-SRQVVGFDVNKKRILELK 45 (425)
T ss_pred HHHHHhc-CCEEEEEeCCHHHHHHHH
Confidence 3444443 478999999999988876
No 425
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=53.06 E-value=60 Score=25.43 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=41.4
Q ss_pred hcceeEEeC---CccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 11 IYFIVAIDV---SRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~---s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
+++|++++. +++..+.++ ..|.. .+.....+..+ .. . .. .+|+||--... ...+....
T Consensus 196 G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~-~~-~------~~---~~d~vid~~g~---~~~~~~~~ 256 (355)
T cd08230 196 GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE-VK-L------VG---EFDLIIEATGV---PPLAFEAL 256 (355)
T ss_pred CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh-hh-h------cC---CCCEEEECcCC---HHHHHHHH
Confidence 557888887 566655554 34542 22211122211 11 1 24 69988765542 23567788
Q ss_pred hcccCCeEEEEeCC
Q 044253 88 TLFKVGGIVIYDNT 101 (139)
Q Consensus 88 ~lL~~gG~ii~~~~ 101 (139)
+.|+++|.++.-..
T Consensus 257 ~~l~~~G~~v~~G~ 270 (355)
T cd08230 257 PALAPNGVVILFGV 270 (355)
T ss_pred HHccCCcEEEEEec
Confidence 99999999986443
No 426
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=53.00 E-value=27 Score=17.03 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=31.7
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
++..+|-++.......+.+...|.. +. ...+......... .. .+|++++|.
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~-----~~---~~~~vi~~~ 52 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYE--VD-EATDGEEALELLK-----EE---KPDLILLDI 52 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcE--EE-EeCCHHHHHHHHH-----hc---CCCEEEEec
Confidence 4677888888888888777766642 22 2234444433332 24 699999875
No 427
>PRK11173 two-component response regulator; Provisional
Probab=52.97 E-value=85 Score=22.66 Aligned_cols=75 Identities=9% Similarity=0.032 Sum_probs=47.3
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l 89 (139)
.++..+|-++......+..++..|.. + ....+..+.+..+. .. .+|+|++|..... .....+.+...
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~--v-~~~~~~~~~~~~~~-----~~---~~dlvild~~l~~~~g~~~~~~lr~~ 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYD--V-FEATDGAEMHQILS-----EN---DINLVIMDINLPGKNGLLLARELREQ 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCE--E-EEECCHHHHHHHHh-----hC---CCCEEEEcCCCCCCCHHHHHHHHhcC
Confidence 46889999999999999999887752 2 34456666655442 35 7999999975432 23344444332
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
..-.++++
T Consensus 73 -~~~pii~l 80 (237)
T PRK11173 73 -ANVALMFL 80 (237)
T ss_pred -CCCCEEEE
Confidence 23344544
No 428
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=52.93 E-value=87 Score=22.80 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=49.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
.+|..+|-++...+..+..++.. ++ .+.....+..+.+..+. .. .+|+|++|..... ....++.+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~--~~v~~a~~~~~al~~~~-----~~---~pdlvllD~~mp~~~gle~~~~l~~ 74 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGF--SQILLAGNLAQARMMIE-----RF---KPGLILLDNYLPDGRGINLLHELVQ 74 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHH-----hc---CCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 47888999999988888888754 33 24455677777766553 35 7999999974432 2344454544
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
.-.+..++++
T Consensus 75 ~~~~~~iivl 84 (225)
T PRK10046 75 AHYPGDVVFT 84 (225)
T ss_pred cCCCCCEEEE
Confidence 3233345554
No 429
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=52.80 E-value=14 Score=30.51 Aligned_cols=78 Identities=18% Similarity=0.142 Sum_probs=44.7
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc------CCCcchHHHHHHH
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD------AHKDNYRNYRETL 86 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D------~~~~~~~~~~~~~ 86 (139)
.++.+|-|+..-++.-...+..+. .......+|+..-...+.. .. .|++|++- .....+..+++.+
T Consensus 140 sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp~----ad---~ytl~i~~~eLl~d~~ek~i~~~ie~l 211 (484)
T COG5459 140 SAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLPA----AD---LYTLAIVLDELLPDGNEKPIQVNIERL 211 (484)
T ss_pred hhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCCc----cc---eeehhhhhhhhccccCcchHHHHHHHH
Confidence 467777777655554433333222 2334444454433222211 24 68888762 2333345688999
Q ss_pred hhcccCCeEEEE
Q 044253 87 MTLFKVGGIVIY 98 (139)
Q Consensus 87 ~~lL~~gG~ii~ 98 (139)
+.+++|||.+++
T Consensus 212 w~l~~~gg~lVi 223 (484)
T COG5459 212 WNLLAPGGHLVI 223 (484)
T ss_pred HHhccCCCeEEE
Confidence 999999999876
No 430
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=52.73 E-value=13 Score=28.85 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=39.9
Q ss_pred CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC--CCcch----HHHHHHHhhcccCCeEEEE
Q 044253 38 LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA--HKDNY----RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 38 ~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~--~~~~~----~~~~~~~~~lL~~gG~ii~ 98 (139)
....++.||+.+.+++.... .. .+|..|.|+ +..++ .+++..+.++..+||.+.-
T Consensus 146 ~~l~l~~gd~~~~~p~~~~~---~~---~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t 206 (252)
T COG4121 146 LLLGLVIGDAGDGIPPVPRR---RP---GTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLAT 206 (252)
T ss_pred heeeeeeeehhhcCCccccc---cc---CccEEecCCccccCChhhccHHHHHHHHhhcCCCCceec
Confidence 35788999999988765311 12 589999997 23232 4577888899999999974
No 431
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=52.58 E-value=79 Score=25.05 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=42.8
Q ss_pred hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
+. +|+++|.+++..+.|++ .|...-+.... .+..+.+.++. .. .+|+||--... ...+....
T Consensus 209 G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~---g~d~vid~~G~---~~~~~~~~ 273 (368)
T TIGR02818 209 KASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-----DG---GVDYSFECIGN---VNVMRAAL 273 (368)
T ss_pred CCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-----CC---CCCEEEECCCC---HHHHHHHH
Confidence 44 79999999998888865 45432122111 11223233321 23 68987743332 33466677
Q ss_pred hcccCC-eEEEEeC
Q 044253 88 TLFKVG-GIVIYDN 100 (139)
Q Consensus 88 ~lL~~g-G~ii~~~ 100 (139)
+.++++ |.++.-.
T Consensus 274 ~~~~~~~G~~v~~g 287 (368)
T TIGR02818 274 ECCHKGWGESIIIG 287 (368)
T ss_pred HHhhcCCCeEEEEe
Confidence 888886 8877543
No 432
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=52.49 E-value=58 Score=27.29 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=45.6
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR 80 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~ 80 (139)
...+|..+|-+.......++.+...|. ++ ....+....+..+. +. +||+|++|...+.+.
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~--~v-~~a~~~~~Al~~~~-----e~---~~dlil~d~~mp~~d 190 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGF--RV-VEATDGEEALLQLA-----EL---PPDLVLLDANMPDMD 190 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccc--ee-eeecCHHHHHHHHh-----cC---CCcEEEEecCCCccC
Confidence 457899999999999999999998884 23 34456777766653 45 899999998766554
No 433
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=52.38 E-value=46 Score=26.94 Aligned_cols=73 Identities=11% Similarity=0.073 Sum_probs=39.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
+.+|+.+|++++.++.+.+.+ +. .+.....+... +.+.. . .+|+|+.... ...+.-+.+...
T Consensus 190 Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~~~-l~~~l------~---~aDvVI~a~~~~g~~~p~lit~~~l 254 (370)
T TIGR00518 190 GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNAYE-IEDAV------K---RADLLIGAVLIPGAKAPKLVSNSLV 254 (370)
T ss_pred CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCHHH-HHHHH------c---cCCEEEEccccCCCCCCcCcCHHHH
Confidence 568999999988766554432 21 12222223222 22221 3 6899997642 111211224555
Q ss_pred hcccCCeEEEE
Q 044253 88 TLFKVGGIVIY 98 (139)
Q Consensus 88 ~lL~~gG~ii~ 98 (139)
..++++++++-
T Consensus 255 ~~mk~g~vIvD 265 (370)
T TIGR00518 255 AQMKPGAVIVD 265 (370)
T ss_pred hcCCCCCEEEE
Confidence 67788887663
No 434
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=52.36 E-value=8.3 Score=32.73 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=25.8
Q ss_pred ceeEEEEcCCCc------chHHHHHHHhhcccCCeEEEEeC
Q 044253 66 NFDYAFVDAHKD------NYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 66 ~fD~If~D~~~~------~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
+||+|=.+.-.. ....++-.+.++|+|||++++.+
T Consensus 427 TYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 427 TYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred chhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 899997775322 23556667779999999999854
No 435
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=52.20 E-value=63 Score=28.70 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=41.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
.+|..||-++......+..++..|.. + ....+..+.+..+. .. +||+|++|...+
T Consensus 668 ~~vLivdd~~~~~~~l~~~L~~~~~~--v-~~~~~~~~al~~~~-----~~---~~dlil~D~~mp 722 (919)
T PRK11107 668 LTVMAVDDNPANLKLIGALLEEQVEH--V-VLCDSGHQAVEQAK-----QR---PFDLILMDIQMP 722 (919)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCE--E-EEECCHHHHHHHHH-----hC---CCCEEEEeCCCC
Confidence 46999999999999999999887752 3 34567777766553 35 899999997543
No 436
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=52.10 E-value=87 Score=22.53 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=39.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
..+|..+|-++......+..+...|.. +. ...+..+.+..+. .. .||+|++|...
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~--v~-~~~~~~~~~~~~~-----~~---~~dlvild~~l 59 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQ--VR-SAANAEQMDRLLT-----RE---SFHLMVLDLML 59 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHh-----cC---CCCEEEEeCCC
Confidence 357889999999999999999887752 33 4456666554432 35 79999999643
No 437
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=52.08 E-value=51 Score=25.72 Aligned_cols=67 Identities=10% Similarity=0.021 Sum_probs=40.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+++|++++.+++..+.|++ .|... ++. ..+ .. .+ .+|+++..... ...+...++.|
T Consensus 189 G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~---~~------~~---~~d~~i~~~~~---~~~~~~~~~~l 244 (329)
T TIGR02822 189 GATVHVMTRGAAARRLALA----LGAAS---AGG--AYD---TP------PE---PLDAAILFAPA---GGLVPPALEAL 244 (329)
T ss_pred CCeEEEEeCChHHHHHHHH----hCCce---ecc--ccc---cC------cc---cceEEEECCCc---HHHHHHHHHhh
Confidence 5578888888887766654 55431 111 100 00 23 68876543221 23577788999
Q ss_pred cCCeEEEEeCC
Q 044253 91 KVGGIVIYDNT 101 (139)
Q Consensus 91 ~~gG~ii~~~~ 101 (139)
+++|.+++-..
T Consensus 245 ~~~G~~v~~G~ 255 (329)
T TIGR02822 245 DRGGVLAVAGI 255 (329)
T ss_pred CCCcEEEEEec
Confidence 99999987543
No 438
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=51.84 E-value=95 Score=25.35 Aligned_cols=19 Identities=16% Similarity=-0.034 Sum_probs=17.0
Q ss_pred hcceeEEeCCccHHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLP 29 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~ 29 (139)
+.+|+++|++++.++.+++
T Consensus 22 G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 22 NHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCcEEEEECCHHHHHHHHc
Confidence 6789999999999998875
No 439
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=51.79 E-value=37 Score=28.99 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=43.6
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCC--------------cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDL--------------KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA- 74 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~--------------~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~- 74 (139)
.++.|+.+|.+++.++.+++ .|... ..+....+..+...++..+. -. .+|+||.-.
T Consensus 186 lGA~V~v~d~~~~rle~a~~----lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~--~~---~~DIVI~Tal 256 (511)
T TIGR00561 186 LGAIVRAFDTRPEVKEQVQS----MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ--AK---EVDIIITTAL 256 (511)
T ss_pred CCCEEEEEeCCHHHHHHHHH----cCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH--hC---CCCEEEECcc
Confidence 36679999999998887775 23210 01111122222111111110 14 699998765
Q ss_pred --CCcchHHHHHHHhhcccCCeEEE
Q 044253 75 --HKDNYRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 75 --~~~~~~~~~~~~~~lL~~gG~ii 97 (139)
..+...-..+...+.+|+|++|+
T Consensus 257 ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 257 IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 22233234567788999999876
No 440
>PRK08655 prephenate dehydrogenase; Provisional
Probab=51.45 E-value=59 Score=26.95 Aligned_cols=15 Identities=0% Similarity=-0.031 Sum_probs=11.6
Q ss_pred hhcceeEEeCCccHH
Q 044253 10 FIYFIVAIDVSRESS 24 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~ 24 (139)
.+.+|++++.+++..
T Consensus 23 ~G~~V~v~~r~~~~~ 37 (437)
T PRK08655 23 KGFEVIVTGRDPKKG 37 (437)
T ss_pred CCCEEEEEECChHHH
Confidence 356799999998764
No 441
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=51.18 E-value=72 Score=24.57 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=40.2
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV 92 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~ 92 (139)
++++++.+++..+.+++ .|...-+.....+..+.+..... .. .+|+||--... ...+....+.|++
T Consensus 194 ~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~----~~---~~d~vld~~g~---~~~~~~~~~~l~~ 259 (347)
T cd05278 194 RIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTG----GR---GVDCVIEAVGF---EETFEQAVKVVRP 259 (347)
T ss_pred EEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcC----CC---CCcEEEEccCC---HHHHHHHHHHhhc
Confidence 67788777776666554 34321122222233333333211 24 79988743221 2356677789999
Q ss_pred CeEEEEe
Q 044253 93 GGIVIYD 99 (139)
Q Consensus 93 gG~ii~~ 99 (139)
+|.++.-
T Consensus 260 ~G~~v~~ 266 (347)
T cd05278 260 GGTIANV 266 (347)
T ss_pred CCEEEEE
Confidence 9998853
No 442
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=51.01 E-value=23 Score=21.11 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=39.2
Q ss_pred CccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-HHHHHHHhhcccCCeEEEE
Q 044253 20 SRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 20 s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-~~~~~~~~~lL~~gG~ii~ 98 (139)
+|.-+....+.++..|.. ++-.... .+.+.. . .==+|++++..... ..-++.+.+.+..||.+++
T Consensus 3 ~p~G~~a~~~~L~~~g~~--v~~~~~~-~~~l~~--------~---~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 3 APNGTYALYQLLEEQGVK--VERWRKP-YEALEA--------D---DGTLLVIGPDLRLSEPEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred CchHHHHHHHHHHHCCCe--eEEeccc-HHHhCC--------C---CCEEEEEeCCCCCCchHHHHHHHHHHHcCCEEEE
Confidence 344555666777777763 5544443 333322 1 12256777653333 3667888899999999986
No 443
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=50.76 E-value=1.4e+02 Score=24.50 Aligned_cols=66 Identities=8% Similarity=-0.080 Sum_probs=45.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
.+|..||-++......++.+...|+. + ....+..+.+..+. .. .||+|++|..... -..+++.+..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~--v-~~~~s~~~al~~l~-----~~---~~DlvllD~~lp~~dgl~~l~~ir~ 71 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLT--C-TTFENGNEVLEALA-----SK---TPDVLLSDIRMPGMDGLALLKQIKQ 71 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCE--E-EEECCHHHHHHHHh-----cC---CCCEEEECCCCCCCCHHHHHHHHHh
Confidence 47889999999999999999887752 3 34556666665543 35 7999999964332 2334444443
No 444
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=50.72 E-value=59 Score=26.28 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=51.1
Q ss_pred EEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEE-EcCCC----cchHHHHHHHhhcc
Q 044253 16 AIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAF-VDAHK----DNYRNYRETLMTLF 90 (139)
Q Consensus 16 ~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If-~D~~~----~~~~~~~~~~~~lL 90 (139)
-.+.+++..+.+++|++ |+.++++|..+++..-. -. +.|.++ +|+.- .....++..+.+-+
T Consensus 291 P~yl~~~~YEsir~n~~------RV~ihha~~iE~l~~k~-----ag---~Vdr~iLlDaqdwmtd~qln~lws~isrta 356 (414)
T COG5379 291 PAYLDEGVYESIRQNLR------RVAIHHADIIELLAGKP-----AG---NVDRYILLDAQDWMTDGQLNSLWSEISRTA 356 (414)
T ss_pred ChhhchhhHHHHHhhhh------heeeecccHHHHhccCC-----CC---CcceEEEecchhhcccchHHHHHHHHhhcc
Confidence 35678888888988875 59999999999886321 23 677655 56531 23456677788888
Q ss_pred cCCeEEEEeCC
Q 044253 91 KVGGIVIYDNT 101 (139)
Q Consensus 91 ~~gG~ii~~~~ 101 (139)
.+|..+|+...
T Consensus 357 ~~gA~VifRta 367 (414)
T COG5379 357 EAGARVIFRTA 367 (414)
T ss_pred CCCcEEEEecc
Confidence 99999997543
No 445
>PRK07063 short chain dehydrogenase; Provisional
Probab=50.25 E-value=94 Score=22.92 Aligned_cols=62 Identities=10% Similarity=-0.023 Sum_probs=40.0
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
+..+++|+.++.+++.++...+.+...+...++.++.+|..+ .+.++... .. +.|.++..+.
T Consensus 28 ~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~---~g---~id~li~~ag 95 (260)
T PRK07063 28 AREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA---FG---PLDVLVNNAG 95 (260)
T ss_pred HHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH---hC---CCcEEEECCC
Confidence 445778999999998887777776653233468888888653 22222211 24 7899987653
No 446
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=50.18 E-value=24 Score=27.41 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=27.5
Q ss_pred cceeEEeCCccH---HHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 12 YFIVAIDVSRES---SETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 12 ~~v~~vD~s~~~---~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
.+|..|+.|+.. .+..+.+.+..|+. +... .+..++...+. . -. .+|+|++|..
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p--~~~~-~~~~~l~~~l~-~---~~---~~d~vliDt~ 281 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVP--VKVA-RDPKELRKALD-R---LR---DKDLILIDTA 281 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCc--eecc-CCHHHHHHHHH-H---cc---CCCEEEEeCC
Confidence 578888888753 44444444445542 2222 22222222221 1 13 6899999864
No 447
>PRK11524 putative methyltransferase; Provisional
Probab=50.02 E-value=16 Score=28.29 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=23.6
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHc
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKV 34 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~ 34 (139)
++...+-+.+++|++++.++.|++.+...
T Consensus 225 AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~~ 253 (284)
T PRK11524 225 VAKASGRKFIGIEINSEYIKMGLRRLDVA 253 (284)
T ss_pred HHHHcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence 44445668999999999999999998643
No 448
>PRK08507 prephenate dehydrogenase; Validated
Probab=49.96 E-value=51 Score=25.15 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=12.9
Q ss_pred ceeEEeCCccHHHHHH
Q 044253 13 FIVAIDVSRESSETGL 28 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar 28 (139)
+|+++|++++.++.++
T Consensus 27 ~v~~~d~~~~~~~~~~ 42 (275)
T PRK08507 27 KVYGYDHNELHLKKAL 42 (275)
T ss_pred EEEEEcCCHHHHHHHH
Confidence 6899999998877664
No 449
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=49.82 E-value=72 Score=24.73 Aligned_cols=25 Identities=16% Similarity=-0.173 Sum_probs=17.8
Q ss_pred chhhhhhhcceeEEeCCccHHHHHH
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGL 28 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar 28 (139)
+......+.+|+.+|++++..+.+.
T Consensus 16 A~~L~~~g~~v~v~dr~~~~~~~~~ 40 (301)
T PRK09599 16 ARRLLRGGHEVVGYDRNPEAVEALA 40 (301)
T ss_pred HHHHHHCCCeEEEEECCHHHHHHHH
Confidence 3444555678999999998776653
No 450
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=49.72 E-value=74 Score=21.03 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccCCe
Q 044253 22 ESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGG 94 (139)
Q Consensus 22 ~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~gG 94 (139)
-+++..++.++..|+. +++...+..+.-.... .. .||+|++-|.... .++.+.+...+.|
T Consensus 16 lla~k~k~~~~e~gi~--~~i~a~~~~e~~~~~~-----~~---~~DvIll~PQi~~---~~~~i~~~~~~~~ 75 (104)
T PRK09590 16 MMAKKTTEYLKEQGKD--IEVDAITATEGEKAIA-----AA---EYDLYLVSPQTKM---YFKQFEEAGAKVG 75 (104)
T ss_pred HHHHHHHHHHHHCCCc--eEEEEecHHHHHHhhc-----cC---CCCEEEEChHHHH---HHHHHHHHhhhcC
Confidence 3455667788888884 8888888776532221 23 6999999875433 3344444444433
No 451
>PRK10818 cell division inhibitor MinD; Provisional
Probab=49.52 E-value=37 Score=25.64 Aligned_cols=18 Identities=17% Similarity=-0.189 Sum_probs=13.7
Q ss_pred hhhhhhhcceeEEeCCcc
Q 044253 5 LESTFFIYFIVAIDVSRE 22 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~ 22 (139)
...+..+.+|..||.|+.
T Consensus 25 ~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 25 TGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred HHHHHCCCeEEEEECCCC
Confidence 344556789999999985
No 452
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.49 E-value=38 Score=24.55 Aligned_cols=82 Identities=7% Similarity=-0.021 Sum_probs=55.2
Q ss_pred hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHH
Q 044253 5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYR 83 (139)
Q Consensus 5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~ 83 (139)
|+.++-+ ...+++|.++-.+.++|-..-+.|.....+|..-|..+. .+ . .|..+.+=+......++-
T Consensus 88 laaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~--dl-------~---dy~~vviFgaes~m~dLe 155 (199)
T KOG4058|consen 88 LAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV--DL-------R---DYRNVVIFGAESVMPDLE 155 (199)
T ss_pred hhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc--cc-------c---ccceEEEeehHHHHhhhH
Confidence 4556555 468999999999999998877888888899998888776 22 1 344443333222344445
Q ss_pred HHHhhcccCCeEEEE
Q 044253 84 ETLMTLFKVGGIVIY 98 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~ 98 (139)
..+..-+..+..++.
T Consensus 156 ~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 156 DKLRTELPANTRVVA 170 (199)
T ss_pred HHHHhhCcCCCeEEE
Confidence 556656677777764
No 453
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=49.04 E-value=1.3e+02 Score=23.61 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=47.6
Q ss_pred ceeEEeCCccHHHHHHHHHHH-cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 13 FIVAIDVSRESSETGLPIIKK-VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~-~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
+|..+|-++......++.+.. .++ .+.....+..+.+..+. .. .+|+|++|.... +....++.+..
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~--~vv~~a~~~~eal~~l~-----~~---~pDlVllD~~mp~~~G~e~l~~l~~- 70 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDH--EVVWVATDGAQAVERCA-----AQ---PPDVILMDLEMPRMDGVEATRRIMA- 70 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCC--EEEEEECCHHHHHHHHh-----cc---CCCEEEEcCCCCCCCHHHHHHHHHH-
Confidence 578899999999999988853 332 23334577777766553 35 799999996432 23344555543
Q ss_pred ccCCeEEEEe
Q 044253 90 FKVGGIVIYD 99 (139)
Q Consensus 90 L~~gG~ii~~ 99 (139)
.++--++++.
T Consensus 71 ~~~~pvivvs 80 (337)
T PRK12555 71 ERPCPILIVT 80 (337)
T ss_pred HCCCcEEEEe
Confidence 2343445543
No 454
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.87 E-value=40 Score=26.20 Aligned_cols=67 Identities=15% Similarity=0.252 Sum_probs=39.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcCCC-----cchH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYR 80 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~ 80 (139)
.++++||+.+- .++. .+.-+++|... .+.-+ + .+ +-|+|++|+.- ++..
T Consensus 75 ~kIVaVDLQ~M-----------aPI~-GV~qlq~DIT~~stae~Ii~hf----g-ge---kAdlVvcDGAPDvTGlHd~D 134 (294)
T KOG1099|consen 75 KKIVAVDLQPM-----------APIE-GVIQLQGDITSASTAEAIIEHF----G-GE---KADLVVCDGAPDVTGLHDLD 134 (294)
T ss_pred ccEEEEecccC-----------CccC-ceEEeecccCCHhHHHHHHHHh----C-CC---CccEEEeCCCCCccccccHH
Confidence 35788887653 2443 35666666542 22222 1 35 89999999732 2222
Q ss_pred HH---------HHHHhhcccCCeEEEE
Q 044253 81 NY---------RETLMTLFKVGGIVIY 98 (139)
Q Consensus 81 ~~---------~~~~~~lL~~gG~ii~ 98 (139)
+| +......|++||.++.
T Consensus 135 Ey~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 135 EYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 22 2333469999999985
No 455
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=48.59 E-value=70 Score=24.75 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=41.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+.++.+++..+.+++ .|...-+.....+..+.+..+ . .+|+++--.. ....++...+.|
T Consensus 187 G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~-------~---~~d~vi~~~g---~~~~~~~~~~~l 249 (333)
T cd08296 187 GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL-------G---GAKLILATAP---NAKAISALVGGL 249 (333)
T ss_pred CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc-------C---CCCEEEECCC---chHHHHHHHHHc
Confidence 5678999888887777743 354211222222333333221 3 5888874221 133566778899
Q ss_pred cCCeEEEE
Q 044253 91 KVGGIVIY 98 (139)
Q Consensus 91 ~~gG~ii~ 98 (139)
+++|.++.
T Consensus 250 ~~~G~~v~ 257 (333)
T cd08296 250 APRGKLLI 257 (333)
T ss_pred ccCCEEEE
Confidence 99999885
No 456
>PRK05854 short chain dehydrogenase; Provisional
Probab=48.43 E-value=91 Score=24.16 Aligned_cols=65 Identities=12% Similarity=0.006 Sum_probs=39.3
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhh-cccCCCceeEEEEcC
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEK-IHFFFENFDYAFVDA 74 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~-~~~~~~~fD~If~D~ 74 (139)
.+..+++|+.+.++.+..+.+.+.+....-..++.++..|..+. +..+..+.. ... +.|+++..+
T Consensus 34 La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~---~iD~li~nA 101 (313)
T PRK05854 34 LAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR---PIHLLINNA 101 (313)
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC---CccEEEECC
Confidence 34567899999999888777766665432223578888886542 111111100 024 689999765
No 457
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=48.39 E-value=96 Score=21.97 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=38.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
.+|..+|-++......+..+...|. .+. ...+..+.+..+ .. .+|+|++|...
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~~~~~~------~~---~~d~vl~d~~~ 54 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGF--NVI-VAHDGEQALDLL------DD---SIDLLLLDVMM 54 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHh------hc---CCCEEEEeCCC
Confidence 3688899999999999998887665 233 455666665543 34 79999999643
No 458
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=48.24 E-value=1.2e+02 Score=23.50 Aligned_cols=27 Identities=4% Similarity=-0.177 Sum_probs=20.5
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHH
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPI 30 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n 30 (139)
|...+..+.+|+.+|++++.++.+++.
T Consensus 18 A~~la~~G~~V~v~d~~~~~~~~~~~~ 44 (308)
T PRK06129 18 AIVFARAGHEVRLWDADPAAAAAAPAY 44 (308)
T ss_pred HHHHHHCCCeeEEEeCCHHHHHHHHHH
Confidence 344555677899999999988877654
No 459
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=48.14 E-value=31 Score=22.63 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCcc-----------------hHHHHHHHhhcccCCeEE
Q 044253 66 NFDYAFVDAHKDN-----------------YRNYRETLMTLFKVGGIV 96 (139)
Q Consensus 66 ~fD~If~D~~~~~-----------------~~~~~~~~~~lL~~gG~i 96 (139)
+||+|+-+||... |.-+++...++| +|.+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~ 47 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYL 47 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeE
Confidence 6899999886421 334667777887 7776
No 460
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.95 E-value=1.2e+02 Score=25.51 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=30.4
Q ss_pred hhcceeEEeCCccH---HHHHHHHHHHcCCCCcEEEE-eCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 10 FIYFIVAIDVSRES---SETGLPIIKKVEVDLKINLM-ESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 10 ~~~~v~~vD~s~~~---~~~Ar~n~~~~g~~~~i~~~-~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
.+.+|..++.|+.. .+..+...+..|+ .++ ..+..+....+. ...... .+|+|++|....
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgi----pv~v~~d~~~L~~aL~-~lk~~~---~~DvVLIDTaGR 331 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGF----EVIAVRDEAAMTRALT-YFKEEA---RVDYILIDTAGK 331 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCC----cEEecCCHHHHHHHHH-HHHhcc---CCCEEEEeCccc
Confidence 34578788887764 3444444445554 333 233333322221 000013 599999998543
No 461
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=47.79 E-value=38 Score=28.74 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=49.0
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC---------CC----cch
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA---------HK----DNY 79 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~---------~~----~~~ 79 (139)
.|+.+|+|+-.++.....-.. . ...+.+...|..... +. ++ +||+|+.-+ .. ...
T Consensus 73 dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l~--fe-----dE---SFdiVIdkGtlDal~~de~a~~~~~~v 140 (482)
T KOG2352|consen 73 DITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQLV--FE-----DE---SFDIVIDKGTLDALFEDEDALLNTAHV 140 (482)
T ss_pred CceeccccHHHHHHHHhcccc-C-CcceEEEEecchhcc--CC-----Cc---ceeEEEecCccccccCCchhhhhhHHh
Confidence 489999999999888654321 1 245788888887652 32 45 898887532 11 112
Q ss_pred HHHHHHHhhcccCCeEEEE
Q 044253 80 RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~ 98 (139)
...+..+.++|++||+.+.
T Consensus 141 ~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 141 SNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred hHHHhhHHHHhccCCEEEE
Confidence 3456778899999999653
No 462
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=47.66 E-value=79 Score=25.20 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=42.6
Q ss_pred hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeC---ChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMES---RALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~---da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
+. +|++++.+++..+.+++ .|...-+..... +....+.++.. .. .+|+|+ |... .....++.+
T Consensus 227 G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~----g~---gvDvvl-d~~g-~~~~~~~~~ 293 (384)
T cd08265 227 GASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTK----GW---GADIQV-EAAG-APPATIPQM 293 (384)
T ss_pred CCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcC----CC---CCCEEE-ECCC-CcHHHHHHH
Confidence 44 68899888876655554 455211121111 23333333321 24 699777 5422 223456777
Q ss_pred hhcccCCeEEEEe
Q 044253 87 MTLFKVGGIVIYD 99 (139)
Q Consensus 87 ~~lL~~gG~ii~~ 99 (139)
.+.|+++|.++.-
T Consensus 294 ~~~l~~~G~~v~~ 306 (384)
T cd08265 294 EKSIAINGKIVYI 306 (384)
T ss_pred HHHHHcCCEEEEE
Confidence 8889999999853
No 463
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=47.48 E-value=1.1e+02 Score=24.82 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=45.4
Q ss_pred hcc-eeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----------
Q 044253 11 IYF-IVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---------- 78 (139)
Q Consensus 11 ~~~-v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---------- 78 (139)
+.+ ++++|.+++..+.|++ .|. +.+.... .+..+.+.++.. .. .+|+||--.....
T Consensus 209 Ga~~vi~~d~~~~r~~~a~~----~Ga-~~v~~~~~~~~~~~v~~~~~----~~---g~Dvvid~~G~~~~~~~~~~~~~ 276 (393)
T TIGR02819 209 GAAVVIVGDLNPARLAQARS----FGC-ETVDLSKDATLPEQIEQILG----EP---EVDCAVDCVGFEARGHGHDGKKE 276 (393)
T ss_pred CCceEEEeCCCHHHHHHHHH----cCC-eEEecCCcccHHHHHHHHcC----CC---CCcEEEECCCCcccccccccccc
Confidence 444 5667888888888765 454 2121111 233333333321 24 6898875433211
Q ss_pred -hHHHHHHHhhcccCCeEEEEeCC
Q 044253 79 -YRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 79 -~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
....++.+.+++++||.+++-.+
T Consensus 277 ~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 277 APATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred chHHHHHHHHHHhhCCCEEEEeee
Confidence 12467888899999999987544
No 464
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=47.03 E-value=1.3e+02 Score=23.78 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=42.5
Q ss_pred hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeC--ChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMES--RALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~--da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
+. +|++++.+++..+.+++ .|...-+..... +..+.+..+. .. .+|+||--... ...+....
T Consensus 208 G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~-----~~---g~d~vid~~g~---~~~~~~~~ 272 (365)
T cd08277 208 GASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT-----GG---GVDYSFECTGN---ADLMNEAL 272 (365)
T ss_pred CCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh-----CC---CCCEEEECCCC---hHHHHHHH
Confidence 44 79999999988888754 454211222111 1233333321 23 69988743321 23566677
Q ss_pred hcccCC-eEEEEeC
Q 044253 88 TLFKVG-GIVIYDN 100 (139)
Q Consensus 88 ~lL~~g-G~ii~~~ 100 (139)
+.++++ |.++.-.
T Consensus 273 ~~l~~~~G~~v~~g 286 (365)
T cd08277 273 ESTKLGWGVSVVVG 286 (365)
T ss_pred HhcccCCCEEEEEc
Confidence 888875 8887543
No 465
>PLN02335 anthranilate synthase
Probab=46.80 E-value=94 Score=23.21 Aligned_cols=60 Identities=12% Similarity=0.048 Sum_probs=42.6
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
.++|+....+|..||..........+.++..|. .++++..|.... ..+. .. .+|.|++-+
T Consensus 11 ~~~~~~~~~~ilviD~~dsft~~i~~~L~~~g~--~~~v~~~~~~~~-~~~~-----~~---~~d~iVisg 70 (222)
T PLN02335 11 VINSSKQNGPIIVIDNYDSFTYNLCQYMGELGC--HFEVYRNDELTV-EELK-----RK---NPRGVLISP 70 (222)
T ss_pred hhcccCccCcEEEEECCCCHHHHHHHHHHHCCC--cEEEEECCCCCH-HHHH-----hc---CCCEEEEcC
Confidence 356676777899999988888888888888886 477777664332 2221 23 688888865
No 466
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=46.77 E-value=1e+02 Score=21.82 Aligned_cols=53 Identities=13% Similarity=-0.017 Sum_probs=38.0
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
++..+|-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|...
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~--~v~-~~~~~~~~l~~~~-----~~---~~dlvild~~l 54 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGH--QVD-AAEDAKEADYYLN-----EH---LPDIAIVDLGL 54 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----hC---CCCEEEEECCC
Confidence 467889999999988888887775 233 4556666655442 35 79999999643
No 467
>PRK09483 response regulator; Provisional
Probab=46.36 E-value=1e+02 Score=21.64 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=41.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
.+|..+|-++......+..++.. ++ .+.....+..+.+..+. .. ++|+|++|.... ....+++.+.
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~~~~~~~-----~~---~~dlvi~d~~~~~~~g~~~~~~l~ 70 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGI--KVVGEACCGEDAVKWCR-----TN---AVDVVLMDMNMPGIGGLEATRKIL 70 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCC--EEEEEeCCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 36788899999988888888653 32 23224566666655443 35 799999997432 2234444443
No 468
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=46.32 E-value=19 Score=25.94 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=47.4
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHH-------cCC-C--------CcEEEEeCChHHHHHhhHHhhhcccCCCce
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKK-------VEV-D--------LKINLMESRALPALDQLLKDEKIHFFFENF 67 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~-------~g~-~--------~~i~~~~~da~~~l~~~~~~~~~~~~~~~f 67 (139)
|.-.+..+.+|+.+|.+++.++.+++.++. .|. . .++++. .|.. .+ . ..
T Consensus 15 A~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~----~~-------~---~a 79 (180)
T PF02737_consen 15 AALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLE----EA-------V---DA 79 (180)
T ss_dssp HHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGG----GG-------C---TE
T ss_pred HHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHH----HH-------h---hh
Confidence 344566789999999999999999887664 111 1 122211 1111 11 2 57
Q ss_pred eEEEEcCCC--cchHHHHHHHhhcccCCeEEEEeCC
Q 044253 68 DYAFVDAHK--DNYRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 68 D~If~D~~~--~~~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
|+|+=-.+- ..-..+|..+.+++.++.+|..+..
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 777754432 1235678888888888888876433
No 469
>PRK05650 short chain dehydrogenase; Provisional
Probab=46.28 E-value=1.1e+02 Score=22.87 Aligned_cols=59 Identities=12% Similarity=-0.000 Sum_probs=38.2
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcC
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
+..+.+|+.++++.+..+.+...+...+ .++.++.+|..+. +..+... .. ++|.++..+
T Consensus 21 ~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~---~~---~id~lI~~a 85 (270)
T PRK05650 21 AREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEK---WG---GIDVIVNNA 85 (270)
T ss_pred HHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHH---cC---CCCEEEECC
Confidence 4457789999999887777666665544 4578888887532 2222111 14 689998865
No 470
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=46.19 E-value=1.2e+02 Score=23.48 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=40.5
Q ss_pred hcc-eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IYF-IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~~-v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
+.+ |+.++.+++..+.+++ .|...-+.....+..+.+.++.. .. .+|+|+-.... ...+..+.+.
T Consensus 185 G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~----~~---~~d~vld~~g~---~~~~~~~~~~ 250 (340)
T TIGR00692 185 GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTD----GE---GVDVFLEMSGA---PKALEQGLQA 250 (340)
T ss_pred CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcC----CC---CCCEEEECCCC---HHHHHHHHHh
Confidence 444 7777776666655543 34321122223344343333321 24 68988764322 2346667788
Q ss_pred ccCCeEEEEe
Q 044253 90 FKVGGIVIYD 99 (139)
Q Consensus 90 L~~gG~ii~~ 99 (139)
|+++|.++.-
T Consensus 251 l~~~g~~v~~ 260 (340)
T TIGR00692 251 VTPGGRVSLL 260 (340)
T ss_pred hcCCCEEEEE
Confidence 8999998763
No 471
>PRK07102 short chain dehydrogenase; Provisional
Probab=45.84 E-value=56 Score=23.87 Aligned_cols=61 Identities=10% Similarity=-0.068 Sum_probs=38.1
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcC
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
+..+.+|+.++++++..+...+.+...+ ..+++++.+|..+.- ..+..+. .. .+|.++..+
T Consensus 22 ~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~--~~---~~d~vv~~a 84 (243)
T PRK07102 22 AAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSL--PA---LPDIVLIAV 84 (243)
T ss_pred HhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHH--hh---cCCEEEECC
Confidence 3456789999999887766555554433 247889988876531 2221110 13 579999754
No 472
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=45.73 E-value=40 Score=24.98 Aligned_cols=18 Identities=17% Similarity=-0.044 Sum_probs=13.3
Q ss_pred hhhhhhhcceeEEeCCcc
Q 044253 5 LESTFFIYFIVAIDVSRE 22 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~ 22 (139)
...+..+.+|..||.|+.
T Consensus 24 ~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 24 TALARLGKKVVLIDADIG 41 (261)
T ss_pred HHHHHcCCeEEEEECCCC
Confidence 334555778999999985
No 473
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=45.44 E-value=1.1e+02 Score=22.72 Aligned_cols=58 Identities=12% Similarity=-0.023 Sum_probs=37.6
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcC
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
+..+++|+.++++++.++.+.+.+...+ ++.++.+|+.+ .+...... .. +.|+++..+
T Consensus 21 ~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~---~g---~id~li~na 84 (259)
T PRK08340 21 LKKGARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWEL---LG---GIDALVWNA 84 (259)
T ss_pred HHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHh---cC---CCCEEEECC
Confidence 4457889999999888877766665433 47778888643 22222211 24 789998765
No 474
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=45.37 E-value=21 Score=25.60 Aligned_cols=9 Identities=33% Similarity=0.700 Sum_probs=8.1
Q ss_pred eeEEEEcCC
Q 044253 67 FDYAFVDAH 75 (139)
Q Consensus 67 fD~If~D~~ 75 (139)
||+|++||+
T Consensus 1 fdvI~~DPP 9 (176)
T PF05063_consen 1 FDVIYADPP 9 (176)
T ss_pred CCEEEEeCC
Confidence 899999985
No 475
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=45.28 E-value=1e+02 Score=21.50 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=41.6
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
+|..+|-++......+..++..|+. +. ...+..+.+..+. .. .+|+|++|..... ....++.+..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~--v~-~~~~~~~~~~~~~-----~~---~~dlvild~~l~~~~g~~~~~~i~~ 68 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFS--VD-WFTQGRQGKEALY-----SA---PYDAVILDLTLPGMDGRDILREWRE 68 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCE--EE-EeCCHHHHHHHHh-----hC---CCCEEEEECCCCCCCHHHHHHHHHh
Confidence 4678898988888888888876652 33 3456666655442 35 7999999974332 2334444443
No 476
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=45.28 E-value=1e+02 Score=21.42 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=21.9
Q ss_pred ceeEEEEcCCCcc-----hHHHHHHHhhcccCCeEEEEeCC
Q 044253 66 NFDYAFVDAHKDN-----YRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 66 ~fD~If~D~~~~~-----~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.+|+|++|.+... ....+..+.+...+.+.+++-+.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~ 122 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDA 122 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 7999999985432 12223344455668887766544
No 477
>PRK06172 short chain dehydrogenase; Provisional
Probab=45.27 E-value=1.1e+02 Score=22.29 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=39.1
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcC
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
+..+++|+.++.+++.++.+.+.+...+ .++.++.+|+.+. +...... .. +.|.|+..+
T Consensus 28 ~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~---~g---~id~li~~a 92 (253)
T PRK06172 28 AREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA---YG---RLDYAFNNA 92 (253)
T ss_pred HHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH---hC---CCCEEEECC
Confidence 3346789999999988777777766554 4688888887532 2222111 23 689998765
No 478
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=45.25 E-value=98 Score=21.52 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH-HHHHHhhcccCCeEEE
Q 044253 24 SETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN-YRETLMTLFKVGGIVI 97 (139)
Q Consensus 24 ~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~-~~~~~~~lL~~gG~ii 97 (139)
+...++.+++.|. .+.++.|+..+.+..+..+ - +.+.|+++.....+.. .-+.+.+.|+..|+-+
T Consensus 55 L~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~----~---~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~ 120 (165)
T PF00875_consen 55 LADLQESLRKLGI--PLLVLRGDPEEVLPELAKE----Y---GATAVYFNEEYTPYERRRDERVRKALKKHGIKV 120 (165)
T ss_dssp HHHHHHHHHHTTS---EEEEESSHHHHHHHHHHH----H---TESEEEEE---SHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCc--ceEEEecchHHHHHHHHHh----c---CcCeeEeccccCHHHHHHHHHHHHHHHhcceEE
Confidence 3444556677775 5899999999999887653 4 6899999876544332 2334556666555543
No 479
>PLN02256 arogenate dehydrogenase
Probab=45.01 E-value=1.1e+02 Score=24.00 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=15.9
Q ss_pred ceeEEEEcCCCcchHHHHHHH-hhcccCCeE
Q 044253 66 NFDYAFVDAHKDNYRNYRETL-MTLFKVGGI 95 (139)
Q Consensus 66 ~fD~If~D~~~~~~~~~~~~~-~~lL~~gG~ 95 (139)
..|+|++-.+......+++.+ ...++++.+
T Consensus 92 ~aDvVilavp~~~~~~vl~~l~~~~l~~~~i 122 (304)
T PLN02256 92 HPDVVLLCTSILSTEAVLRSLPLQRLKRSTL 122 (304)
T ss_pred CCCEEEEecCHHHHHHHHHhhhhhccCCCCE
Confidence 467777765443445555554 344555543
No 480
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=44.73 E-value=27 Score=24.12 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=26.1
Q ss_pred ceeEEEEcCCCcchHHHHHHHhhcccCCeEEEEe
Q 044253 66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
+||+|++-..........+.+.+.++.||.+++.
T Consensus 53 ~y~~vi~P~~~~~~~~~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 53 GYKLVVLPDLYLLSDATAAALRAYVENGGTLVAG 86 (154)
T ss_pred cCCEEEECchhcCCHHHHHHHHHHHHCCCEEEEe
Confidence 6999999664444456677888899999998873
No 481
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=44.68 E-value=22 Score=27.84 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=23.4
Q ss_pred ceeEEEEcCCCcchHHHHHHHhhcccCCeEEE
Q 044253 66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii 97 (139)
.+|+||+-.........++.+.+.++++.+++
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii 104 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVV 104 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEE
Confidence 68999987654455667777778888877665
No 482
>PRK06194 hypothetical protein; Provisional
Probab=44.68 E-value=1e+02 Score=23.08 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=38.5
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhh-hcccCCCceeEEEEcCC
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDE-KIHFFFENFDYAFVDAH 75 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~-~~~~~~~~fD~If~D~~ 75 (139)
.+..+++|+.++.+.+.++...+.+...+ .++.++.+|+.+. +..+.... .... +.|+|+..+.
T Consensus 26 l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g---~id~vi~~Ag 92 (287)
T PRK06194 26 GAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG---AVHLLFNNAG 92 (287)
T ss_pred HHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC---CCCEEEECCC
Confidence 34457889999999877766655554433 3578888887542 22221110 0023 6899998653
No 483
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=44.26 E-value=1.3e+02 Score=23.58 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=42.4
Q ss_pred hc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 11 IY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 11 ~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
+. +|++++.+++..+.+++ .|...-+.... .+..+.+.++. .. .+|+++--... ...+..+.
T Consensus 211 G~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~---~~d~vid~~G~---~~~~~~~~ 275 (369)
T cd08301 211 GASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT-----GG---GVDYSFECTGN---IDAMISAF 275 (369)
T ss_pred CCCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh-----CC---CCCEEEECCCC---hHHHHHHH
Confidence 44 79999999998887754 45421122211 11223333332 24 68876643222 33455667
Q ss_pred hcccCC-eEEEEeCC
Q 044253 88 TLFKVG-GIVIYDNT 101 (139)
Q Consensus 88 ~lL~~g-G~ii~~~~ 101 (139)
..+++| |.++.-..
T Consensus 276 ~~~~~~~g~~v~~g~ 290 (369)
T cd08301 276 ECVHDGWGVTVLLGV 290 (369)
T ss_pred HHhhcCCCEEEEECc
Confidence 888896 88876443
No 484
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=44.23 E-value=1e+02 Score=22.57 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=37.0
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChH--------HHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRAL--------PALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~--------~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
+..+++|++++++++..+...+.+...+. .++.++.+|+. +....+.+. .. +.|.|+..+
T Consensus 33 ~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~---~id~vi~~A 100 (247)
T PRK08945 33 ARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIEEQ---FG---RLDGVLHNA 100 (247)
T ss_pred HHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHHHH---hC---CCCEEEECC
Confidence 34467999999998877766666665543 35667766653 122222211 24 789998764
No 485
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=43.79 E-value=91 Score=26.54 Aligned_cols=73 Identities=10% Similarity=-0.065 Sum_probs=45.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCcchH-HHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKDNYR-NYRETL 86 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~~~~-~~~~~~ 86 (139)
.+..++.+|.|++.++.+++ .| ..+++||+.+. +++. + -+ +.|.+++..+.+.-. .....+
T Consensus 439 ~g~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a----~-i~---~a~~viv~~~~~~~~~~iv~~~ 502 (558)
T PRK10669 439 AGIPLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLA----H-LD---CARWLLLTIPNGYEAGEIVASA 502 (558)
T ss_pred CCCCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhc----C-cc---ccCEEEEEcCChHHHHHHHHHH
Confidence 35679999999998888864 23 67899998864 2221 1 24 789887754322222 233333
Q ss_pred hhcccCCeEEEEe
Q 044253 87 MTLFKVGGIVIYD 99 (139)
Q Consensus 87 ~~lL~~gG~ii~~ 99 (139)
+...++..+++.
T Consensus 503 -~~~~~~~~iiar 514 (558)
T PRK10669 503 -REKRPDIEIIAR 514 (558)
T ss_pred -HHHCCCCeEEEE
Confidence 445677777753
No 486
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=43.30 E-value=1.7e+02 Score=24.39 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=46.6
Q ss_pred hhhhcceeEEeCCccHHHHHHH------------HHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 8 TFFIYFIVAIDVSRESSETGLP------------IIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~------------n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
|..+..|+++|++++-++..++ .++++....|+++- .|..+.+ . ..|++|+-.+
T Consensus 20 A~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~----------~---~adv~fIavg 85 (414)
T COG1004 20 AELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV----------K---DADVVFIAVG 85 (414)
T ss_pred HHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH----------h---cCCEEEEEcC
Confidence 4456789999999999998764 23333333344443 3444432 2 4678887431
Q ss_pred --C--c------chHHHHHHHhhcccCCeEEEEeCCC
Q 044253 76 --K--D------NYRNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 76 --~--~------~~~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
. . ......+.+.+.++...+++...+.
T Consensus 86 TP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTV 122 (414)
T COG1004 86 TPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTV 122 (414)
T ss_pred CCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCC
Confidence 1 1 1233455566777777677664433
No 487
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=43.22 E-value=1.3e+02 Score=23.20 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=42.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++..+++..+.+++ .|...-+.....+..+.+.+... .. .+|+|+-.... ...+..+.+.|
T Consensus 183 g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~----~~---~vd~vld~~g~---~~~~~~~~~~l 248 (337)
T cd08261 183 GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTD----GE---GADVVIDATGN---PASMEEAVELV 248 (337)
T ss_pred CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhC----CC---CCCEEEECCCC---HHHHHHHHHHH
Confidence 5678888777777766643 34322223333333343433321 24 69998765422 23456677888
Q ss_pred cCCeEEEE
Q 044253 91 KVGGIVIY 98 (139)
Q Consensus 91 ~~gG~ii~ 98 (139)
+++|.++.
T Consensus 249 ~~~G~~i~ 256 (337)
T cd08261 249 AHGGRVVL 256 (337)
T ss_pred hcCCEEEE
Confidence 89999874
No 488
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=43.18 E-value=25 Score=26.61 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=19.1
Q ss_pred HHHHHHHhhcccCCeEEEEe-CCCCCcc
Q 044253 80 RNYRETLMTLFKVGGIVIYD-NTLWGGT 106 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~-~~~~~~~ 106 (139)
.+....+.+.|||||++++. +.-..|.
T Consensus 146 ~~vna~vf~~LKPGGv~~V~dH~a~pG~ 173 (238)
T COG4798 146 AKVNAAVFKALKPGGVYLVEDHRADPGS 173 (238)
T ss_pred HHHHHHHHHhcCCCcEEEEEeccccCCC
Confidence 45667788999999998764 4444443
No 489
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=42.76 E-value=1.2e+02 Score=22.51 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=39.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|++++.+++..+.+++ .|...-+.....+....+..... .. .+|+|+--... .....+.+.|
T Consensus 161 g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~~---~~d~vl~~~~~----~~~~~~~~~l 225 (320)
T cd05286 161 GATVIGTVSSEEKAELARA----AGADHVINYRDEDFVERVREITG----GR---GVDVVYDGVGK----DTFEGSLDSL 225 (320)
T ss_pred CCEEEEEcCCHHHHHHHHH----CCCCEEEeCCchhHHHHHHHHcC----CC---CeeEEEECCCc----HhHHHHHHhh
Confidence 5567888777777666543 45421111111122222222211 24 69998843321 2455677888
Q ss_pred cCCeEEEE
Q 044253 91 KVGGIVIY 98 (139)
Q Consensus 91 ~~gG~ii~ 98 (139)
+++|.++.
T Consensus 226 ~~~g~~v~ 233 (320)
T cd05286 226 RPRGTLVS 233 (320)
T ss_pred ccCcEEEE
Confidence 99999874
No 490
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=42.73 E-value=1.3e+02 Score=26.70 Aligned_cols=21 Identities=10% Similarity=-0.213 Sum_probs=15.2
Q ss_pred chhhhhhhcceeEEeCCccHH
Q 044253 4 NLESTFFIYFIVAIDVSRESS 24 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~ 24 (139)
|...|..+.+|..||.|...-
T Consensus 568 A~~lA~~g~rvLlID~D~~~~ 588 (754)
T TIGR01005 568 AALIASGGKRALLIDADGRKA 588 (754)
T ss_pred HHHHHhCCCeEEEEeCCCCch
Confidence 344555678999999997743
No 491
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=42.11 E-value=1.2e+02 Score=21.22 Aligned_cols=53 Identities=11% Similarity=-0.008 Sum_probs=37.5
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
+|..+|-++......+..+...|+. +. ...+..+.+..+. .. .+|+|++|...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~--v~-~~~~~~~~~~~~~-----~~---~~d~illd~~~ 54 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYA--CD-CASTAREAEALLE-----SG---HYSLVVLDLGL 54 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCE--EE-EeCCHHHHHHHHH-----hC---CCCEEEEECCC
Confidence 4778899999999898888877752 32 3456666655442 34 79999999754
No 492
>PRK13558 bacterio-opsin activator; Provisional
Probab=42.04 E-value=2.2e+02 Score=24.40 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=42.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~ 87 (139)
.++..||-++......+..+...|+ .+ ....+..+.+..+. .. .+|+|++|..... -...++.+.
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~--~v-~~~~~~~~al~~~~-----~~---~~Dlvl~d~~lp~~~g~~~l~~l~ 74 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRL--DV-TQIRDFVAARDRVE-----AG---EIDCVVADHEPDGFDGLALLEAVR 74 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCc--ce-EeeCCHHHHHHHhh-----cc---CCCEEEEeccCCCCcHHHHHHHHH
Confidence 4789999999998888877766554 23 34556666665442 35 7999999974332 233444443
No 493
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=41.85 E-value=86 Score=27.13 Aligned_cols=73 Identities=5% Similarity=-0.139 Sum_probs=45.8
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
.+.+++.+|.|++.++.+++ .| ..++.||+.+. +++. + -+ +.|.+++-.+...-....-...
T Consensus 422 ~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~a----g-i~---~A~~vv~~~~d~~~n~~i~~~~ 485 (601)
T PRK03659 422 NKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAA----G-AE---KAEAIVITCNEPEDTMKIVELC 485 (601)
T ss_pred CCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhc----C-Cc---cCCEEEEEeCCHHHHHHHHHHH
Confidence 35689999999999988864 33 57888998764 3221 1 24 7888887654322221222233
Q ss_pred hcccCCeEEEE
Q 044253 88 TLFKVGGIVIY 98 (139)
Q Consensus 88 ~lL~~gG~ii~ 98 (139)
+.+.|...+++
T Consensus 486 r~~~p~~~Iia 496 (601)
T PRK03659 486 QQHFPHLHILA 496 (601)
T ss_pred HHHCCCCeEEE
Confidence 55667777765
No 494
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=41.64 E-value=1.3e+02 Score=21.61 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=46.5
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhcc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTLF 90 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~lL 90 (139)
++..+|-++...+..+..++..|+. +. ...+..+.+..+. .. .+|+|++|..... -...++.+...
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~--v~-~~~~~~~~l~~~~-----~~---~~dlvild~~l~~~~g~~~~~~ir~~- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDID--VT-VEPRGDRAEATIL-----RE---QPDLVLLDIMLPGKDGMTICRDLRPK- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCE--EE-EeCCHHHHHHHHh-----hC---CCCEEEEeCCCCCCCHHHHHHHHHhc-
Confidence 6788999999999999988877752 33 3356666655442 35 7999999974432 23344444432
Q ss_pred cCCeEEEE
Q 044253 91 KVGGIVIY 98 (139)
Q Consensus 91 ~~gG~ii~ 98 (139)
.+..++++
T Consensus 71 ~~~pii~l 78 (240)
T PRK10701 71 WQGPIVLL 78 (240)
T ss_pred CCCCEEEE
Confidence 23344444
No 495
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=41.30 E-value=14 Score=24.31 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCcchHHHHHHHhhcccCCeEEEEeC
Q 044253 66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
+||+||=-.. .....++..+.++| +||.++.-.
T Consensus 19 ~~D~ViD~~g-~~~~~~~~~~~~~l-~~G~~v~i~ 51 (127)
T PF13602_consen 19 GVDVVIDTVG-QTGESLLDASRKLL-PGGRVVSIG 51 (127)
T ss_dssp -EEEEEESS--CCHHHCGGGCCCTE-EEEEEEEE-
T ss_pred CceEEEECCC-CccHHHHHHHHHHC-CCCEEEEEC
Confidence 8998875544 33444557777888 999987543
No 496
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=41.15 E-value=1.3e+02 Score=22.06 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=41.7
Q ss_pred hhhhcceeEEeCCccHHHHHHHHH-HHc---CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHH
Q 044253 8 TFFIYFIVAIDVSRESSETGLPII-KKV---EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYR 83 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~-~~~---g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~ 83 (139)
+..+.+|+.++++++..+...+.. ... |+. .++...+..+.+ . ..|+||+-.+.......+
T Consensus 21 ~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~--~~~~~~~~~ea~----------~---~aDvVilavp~~~~~~~l 85 (219)
T TIGR01915 21 AKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSD--IKVTGADNAEAA----------K---RADVVILAVPWDHVLKTL 85 (219)
T ss_pred HhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCC--ceEEEeChHHHH----------h---cCCEEEEECCHHHHHHHH
Confidence 334568899999988776554422 222 221 122222332221 3 579999987655666666
Q ss_pred HHHhhcccCCeEEEEe
Q 044253 84 ETLMTLFKVGGIVIYD 99 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~ 99 (139)
+.+...+. + .++++
T Consensus 86 ~~l~~~l~-~-~vvI~ 99 (219)
T TIGR01915 86 ESLRDELS-G-KLVIS 99 (219)
T ss_pred HHHHHhcc-C-CEEEE
Confidence 66656554 3 44443
No 497
>TIGR00363 lipoprotein, YaeC family. This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family.
Probab=41.04 E-value=1.2e+02 Score=23.40 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=42.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCC-------------------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEE
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEV-------------------DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFV 72 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~-------------------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~ 72 (139)
..-+++-.++.....+-..++..|+ ...++++..+.......+. .. ..|++++
T Consensus 117 G~~IAip~d~~n~~raL~~L~~aGLi~l~~~~~~~~t~~DI~~n~~~v~~vel~~~~~~~al~-----~g---~vDaa~v 188 (258)
T TIGR00363 117 GAKVAVPNDPTNLGRALLLLQKQGLIKLKDGNGLLPTVLDIVENPKKLNITELETSQLPRALD-----DP---KVDLAVI 188 (258)
T ss_pred CCEEEEeCCcchHHHHHHHHHHcCCceecCCCCCcCChhhhhcCCCCCEEEEcCHHHHHHHhh-----cc---cccEEEE
Confidence 3567788888888888788999888 5669999998888765553 34 6999988
Q ss_pred cCC
Q 044253 73 DAH 75 (139)
Q Consensus 73 D~~ 75 (139)
..+
T Consensus 189 ~~~ 191 (258)
T TIGR00363 189 NTT 191 (258)
T ss_pred ChH
Confidence 764
No 498
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=40.97 E-value=1.9e+02 Score=23.31 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=40.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
..+|..||-++......+..++..|+ .+ ....+..+.+..+. .. .||+|++|...
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~l~-----~~---~~DlvilD~~m 59 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGY--NV-ALANSGRQALEQVR-----EQ---VFDLVLCDVRM 59 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCC--eE-EEeCCHHHHHHHHh-----cC---CCCEEEEeCCC
Confidence 35789999999999999999988775 23 23456766665543 35 79999999754
No 499
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=40.84 E-value=53 Score=23.17 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=24.6
Q ss_pred ceeEEEEcCCCcchHHHHHHHhhcccCCeEEEEeCCCCCc
Q 044253 66 NFDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 66 ~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~~ 105 (139)
.+|++++-- ...+....+.|++||+++++......
T Consensus 57 ~~Dilv~l~-----~~~~~~~~~~l~~~g~vi~ns~~~~~ 91 (173)
T PF01558_consen 57 EADILVALD-----PEALERHLKGLKPGGVVIINSSLVKP 91 (173)
T ss_dssp SESEEEESS-----HHHHHHCGTTCETTEEEEEETTT-CH
T ss_pred CCCEEEEcC-----HHHHHHHhcCcCcCeEEEEECCCCCc
Confidence 788887632 22344667889999999999876654
No 500
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=40.80 E-value=74 Score=24.85 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=13.9
Q ss_pred chhhhhhhcce--eEEeCCccHHHHHH
Q 044253 4 NLESTFFIYFI--VAIDVSRESSETGL 28 (139)
Q Consensus 4 ~~~~~~~~~~v--~~vD~s~~~~~~Ar 28 (139)
+......+..+ ++.|.+...+..+.
T Consensus 19 a~~l~~~g~~v~i~g~d~~~~~~~~a~ 45 (279)
T COG0287 19 ARALKEAGLVVRIIGRDRSAATLKAAL 45 (279)
T ss_pred HHHHHHcCCeEEEEeecCcHHHHHHHh
Confidence 44444455544 66666666666554
Done!