Query 044253
Match_columns 139
No_of_seqs 144 out of 1155
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 22:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dr5_A Putative O-methyltransf 99.8 1.3E-20 4.4E-25 140.2 10.1 116 11-139 81-197 (221)
2 3c3y_A Pfomt, O-methyltransfer 99.8 2.8E-19 9.6E-24 133.8 12.6 126 11-139 95-220 (237)
3 1sui_A Caffeoyl-COA O-methyltr 99.8 4.9E-19 1.7E-23 133.5 13.0 126 11-139 104-230 (247)
4 3r3h_A O-methyltransferase, SA 99.8 1.5E-19 5E-24 136.0 9.4 120 11-139 85-204 (242)
5 3ntv_A MW1564 protein; rossman 99.8 5.7E-19 2E-23 131.4 11.3 121 10-139 94-215 (232)
6 3tfw_A Putative O-methyltransf 99.8 1.5E-18 5.2E-23 130.5 11.8 117 11-139 88-204 (248)
7 3duw_A OMT, O-methyltransferas 99.8 4.5E-18 1.5E-22 125.0 13.0 118 11-138 83-200 (223)
8 3tr6_A O-methyltransferase; ce 99.8 3.5E-18 1.2E-22 125.6 12.2 120 11-139 89-208 (225)
9 3cbg_A O-methyltransferase; cy 99.8 3.5E-18 1.2E-22 127.3 11.7 117 11-138 97-215 (232)
10 2avd_A Catechol-O-methyltransf 99.8 8.1E-18 2.8E-22 123.9 12.7 119 11-138 94-212 (229)
11 2hnk_A SAM-dependent O-methylt 99.7 5.8E-16 2E-20 115.2 12.4 120 11-138 85-214 (239)
12 3c3p_A Methyltransferase; NP_9 99.7 2E-16 6.7E-21 115.5 7.8 112 11-138 81-192 (210)
13 2gpy_A O-methyltransferase; st 99.6 1.4E-15 4.8E-20 112.5 6.8 120 11-138 78-197 (233)
14 3u81_A Catechol O-methyltransf 99.6 8.3E-15 2.8E-19 107.8 10.0 104 11-138 83-189 (221)
15 3cvo_A Methyltransferase-like 99.4 3.2E-13 1.1E-17 99.4 7.1 89 11-104 51-158 (202)
16 2b78_A Hypothetical protein SM 99.3 9E-12 3.1E-16 99.3 10.7 93 3-101 226-332 (385)
17 3p9n_A Possible methyltransfer 99.3 1.2E-11 4.1E-16 88.5 10.0 85 11-104 67-157 (189)
18 3k6r_A Putative transferase PH 99.3 2.4E-12 8E-17 99.0 5.8 87 2-100 138-225 (278)
19 2wk1_A NOVP; transferase, O-me 99.3 1.9E-11 6.4E-16 94.2 10.5 89 23-133 173-263 (282)
20 2igt_A SAM dependent methyltra 99.3 1.3E-11 4.3E-16 96.8 9.6 94 3-102 167-274 (332)
21 3v97_A Ribosomal RNA large sub 99.3 1.8E-11 6.3E-16 104.3 9.8 91 3-102 553-659 (703)
22 2as0_A Hypothetical protein PH 99.3 2.3E-11 7.7E-16 97.0 9.5 92 3-100 231-335 (396)
23 1wxx_A TT1595, hypothetical pr 99.3 2.7E-11 9.1E-16 96.3 9.7 91 3-100 223-325 (382)
24 3c0k_A UPF0064 protein YCCW; P 99.2 2.8E-11 9.6E-16 96.5 9.7 92 3-100 234-339 (396)
25 3axs_A Probable N(2),N(2)-dime 99.2 2.6E-11 8.9E-16 97.2 8.4 88 3-100 66-158 (392)
26 2esr_A Methyltransferase; stru 99.2 4E-11 1.4E-15 84.6 8.5 89 6-103 48-141 (177)
27 2ift_A Putative methylase HI07 99.2 2.6E-11 9E-16 88.1 7.7 93 4-104 68-167 (201)
28 4dmg_A Putative uncharacterize 99.2 3.7E-11 1.3E-15 96.2 8.7 86 3-99 228-325 (393)
29 2fhp_A Methylase, putative; al 99.2 8.3E-11 2.8E-15 83.2 9.6 85 12-102 68-156 (187)
30 3fpf_A Mtnas, putative unchara 99.2 3.5E-11 1.2E-15 93.2 8.0 79 10-101 145-223 (298)
31 2fpo_A Methylase YHHF; structu 99.2 5.9E-11 2E-15 86.3 8.4 87 5-101 70-161 (202)
32 1ws6_A Methyltransferase; stru 99.2 1.2E-10 4.2E-15 81.1 8.8 91 5-103 57-150 (171)
33 3njr_A Precorrin-6Y methylase; 99.2 5.7E-11 2E-15 86.6 7.1 86 5-102 71-156 (204)
34 2frn_A Hypothetical protein PH 99.2 3.2E-11 1.1E-15 92.0 5.4 89 2-102 138-227 (278)
35 3lpm_A Putative methyltransfer 99.1 7E-11 2.4E-15 88.8 6.4 78 13-98 74-174 (259)
36 3e05_A Precorrin-6Y C5,15-meth 99.1 7.7E-11 2.6E-15 85.1 6.3 79 12-101 65-143 (204)
37 2o07_A Spermidine synthase; st 99.1 1.3E-10 4.5E-15 90.0 7.3 103 11-135 119-232 (304)
38 3mti_A RRNA methylase; SAM-dep 99.1 1.5E-10 5.2E-15 82.2 5.3 85 5-99 38-134 (185)
39 1l3i_A Precorrin-6Y methyltran 99.1 8.3E-10 2.8E-14 77.8 9.1 83 8-100 52-134 (192)
40 2b2c_A Spermidine synthase; be 99.1 2.7E-10 9.2E-15 88.7 6.9 81 11-100 132-222 (314)
41 3a27_A TYW2, uncharacterized p 99.1 2.8E-10 9.4E-15 86.6 6.6 87 2-101 132-220 (272)
42 1xdz_A Methyltransferase GIDB; 99.0 7.1E-10 2.4E-14 82.2 8.4 82 9-99 92-173 (240)
43 1xj5_A Spermidine synthase 1; 99.0 5.7E-10 2E-14 87.6 8.1 87 11-105 144-241 (334)
44 3evz_A Methyltransferase; NYSG 99.0 3E-10 1E-14 83.2 5.7 84 5-99 72-178 (230)
45 1iy9_A Spermidine synthase; ro 99.0 6.1E-10 2.1E-14 85.0 7.5 81 11-100 99-189 (275)
46 2yx1_A Hypothetical protein MJ 99.0 3.5E-10 1.2E-14 88.5 6.1 86 2-102 208-293 (336)
47 3hm2_A Precorrin-6Y C5,15-meth 99.0 4.1E-10 1.4E-14 79.0 5.8 81 11-102 49-129 (178)
48 2dul_A N(2),N(2)-dimethylguano 99.0 1.1E-09 3.9E-14 87.2 8.6 86 4-100 62-164 (378)
49 3gjy_A Spermidine synthase; AP 99.0 8E-10 2.7E-14 86.3 7.4 82 10-100 112-200 (317)
50 3g89_A Ribosomal RNA small sub 99.0 1.6E-09 5.5E-14 81.4 8.7 80 10-98 103-182 (249)
51 3ajd_A Putative methyltransfer 99.0 3.5E-09 1.2E-13 80.4 10.5 85 12-103 109-214 (274)
52 1inl_A Spermidine synthase; be 99.0 8.4E-10 2.9E-14 85.0 6.9 80 11-99 114-204 (296)
53 3eey_A Putative rRNA methylase 99.0 5.6E-10 1.9E-14 79.9 5.6 80 12-100 48-139 (197)
54 1uir_A Polyamine aminopropyltr 99.0 1.9E-09 6.5E-14 83.6 8.7 80 11-99 101-194 (314)
55 2ozv_A Hypothetical protein AT 99.0 4.8E-10 1.6E-14 84.6 5.1 85 11-98 60-168 (260)
56 3orh_A Guanidinoacetate N-meth 99.0 7.4E-10 2.5E-14 82.4 6.0 86 11-106 83-176 (236)
57 1nv8_A HEMK protein; class I a 99.0 1.5E-09 5.3E-14 83.1 7.9 86 5-102 139-251 (284)
58 2nxc_A L11 mtase, ribosomal pr 98.9 1.9E-09 6.3E-14 81.1 7.6 85 4-101 135-219 (254)
59 3tma_A Methyltransferase; thum 98.9 2.2E-09 7.5E-14 84.1 7.9 85 4-99 218-316 (354)
60 3bt7_A TRNA (uracil-5-)-methyl 98.9 1.3E-09 4.6E-14 86.1 6.6 90 3-99 227-325 (369)
61 3m4x_A NOL1/NOP2/SUN family pr 98.9 5.2E-09 1.8E-13 85.3 9.8 82 12-103 131-237 (456)
62 3hem_A Cyclopropane-fatty-acyl 98.9 3E-09 1E-13 81.2 7.9 81 11-104 95-187 (302)
63 1dus_A MJ0882; hypothetical pr 98.9 1.6E-09 5.5E-14 76.4 5.8 83 8-101 71-158 (194)
64 2pt6_A Spermidine synthase; tr 98.9 1.7E-09 5.8E-14 84.3 6.3 81 11-100 140-230 (321)
65 3mb5_A SAM-dependent methyltra 98.9 9.2E-10 3.2E-14 81.8 4.6 76 11-99 118-193 (255)
66 1mjf_A Spermidine synthase; sp 98.9 3.5E-09 1.2E-13 80.8 7.9 78 11-99 98-192 (281)
67 4htf_A S-adenosylmethionine-de 98.9 2.1E-09 7.1E-14 81.2 6.5 87 6-101 85-174 (285)
68 2qfm_A Spermine synthase; sper 98.9 4.7E-09 1.6E-13 83.3 8.6 83 12-100 212-314 (364)
69 2b3t_A Protein methyltransfera 98.9 2.5E-09 8.6E-14 80.9 6.5 78 11-100 133-238 (276)
70 3adn_A Spermidine synthase; am 98.9 1E-09 3.6E-14 84.6 4.4 80 11-99 107-197 (294)
71 3gdh_A Trimethylguanosine synt 98.9 2E-10 7E-15 84.8 0.3 85 4-99 93-180 (241)
72 3grz_A L11 mtase, ribosomal pr 98.9 1.2E-09 4E-14 78.8 4.3 76 12-100 84-159 (205)
73 3kr9_A SAM-dependent methyltra 98.9 1.1E-09 3.9E-14 81.6 4.3 88 4-101 30-120 (225)
74 1yzh_A TRNA (guanine-N(7)-)-me 98.9 2.6E-09 8.8E-14 77.8 6.0 80 11-99 65-155 (214)
75 3m6w_A RRNA methylase; rRNA me 98.9 8.7E-09 3E-13 84.2 9.6 80 12-102 127-231 (464)
76 3dxy_A TRNA (guanine-N(7)-)-me 98.9 7.5E-09 2.6E-13 76.3 8.3 81 11-99 58-149 (218)
77 2qm3_A Predicted methyltransfe 98.9 1.9E-09 6.6E-14 85.3 5.4 87 4-99 186-277 (373)
78 2fca_A TRNA (guanine-N(7)-)-me 98.9 7.7E-09 2.6E-13 75.6 8.1 80 11-99 62-152 (213)
79 3lbf_A Protein-L-isoaspartate 98.9 2.5E-09 8.7E-14 77.2 5.3 80 6-99 94-173 (210)
80 3f4k_A Putative methyltransfer 98.8 3.2E-09 1.1E-13 78.7 5.7 82 12-103 70-153 (257)
81 4gek_A TRNA (CMO5U34)-methyltr 98.8 3.4E-09 1.2E-13 80.3 5.9 79 11-101 96-179 (261)
82 2bm8_A Cephalosporin hydroxyla 98.8 9.3E-10 3.2E-14 82.0 2.5 77 11-101 109-188 (236)
83 3lec_A NADB-rossmann superfami 98.8 2E-09 7E-14 80.5 4.2 86 5-100 37-125 (230)
84 3dlc_A Putative S-adenosyl-L-m 98.8 4.6E-09 1.6E-13 75.5 5.4 84 11-104 66-152 (219)
85 3dmg_A Probable ribosomal RNA 98.8 5.4E-09 1.9E-13 83.3 6.3 85 3-99 247-339 (381)
86 2i7c_A Spermidine synthase; tr 98.8 9.9E-09 3.4E-13 78.4 7.2 81 11-100 102-192 (283)
87 1jsx_A Glucose-inhibited divis 98.8 8.8E-09 3E-13 74.1 6.4 77 11-100 89-165 (207)
88 1zx0_A Guanidinoacetate N-meth 98.8 6.6E-09 2.3E-13 76.6 5.9 81 12-102 84-172 (236)
89 1o54_A SAM-dependent O-methylt 98.8 3.5E-09 1.2E-13 80.0 4.5 77 11-100 137-213 (277)
90 4dcm_A Ribosomal RNA large sub 98.8 4.5E-09 1.6E-13 83.5 5.2 85 4-99 237-333 (375)
91 3gnl_A Uncharacterized protein 98.8 3.5E-09 1.2E-13 79.9 4.3 86 4-99 36-124 (244)
92 3kkz_A Uncharacterized protein 98.8 4.9E-09 1.7E-13 78.5 5.1 83 11-103 69-153 (267)
93 1nkv_A Hypothetical protein YJ 98.8 5.2E-09 1.8E-13 77.5 5.2 82 11-103 59-143 (256)
94 2fk8_A Methoxy mycolic acid sy 98.8 1.3E-08 4.5E-13 78.1 7.5 80 11-103 113-197 (318)
95 2yxd_A Probable cobalt-precorr 98.8 2.8E-08 9.7E-13 69.4 8.7 80 7-101 53-132 (183)
96 4dzr_A Protein-(glutamine-N5) 98.8 3E-09 1E-13 76.3 3.6 81 11-99 54-164 (215)
97 2frx_A Hypothetical protein YE 98.8 1.5E-08 5.2E-13 82.9 8.0 82 12-103 143-249 (479)
98 1ixk_A Methyltransferase; open 98.8 1.5E-08 5.1E-13 78.6 7.5 81 11-102 143-248 (315)
99 2yvl_A TRMI protein, hypotheti 98.8 5.5E-09 1.9E-13 77.0 4.8 82 7-100 109-190 (248)
100 3m70_A Tellurite resistance pr 98.7 1.6E-08 5.6E-13 76.3 6.7 83 4-99 135-222 (286)
101 3vc1_A Geranyl diphosphate 2-C 98.7 8.8E-09 3E-13 79.1 5.2 87 6-102 134-223 (312)
102 1o9g_A RRNA methyltransferase; 98.7 2.1E-09 7E-14 80.1 1.4 83 11-99 77-213 (250)
103 3bwc_A Spermidine synthase; SA 98.7 2.3E-08 7.8E-13 77.2 7.3 81 11-99 119-209 (304)
104 3lcc_A Putative methyl chlorid 98.7 4.7E-09 1.6E-13 77.1 3.2 84 7-101 84-172 (235)
105 1kpg_A CFA synthase;, cyclopro 98.7 3.2E-08 1.1E-12 74.6 7.7 81 10-103 86-171 (287)
106 3r0q_C Probable protein argini 98.7 1.9E-08 6.6E-13 79.7 6.7 87 5-103 79-172 (376)
107 3ocj_A Putative exported prote 98.7 1.2E-08 3.9E-13 78.2 5.1 83 10-103 142-230 (305)
108 2jjq_A Uncharacterized RNA met 98.7 1.5E-08 5.1E-13 81.8 5.9 82 3-99 304-386 (425)
109 1uwv_A 23S rRNA (uracil-5-)-me 98.7 2.1E-08 7.1E-13 80.9 6.6 89 3-99 300-388 (433)
110 2pwy_A TRNA (adenine-N(1)-)-me 98.7 1.4E-08 4.8E-13 75.2 4.8 77 11-100 121-198 (258)
111 3bus_A REBM, methyltransferase 98.7 2E-08 6.9E-13 75.0 5.6 83 11-103 84-169 (273)
112 3g07_A 7SK snRNA methylphospha 98.7 1.8E-08 6.2E-13 76.9 5.3 90 11-105 70-225 (292)
113 1g8a_A Fibrillarin-like PRE-rR 98.7 2.3E-08 8E-13 73.0 5.6 76 12-99 99-177 (227)
114 1dl5_A Protein-L-isoaspartate 98.7 2.3E-08 8E-13 77.2 5.8 74 13-100 102-175 (317)
115 2vdv_E TRNA (guanine-N(7)-)-me 98.7 2.6E-08 8.7E-13 74.1 5.7 81 11-99 73-172 (246)
116 3jwh_A HEN1; methyltransferase 98.7 2.5E-08 8.4E-13 72.4 5.4 79 12-100 54-141 (217)
117 3sso_A Methyltransferase; macr 98.7 1.2E-07 4.1E-12 76.3 9.8 108 11-134 247-359 (419)
118 2o57_A Putative sarcosine dime 98.7 2.1E-08 7.2E-13 76.0 5.2 83 11-103 105-190 (297)
119 1yb2_A Hypothetical protein TA 98.7 1.4E-08 4.8E-13 76.8 4.1 76 11-100 135-211 (275)
120 3dh0_A SAM dependent methyltra 98.7 2.6E-08 9E-13 72.0 5.3 81 12-103 63-146 (219)
121 2pbf_A Protein-L-isoaspartate 98.7 2.4E-08 8.2E-13 72.9 5.1 79 12-99 110-192 (227)
122 2yxl_A PH0851 protein, 450AA l 98.7 3.6E-08 1.2E-12 79.9 6.5 83 12-103 285-392 (450)
123 2b25_A Hypothetical protein; s 98.7 2.1E-08 7.1E-13 77.9 4.9 78 12-99 131-218 (336)
124 3ckk_A TRNA (guanine-N(7)-)-me 98.7 6.5E-08 2.2E-12 72.0 7.4 81 11-99 70-167 (235)
125 2xvm_A Tellurite resistance pr 98.6 4.6E-08 1.6E-12 69.4 6.3 82 6-99 49-135 (199)
126 1vl5_A Unknown conserved prote 98.6 2.8E-08 9.7E-13 73.9 5.3 82 8-100 56-140 (260)
127 3q7e_A Protein arginine N-meth 98.6 5E-08 1.7E-12 76.5 6.8 83 6-99 83-172 (349)
128 1pjz_A Thiopurine S-methyltran 98.6 1.3E-08 4.4E-13 73.8 3.2 84 5-97 38-137 (203)
129 3mgg_A Methyltransferase; NYSG 98.6 4.5E-08 1.6E-12 73.3 6.2 85 11-106 61-148 (276)
130 1ri5_A MRNA capping enzyme; me 98.6 4E-08 1.4E-12 74.0 5.9 80 12-100 88-174 (298)
131 1sqg_A SUN protein, FMU protei 98.6 1.2E-07 4E-12 76.3 8.9 82 12-103 271-377 (429)
132 1wzn_A SAM-dependent methyltra 98.6 5.2E-08 1.8E-12 72.0 6.3 83 5-100 57-145 (252)
133 4hc4_A Protein arginine N-meth 98.6 5.6E-08 1.9E-12 77.4 6.7 84 5-100 99-189 (376)
134 2oo3_A Protein involved in cat 98.6 2.4E-08 8.3E-13 76.7 4.3 86 4-98 106-196 (283)
135 2h00_A Methyltransferase 10 do 98.6 1.2E-08 4.1E-13 75.9 2.4 83 11-98 89-190 (254)
136 3g5t_A Trans-aconitate 3-methy 98.6 4.5E-08 1.6E-12 74.5 5.7 84 10-98 60-147 (299)
137 2yxe_A Protein-L-isoaspartate 98.6 4.4E-08 1.5E-12 70.8 5.4 75 12-100 103-177 (215)
138 3ofk_A Nodulation protein S; N 98.6 2.5E-08 8.4E-13 72.1 4.0 81 6-100 68-154 (216)
139 1xxl_A YCGJ protein; structura 98.6 3.5E-08 1.2E-12 72.8 4.9 85 7-102 39-126 (239)
140 3tm4_A TRNA (guanine N2-)-meth 98.6 7.2E-08 2.5E-12 76.3 6.9 83 4-97 232-327 (373)
141 3o4f_A Spermidine synthase; am 98.6 2.5E-08 8.6E-13 77.1 4.2 79 12-99 108-197 (294)
142 1jg1_A PIMT;, protein-L-isoasp 98.6 5.9E-08 2E-12 71.5 6.0 79 8-100 110-189 (235)
143 1i9g_A Hypothetical protein RV 98.6 3E-08 1E-12 74.5 4.3 77 11-99 124-202 (280)
144 2gb4_A Thiopurine S-methyltran 98.6 4.8E-08 1.7E-12 73.5 5.4 85 5-98 84-189 (252)
145 3jwg_A HEN1, methyltransferase 98.6 3.1E-08 1.1E-12 71.8 4.1 79 12-100 54-141 (219)
146 3g2m_A PCZA361.24; SAM-depende 98.6 2.6E-08 9E-13 75.8 3.8 89 4-103 97-193 (299)
147 2fyt_A Protein arginine N-meth 98.6 6.7E-08 2.3E-12 75.6 6.1 83 5-98 80-169 (340)
148 1y8c_A S-adenosylmethionine-de 98.6 7.1E-08 2.4E-12 70.5 5.8 82 5-99 53-141 (246)
149 2kw5_A SLR1183 protein; struct 98.6 1.6E-07 5.6E-12 67.1 7.5 86 6-103 46-134 (202)
150 1ve3_A Hypothetical protein PH 98.6 5.1E-08 1.7E-12 70.7 4.4 83 7-101 56-143 (227)
151 1g6q_1 HnRNP arginine N-methyl 98.6 9.8E-08 3.4E-12 74.2 6.3 84 5-99 54-144 (328)
152 1i1n_A Protein-L-isoaspartate 98.6 8.2E-08 2.8E-12 70.0 5.5 76 12-100 103-182 (226)
153 2y1w_A Histone-arginine methyl 98.6 1.3E-07 4.3E-12 74.1 6.9 83 5-99 66-154 (348)
154 3k0b_A Predicted N6-adenine-sp 98.5 7.5E-08 2.6E-12 77.0 5.5 53 13-76 265-317 (393)
155 3sm3_A SAM-dependent methyltra 98.5 3.6E-08 1.2E-12 71.6 3.3 86 6-101 47-142 (235)
156 1vbf_A 231AA long hypothetical 98.5 6.8E-08 2.3E-12 70.6 4.7 78 7-100 88-165 (231)
157 3ldg_A Putative uncharacterize 98.5 1.1E-07 3.7E-12 75.9 6.2 74 13-97 258-340 (384)
158 3dli_A Methyltransferase; PSI- 98.5 1.1E-07 3.8E-12 69.9 5.8 79 6-101 58-141 (240)
159 2r6z_A UPF0341 protein in RSP 98.5 5.7E-08 1.9E-12 73.6 4.2 67 3-75 97-170 (258)
160 3d2l_A SAM-dependent methyltra 98.5 8.5E-08 2.9E-12 70.1 4.9 75 12-99 55-136 (243)
161 3c6k_A Spermine synthase; sper 98.5 1.2E-07 4E-12 75.6 5.9 82 12-99 229-330 (381)
162 3ll7_A Putative methyltransfer 98.5 5.9E-08 2E-12 78.1 4.1 63 5-76 109-173 (410)
163 3gu3_A Methyltransferase; alph 98.5 1E-07 3.6E-12 72.1 5.0 80 11-103 47-129 (284)
164 3h2b_A SAM-dependent methyltra 98.5 1.9E-07 6.5E-12 66.8 6.2 81 6-102 58-143 (203)
165 2yqz_A Hypothetical protein TT 98.5 1.1E-07 3.9E-12 70.2 5.1 83 5-99 55-140 (263)
166 1fbn_A MJ fibrillarin homologu 98.5 1.2E-07 4.1E-12 69.7 4.9 78 12-99 99-177 (230)
167 2i62_A Nicotinamide N-methyltr 98.5 6.5E-08 2.2E-12 71.7 3.4 92 5-102 72-200 (265)
168 2p8j_A S-adenosylmethionine-de 98.5 1.3E-07 4.5E-12 67.7 4.9 81 9-101 44-129 (209)
169 2p7i_A Hypothetical protein; p 98.5 7.7E-08 2.7E-12 70.2 3.7 77 8-100 61-141 (250)
170 3dtn_A Putative methyltransfer 98.5 7E-08 2.4E-12 70.5 3.4 79 11-103 68-151 (234)
171 3b3j_A Histone-arginine methyl 98.5 1.5E-07 5E-12 77.1 5.6 82 5-98 174-261 (480)
172 1r18_A Protein-L-isoaspartate( 98.5 7.6E-08 2.6E-12 70.5 3.5 76 12-100 115-194 (227)
173 2ex4_A Adrenal gland protein A 98.5 8.8E-08 3E-12 70.5 3.9 80 11-101 102-186 (241)
174 3ldu_A Putative methylase; str 98.5 1.4E-07 4.8E-12 75.2 5.3 55 12-77 258-312 (385)
175 3g5l_A Putative S-adenosylmeth 98.5 1.1E-07 3.7E-12 70.4 4.2 79 7-99 62-144 (253)
176 2ipx_A RRNA 2'-O-methyltransfe 98.5 3.3E-07 1.1E-11 67.2 6.8 78 12-99 103-181 (233)
177 3bzb_A Uncharacterized protein 98.5 6.5E-07 2.2E-11 68.0 8.6 87 4-98 94-203 (281)
178 3thr_A Glycine N-methyltransfe 98.5 4.4E-07 1.5E-11 68.4 7.5 87 6-99 74-174 (293)
179 2pjd_A Ribosomal RNA small sub 98.5 2.8E-07 9.6E-12 71.9 6.6 74 12-99 221-302 (343)
180 1u2z_A Histone-lysine N-methyl 98.5 5.5E-07 1.9E-11 73.0 8.5 84 12-104 267-363 (433)
181 3fzg_A 16S rRNA methylase; met 98.5 1.8E-07 6.2E-12 68.4 5.0 86 2-100 62-152 (200)
182 3ujc_A Phosphoethanolamine N-m 98.4 6.3E-08 2.2E-12 71.7 2.2 80 11-103 78-162 (266)
183 3uwp_A Histone-lysine N-methyl 98.4 5.4E-07 1.8E-11 72.8 7.6 84 13-104 199-292 (438)
184 4fzv_A Putative methyltransfer 98.4 1.9E-06 6.5E-11 68.2 10.4 84 11-103 172-287 (359)
185 4fsd_A Arsenic methyltransfera 98.4 2.7E-07 9.4E-12 73.0 5.4 85 11-103 108-206 (383)
186 2vdw_A Vaccinia virus capping 98.4 8.2E-07 2.8E-11 68.4 7.9 82 11-100 71-169 (302)
187 2cmg_A Spermidine synthase; tr 98.4 3.2E-08 1.1E-12 75.0 -0.2 73 12-99 95-170 (262)
188 3e8s_A Putative SAM dependent 98.4 3.8E-07 1.3E-11 65.6 5.5 83 6-101 69-153 (227)
189 3i9f_A Putative type 11 methyl 98.4 5.7E-07 2E-11 62.5 6.2 80 5-103 33-115 (170)
190 3hnr_A Probable methyltransfer 98.4 8E-08 2.7E-12 69.5 1.7 81 7-103 63-148 (220)
191 2f8l_A Hypothetical protein LM 98.4 3.2E-07 1.1E-11 71.5 5.1 75 12-99 160-255 (344)
192 3ou2_A SAM-dependent methyltra 98.4 3.5E-07 1.2E-11 65.7 4.9 79 7-101 64-147 (218)
193 3tos_A CALS11; methyltransfera 98.4 8.6E-07 2.9E-11 67.3 7.2 66 33-102 152-219 (257)
194 2oyr_A UPF0341 protein YHIQ; a 98.4 1.4E-07 4.7E-12 71.6 2.7 64 4-76 103-174 (258)
195 2p35_A Trans-aconitate 2-methy 98.4 4.4E-07 1.5E-11 67.0 5.3 73 11-100 57-132 (259)
196 1nt2_A Fibrillarin-like PRE-rR 98.4 7.1E-07 2.4E-11 65.2 6.2 78 12-99 82-160 (210)
197 3pfg_A N-methyltransferase; N, 98.3 1.2E-07 4.2E-12 70.5 2.0 77 7-100 68-151 (263)
198 4hg2_A Methyltransferase type 98.3 1.4E-07 4.7E-12 71.3 2.2 77 5-98 55-133 (257)
199 1wy7_A Hypothetical protein PH 98.3 8.6E-07 2.9E-11 63.6 6.3 77 5-98 65-147 (207)
200 3e23_A Uncharacterized protein 98.3 2.7E-07 9.2E-12 66.4 3.6 77 6-100 60-141 (211)
201 2b9e_A NOL1/NOP2/SUN domain fa 98.3 1.3E-06 4.6E-11 67.6 7.6 83 11-102 127-236 (309)
202 2pxx_A Uncharacterized protein 98.3 2.2E-07 7.6E-12 66.5 3.0 75 13-100 67-159 (215)
203 3bkx_A SAM-dependent methyltra 98.3 7.1E-07 2.4E-11 66.6 5.8 84 12-103 69-162 (275)
204 1xtp_A LMAJ004091AAA; SGPP, st 98.3 5E-07 1.7E-11 66.5 4.6 77 12-101 117-198 (254)
205 2a14_A Indolethylamine N-methy 98.3 3.1E-07 1.1E-11 68.9 3.5 85 12-102 79-199 (263)
206 2r3s_A Uncharacterized protein 98.3 9.3E-07 3.2E-11 67.9 6.3 81 11-103 189-274 (335)
207 3dp7_A SAM-dependent methyltra 98.3 6.4E-07 2.2E-11 70.3 5.3 85 10-104 202-291 (363)
208 3m33_A Uncharacterized protein 98.3 1.1E-07 3.6E-12 69.7 0.6 75 6-97 65-139 (226)
209 2qy6_A UPF0209 protein YFCK; s 98.3 2.4E-06 8.3E-11 64.6 8.1 82 12-98 97-211 (257)
210 3l8d_A Methyltransferase; stru 98.3 3.3E-07 1.1E-11 67.0 3.2 82 6-101 70-154 (242)
211 3mcz_A O-methyltransferase; ad 98.3 1.6E-06 5.5E-11 67.3 7.1 84 11-104 203-291 (352)
212 3ggd_A SAM-dependent methyltra 98.3 9.2E-07 3.2E-11 65.0 5.4 87 6-101 73-164 (245)
213 3bkw_A MLL3908 protein, S-aden 98.3 4E-07 1.4E-11 66.5 3.4 79 8-100 62-144 (243)
214 3i53_A O-methyltransferase; CO 98.3 1.5E-06 5E-11 67.1 6.7 83 10-105 192-279 (332)
215 3cgg_A SAM-dependent methyltra 98.3 7.2E-07 2.5E-11 62.6 4.3 78 7-100 64-147 (195)
216 3id6_C Fibrillarin-like rRNA/T 98.3 1.9E-06 6.4E-11 64.3 6.7 79 11-99 101-180 (232)
217 3ccf_A Cyclopropane-fatty-acyl 98.3 7.2E-07 2.5E-11 67.0 4.4 77 7-100 75-154 (279)
218 3gwz_A MMCR; methyltransferase 98.3 2E-06 6.9E-11 67.6 7.1 82 10-104 225-311 (369)
219 3bgv_A MRNA CAP guanine-N7 met 98.2 1.7E-06 5.7E-11 66.2 5.8 84 11-100 57-155 (313)
220 2ip2_A Probable phenazine-spec 98.2 1E-06 3.5E-11 67.9 4.6 80 11-103 191-275 (334)
221 1tw3_A COMT, carminomycin 4-O- 98.2 2.5E-06 8.4E-11 66.4 6.8 79 11-102 207-290 (360)
222 2qe6_A Uncharacterized protein 98.2 4.6E-06 1.6E-10 63.2 8.1 86 11-103 104-199 (274)
223 1qzz_A RDMB, aclacinomycin-10- 98.2 1.8E-06 6.2E-11 67.4 5.9 78 11-101 206-288 (374)
224 3p2e_A 16S rRNA methylase; met 98.2 5.1E-07 1.7E-11 66.7 2.6 80 9-98 46-137 (225)
225 2aot_A HMT, histamine N-methyl 98.2 6E-06 2E-10 62.6 8.6 81 15-99 86-171 (292)
226 3bxo_A N,N-dimethyltransferase 98.2 1.5E-06 5E-11 63.3 4.9 79 7-102 58-143 (239)
227 4df3_A Fibrillarin-like rRNA/T 98.2 2E-06 6.7E-11 64.4 5.5 79 11-99 102-181 (233)
228 2gs9_A Hypothetical protein TT 98.2 9.7E-07 3.3E-11 63.4 3.5 73 13-101 58-133 (211)
229 3iv6_A Putative Zn-dependent a 98.1 1.5E-06 5.1E-11 66.0 4.0 83 4-99 60-147 (261)
230 1x19_A CRTF-related protein; m 98.1 8.2E-06 2.8E-10 63.6 8.0 80 11-103 214-298 (359)
231 2g72_A Phenylethanolamine N-me 98.1 2.4E-06 8.2E-11 64.6 4.5 87 10-100 93-215 (289)
232 1ne2_A Hypothetical protein TA 98.1 4E-06 1.4E-10 59.8 5.5 74 5-99 67-146 (200)
233 3v97_A Ribosomal RNA large sub 98.1 4.3E-06 1.5E-10 71.3 5.9 79 12-98 257-345 (703)
234 3q87_B N6 adenine specific DNA 98.1 1.3E-06 4.6E-11 61.3 2.4 73 5-100 39-123 (170)
235 4gqb_A Protein arginine N-meth 98.1 3.4E-06 1.2E-10 71.2 5.1 73 13-97 387-464 (637)
236 2okc_A Type I restriction enzy 98.1 3.2E-06 1.1E-10 68.2 4.6 77 11-98 208-305 (445)
237 3mq2_A 16S rRNA methyltransfer 98.0 1.4E-06 4.7E-11 63.1 2.0 77 11-99 51-139 (218)
238 1zq9_A Probable dimethyladenos 98.0 8.1E-06 2.8E-10 62.2 5.2 63 5-79 44-106 (285)
239 2ar0_A M.ecoki, type I restric 98.0 1.6E-05 5.4E-10 65.9 6.9 78 12-98 212-310 (541)
240 2avn_A Ubiquinone/menaquinone 98.0 3.3E-06 1.1E-10 62.8 2.6 77 6-99 71-151 (260)
241 3cc8_A Putative methyltransfer 97.9 2.4E-06 8.1E-11 61.5 1.7 74 11-100 54-130 (230)
242 4e2x_A TCAB9; kijanose, tetron 97.9 5E-06 1.7E-10 66.0 3.7 82 6-100 124-208 (416)
243 3giw_A Protein of unknown func 97.9 1.2E-05 4.2E-10 61.5 5.1 89 10-103 104-203 (277)
244 3ege_A Putative methyltransfer 97.9 1.2E-06 4.2E-11 65.3 -0.6 76 7-100 52-130 (261)
245 2ld4_A Anamorsin; methyltransf 97.9 2.8E-06 9.6E-11 59.5 1.1 72 16-100 25-101 (176)
246 1ej0_A FTSJ; methyltransferase 97.9 1.1E-05 3.7E-10 55.4 4.0 74 11-100 47-136 (180)
247 1af7_A Chemotaxis receptor met 97.9 6.8E-06 2.3E-10 62.7 3.0 80 12-100 138-252 (274)
248 2h1r_A Dimethyladenosine trans 97.8 1E-05 3.5E-10 62.1 3.8 61 5-78 58-118 (299)
249 1m6y_A S-adenosyl-methyltransf 97.8 2.6E-05 8.9E-10 60.2 6.0 60 11-77 50-109 (301)
250 3lcv_B Sisomicin-gentamicin re 97.8 2.5E-05 8.7E-10 59.6 5.1 86 2-101 145-237 (281)
251 3htx_A HEN1; HEN1, small RNA m 97.8 1.9E-05 6.4E-10 68.7 4.8 76 12-99 747-833 (950)
252 1p91_A Ribosomal RNA large sub 97.8 1.5E-05 5.1E-10 59.3 3.7 69 11-99 109-177 (269)
253 3ua3_A Protein arginine N-meth 97.7 8.1E-05 2.8E-09 63.6 6.9 80 12-97 447-531 (745)
254 1vlm_A SAM-dependent methyltra 97.7 2.6E-05 9E-10 56.4 3.3 69 15-101 69-140 (219)
255 3dou_A Ribosomal RNA large sub 97.6 0.00022 7.4E-09 51.1 7.7 77 8-100 44-139 (191)
256 2ih2_A Modification methylase 97.6 1.5E-05 5.1E-10 63.0 1.5 67 11-98 64-162 (421)
257 3hp7_A Hemolysin, putative; st 97.6 5E-06 1.7E-10 64.1 -1.5 80 6-99 102-184 (291)
258 3khk_A Type I restriction-modi 97.6 3E-05 1E-09 64.3 2.9 79 11-98 283-393 (544)
259 4azs_A Methyltransferase WBDD; 97.5 0.00011 3.8E-09 61.0 5.9 62 4-74 81-142 (569)
260 3opn_A Putative hemolysin; str 97.5 6.2E-06 2.1E-10 61.2 -1.6 79 6-98 54-135 (232)
261 3lkd_A Type I restriction-modi 97.5 0.00011 3.8E-09 60.9 5.8 80 11-98 248-356 (542)
262 1g60_A Adenine-specific methyl 97.5 9.7E-05 3.3E-09 55.4 5.0 53 39-99 4-73 (260)
263 3frh_A 16S rRNA methylase; met 97.5 7.2E-05 2.5E-09 56.4 4.0 84 2-100 118-206 (253)
264 1boo_A Protein (N-4 cytosine-s 97.4 0.00019 6.5E-09 55.6 5.8 54 38-99 13-83 (323)
265 2plw_A Ribosomal RNA methyltra 97.4 0.00022 7.4E-09 50.5 5.3 73 11-99 48-153 (201)
266 2xyq_A Putative 2'-O-methyl tr 97.4 0.00015 5E-09 55.8 4.7 65 11-100 92-171 (290)
267 1eg2_A Modification methylase 97.4 0.00029 9.9E-09 54.7 6.2 54 38-99 37-105 (319)
268 3gru_A Dimethyladenosine trans 97.4 0.00034 1.2E-08 53.8 6.1 59 6-77 67-125 (295)
269 2zig_A TTHA0409, putative modi 97.3 0.00037 1.3E-08 53.2 5.6 54 38-99 20-96 (297)
270 2nyu_A Putative ribosomal RNA 97.2 0.00068 2.3E-08 47.6 5.9 73 12-100 56-145 (196)
271 4a6d_A Hydroxyindole O-methylt 97.2 0.00032 1.1E-08 54.8 4.5 83 7-103 199-286 (353)
272 3lst_A CALO1 methyltransferase 97.1 0.00019 6.4E-09 55.7 2.4 79 10-104 207-290 (348)
273 3s1s_A Restriction endonucleas 97.1 0.00075 2.6E-08 58.5 6.1 78 12-98 349-463 (878)
274 2zfu_A Nucleomethylin, cerebra 97.1 0.00032 1.1E-08 50.2 3.1 63 12-100 87-151 (215)
275 3tqs_A Ribosomal RNA small sub 97.0 0.00072 2.5E-08 50.8 4.8 61 5-76 45-106 (255)
276 1qam_A ERMC' methyltransferase 96.8 0.0013 4.6E-08 48.7 4.9 59 5-76 46-104 (244)
277 3fut_A Dimethyladenosine trans 96.8 0.0014 4.8E-08 49.7 4.9 68 6-86 63-130 (271)
278 2wa2_A Non-structural protein 96.7 8.4E-05 2.9E-09 56.6 -2.4 75 12-99 104-192 (276)
279 1yub_A Ermam, rRNA methyltrans 96.7 4.3E-05 1.5E-09 56.6 -4.2 82 4-98 44-143 (245)
280 1wg8_A Predicted S-adenosylmet 96.6 0.0023 7.9E-08 49.0 4.9 58 11-78 44-101 (285)
281 3reo_A (ISO)eugenol O-methyltr 96.5 0.0016 5.5E-08 51.0 3.1 74 10-104 226-304 (368)
282 3p9c_A Caffeic acid O-methyltr 96.5 0.0014 4.9E-08 51.2 2.8 74 10-104 224-302 (364)
283 2p41_A Type II methyltransfera 96.3 0.00041 1.4E-08 53.4 -1.0 73 12-99 104-190 (305)
284 1fp1_D Isoliquiritigenin 2'-O- 96.3 0.00093 3.2E-08 52.2 0.9 72 11-103 233-309 (372)
285 2oxt_A Nucleoside-2'-O-methylt 96.2 0.00025 8.7E-09 53.5 -2.7 76 12-100 96-185 (265)
286 1fp2_A Isoflavone O-methyltran 96.1 0.002 6.8E-08 49.9 1.9 72 11-103 212-291 (352)
287 3pvc_A TRNA 5-methylaminomethy 96.0 0.0048 1.6E-07 52.1 4.0 82 12-98 95-209 (689)
288 3vyw_A MNMC2; tRNA wobble urid 95.9 0.0094 3.2E-07 46.1 4.7 51 40-98 168-224 (308)
289 3ufb_A Type I restriction-modi 95.2 0.027 9.2E-07 46.4 5.5 57 12-76 255-312 (530)
290 3uzu_A Ribosomal RNA small sub 95.2 0.045 1.5E-06 41.4 6.4 41 5-50 58-102 (279)
291 1zg3_A Isoflavanone 4'-O-methy 95.1 0.0077 2.6E-07 46.6 1.8 72 11-103 217-296 (358)
292 3ftd_A Dimethyladenosine trans 95.0 0.022 7.4E-07 42.4 4.1 62 11-87 54-116 (249)
293 1qyr_A KSGA, high level kasuga 94.9 0.046 1.6E-06 40.7 5.7 58 11-77 41-101 (252)
294 3cg0_A Response regulator rece 94.4 0.35 1.2E-05 31.0 8.4 79 10-99 8-89 (140)
295 3rqi_A Response regulator prot 94.2 0.44 1.5E-05 32.7 9.0 79 9-98 5-85 (184)
296 3eod_A Protein HNR; response r 94.2 0.63 2.1E-05 29.5 9.6 78 10-98 6-85 (130)
297 3i42_A Response regulator rece 94.0 0.67 2.3E-05 29.2 9.4 68 11-89 3-72 (127)
298 3kht_A Response regulator; PSI 94.0 0.75 2.6E-05 29.7 9.6 70 10-88 4-75 (144)
299 3tka_A Ribosomal RNA small sub 94.0 0.072 2.5E-06 41.8 4.9 57 11-76 82-138 (347)
300 1pqw_A Polyketide synthase; ro 94.0 0.12 4.1E-06 36.2 5.8 76 10-100 62-137 (198)
301 3grc_A Sensor protein, kinase; 94.0 0.73 2.5E-05 29.5 9.3 67 11-88 6-74 (140)
302 2qr3_A Two-component system re 93.9 0.58 2E-05 29.9 8.8 77 11-98 3-86 (140)
303 2zay_A Response regulator rece 93.9 0.49 1.7E-05 30.7 8.4 79 10-99 7-89 (147)
304 3s2e_A Zinc-containing alcohol 93.8 0.14 4.9E-06 39.0 6.4 76 10-101 189-264 (340)
305 3to5_A CHEY homolog; alpha(5)b 93.3 0.21 7.2E-06 33.5 5.8 66 12-87 13-80 (134)
306 3ps9_A TRNA 5-methylaminomethy 93.3 0.32 1.1E-05 40.7 8.1 55 39-98 157-217 (676)
307 2gkg_A Response regulator homo 93.3 0.85 2.9E-05 28.3 8.5 76 12-98 6-86 (127)
308 3ilh_A Two component response 93.2 0.98 3.4E-05 28.9 9.0 75 10-88 8-84 (146)
309 3lua_A Response regulator rece 93.2 0.81 2.8E-05 29.4 8.6 78 11-99 4-88 (140)
310 3eul_A Possible nitrate/nitrit 93.2 0.88 3E-05 29.7 8.9 79 10-98 14-95 (152)
311 2rjn_A Response regulator rece 93.2 0.99 3.4E-05 29.5 9.1 78 10-98 6-85 (154)
312 3f6c_A Positive transcription 93.1 0.7 2.4E-05 29.3 8.1 76 12-98 2-80 (134)
313 3hzh_A Chemotaxis response reg 93.1 1.2 4.2E-05 29.3 10.1 81 11-99 36-118 (157)
314 3hv2_A Response regulator/HD d 93.0 0.79 2.7E-05 30.1 8.4 77 11-98 14-92 (153)
315 1tmy_A CHEY protein, TMY; chem 93.0 0.96 3.3E-05 28.0 8.5 67 12-88 3-71 (120)
316 1k66_A Phytochrome response re 93.0 1.1 3.8E-05 28.7 9.2 86 10-99 5-99 (149)
317 4eez_A Alcohol dehydrogenase 1 93.0 0.41 1.4E-05 36.4 7.7 78 10-101 187-264 (348)
318 4e7p_A Response regulator; DNA 92.6 1.4 4.7E-05 28.7 9.7 79 11-99 20-101 (150)
319 3jte_A Response regulator rece 92.5 1.3 4.6E-05 28.3 10.2 79 11-98 3-83 (143)
320 4dup_A Quinone oxidoreductase; 92.4 0.26 8.9E-06 37.9 5.9 77 9-101 190-266 (353)
321 3cz5_A Two-component response 92.3 1 3.5E-05 29.4 8.2 79 11-99 5-86 (153)
322 2r25_B Osmosensing histidine p 92.3 1.4 4.8E-05 28.2 8.7 83 12-99 3-88 (133)
323 4dvj_A Putative zinc-dependent 92.2 0.43 1.5E-05 36.9 7.0 74 10-99 196-269 (363)
324 3qwb_A Probable quinone oxidor 92.2 0.2 6.9E-06 38.1 5.0 76 10-100 172-247 (334)
325 3jyn_A Quinone oxidoreductase; 92.2 0.23 7.8E-06 37.7 5.3 77 10-101 164-240 (325)
326 1f8f_A Benzyl alcohol dehydrog 92.1 0.41 1.4E-05 36.9 6.8 77 10-101 213-290 (371)
327 2c0c_A Zinc binding alcohol de 92.1 0.31 1.1E-05 37.6 6.1 75 10-100 187-261 (362)
328 3t6k_A Response regulator rece 92.0 1.6 5.3E-05 28.0 8.9 67 11-88 4-72 (136)
329 3jv7_A ADH-A; dehydrogenase, n 92.0 0.48 1.7E-05 36.1 7.0 76 11-101 196-271 (345)
330 3cnb_A DNA-binding response re 92.0 1.5 5.2E-05 27.9 10.3 69 10-88 7-78 (143)
331 1dz3_A Stage 0 sporulation pro 92.0 1.2 4E-05 28.2 8.0 77 12-98 3-83 (130)
332 3crn_A Response regulator rece 91.9 1.6 5.3E-05 27.8 9.4 67 11-88 3-71 (132)
333 3kto_A Response regulator rece 91.8 0.99 3.4E-05 28.9 7.5 78 11-99 6-87 (136)
334 3lte_A Response regulator; str 91.7 1.6 5.4E-05 27.5 9.7 78 10-98 5-85 (132)
335 2qxy_A Response regulator; reg 91.5 1.8 6.1E-05 27.7 9.0 76 11-98 4-81 (142)
336 3hdg_A Uncharacterized protein 91.4 1.8 6.1E-05 27.5 8.8 76 11-98 7-84 (137)
337 2lpm_A Two-component response 91.4 0.18 6.3E-06 33.4 3.5 57 10-76 7-63 (123)
338 1v3u_A Leukotriene B4 12- hydr 91.3 0.37 1.3E-05 36.5 5.7 75 10-100 169-244 (333)
339 3f6p_A Transcriptional regulat 91.3 1.3 4.3E-05 27.7 7.5 75 12-98 3-79 (120)
340 1qkk_A DCTD, C4-dicarboxylate 91.2 2.1 7.1E-05 27.9 8.8 76 12-98 4-81 (155)
341 3a10_A Response regulator; pho 91.2 1.7 5.6E-05 26.7 9.5 76 12-98 2-79 (116)
342 2hcy_A Alcohol dehydrogenase 1 91.2 0.82 2.8E-05 34.9 7.5 77 10-101 193-270 (347)
343 3hdv_A Response regulator; PSI 91.2 1.9 6.4E-05 27.3 10.7 80 10-99 6-88 (136)
344 1wly_A CAAR, 2-haloacrylate re 91.0 0.36 1.2E-05 36.6 5.3 76 10-100 169-244 (333)
345 3t8y_A CHEB, chemotaxis respon 91.0 2.2 7.5E-05 28.4 8.8 79 11-99 25-105 (164)
346 3gms_A Putative NADPH:quinone 90.9 0.36 1.2E-05 36.8 5.2 77 10-101 168-244 (340)
347 3fbg_A Putative arginate lyase 90.9 0.61 2.1E-05 35.7 6.6 73 10-98 174-246 (346)
348 4eye_A Probable oxidoreductase 90.9 0.52 1.8E-05 36.0 6.1 75 10-100 183-257 (342)
349 4a2c_A Galactitol-1-phosphate 90.8 1.1 3.6E-05 34.0 7.8 78 12-103 186-263 (346)
350 3pi7_A NADH oxidoreductase; gr 90.8 0.45 1.5E-05 36.4 5.7 77 10-101 188-264 (349)
351 1qor_A Quinone oxidoreductase; 90.8 0.34 1.2E-05 36.6 5.0 76 10-100 164-239 (327)
352 3cu5_A Two component transcrip 90.7 1.8 6E-05 28.0 8.0 75 12-97 3-81 (141)
353 4ej6_A Putative zinc-binding d 90.6 0.34 1.1E-05 37.6 4.9 77 10-101 205-285 (370)
354 4dad_A Putative pilus assembly 90.5 1.8 6.1E-05 27.9 7.9 80 9-99 18-102 (146)
355 2qsj_A DNA-binding response re 90.5 2.2 7.4E-05 27.7 8.4 76 12-98 4-83 (154)
356 4b7c_A Probable oxidoreductase 90.5 0.38 1.3E-05 36.5 5.0 77 9-100 172-248 (336)
357 3gl9_A Response regulator; bet 90.4 2.2 7.4E-05 26.8 9.8 65 12-87 3-69 (122)
358 2b4a_A BH3024; flavodoxin-like 90.4 2.3 7.8E-05 27.0 9.8 79 10-99 14-95 (138)
359 2pln_A HP1043, response regula 90.3 2.2 7.5E-05 27.1 8.1 67 10-89 17-83 (137)
360 2dph_A Formaldehyde dismutase; 90.2 0.37 1.3E-05 37.7 4.8 80 10-101 208-300 (398)
361 3gt7_A Sensor protein; structu 90.2 2.7 9.2E-05 27.5 9.6 68 10-88 6-75 (154)
362 3uko_A Alcohol dehydrogenase c 90.1 0.87 3E-05 35.2 6.8 77 10-101 216-296 (378)
363 1kgs_A DRRD, DNA binding respo 90.0 3 0.0001 28.9 9.2 76 12-98 3-80 (225)
364 1rjw_A ADH-HT, alcohol dehydro 90.0 0.57 2E-05 35.7 5.7 76 10-101 187-262 (339)
365 1s8n_A Putative antiterminator 89.9 2.5 8.7E-05 29.0 8.7 76 12-98 14-91 (205)
366 3kcn_A Adenylate cyclase homol 89.9 2.7 9.4E-05 27.2 8.6 75 11-97 4-80 (151)
367 3fpc_A NADP-dependent alcohol 89.9 0.31 1.1E-05 37.3 4.2 78 10-101 189-267 (352)
368 3mm4_A Histidine kinase homolo 89.4 3.6 0.00012 28.6 9.2 73 11-88 61-143 (206)
369 3r0j_A Possible two component 89.3 2.4 8.2E-05 30.3 8.4 67 11-88 23-91 (250)
370 1pl8_A Human sorbitol dehydrog 89.2 0.88 3E-05 34.9 6.2 76 10-100 194-273 (356)
371 2zig_A TTHA0409, putative modi 89.1 0.36 1.2E-05 36.4 3.9 38 4-41 250-287 (297)
372 1e3i_A Alcohol dehydrogenase, 89.1 1.3 4.4E-05 34.1 7.2 77 10-101 218-298 (376)
373 3heb_A Response regulator rece 89.1 3.2 0.00011 26.9 10.5 85 11-99 4-96 (152)
374 1cdo_A Alcohol dehydrogenase; 89.1 1.3 4.6E-05 34.0 7.2 77 10-101 215-295 (374)
375 1e3j_A NADP(H)-dependent ketos 89.0 1.3 4.6E-05 33.7 7.1 80 10-100 191-271 (352)
376 1ys7_A Transcriptional regulat 89.0 4 0.00014 28.5 9.2 77 11-98 7-85 (233)
377 1k68_A Phytochrome response re 89.0 2.9 0.0001 26.2 9.6 84 12-99 3-92 (140)
378 3ip1_A Alcohol dehydrogenase, 89.0 0.79 2.7E-05 35.9 5.9 79 10-101 236-319 (404)
379 3m6m_D Sensory/regulatory prot 88.9 1.1 3.6E-05 29.2 5.7 67 10-87 13-81 (143)
380 3gg2_A Sugar dehydrogenase, UD 88.9 1.3 4.5E-05 35.5 7.2 83 2-100 16-122 (450)
381 1jvb_A NAD(H)-dependent alcoho 88.9 0.77 2.6E-05 35.0 5.7 75 11-100 196-271 (347)
382 2zb4_A Prostaglandin reductase 88.8 0.75 2.6E-05 35.2 5.6 76 10-100 184-260 (357)
383 3cfy_A Putative LUXO repressor 88.7 3.3 0.00011 26.5 9.1 74 13-98 6-82 (137)
384 2qv0_A Protein MRKE; structura 88.6 3.3 0.00011 26.4 9.5 78 11-99 9-90 (143)
385 1p0f_A NADP-dependent alcohol 88.4 1.4 4.7E-05 33.9 6.9 76 10-100 214-293 (373)
386 1yio_A Response regulatory pro 88.4 4.4 0.00015 27.8 9.0 75 12-98 5-82 (208)
387 3g7u_A Cytosine-specific methy 88.4 0.46 1.6E-05 37.4 4.1 56 13-77 26-82 (376)
388 2y0c_A BCEC, UDP-glucose dehyd 88.3 0.91 3.1E-05 36.8 6.0 85 2-100 22-128 (478)
389 2d8a_A PH0655, probable L-thre 88.2 0.82 2.8E-05 34.9 5.4 77 10-100 190-267 (348)
390 1srr_A SPO0F, sporulation resp 88.2 3.2 0.00011 25.7 9.3 74 12-97 4-79 (124)
391 3cg4_A Response regulator rece 88.2 3.5 0.00012 26.1 13.2 68 10-88 6-75 (142)
392 2k4m_A TR8_protein, UPF0146 pr 88.2 0.28 9.4E-06 34.1 2.4 61 10-98 58-119 (153)
393 2j3h_A NADP-dependent oxidored 88.1 0.58 2E-05 35.5 4.5 75 10-99 179-254 (345)
394 3uog_A Alcohol dehydrogenase; 87.9 0.48 1.6E-05 36.5 4.0 77 10-102 212-289 (363)
395 1kol_A Formaldehyde dehydrogen 87.9 1 3.6E-05 34.9 5.9 80 10-101 208-301 (398)
396 2qzj_A Two-component response 87.7 3.8 0.00013 26.1 9.2 77 11-99 4-82 (136)
397 2a9o_A Response regulator; ess 87.6 3.4 0.00011 25.3 9.1 76 12-99 2-79 (120)
398 3b2n_A Uncharacterized protein 87.5 3.8 0.00013 25.9 9.2 77 12-98 4-83 (133)
399 2jhf_A Alcohol dehydrogenase E 87.5 1.6 5.4E-05 33.6 6.7 76 10-100 214-293 (374)
400 1zgz_A Torcad operon transcrip 87.4 3.5 0.00012 25.4 9.5 75 12-98 3-79 (122)
401 1mvo_A PHOP response regulator 87.4 3.8 0.00013 25.7 9.4 76 12-98 4-81 (136)
402 1p6q_A CHEY2; chemotaxis, sign 87.4 3.7 0.00013 25.5 8.3 68 11-88 6-75 (129)
403 2j8z_A Quinone oxidoreductase; 87.3 1.1 3.9E-05 34.2 5.8 76 10-100 186-261 (354)
404 3fwz_A Inner membrane protein 87.2 2.8 9.6E-05 27.5 7.1 75 9-99 28-104 (140)
405 2fzw_A Alcohol dehydrogenase c 87.2 1.9 6.5E-05 33.1 7.0 77 10-101 213-293 (373)
406 2eih_A Alcohol dehydrogenase; 86.9 0.6 2.1E-05 35.6 4.0 76 10-100 190-265 (343)
407 1jbe_A Chemotaxis protein CHEY 86.8 4 0.00014 25.3 9.5 68 11-88 4-73 (128)
408 3m6i_A L-arabinitol 4-dehydrog 86.7 2.1 7E-05 32.8 6.9 79 10-100 202-283 (363)
409 3n0r_A Response regulator; sig 86.7 1.7 5.7E-05 32.5 6.3 56 12-77 161-216 (286)
410 1uuf_A YAHK, zinc-type alcohol 86.6 3.6 0.00012 31.7 8.3 72 10-100 217-288 (369)
411 3kyj_B CHEY6 protein, putative 86.6 1.5 5E-05 28.3 5.3 77 12-98 14-93 (145)
412 1yb5_A Quinone oxidoreductase; 86.6 0.9 3.1E-05 34.9 4.8 76 10-100 194-269 (351)
413 3c97_A Signal transduction his 86.5 1.8 6.1E-05 27.7 5.7 66 11-87 10-77 (140)
414 1mb3_A Cell division response 86.5 2.3 7.8E-05 26.3 6.0 65 13-88 3-69 (124)
415 2qvg_A Two component response 86.4 4.6 0.00016 25.6 9.8 74 11-88 7-83 (143)
416 3c3w_A Two component transcrip 86.3 3.7 0.00013 28.9 7.7 77 12-98 2-80 (225)
417 1vj0_A Alcohol dehydrogenase, 86.2 0.66 2.3E-05 36.0 3.9 78 10-101 218-299 (380)
418 3snk_A Response regulator CHEY 86.1 0.86 2.9E-05 29.1 3.9 54 11-75 14-68 (135)
419 2pl1_A Transcriptional regulat 86.0 4.3 0.00015 24.9 10.1 76 13-99 2-79 (121)
420 1dbw_A Transcriptional regulat 86.0 4.5 0.00015 25.1 10.6 77 11-99 3-82 (126)
421 3k96_A Glycerol-3-phosphate de 85.9 2.6 8.8E-05 32.7 7.1 81 4-98 45-131 (356)
422 3q9s_A DNA-binding response re 85.8 4.1 0.00014 29.3 7.9 66 12-88 38-105 (249)
423 1xhf_A DYE resistance, aerobic 85.7 4.5 0.00015 24.9 9.7 75 12-98 4-80 (123)
424 3gaz_A Alcohol dehydrogenase s 85.7 1.7 5.9E-05 33.1 6.0 72 10-99 174-245 (343)
425 2j48_A Two-component sensor ki 85.6 4.2 0.00014 24.4 9.0 67 12-89 2-70 (119)
426 1a04_A Nitrate/nitrite respons 85.5 6.4 0.00022 27.1 8.6 79 11-98 5-85 (215)
427 1xa0_A Putative NADPH dependen 85.3 1.4 4.7E-05 33.2 5.2 73 10-100 173-246 (328)
428 2oqr_A Sensory transduction pr 85.3 6.3 0.00022 27.4 8.5 66 12-88 5-72 (230)
429 3n53_A Response regulator rece 85.0 4.8 0.00016 25.5 7.2 66 11-88 3-70 (140)
430 4e21_A 6-phosphogluconate dehy 84.9 1.6 5.5E-05 34.0 5.5 77 3-98 37-113 (358)
431 3oig_A Enoyl-[acyl-carrier-pro 84.7 9 0.00031 27.5 10.6 62 7-75 29-96 (266)
432 2h6e_A ADH-4, D-arabinose 1-de 84.7 0.92 3.1E-05 34.5 4.0 73 11-100 196-269 (344)
433 3nx4_A Putative oxidoreductase 84.7 0.6 2E-05 35.2 2.9 73 10-101 170-242 (324)
434 4auk_A Ribosomal RNA large sub 84.7 1.2 4E-05 35.3 4.6 64 8-90 230-293 (375)
435 2ayx_A Sensor kinase protein R 84.7 6.2 0.00021 28.4 8.4 78 11-99 129-208 (254)
436 3r24_A NSP16, 2'-O-methyl tran 84.5 0.83 2.8E-05 35.4 3.5 66 12-101 139-218 (344)
437 3nhm_A Response regulator; pro 84.5 5.5 0.00019 24.8 9.4 67 11-89 4-72 (133)
438 3h1g_A Chemotaxis protein CHEY 84.4 5.6 0.00019 24.9 10.4 69 11-88 5-75 (129)
439 3c3m_A Response regulator rece 84.1 6.1 0.00021 25.0 9.8 66 12-88 4-71 (138)
440 1g55_A DNA cytosine methyltran 84.1 0.48 1.6E-05 36.7 2.1 50 13-76 28-78 (343)
441 1iz0_A Quinone oxidoreductase; 83.9 3.8 0.00013 30.4 7.1 68 10-99 149-217 (302)
442 2b5w_A Glucose dehydrogenase; 83.4 1.7 5.9E-05 33.2 5.1 73 10-100 197-273 (357)
443 3ggo_A Prephenate dehydrogenas 83.4 1.3 4.6E-05 33.6 4.4 74 4-97 49-125 (314)
444 3eqz_A Response regulator; str 83.0 6.4 0.00022 24.5 7.3 74 11-97 3-78 (135)
445 3h5i_A Response regulator/sens 82.7 7.1 0.00024 24.8 12.6 79 10-99 4-85 (140)
446 3dzd_A Transcriptional regulat 82.2 8.1 0.00028 29.9 8.6 65 13-88 2-68 (368)
447 2jba_A Phosphate regulon trans 81.8 6.9 0.00024 24.1 8.2 66 12-88 3-70 (127)
448 2rdm_A Response regulator rece 81.8 7.1 0.00024 24.2 9.6 78 11-98 5-85 (132)
449 3trk_A Nonstructural polyprote 81.7 1.8 6.2E-05 33.0 4.3 39 66-104 211-263 (324)
450 4a7p_A UDP-glucose dehydrogena 81.5 3.8 0.00013 32.9 6.5 83 2-100 22-129 (446)
451 4gwg_A 6-phosphogluconate dehy 80.8 4.2 0.00014 33.0 6.6 81 3-98 19-101 (484)
452 2gwr_A DNA-binding response re 80.6 10 0.00034 26.7 8.1 75 12-98 6-82 (238)
453 2zyd_A 6-phosphogluconate dehy 80.6 3.6 0.00012 33.2 6.2 80 3-97 30-110 (480)
454 3gqv_A Enoyl reductase; medium 80.2 6.8 0.00023 30.1 7.5 75 10-100 188-263 (371)
455 4fs3_A Enoyl-[acyl-carrier-pro 80.2 14 0.00049 26.6 11.7 62 6-74 27-94 (256)
456 4dcm_A Ribosomal RNA large sub 80.1 5.7 0.00019 30.9 7.0 78 7-98 54-134 (375)
457 1bg6_A N-(1-D-carboxylethyl)-L 80.1 4.6 0.00016 30.4 6.4 81 6-99 22-108 (359)
458 1zh2_A KDP operon transcriptio 80.0 7.8 0.00027 23.5 9.1 76 12-99 2-79 (121)
459 3ktd_A Prephenate dehydrogenas 79.9 2.6 9E-05 32.6 4.9 74 3-95 23-96 (341)
460 4eso_A Putative oxidoreductase 79.8 14 0.00049 26.5 9.2 82 6-98 27-136 (255)
461 1pgj_A 6PGDH, 6-PGDH, 6-phosph 79.5 4.6 0.00016 32.5 6.4 84 3-97 16-100 (478)
462 2dpo_A L-gulonate 3-dehydrogen 79.0 12 0.00041 28.5 8.4 81 4-98 22-121 (319)
463 2dq4_A L-threonine 3-dehydroge 79.0 1.7 5.9E-05 33.0 3.6 74 10-100 187-262 (343)
464 3rht_A (gatase1)-like protein; 78.7 9.5 0.00033 28.4 7.6 77 11-99 4-85 (259)
465 3krt_A Crotonyl COA reductase; 78.5 2.8 9.4E-05 33.3 4.8 76 10-100 252-344 (456)
466 3eq2_A Probable two-component 78.5 12 0.00042 28.6 8.5 68 11-89 5-74 (394)
467 3gt0_A Pyrroline-5-carboxylate 78.2 2.6 9E-05 30.4 4.3 65 13-98 31-95 (247)
468 1mv8_A GMD, GDP-mannose 6-dehy 78.1 6.3 0.00022 31.1 6.8 82 3-98 15-121 (436)
469 1piw_A Hypothetical zinc-type 78.1 3.7 0.00013 31.3 5.3 74 10-100 202-276 (360)
470 1ny5_A Transcriptional regulat 78.0 18 0.0006 28.1 9.3 74 13-98 2-78 (387)
471 2cdc_A Glucose dehydrogenase g 78.0 4.9 0.00017 30.7 6.0 73 10-101 203-279 (366)
472 4a0s_A Octenoyl-COA reductase/ 77.8 4.4 0.00015 31.9 5.8 75 10-100 244-336 (447)
473 1dc7_A NTRC, nitrogen regulati 77.6 2.9 0.0001 25.7 3.9 55 12-77 4-58 (124)
474 4dzz_A Plasmid partitioning pr 77.6 5.1 0.00017 27.4 5.5 62 5-76 24-85 (206)
475 2iz1_A 6-phosphogluconate dehy 77.4 5.4 0.00019 32.0 6.3 79 4-97 21-100 (474)
476 2hwk_A Helicase NSP2; rossman 77.2 2.2 7.6E-05 32.7 3.7 37 66-102 206-256 (320)
477 4ezb_A Uncharacterized conserv 77.1 3.7 0.00013 31.1 5.0 74 4-97 40-118 (317)
478 3tjr_A Short chain dehydrogena 77.0 17 0.00059 26.8 8.7 62 6-75 50-117 (301)
479 4fn4_A Short chain dehydrogena 76.9 12 0.00042 27.5 7.7 62 6-75 26-93 (254)
480 1f0y_A HCDH, L-3-hydroxyacyl-C 76.8 11 0.00039 27.8 7.6 81 4-98 31-134 (302)
481 1p2f_A Response regulator; DRR 76.6 14 0.00049 25.3 7.7 73 12-98 3-77 (220)
482 4e12_A Diketoreductase; oxidor 76.5 7.2 0.00025 28.8 6.4 80 5-98 21-119 (283)
483 2p4q_A 6-phosphogluconate dehy 76.2 4.2 0.00014 33.0 5.4 80 3-97 25-106 (497)
484 3two_A Mannitol dehydrogenase; 76.1 5.1 0.00017 30.4 5.6 68 10-101 199-266 (348)
485 2hqr_A Putative transcriptiona 76.0 17 0.00056 25.1 8.0 64 13-89 2-65 (223)
486 2c7p_A Modification methylase 75.8 1.4 4.7E-05 33.9 2.3 47 13-76 35-81 (327)
487 1x0v_A GPD-C, GPDH-C, glycerol 75.7 8.6 0.00029 29.0 6.8 73 12-98 39-122 (354)
488 2jk1_A HUPR, hydrogenase trans 75.3 13 0.00043 23.4 9.4 74 13-98 3-78 (139)
489 3k31_A Enoyl-(acyl-carrier-pro 75.3 22 0.00075 26.1 9.7 61 6-75 51-117 (296)
490 1gu7_A Enoyl-[acyl-carrier-pro 74.8 12 0.0004 28.4 7.3 83 10-101 191-276 (364)
491 1dcf_A ETR1 protein; beta-alph 74.5 8.8 0.0003 24.1 5.7 55 10-76 6-60 (136)
492 3ioy_A Short-chain dehydrogena 74.0 8.4 0.00029 28.9 6.3 63 7-75 28-96 (319)
493 2uyo_A Hypothetical protein ML 73.5 21 0.00071 27.0 8.4 84 11-103 125-221 (310)
494 2oze_A ORF delta'; para, walke 73.5 12 0.00042 27.3 7.0 20 5-24 59-78 (298)
495 2xj4_A MIPZ; replication, cell 73.4 3.7 0.00013 30.3 4.0 17 5-21 27-43 (286)
496 2o3j_A UDP-glucose 6-dehydroge 72.9 10 0.00035 30.5 6.8 27 2-28 23-51 (481)
497 2cf5_A Atccad5, CAD, cinnamyl 72.4 12 0.00042 28.4 6.9 73 10-100 203-275 (357)
498 2lse_A Four helix bundle prote 74.6 0.77 2.6E-05 28.1 0.0 73 18-99 18-90 (101)
499 3llv_A Exopolyphosphatase-rela 71.9 15 0.0005 23.6 6.4 52 8-75 26-79 (141)
500 1i3c_A Response regulator RCP1 71.9 17 0.00057 23.2 9.7 73 12-88 9-85 (149)
No 1
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.84 E-value=1.3e-20 Score=140.20 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=104.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
+++|++||+|+++++.|+++++..|+. ++++++++|+.+.++.+. .+ +||+||+|+.+..+..+++.+.++
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~-----~~---~fD~V~~d~~~~~~~~~l~~~~~~ 152 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA-----ND---SYQLVFGQVSPMDLKALVDAAWPL 152 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC-----TT---CEEEEEECCCTTTHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc-----CC---CcCeEEEcCcHHHHHHHHHHHHHH
Confidence 578999999999999999999999997 799999999999876542 25 899999999988999999999999
Q ss_pred ccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253 90 FKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 90 L~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
|+|||+++++|++|.|.+..+... +..+.++++|++++.++|+|+
T Consensus 153 LkpGG~lv~dn~~~~g~v~~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 197 (221)
T 3dr5_A 153 LRRGGALVLADALLDGTIADQTRK-----DRDTQAARDADEYIRSIEGAH 197 (221)
T ss_dssp EEEEEEEEETTTTGGGTCSCSSCC-----CHHHHHHHHHHHHHTTCTTEE
T ss_pred cCCCcEEEEeCCCCCCcCCCCCCC-----ChHHHHHHHHHHHHhhCCCee
Confidence 999999999999999999887643 456789999999999999873
No 2
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=99.81 E-value=2.8e-19 Score=133.83 Aligned_cols=126 Identities=50% Similarity=0.782 Sum_probs=106.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+..+..+.+ +||+||+|+++..+..+++.+.++|
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~---~fD~I~~d~~~~~~~~~l~~~~~~L 171 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG---SYDFGFVDADKPNYIKYHERLMKLV 171 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT---CEEEEEECSCGGGHHHHHHHHHHHE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC---CcCEEEECCchHHHHHHHHHHHHhc
Confidence 5799999999999999999999999977899999999998776532100014 8999999999889999999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
+|||+++++|++|+|.+..+....+...+..++.|++|++.+.++|+|+
T Consensus 172 ~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~ 220 (237)
T 3c3y_A 172 KVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIE 220 (237)
T ss_dssp EEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEE
T ss_pred CCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeE
Confidence 9999999999999999987744333344567899999999999999863
No 3
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.80 E-value=4.9e-19 Score=133.50 Aligned_cols=126 Identities=45% Similarity=0.698 Sum_probs=106.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+.....+.+ +||+||+|+.+..+..+++.+.++|
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~---~fD~V~~d~~~~~~~~~l~~~~~~L 180 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG---SYDFIFVDADKDNYLNYHKRLIDLV 180 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT---CBSEEEECSCSTTHHHHHHHHHHHB
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC---CEEEEEEcCchHHHHHHHHHHHHhC
Confidence 5789999999999999999999999978999999999998765521100025 8999999998888999999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhh-hhchHHHHHHHHHHhhCCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEIL-RSTRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 139 (139)
+|||+++++|++|.|.+..+....+... +..++++++|++.+.++|+++
T Consensus 181 kpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 230 (247)
T 1sui_A 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIE 230 (247)
T ss_dssp CTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHHHHHHTCTTBC
T ss_pred CCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHHHHHhhCCCeE
Confidence 9999999999999999988754322222 557889999999999999874
No 4
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.80 E-value=1.5e-19 Score=136.03 Aligned_cols=120 Identities=24% Similarity=0.415 Sum_probs=105.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|++||+|+++++.|+++++..|+.++++++++|+.+.++.+..+. ..+ +||+||+|+....+..+++.+.++|
T Consensus 85 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~-~~~---~fD~V~~d~~~~~~~~~l~~~~~~L 160 (242)
T 3r3h_A 85 DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEG-GEH---QFDFIFIDADKTNYLNYYELALKLV 160 (242)
T ss_dssp TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHH-CSS---CEEEEEEESCGGGHHHHHHHHHHHE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhcc-CCC---CEeEEEEcCChHHhHHHHHHHHHhc
Confidence 578999999999999999999999998899999999999877653210 015 8999999999888999999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
+|||+++++|++|.|.+..+... ...++++++|++.+.++|+|+
T Consensus 161 kpGG~lv~d~~~~~g~v~~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 204 (242)
T 3r3h_A 161 TPKGLIAIDNIFWDGKVIDPNDT-----SGQTREIKKLNQVIKNDSRVF 204 (242)
T ss_dssp EEEEEEEEECSSSSSCSSCTTCC-----CHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCeEEEEECCccCCcccCcccc-----ChHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999999887654 456789999999999999873
No 5
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.79 E-value=5.7e-19 Score=131.44 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=106.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHH-hhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALD-QLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~-~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
...+|+++|+|+++++.|+++++..|+.++++++++|+.+.++ .+ .+ +||+||+|+....+..+++.+.+
T Consensus 94 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~---~fD~V~~~~~~~~~~~~l~~~~~ 164 (232)
T 3ntv_A 94 DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN------DK---VYDMIFIDAAKAQSKKFFEIYTP 164 (232)
T ss_dssp TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------TS---CEEEEEEETTSSSHHHHHHHHGG
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------cC---CccEEEEcCcHHHHHHHHHHHHH
Confidence 4678999999999999999999999998899999999998766 54 36 89999999988889999999999
Q ss_pred cccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253 89 LFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 89 lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
+|+|||+++++|++|.|.+..+....++..+...+++++|++.+.++|+++
T Consensus 165 ~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (232)
T 3ntv_A 165 LLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYT 215 (232)
T ss_dssp GEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred hcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999988765234445677899999999999999863
No 6
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.78 E-value=1.5e-18 Score=130.54 Aligned_cols=117 Identities=20% Similarity=0.272 Sum_probs=104.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+.. .. +||+||+|++...+..+++.+.++|
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~----~~---~fD~V~~d~~~~~~~~~l~~~~~~L 160 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE----CP---AFDLIFIDADKPNNPHYLRWALRYS 160 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS----CC---CCSEEEECSCGGGHHHHHHHHHHTC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC----CC---CeEEEEECCchHHHHHHHHHHHHhc
Confidence 6789999999999999999999999988999999999998765421 24 7999999999888999999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
+|||+++++|++|.|.+..+... +..++.+++|++.+.++|+|+
T Consensus 161 kpGG~lv~~~~~~~g~v~~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 204 (248)
T 3tfw_A 161 RPGTLIIGDNVVRDGEVVNPQSA-----DERVQGVRQFIEMMGAEPRLT 204 (248)
T ss_dssp CTTCEEEEECCSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTEE
T ss_pred CCCeEEEEeCCCcCCcccCcccc-----chHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999999887644 578899999999999999873
No 7
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.77 E-value=4.5e-18 Score=125.02 Aligned_cols=118 Identities=22% Similarity=0.306 Sum_probs=104.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++|+++++++.|++++...|+.++++++++|+.+.++.+.... .. +||+||+|+....+..+++.+.++|
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~---~fD~v~~d~~~~~~~~~l~~~~~~L 157 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEK--YE---PFDFIFIDADKQNNPAYFEWALKLS 157 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT--CC---CCSEEEECSCGGGHHHHHHHHHHTC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC--CC---CcCEEEEcCCcHHHHHHHHHHHHhc
Confidence 579999999999999999999999998889999999998876653210 14 7999999999888899999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI 138 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (139)
+|||+++++++.+.|.+..+... ...++.+++|++.+.++|++
T Consensus 158 ~pgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~ 200 (223)
T 3duw_A 158 RPGTVIIGDNVVREGEVIDNTSN-----DPRVQGIRRFYELIAAEPRV 200 (223)
T ss_dssp CTTCEEEEESCSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTE
T ss_pred CCCcEEEEeCCCcCCcccCcccc-----chHHHHHHHHHHHHhhCCCe
Confidence 99999999999999988887644 46788999999999999986
No 8
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.77 E-value=3.5e-18 Score=125.61 Aligned_cols=120 Identities=25% Similarity=0.320 Sum_probs=103.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+..+.. .+ +||+||+|++...+..+++.+.++|
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-~~---~fD~v~~~~~~~~~~~~l~~~~~~L 164 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQ-AW---QYDLIYIDADKANTDLYYEESLKLL 164 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTC-TT---CEEEEEECSCGGGHHHHHHHHHHHE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccC-CC---CccEEEECCCHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999988899999999988765521100 05 8999999998888999999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPIR 139 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (139)
+|||+++++|+.|.|.+..+... ...++.+++|++.+.++|+++
T Consensus 165 ~pgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 208 (225)
T 3tr6_A 165 REGGLIAVDNVLRRGQVADEENQ-----SENNQLIRLFNQKVYKDERVD 208 (225)
T ss_dssp EEEEEEEEECSSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTEE
T ss_pred CCCcEEEEeCCCcCCcccCcccc-----ChHHHHHHHHHHHHhcCCCeE
Confidence 99999999999999998887644 456789999999999999863
No 9
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=99.77 E-value=3.5e-18 Score=127.26 Aligned_cols=117 Identities=30% Similarity=0.433 Sum_probs=103.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcc--cCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIH--FFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~--~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
+.+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+... . + +||+||+|+....+..+++.+.+
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~---~~~~---~fD~V~~d~~~~~~~~~l~~~~~ 170 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQG---KPLP---EFDLIFIDADKRNYPRYYEIGLN 170 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTS---SSCC---CEEEEEECSCGGGHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc---CCCC---CcCEEEECCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999778999999999887665311 1 5 89999999988889999999999
Q ss_pred cccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253 89 LFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI 138 (139)
Q Consensus 89 lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (139)
+|+|||+++++|+.|.|.+..+... ++.++.+++|++.+.++|++
T Consensus 171 ~LkpgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~ 215 (232)
T 3cbg_A 171 LLRRGGLMVIDNVLWHGKVTEVDPQ-----EAQTQVLQQFNRDLAQDERV 215 (232)
T ss_dssp TEEEEEEEEEECTTGGGGGGCSSCC-----SHHHHHHHHHHHHHTTCTTE
T ss_pred HcCCCeEEEEeCCCcCCccCCcccC-----ChHHHHHHHHHHHHhhCCCe
Confidence 9999999999999999999877643 57889999999999999986
No 10
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.76 E-value=8.1e-18 Score=123.93 Aligned_cols=119 Identities=29% Similarity=0.398 Sum_probs=103.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+..+. ... +||+||+|++...+..+++.+.++|
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~-~~~---~~D~v~~d~~~~~~~~~l~~~~~~L 169 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG-EAG---TFDVAVVDADKENCSAYYERCLQLL 169 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-CTT---CEEEEEECSCSTTHHHHHHHHHHHE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcC-CCC---CccEEEECCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999997899999999998876653210 005 8999999998888899999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI 138 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (139)
+|||+++++|++|.|.+..+... ++.++.+++|++.+.++|++
T Consensus 170 ~pgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~ 212 (229)
T 2avd_A 170 RPGGILAVLRVLWRGKVLQPPKG-----DVAAECVRNLNERIRRDVRV 212 (229)
T ss_dssp EEEEEEEEECCSGGGGGGSCCTT-----CHHHHHHHHHHHHHHHCTTE
T ss_pred CCCeEEEEECCCcCCcccCcccC-----ChHHHHHHHHHHHHhhCCCE
Confidence 99999999999999998877543 57889999999999999986
No 11
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.68 E-value=5.8e-16 Score=115.24 Aligned_cols=120 Identities=30% Similarity=0.398 Sum_probs=101.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh---------hhcc-cCCCceeEEEEcCCCcchH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD---------EKIH-FFFENFDYAFVDAHKDNYR 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~---------~~~~-~~~~~fD~If~D~~~~~~~ 80 (139)
+.+|+++|+|+++++.|+++++..|+.++++++++|+.+.++.+... .... + +||+||++.....+.
T Consensus 85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~---~fD~I~~~~~~~~~~ 161 (239)
T 2hnk_A 85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPS---SIDLFFLDADKENYP 161 (239)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTT---CEEEEEECSCGGGHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCC---CcCEEEEeCCHHHHH
Confidence 57899999999999999999999999778999999999876654210 0000 4 899999999888888
Q ss_pred HHHHHHhhcccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI 138 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (139)
.+++.+.++|+|||+++++++.|.|.+..+... ...++.+++|++.+.+++++
T Consensus 162 ~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 214 (239)
T 2hnk_A 162 NYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ-----EPSTVGIRKFNELVYNDSLV 214 (239)
T ss_dssp HHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCcccCcccc-----chHHHHHHHHHHHHhhCCCe
Confidence 999999999999999999999999988876543 46788999999999999876
No 12
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.66 E-value=2e-16 Score=115.46 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=90.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++|+|+++++.|+++++..++.++++++++|+.+.++.. . .||+||+|+....+..+++.+.++|
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-------~---~fD~v~~~~~~~~~~~~l~~~~~~L 150 (210)
T 3c3p_A 81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-------R---DIDILFMDCDVFNGADVLERMNRCL 150 (210)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-------C---SEEEEEEETTTSCHHHHHHHHGGGE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-------C---CCCEEEEcCChhhhHHHHHHHHHhc
Confidence 57899999999999999999999998778999999998876432 2 3999999998888999999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI 138 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (139)
+|||+++++|+.|.|.+..+ .. .+..+.+++|++.+.++|++
T Consensus 151 kpgG~lv~~~~~~~g~~~~~-~~-----~~~~~~~~~~~~~l~~~~~~ 192 (210)
T 3c3p_A 151 AKNALLIAVNALRRGSVAES-HE-----DPETAALREFNHHLSRRRDF 192 (210)
T ss_dssp EEEEEEEEESSSSCC------------------CCCHHHHHHTTCTTE
T ss_pred CCCeEEEEECccccCcccCc-cc-----chHHHHHHHHHHHHhhCCCe
Confidence 99999999999999887744 22 56788899999999998875
No 13
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.59 E-value=1.4e-15 Score=112.51 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=84.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++|+|+++++.|++++...|+.++++++++|+.+.++.... .+ +||+|+++.....+..+++.+.++|
T Consensus 78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~----~~---~fD~I~~~~~~~~~~~~l~~~~~~L 150 (233)
T 2gpy_A 78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLEL----YP---LFDVLFIDAAKGQYRRFFDMYSPMV 150 (233)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTT----SC---CEEEEEEEGGGSCHHHHHHHHGGGE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhccc----CC---CccEEEECCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999977899999999886554310 25 8999999998778889999999999
Q ss_pred cCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253 91 KVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI 138 (139)
Q Consensus 91 ~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (139)
+|||++++++++|.|.+..+.. .+...+.....+++|+..+.+++.|
T Consensus 151 ~pgG~lv~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (233)
T 2gpy_A 151 RPGGLILSDNVLFRGLVAETDI-EHKRHKQLATKIDTYNQWLLEHPQY 197 (233)
T ss_dssp EEEEEEEEETTTC--------------------------CTTTTCTTE
T ss_pred CCCeEEEEEcCCcCCccCCccc-cccchhHHHHHHHHHHHHHHhCCCe
Confidence 9999999999999987765542 1223345678899999999988875
No 14
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.58 E-value=8.3e-15 Score=107.80 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=83.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH---HHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN---YRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~---~~~~~~ 87 (139)
+.+|+++|+|+++++.|++|++..|+.++++++++|+.+.++.+..+.+ .+ +||+||+|+....+.. +++.+
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~-~~---~fD~V~~d~~~~~~~~~~~~~~~~- 157 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD-VD---TLDMVFLDHWKDRYLPDTLLLEKC- 157 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSC-CC---CCSEEEECSCGGGHHHHHHHHHHT-
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcC-CC---ceEEEEEcCCcccchHHHHHHHhc-
Confidence 6789999999999999999999999988899999999988765421000 15 8999999998777764 44445
Q ss_pred hcccCCeEEEEeCCCCCcccccccccCchhhhhchHHHHHHHHHHhhCCCC
Q 044253 88 TLFKVGGIVIYDNTLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASSGPI 138 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (139)
++|+|||+++++++.+.+. ++|++++.++|+|
T Consensus 158 ~~LkpgG~lv~~~~~~~~~-------------------~~~~~~l~~~~~~ 189 (221)
T 3u81_A 158 GLLRKGTVLLADNVIVPGT-------------------PDFLAYVRGSSSF 189 (221)
T ss_dssp TCCCTTCEEEESCCCCCCC-------------------HHHHHHHHHCTTE
T ss_pred cccCCCeEEEEeCCCCcch-------------------HHHHHHHhhCCCc
Confidence 8999999999999987542 4677777777765
No 15
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=99.42 E-value=3.2e-13 Score=99.45 Aligned_cols=89 Identities=8% Similarity=-0.014 Sum_probs=69.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCC--CCcEEEEeCChHHH--------------HHhhHH---hhhcccCCCceeEEE
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEV--DLKINLMESRALPA--------------LDQLLK---DEKIHFFFENFDYAF 71 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~--~~~i~~~~~da~~~--------------l~~~~~---~~~~~~~~~~fD~If 71 (139)
+.+|++||.|++..+.|++|++.+|+ .++++++.+|+.+. ++.+.. ...... +||+||
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~---~fDlIf 127 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFR---HPDVVL 127 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCC---CCSEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCC---CCCEEE
Confidence 57899999999999999999999998 88999999996542 111110 000025 899999
Q ss_pred EcCCCcchHHHHHHHhhcccCCeEEEEeCCCCC
Q 044253 72 VDAHKDNYRNYRETLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 72 ~D~~~~~~~~~~~~~~~lL~~gG~ii~~~~~~~ 104 (139)
+|+.+. ..++..++++|++||+|++||+.+.
T Consensus 128 IDg~k~--~~~~~~~l~~l~~GG~Iv~DNv~~r 158 (202)
T 3cvo_A 128 VDGRFR--VGCALATAFSITRPVTLLFDDYSQR 158 (202)
T ss_dssp ECSSSH--HHHHHHHHHHCSSCEEEEETTGGGC
T ss_pred EeCCCc--hhHHHHHHHhcCCCeEEEEeCCcCC
Confidence 999864 3667778899999999999997654
No 16
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=99.32 E-value=9e-12 Score=99.31 Aligned_cols=93 Identities=13% Similarity=0.266 Sum_probs=75.0
Q ss_pred Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---
Q 044253 3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--- 77 (139)
Q Consensus 3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--- 77 (139)
|+++.+..++ +|++||+|+++++.|++|++.+|+.+ +++++++|+.+.++.+..+ .. +||+|++|++..
T Consensus 226 ~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~---~~---~fD~Ii~DPP~~~~~ 299 (385)
T 2b78_A 226 FSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HL---TYDIIIIDPPSFARN 299 (385)
T ss_dssp HHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TC---CEEEEEECCCCC---
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh---CC---CccEEEECCCCCCCC
Confidence 5677776555 89999999999999999999999965 8999999999987765322 35 899999998752
Q ss_pred ---------chHHHHHHHhhcccCCeEEEEeCC
Q 044253 78 ---------NYRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 78 ---------~~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.+..++..+.++|+|||++++...
T Consensus 300 ~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 300 KKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp --CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 134456677899999999988643
No 17
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.32 E-value=1.2e-11 Score=88.53 Aligned_cols=85 Identities=9% Similarity=0.036 Sum_probs=70.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----hHHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----YRNYRETL 86 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----~~~~~~~~ 86 (139)
..+|+++|+|+++++.|++|++.+++ ++++++++|+.+.+.... .+ +||+|++|++... +...++.+
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~-----~~---~fD~i~~~~p~~~~~~~~~~~l~~~ 137 (189)
T 3p9n_A 67 AASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGT-----TS---PVDLVLADPPYNVDSADVDAILAAL 137 (189)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCC-----SS---CCSEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhcc-----CC---CccEEEECCCCCcchhhHHHHHHHH
Confidence 34799999999999999999999998 689999999999865432 35 8999999987543 45677778
Q ss_pred hh--cccCCeEEEEeCCCCC
Q 044253 87 MT--LFKVGGIVIYDNTLWG 104 (139)
Q Consensus 87 ~~--lL~~gG~ii~~~~~~~ 104 (139)
.+ +|+|||++++......
T Consensus 138 ~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 138 GTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp HHSSSCCTTCEEEEEEETTS
T ss_pred HhcCccCCCeEEEEEecCCC
Confidence 77 9999999999765443
No 18
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=99.30 E-value=2.4e-12 Score=98.99 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=74.8
Q ss_pred CCchhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253 2 PFNLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR 80 (139)
Q Consensus 2 ~~~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~ 80 (139)
||++++|..+ ++|+++|+|+.+++.+++|++.+|+.++++++++|+.++.. +. .||.|+++++.. ..
T Consensus 138 ~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--------~~---~~D~Vi~~~p~~-~~ 205 (278)
T 3k6r_A 138 HLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------EN---IADRILMGYVVR-TH 205 (278)
T ss_dssp TTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CS---CEEEEEECCCSS-GG
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--------cc---CCCEEEECCCCc-HH
Confidence 7999999886 58999999999999999999999999999999999987632 35 899999998653 34
Q ss_pred HHHHHHhhcccCCeEEEEeC
Q 044253 81 NYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+++.+.++|++||+|.+..
T Consensus 206 ~~l~~a~~~lk~gG~ih~~~ 225 (278)
T 3k6r_A 206 EFIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp GGHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEe
Confidence 57788889999999997643
No 19
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=99.29 E-value=1.9e-11 Score=94.16 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHHHHHHHhhcccCCeEEEEeC
Q 044253 23 SSETGLPIIKKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 23 ~~~~Ar~n~~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
..+.+++|+++.|+ .++++++.|++.+.++++. .. +||+||+|+++ ..+..+++.+.++|++||+|++||
T Consensus 173 ~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~-----~~---~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 173 SEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAP-----ID---TLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp CHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCC-----CC---CEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCC-----CC---CEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcC
Confidence 57789999999999 4899999999999887652 35 89999999986 345678999999999999999999
Q ss_pred CCCCcccccccccCchhhhhchHHHHHHHHHHh
Q 044253 101 TLWGGTVAMAEEQVPEILRSTRQPNWNLDKLFA 133 (139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (139)
+.+ + .+.++++++|++...
T Consensus 245 ~~~----------~----~G~~~Av~Ef~~~~~ 263 (282)
T 2wk1_A 245 YMM----------C----PPCKDAVDEYRAKFD 263 (282)
T ss_dssp CTT----------C----HHHHHHHHHHHHHTT
T ss_pred CCC----------C----HHHHHHHHHHHHhcC
Confidence 843 1 245789999987643
No 20
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.29 E-value=1.3e-11 Score=96.83 Aligned_cols=94 Identities=9% Similarity=0.004 Sum_probs=75.7
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---- 77 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---- 77 (139)
|+++.+..+++|++||+|+.+++.|++|++.+++.+ +++++++|+.+++...... .. +||+|++|++.-
T Consensus 167 ~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~---~~---~fD~Ii~dPP~~~~~~ 240 (332)
T 2igt_A 167 ASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR---GS---TYDIILTDPPKFGRGT 240 (332)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH---TC---CBSEEEECCCSEEECT
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc---CC---CceEEEECCccccCCc
Confidence 566777777899999999999999999999999865 5999999999987653221 35 899999998731
Q ss_pred ---------chHHHHHHHhhcccCCeEEEEeCCC
Q 044253 78 ---------NYRNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 78 ---------~~~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
.+..+++.+.++|+|||++++....
T Consensus 241 ~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 241 HGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp TCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 2456788888999999997775443
No 21
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=99.26 E-value=1.8e-11 Score=104.30 Aligned_cols=91 Identities=18% Similarity=0.232 Sum_probs=76.7
Q ss_pred Cchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253 3 FNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---- 76 (139)
Q Consensus 3 ~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---- 76 (139)
|+++++..++ +|++||+|+.+++.|++|++.+|+. ++++++++|+.++++.. .+ +||+|++|++.
T Consensus 553 ~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~------~~---~fD~Ii~DPP~f~~~ 623 (703)
T 3v97_A 553 ATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA------NE---QFDLIFIDPPTFSNS 623 (703)
T ss_dssp HHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC------CC---CEEEEEECCCSBC--
T ss_pred HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc------CC---CccEEEECCccccCC
Confidence 5677776666 5999999999999999999999996 68999999999987653 46 89999999964
Q ss_pred ----------cchHHHHHHHhhcccCCeEEEEeCCC
Q 044253 77 ----------DNYRNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 77 ----------~~~~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
..|..++..+.++|+|||++++....
T Consensus 624 ~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 624 KRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp -----CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 13566788888999999999987655
No 22
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=99.26 E-value=2.3e-11 Score=96.96 Aligned_cols=92 Identities=23% Similarity=0.281 Sum_probs=75.3
Q ss_pred Cchhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----
Q 044253 3 FNLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----- 76 (139)
Q Consensus 3 ~~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----- 76 (139)
|++..+..+ .+|+++|+|+.+++.|++|++.+|+.++++++++|+.+.+..+..+ .. +||+|++|++.
T Consensus 231 ~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~---~~---~fD~Vi~dpP~~~~~~ 304 (396)
T 2as0_A 231 FAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GE---KFDIVVLDPPAFVQHE 304 (396)
T ss_dssp HHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TC---CEEEEEECCCCSCSSG
T ss_pred HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh---CC---CCCEEEECCCCCCCCH
Confidence 556667664 4899999999999999999999998668999999999987654322 35 89999999975
Q ss_pred -------cchHHHHHHHhhcccCCeEEEEeC
Q 044253 77 -------DNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 77 -------~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
..+..++..+.++|+|||++++..
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 335 (396)
T 2as0_A 305 KDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 335 (396)
T ss_dssp GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 345677888899999999887653
No 23
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=99.25 E-value=2.7e-11 Score=96.26 Aligned_cols=91 Identities=23% Similarity=0.311 Sum_probs=75.1
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------ 76 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------ 76 (139)
|++..+....+|+++|+|+.+++.|++|++.+|+.+ ++++++|+.+.+..+... .. +||+|++|++.
T Consensus 223 ~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~---~~---~fD~Ii~dpP~~~~~~~ 295 (382)
T 1wxx_A 223 FALHLALGFREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKE---GE---RFDLVVLDPPAFAKGKK 295 (382)
T ss_dssp HHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHT---TC---CEEEEEECCCCSCCSTT
T ss_pred HHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhc---CC---CeeEEEECCCCCCCChh
Confidence 456666667799999999999999999999999864 999999999987654322 35 89999999975
Q ss_pred ------cchHHHHHHHhhcccCCeEEEEeC
Q 044253 77 ------DNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 77 ------~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
..+..++..+.++|+|||++++..
T Consensus 296 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 325 (382)
T 1wxx_A 296 DVERAYRAYKEVNLRAIKLLKEGGILATAS 325 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 345667888899999999998754
No 24
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=99.25 E-value=2.8e-11 Score=96.48 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=76.9
Q ss_pred Cchhhhhhh-cceeEEeCCccHHHHHHHHHHHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----
Q 044253 3 FNLESTFFI-YFIVAIDVSRESSETGLPIIKKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---- 76 (139)
Q Consensus 3 ~~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---- 76 (139)
|++..+..+ .+|+++|+|+++++.|++|++.+|+ .++++++++|+.+.+..+... .. +||+|++|++.
T Consensus 234 ~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~---~~---~fD~Ii~dpP~~~~~ 307 (396)
T 3c0k_A 234 FAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GE---KFDVIVMDPPKFVEN 307 (396)
T ss_dssp HHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHT---TC---CEEEEEECCSSTTTC
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhc---CC---CCCEEEECCCCCCCC
Confidence 567777764 5899999999999999999999998 668999999999987654321 25 89999999875
Q ss_pred --------cchHHHHHHHhhcccCCeEEEEeC
Q 044253 77 --------DNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 77 --------~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
..+..++..+.++|+|||++++..
T Consensus 308 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 308 KSQLMGACRGYKDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp SSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 456778888999999999998754
No 25
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=99.23 E-value=2.6e-11 Score=97.17 Aligned_cols=88 Identities=19% Similarity=0.135 Sum_probs=74.9
Q ss_pred Cchhhhhh--h-cceeEEeCCccHHHHHHHHHHHcCCCCc-EEEEeCChHHHHH-hhHHhhhcccCCCceeEEEEcCCCc
Q 044253 3 FNLESTFF--I-YFIVAIDVSRESSETGLPIIKKVEVDLK-INLMESRALPALD-QLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 3 ~~~~~~~~--~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~-i~~~~~da~~~l~-~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
|+++.+.. + .+|+++|+|+++++.+++|++.+|+.++ ++++++|+.+++. .. .. +||+|++||. .
T Consensus 66 ~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~---~fD~V~lDP~-g 135 (392)
T 3axs_A 66 RAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GF---GFDYVDLDPF-G 135 (392)
T ss_dssp HHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SS---CEEEEEECCS-S
T ss_pred HHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CC---CCcEEEECCC-c
Confidence 66777764 3 6899999999999999999999999777 9999999999886 54 35 8999999993 3
Q ss_pred chHHHHHHHhhcccCCeEEEEeC
Q 044253 78 NYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
....+++.+.++|++||++++..
T Consensus 136 ~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 136 TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCCEEEEEe
Confidence 45678899999999999998754
No 26
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.22 E-value=4e-11 Score=84.61 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=71.2
Q ss_pred hhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHH
Q 044253 6 ESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNY 82 (139)
Q Consensus 6 ~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~ 82 (139)
..+.. ..+|+++|+|+++++.|+++++..++.++++++++|+.+.++.. .. +||+|+++++. ..+...
T Consensus 48 ~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~---~fD~i~~~~~~~~~~~~~~ 118 (177)
T 2esr_A 48 EAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------TG---RFDLVFLDPPYAKETIVAT 118 (177)
T ss_dssp HHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------CS---CEEEEEECCSSHHHHHHHH
T ss_pred HHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh------cC---CCCEEEECCCCCcchHHHH
Confidence 33434 35899999999999999999999998778999999999876543 35 89999999874 334556
Q ss_pred HHHHh--hcccCCeEEEEeCCCC
Q 044253 83 RETLM--TLFKVGGIVIYDNTLW 103 (139)
Q Consensus 83 ~~~~~--~lL~~gG~ii~~~~~~ 103 (139)
++.+. ++|+|||++++.....
T Consensus 119 ~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 119 IEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHhCCCcCCCcEEEEEECCc
Confidence 67776 8999999999865443
No 27
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.22 E-value=2.6e-11 Score=88.08 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=71.0
Q ss_pred chhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCc-eeEEEEcCCC--cc
Q 044253 4 NLESTFFI-YFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFEN-FDYAFVDAHK--DN 78 (139)
Q Consensus 4 ~~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~-fD~If~D~~~--~~ 78 (139)
+++.+..+ .+|+++|+|+++++.|++|++.+++. ++++++++|+.+.+..+. .+ + ||+|++|++. ..
T Consensus 68 ~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~---~~fD~I~~~~~~~~~~ 139 (201)
T 2ift_A 68 GFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ-----NQ---PHFDVVFLDPPFHFNL 139 (201)
T ss_dssp HHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC-----SS---CCEEEEEECCCSSSCH
T ss_pred HHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc-----cC---CCCCEEEECCCCCCcc
Confidence 34433334 58999999999999999999999984 589999999988754321 25 7 9999999872 34
Q ss_pred hHHHHHHH--hhcccCCeEEEEeCCCCC
Q 044253 79 YRNYRETL--MTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 79 ~~~~~~~~--~~lL~~gG~ii~~~~~~~ 104 (139)
+...++.+ .++|+|||++++......
T Consensus 140 ~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 140 AEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred HHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 55677777 567999999998654443
No 28
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=99.21 E-value=3.7e-11 Score=96.23 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=72.4
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------ 76 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------ 76 (139)
|+++.+..+++|+++|+|+.+++.|++|++.+|+.. ++.++|+.+.++.+ .. .||+|++|++.
T Consensus 228 ~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~~---~fD~Ii~dpP~f~~~~~ 296 (393)
T 4dmg_A 228 FALRAARKGAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL------EG---PFHHVLLDPPTLVKRPE 296 (393)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC------CC---CEEEEEECCCCCCSSGG
T ss_pred HHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh------cC---CCCEEEECCCcCCCCHH
Confidence 677788778889999999999999999999999864 56699999987654 35 69999999975
Q ss_pred ------cchHHHHHHHhhcccCCeEEEEe
Q 044253 77 ------DNYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 77 ------~~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
..+..++..+.++|+|||++++.
T Consensus 297 ~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~ 325 (393)
T 4dmg_A 297 ELPAMKRHLVDLVREALRLLAEEGFLWLS 325 (393)
T ss_dssp GHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 24567888889999999999853
No 29
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.21 E-value=8.3e-11 Score=83.19 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=68.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHHH--h
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRETL--M 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~~--~ 87 (139)
.+|+++|+|+++++.|++|+...++.++++++++|+.+.+..+... .+ +||+|+++++. ......+..+ .
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~---~fD~i~~~~~~~~~~~~~~~~~l~~~ 141 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE---KL---QFDLVLLDPPYAKQEIVSQLEKMLER 141 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT---TC---CEEEEEECCCGGGCCHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc---CC---CCCEEEECCCCCchhHHHHHHHHHHh
Confidence 6899999999999999999999998778999999999876543211 25 89999999873 3445667766 7
Q ss_pred hcccCCeEEEEeCCC
Q 044253 88 TLFKVGGIVIYDNTL 102 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~ 102 (139)
++|+|||++++....
T Consensus 142 ~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 142 QLLTNEAVIVCETDK 156 (187)
T ss_dssp TCEEEEEEEEEEEET
T ss_pred cccCCCCEEEEEeCC
Confidence 889999999986443
No 30
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.21 E-value=3.5e-11 Score=93.24 Aligned_cols=79 Identities=15% Similarity=0.232 Sum_probs=70.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|+++|+|+++++.||++++..|+ ++++++++|+.++ + .. +||+||+++...+...+++.+.+.
T Consensus 145 ~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~--------d~---~FDvV~~~a~~~d~~~~l~el~r~ 211 (298)
T 3fpf_A 145 YGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D--------GL---EFDVLMVAALAEPKRRVFRNIHRY 211 (298)
T ss_dssp TCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G--------GC---CCSEEEECTTCSCHHHHHHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C--------CC---CcCEEEECCCccCHHHHHHHHHHH
Confidence 478999999999999999999999999 7999999999874 2 35 899999988777788999999999
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
|+|||++++.+.
T Consensus 212 LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 212 VDTETRIIYRTY 223 (298)
T ss_dssp CCTTCEEEEEEC
T ss_pred cCCCcEEEEEcC
Confidence 999999999764
No 31
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.20 E-value=5.9e-11 Score=86.25 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=68.4
Q ss_pred hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHH
Q 044253 5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRN 81 (139)
Q Consensus 5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~ 81 (139)
++.+..+ .+|+++|+|+++++.|++|++.+++ ++++++++|+.+.++.. .. +||+|++|++ ...+..
T Consensus 70 ~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~------~~---~fD~V~~~~p~~~~~~~~ 139 (202)
T 2fpo_A 70 LEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK------GT---PHNIVFVDPPFRRGLLEE 139 (202)
T ss_dssp HHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC------CC---CEEEEEECCSSSTTTHHH
T ss_pred HHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc------CC---CCCEEEECCCCCCCcHHH
Confidence 4333344 4899999999999999999999998 68999999999876432 35 8999999987 234556
Q ss_pred HHHHHhh--cccCCeEEEEeCC
Q 044253 82 YRETLMT--LFKVGGIVIYDNT 101 (139)
Q Consensus 82 ~~~~~~~--lL~~gG~ii~~~~ 101 (139)
.++.+.+ +|+|||++++...
T Consensus 140 ~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 140 TINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHHHhcCccCCCcEEEEEEC
Confidence 6777754 5999999988644
No 32
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.17 E-value=1.2e-10 Score=81.08 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=71.2
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHHHH
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRNYR 83 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~~~ 83 (139)
+..+..+.+|+++|+|+++++.|++|+...++ +++++++|+.+.++....+ .+ +||+|+++++. ......+
T Consensus 57 ~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---~~---~~D~i~~~~~~~~~~~~~~ 128 (171)
T 1ws6_A 57 LEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQ---GE---RFTVAFMAPPYAMDLAALF 128 (171)
T ss_dssp HHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHT---TC---CEEEEEECCCTTSCTTHHH
T ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhcc---CC---ceEEEEECCCCchhHHHHH
Confidence 34455566799999999999999999999887 7999999999876554321 24 79999999764 4456677
Q ss_pred HHHh--hcccCCeEEEEeCCCC
Q 044253 84 ETLM--TLFKVGGIVIYDNTLW 103 (139)
Q Consensus 84 ~~~~--~lL~~gG~ii~~~~~~ 103 (139)
+.+. ++|+|||++++.....
T Consensus 129 ~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 129 GELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHHHHHTCEEEEEEEEEEEETT
T ss_pred HHHHhhcccCCCcEEEEEeCCc
Confidence 7777 9999999999864433
No 33
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.17 E-value=5.7e-11 Score=86.61 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=71.7
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHH
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRE 84 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~ 84 (139)
+..+..+.+|+++|+|+++++.|+++++.+|+.++++++++|+.+.+.. .. +||+|++++.. ... +++
T Consensus 71 ~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-------~~---~~D~v~~~~~~-~~~-~l~ 138 (204)
T 3njr_A 71 VEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-------LP---LPEAVFIGGGG-SQA-LYD 138 (204)
T ss_dssp HHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-------SC---CCSEEEECSCC-CHH-HHH
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-------CC---CCCEEEECCcc-cHH-HHH
Confidence 4455557899999999999999999999999976899999999875433 25 79999999854 445 899
Q ss_pred HHhhcccCCeEEEEeCCC
Q 044253 85 TLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~~~ 102 (139)
.+.+.|+|||++++....
T Consensus 139 ~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 139 RLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp HHHHHSCTTCEEEEEECS
T ss_pred HHHHhcCCCcEEEEEecC
Confidence 999999999999986543
No 34
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.15 E-value=3.2e-11 Score=91.97 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=74.8
Q ss_pred CCchhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253 2 PFNLESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR 80 (139)
Q Consensus 2 ~~~~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~ 80 (139)
.|+++.+..+. +|+++|+|+++++.|++|++.+++.++++++++|+.+... .. +||+|++|++. ...
T Consensus 138 ~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~---~fD~Vi~~~p~-~~~ 205 (278)
T 2frn_A 138 HLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------EN---IADRILMGYVV-RTH 205 (278)
T ss_dssp TTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CS---CEEEEEECCCS-SGG
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cC---CccEEEECCch-hHH
Confidence 46778887776 5999999999999999999999998789999999987643 25 89999999874 345
Q ss_pred HHHHHHhhcccCCeEEEEeCCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
.+++.+.+.|+|||++++....
T Consensus 206 ~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 206 EFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp GGHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHCCCCeEEEEEEee
Confidence 6788899999999999975443
No 35
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.13 E-value=7e-11 Score=88.76 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=65.6
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---------------
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------------- 77 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------------- 77 (139)
+|+++|+++++++.|++|+..+++.++++++++|+.+....+. .+ +||+|+++++..
T Consensus 74 ~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~-----~~---~fD~Ii~npPy~~~~~~~~~~~~~~~~ 145 (259)
T 3lpm_A 74 KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIP-----KE---RADIVTCNPPYFATPDTSLKNTNEHFR 145 (259)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSC-----TT---CEEEEEECCCC----------------
T ss_pred cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhc-----cC---CccEEEECCCCCCCccccCCCCchHHH
Confidence 8999999999999999999999998899999999988743221 25 899999987642
Q ss_pred --------chHHHHHHHhhcccCCeEEEE
Q 044253 78 --------NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 78 --------~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.+..+++.+.++|+|||++++
T Consensus 146 ~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 146 IARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp -------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 124578888899999999987
No 36
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.13 E-value=7.7e-11 Score=85.12 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=69.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|+++|+|+++++.|+++++..|+ ++++++++|+.+.+.. .. +||+|+++.....+..+++.+.+.|+
T Consensus 65 ~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-------~~---~~D~i~~~~~~~~~~~~l~~~~~~Lk 133 (204)
T 3e05_A 65 GRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDD-------LP---DPDRVFIGGSGGMLEEIIDAVDRRLK 133 (204)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTT-------SC---CCSEEEESCCTTCHHHHHHHHHHHCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhc-------CC---CCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 7899999999999999999999998 6899999999765432 25 89999999876678889999999999
Q ss_pred CCeEEEEeCC
Q 044253 92 VGGIVIYDNT 101 (139)
Q Consensus 92 ~gG~ii~~~~ 101 (139)
|||++++...
T Consensus 134 pgG~l~~~~~ 143 (204)
T 3e05_A 134 SEGVIVLNAV 143 (204)
T ss_dssp TTCEEEEEEC
T ss_pred CCeEEEEEec
Confidence 9999998643
No 37
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=99.11 E-value=1.3e-10 Score=89.98 Aligned_cols=103 Identities=12% Similarity=0.162 Sum_probs=76.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHH--cCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKK--VEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYR 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~--~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~ 80 (139)
..+|++||+|+++++.|++++.. .++ .++++++++|+.++++.. .+ +||+|++|+... ...
T Consensus 119 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~l~~~ 189 (304)
T 2o07_A 119 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------QD---AFDVIITDSSDPMGPAESLFKE 189 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------SS---CEEEEEEECC-----------C
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------CC---CceEEEECCCCCCCcchhhhHH
Confidence 36899999999999999999876 354 468999999999987653 46 899999997532 234
Q ss_pred HHHHHHhhcccCCeEEEEeCC-CCCcccccccccCchhhhhchHHHHHHHHHHhhC
Q 044253 81 NYRETLMTLFKVGGIVIYDNT-LWGGTVAMAEEQVPEILRSTRQPNWNLDKLFASS 135 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (139)
.+++.+.++|+|||++++++. .|.. ....+.++++++.+..+
T Consensus 190 ~~l~~~~~~LkpgG~lv~~~~~~~~~-------------~~~~~~~~~~l~~~f~~ 232 (304)
T 2o07_A 190 SYYQLMKTALKEDGVLCCQGECQWLH-------------LDLIKEMRQFCQSLFPV 232 (304)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECTTTC-------------HHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHhccCCCeEEEEecCCcccc-------------hHHHHHHHHHHHHhCCC
Confidence 678899999999999999763 3321 13455667777666543
No 38
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.06 E-value=1.5e-10 Score=82.15 Aligned_cols=85 Identities=12% Similarity=0.051 Sum_probs=65.2
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--------
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-------- 76 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-------- 76 (139)
+..+..+.+|+++|+|+++++.|+++++..|+ +++++++++.... .... .+ +||+|+++.+.
T Consensus 38 ~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l-~~~~-----~~---~fD~v~~~~~~~~~~~~~~ 107 (185)
T 3mti_A 38 AFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENL-DHYV-----RE---PIRAAIFNLGYLPSADKSV 107 (185)
T ss_dssp HHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGG-GGTC-----CS---CEEEEEEEEC---------
T ss_pred HHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHH-Hhhc-----cC---CcCEEEEeCCCCCCcchhc
Confidence 34444578999999999999999999999998 6899999877654 2221 35 89999988321
Q ss_pred ----cchHHHHHHHhhcccCCeEEEEe
Q 044253 77 ----DNYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 77 ----~~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
......++.+.++|+|||++++.
T Consensus 108 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 108 ITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp --CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 12235678888999999999874
No 39
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.06 E-value=8.3e-10 Score=77.81 Aligned_cols=83 Identities=22% Similarity=0.189 Sum_probs=70.6
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
+....+|+++|+|+++++.|++++...+..++++++++|+.+.++. .. +||+|+++........+++.+.
T Consensus 52 ~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~---~~D~v~~~~~~~~~~~~l~~~~ 121 (192)
T 1l3i_A 52 AGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-------IP---DIDIAVVGGSGGELQEILRIIK 121 (192)
T ss_dssp HTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-------SC---CEEEEEESCCTTCHHHHHHHHH
T ss_pred HHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-------CC---CCCEEEECCchHHHHHHHHHHH
Confidence 3334789999999999999999999999867899999999875432 25 8999999987667788999999
Q ss_pred hcccCCeEEEEeC
Q 044253 88 TLFKVGGIVIYDN 100 (139)
Q Consensus 88 ~lL~~gG~ii~~~ 100 (139)
++|+|||.+++..
T Consensus 122 ~~l~~gG~l~~~~ 134 (192)
T 1l3i_A 122 DKLKPGGRIIVTA 134 (192)
T ss_dssp HTEEEEEEEEEEE
T ss_pred HhcCCCcEEEEEe
Confidence 9999999999854
No 40
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=99.06 E-value=2.7e-10 Score=88.71 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=64.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------cch-H
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------DNY-R 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------~~~-~ 80 (139)
..+|++||+|+++++.|++++... ++ .++++++++|+.+.++.. .+ +||+|++|+.. ..+ .
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~l~t~ 202 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------KN---EFDVIITDSSDPVGPAESLFGQ 202 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------TT---CEEEEEECCC------------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------CC---CceEEEEcCCCCCCcchhhhHH
Confidence 468999999999999999998754 44 468999999999987642 46 89999999832 112 5
Q ss_pred HHHHHHhhcccCCeEEEEeC
Q 044253 81 NYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+++.+.++|+|||++++++
T Consensus 203 ~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 203 SYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp -HHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHhhcCCCeEEEEEC
Confidence 78889999999999999876
No 41
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.05 E-value=2.8e-10 Score=86.56 Aligned_cols=87 Identities=11% Similarity=0.131 Sum_probs=72.9
Q ss_pred CCchhhhhhh--cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253 2 PFNLESTFFI--YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY 79 (139)
Q Consensus 2 ~~~~~~~~~~--~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~ 79 (139)
.|+++.+... .+|+++|+|+++++.|++|++.+++. +++++++|+.+. +. .. +||+|++|++. .+
T Consensus 132 ~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~-~~-------~~---~~D~Vi~d~p~-~~ 198 (272)
T 3a27_A 132 YFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDV-EL-------KD---VADRVIMGYVH-KT 198 (272)
T ss_dssp TTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGC-CC-------TT---CEEEEEECCCS-SG
T ss_pred HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHc-Cc-------cC---CceEEEECCcc-cH
Confidence 4677777764 49999999999999999999999985 689999999876 32 25 89999999986 56
Q ss_pred HHHHHHHhhcccCCeEEEEeCC
Q 044253 80 RNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
..++..+.+.|+|||++++...
T Consensus 199 ~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 199 HKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp GGGHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEEc
Confidence 6788888999999999987543
No 42
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.04 E-value=7.1e-10 Score=82.24 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=67.4
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
..+.+|++||+|+++++.|+++++..|+. +++++++|+.+....... .+ +||+|+++.. ..+..+++.+.+
T Consensus 92 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~----~~---~fD~V~~~~~-~~~~~~l~~~~~ 162 (240)
T 1xdz_A 92 FPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDV----RE---SYDIVTARAV-ARLSVLSELCLP 162 (240)
T ss_dssp CTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTT----TT---CEEEEEEECC-SCHHHHHHHHGG
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccc----cC---CccEEEEecc-CCHHHHHHHHHH
Confidence 45678999999999999999999999985 599999999875311000 25 8999999874 567889999999
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
+|+|||++++.
T Consensus 163 ~LkpgG~l~~~ 173 (240)
T 1xdz_A 163 LVKKNGLFVAL 173 (240)
T ss_dssp GEEEEEEEEEE
T ss_pred hcCCCCEEEEE
Confidence 99999999874
No 43
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.04 E-value=5.7e-10 Score=87.55 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=69.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYR 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~ 80 (139)
..+|++||+|+++++.|++++... |+ .++++++++|+.++++... .+ +||+|++|+... .+.
T Consensus 144 ~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~-----~~---~fDlIi~d~~~p~~~~~~l~~~ 215 (334)
T 1xj5_A 144 IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-----EG---SYDAVIVDSSDPIGPAKELFEK 215 (334)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-----TT---CEEEEEECCCCTTSGGGGGGSH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhcc-----CC---CccEEEECCCCccCcchhhhHH
Confidence 468999999999999999998763 55 3689999999999876532 35 899999987421 146
Q ss_pred HHHHHHhhcccCCeEEEEe-CCCCCc
Q 044253 81 NYRETLMTLFKVGGIVIYD-NTLWGG 105 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~-~~~~~~ 105 (139)
.+++.+.++|+|||+++++ +..|.+
T Consensus 216 ~~l~~~~~~LkpgG~lv~~~~~~~~~ 241 (334)
T 1xj5_A 216 PFFQSVARALRPGGVVCTQAESLWLH 241 (334)
T ss_dssp HHHHHHHHHEEEEEEEEEECCCTTTC
T ss_pred HHHHHHHHhcCCCcEEEEecCCcccc
Confidence 7899999999999999997 555543
No 44
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.02 E-value=3e-10 Score=83.17 Aligned_cols=84 Identities=19% Similarity=0.151 Sum_probs=65.9
Q ss_pred hhhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----
Q 044253 5 LESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----- 78 (139)
Q Consensus 5 ~~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----- 78 (139)
+..+.. ..+|+++|+|+++++.|++|+..+++ +++++++|+... ..+. ++ +||+|+++++...
T Consensus 72 ~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~-~~~~-----~~---~fD~I~~npp~~~~~~~~ 140 (230)
T 3evz_A 72 LMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGII-KGVV-----EG---TFDVIFSAPPYYDKPLGR 140 (230)
T ss_dssp HHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSS-TTTC-----CS---CEEEEEECCCCC------
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhh-hhcc-----cC---ceeEEEECCCCcCCcccc
Confidence 344444 68999999999999999999999998 799999997432 1221 35 8999999975321
Q ss_pred -----------------hHHHHHHHhhcccCCeEEEEe
Q 044253 79 -----------------YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 -----------------~~~~~~~~~~lL~~gG~ii~~ 99 (139)
+..+++.+.++|+|||++++-
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 141 VLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp ---------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 366788899999999999873
No 45
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.02 E-value=6.1e-10 Score=84.96 Aligned_cols=81 Identities=11% Similarity=0.247 Sum_probs=66.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------hH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------YR 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------~~ 80 (139)
..+|++||+|+++++.|++++... ++ .++++++++|+.++++.. .+ +||+|++|+.... ..
T Consensus 99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~l~~~ 169 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------EN---QYDVIMVDSTEPVGPAVNLFTK 169 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------CS---CEEEEEESCSSCCSCCCCCSTT
T ss_pred CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------CC---CeeEEEECCCCCCCcchhhhHH
Confidence 468999999999999999998652 44 468999999999987653 35 8999999975321 25
Q ss_pred HHHHHHhhcccCCeEEEEeC
Q 044253 81 NYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+++.+.+.|+|||++++..
T Consensus 170 ~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 170 GFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp HHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCcEEEEEc
Confidence 78899999999999999864
No 46
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=99.02 E-value=3.5e-10 Score=88.47 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=72.2
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN 81 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~ 81 (139)
+|+++ +..+.+|+++|+|+.+++.|++|++.+|+.++++++++|+.+++ . +||+|++|++.. ...
T Consensus 208 ~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~---~fD~Vi~dpP~~-~~~ 272 (336)
T 2yx1_A 208 PFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----------V---KGNRVIMNLPKF-AHK 272 (336)
T ss_dssp HHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----------C---CEEEEEECCTTT-GGG
T ss_pred HHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----------C---CCcEEEECCcHh-HHH
Confidence 36677 66677999999999999999999999999778999999998763 3 799999998643 346
Q ss_pred HHHHHhhcccCCeEEEEeCCC
Q 044253 82 YRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~~~ 102 (139)
+++.+.++|++||++++....
T Consensus 273 ~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 273 FIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp GHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCCEEEEEEee
Confidence 788889999999998875443
No 47
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.01 E-value=4.1e-10 Score=78.97 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=66.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++|+|+++++.|++++...++.+++ ++++|+.+.++.. .+ +||+|++...... ..+++.+.+.|
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~------~~---~~D~i~~~~~~~~-~~~l~~~~~~L 117 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV------PD---NPDVIFIGGGLTA-PGVFAAAWKRL 117 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC------CS---CCSEEEECC-TTC-TTHHHHHHHTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc------CC---CCCEEEECCcccH-HHHHHHHHHhc
Confidence 678999999999999999999999987688 8889987654321 25 8999999876543 66889999999
Q ss_pred cCCeEEEEeCCC
Q 044253 91 KVGGIVIYDNTL 102 (139)
Q Consensus 91 ~~gG~ii~~~~~ 102 (139)
+|||++++....
T Consensus 118 ~~gG~l~~~~~~ 129 (178)
T 3hm2_A 118 PVGGRLVANAVT 129 (178)
T ss_dssp CTTCEEEEEECS
T ss_pred CCCCEEEEEeec
Confidence 999999986543
No 48
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=99.00 E-value=1.1e-09 Score=87.17 Aligned_cols=86 Identities=14% Similarity=0.058 Sum_probs=70.9
Q ss_pred chhhhhh--hcceeEEeCCccHHHHHHHHHHHc---------------CCCCcEEEEeCChHHHHHhhHHhhhcccCCCc
Q 044253 4 NLESTFF--IYFIVAIDVSRESSETGLPIIKKV---------------EVDLKINLMESRALPALDQLLKDEKIHFFFEN 66 (139)
Q Consensus 4 ~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~---------------g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~ 66 (139)
++..+.. ..+|+++|+|+++++.|++|++.+ |+. +++++++|+.+.+... .. +
T Consensus 62 ~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~~~~------~~---~ 131 (378)
T 2dul_A 62 GIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLMAER------HR---Y 131 (378)
T ss_dssp HHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHHHHS------TT---C
T ss_pred HHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHHHhc------cC---C
Confidence 4555554 357999999999999999999999 875 4999999999987643 25 7
Q ss_pred eeEEEEcCCCcchHHHHHHHhhcccCCeEEEEeC
Q 044253 67 FDYAFVDAHKDNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 67 fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
||+|++||.. ....+++.+.+.|++||++++..
T Consensus 132 fD~I~lDP~~-~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 132 FHFIDLDPFG-SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp EEEEEECCSS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEeCCCC-CHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999999853 34678899999999999988754
No 49
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.00 E-value=8e-10 Score=86.31 Aligned_cols=82 Identities=9% Similarity=0.023 Sum_probs=66.2
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRNY 82 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~~ 82 (139)
...+|++||+|+++++.||+++...+ .++++++++|+.+++.... .+ +||+|++|.... ....+
T Consensus 112 p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~-----~~---~fDvIi~D~~~~~~~~~~L~t~ef 182 (317)
T 3gjy_A 112 PQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFT-----PA---SRDVIIRDVFAGAITPQNFTTVEF 182 (317)
T ss_dssp TTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCC-----TT---CEEEEEECCSTTSCCCGGGSBHHH
T ss_pred CCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhcc-----CC---CCCEEEECCCCccccchhhhHHHH
Confidence 35689999999999999999986443 4689999999999986542 35 899999986321 12678
Q ss_pred HHHHhhcccCCeEEEEeC
Q 044253 83 RETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~ 100 (139)
++.+.++|+|||++++..
T Consensus 183 l~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 183 FEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEe
Confidence 999999999999999764
No 50
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=98.99 E-value=1.6e-09 Score=81.44 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=66.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
...+|+++|+|+++++.|++|++.+|+. +++++++|+.+....... .+ +||+|++... ..+..+++.+.++
T Consensus 103 ~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~----~~---~fD~I~s~a~-~~~~~ll~~~~~~ 173 (249)
T 3g89_A 103 PELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGH----RE---AYARAVARAV-APLCVLSELLLPF 173 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTT----TT---CEEEEEEESS-CCHHHHHHHHGGG
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhccccc----CC---CceEEEECCc-CCHHHHHHHHHHH
Confidence 3679999999999999999999999995 599999999886321000 25 8999999864 3567889999999
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
|+|||++++
T Consensus 174 LkpgG~l~~ 182 (249)
T 3g89_A 174 LEVGGAAVA 182 (249)
T ss_dssp EEEEEEEEE
T ss_pred cCCCeEEEE
Confidence 999999886
No 51
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.99 E-value=3.5e-09 Score=80.40 Aligned_cols=85 Identities=21% Similarity=0.270 Sum_probs=68.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------------- 77 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------------- 77 (139)
.+|+++|+|+.+++.+++|++..|+. +++++++|+......+... .. +||+|++|++..
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~---~~---~fD~Vl~d~Pcs~~g~~~~~p~~~~~ 181 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKN---EI---FFDKILLDAPCSGNIIKDKNRNVSEE 181 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHT---TC---CEEEEEEEECCC------------HH
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhc---cc---cCCEEEEcCCCCCCcccccCCCCCHH
Confidence 78999999999999999999999985 7999999998875432111 25 899999997542
Q ss_pred -------chHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 78 -------NYRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 78 -------~~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
....+++.+.++|+|||++++.....
T Consensus 182 ~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 182 DIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp HHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 23567888889999999999865433
No 52
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.98 E-value=8.4e-10 Score=84.98 Aligned_cols=80 Identities=11% Similarity=0.183 Sum_probs=64.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHH--cCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------ch
Q 044253 11 IYFIVAIDVSRESSETGLPIIKK--VEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------NY 79 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~--~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~~ 79 (139)
..+|++||+|+++++.|++++.. .++ .++++++++|+.++++.. .+ +||+|++|+... ..
T Consensus 114 ~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~~l~~ 184 (296)
T 1inl_A 114 VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------KN---EFDVIIIDSTDPTAGQGGHLFT 184 (296)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------SS---CEEEEEEEC----------CCS
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------CC---CceEEEEcCCCcccCchhhhhH
Confidence 46899999999999999999865 334 468999999999876542 35 899999997533 23
Q ss_pred HHHHHHHhhcccCCeEEEEe
Q 044253 80 RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~ 99 (139)
..+++.+.++|+|||++++.
T Consensus 185 ~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 185 EEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEE
Confidence 67889999999999999986
No 53
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.98 E-value=5.6e-10 Score=79.91 Aligned_cols=80 Identities=9% Similarity=0.087 Sum_probs=65.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------------cch
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------------DNY 79 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------------~~~ 79 (139)
.+|+++|+|+++++.|+++++..|+.++++++++|+.+..... .+ +||+|+++++. ..+
T Consensus 48 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~---~fD~v~~~~~~~~~~~~~~~~~~~~~ 118 (197)
T 3eey_A 48 GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI------DC---PVKAVMFNLGYLPSGDHSISTRPETT 118 (197)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC------CS---CEEEEEEEESBCTTSCTTCBCCHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc------cC---CceEEEEcCCcccCcccccccCcccH
Confidence 5899999999999999999999998778999999997763222 35 89999998743 023
Q ss_pred HHHHHHHhhcccCCeEEEEeC
Q 044253 80 RNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~~ 100 (139)
..+++.+.++|+|||++++..
T Consensus 119 ~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 119 IQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhCcCCCEEEEEE
Confidence 468889999999999998753
No 54
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.97 E-value=1.9e-09 Score=83.63 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=66.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHH--cC-C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKK--VE-V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------- 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~--~g-~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------- 78 (139)
..+|++||+|+++++.|++++.. .+ + .++++++++|+.++++.. .+ +||+|++|.....
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~~~~ 171 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------EE---RYDVVIIDLTDPVGEDNPARL 171 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------CC---CEEEEEEECCCCBSTTCGGGG
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc------CC---CccEEEECCCCcccccCcchh
Confidence 46899999999999999999875 23 3 468999999999987643 46 8999999975433
Q ss_pred --hHHHHHHHhhcccCCeEEEEe
Q 044253 79 --YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 --~~~~~~~~~~lL~~gG~ii~~ 99 (139)
...+++.+.+.|+|||++++.
T Consensus 172 l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 172 LYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp GSSHHHHHHHHHTEEEEEEEEEE
T ss_pred ccHHHHHHHHHHhcCCCcEEEEE
Confidence 467899999999999999985
No 55
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=98.97 E-value=4.8e-10 Score=84.59 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=66.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHH---cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKK---VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---------- 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~---~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---------- 77 (139)
..+|++||+++++++.|++|+.. +++.++++++++|+.+.+.......-... +||+|+++++..
T Consensus 60 ~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~---~fD~Vv~nPPy~~~~~~~~~~~ 136 (260)
T 2ozv_A 60 KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE---HFHHVIMNPPYNDAGDRRTPDA 136 (260)
T ss_dssp TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT---CEEEEEECCCC-----------
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC---CcCEEEECCCCcCCCCCCCcCH
Confidence 47899999999999999999998 88877899999999876432100000025 899999997542
Q ss_pred -----------chHHHHHHHhhcccCCeEEEE
Q 044253 78 -----------NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 78 -----------~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.+..+++.+.++|+|||++++
T Consensus 137 ~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 137 LKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp ----------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 245678888899999999986
No 56
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.97 E-value=7.4e-10 Score=82.35 Aligned_cols=86 Identities=16% Similarity=0.077 Sum_probs=68.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------chHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------NYRNY 82 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~~~~~ 82 (139)
..++++||+|+++++.|+++....+ .+++++.+|+...+..+. .. +||.|+.|+... +...+
T Consensus 83 ~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~-----~~---~FD~i~~D~~~~~~~~~~~~~~~~~ 152 (236)
T 3orh_A 83 IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-----DG---HFDGILYDTYPLSEETWHTHQFNFI 152 (236)
T ss_dssp EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC-----TT---CEEEEEECCCCCBGGGTTTHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhccccc-----cc---CCceEEEeeeecccchhhhcchhhh
Confidence 3579999999999999999988776 468999999998865543 45 899999997321 24567
Q ss_pred HHHHhhcccCCeEEEEeCCCCCcc
Q 044253 83 RETLMTLFKVGGIVIYDNTLWGGT 106 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~~~~~~ 106 (139)
++.+.++|||||++++.+....+.
T Consensus 153 ~~e~~rvLkPGG~l~f~~~~~~~~ 176 (236)
T 3orh_A 153 KNHAFRLLKPGGVLTYCNLTSWGE 176 (236)
T ss_dssp HHTHHHHEEEEEEEEECCHHHHHH
T ss_pred hhhhhheeCCCCEEEEEecCCchh
Confidence 888999999999999877554443
No 57
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.97 E-value=1.5e-09 Score=83.05 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=68.8
Q ss_pred hhhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCce---eEEEEcCCCcch-
Q 044253 5 LESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENF---DYAFVDAHKDNY- 79 (139)
Q Consensus 5 ~~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~f---D~If~D~~~~~~- 79 (139)
+..+.. ..+|+++|+|+++++.|++|++.+|+.++++++++|+.+.+ .+ +| |+|++++++...
T Consensus 139 ~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~---------~~---~f~~~D~IvsnPPyi~~~ 206 (284)
T 1nv8_A 139 VSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---------KE---KFASIEMILSNPPYVKSS 206 (284)
T ss_dssp HHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---------GG---GTTTCCEEEECCCCBCGG
T ss_pred HHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc---------cc---ccCCCCEEEEcCCCCCcc
Confidence 333444 67999999999999999999999999878999999998743 23 67 999999764311
Q ss_pred ---------------------HHHHHHHh-hcccCCeEEEEeCCC
Q 044253 80 ---------------------RNYRETLM-TLFKVGGIVIYDNTL 102 (139)
Q Consensus 80 ---------------------~~~~~~~~-~lL~~gG~ii~~~~~ 102 (139)
..+++.+. +.|+|||+++++...
T Consensus 207 ~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 207 AHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp GSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred cccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 15788888 999999999986443
No 58
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=98.95 E-value=1.9e-09 Score=81.08 Aligned_cols=85 Identities=12% Similarity=0.052 Sum_probs=70.5
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHH
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYR 83 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~ 83 (139)
++..+..+.+|+++|+|+.+++.|++|+..+++. ++++++|+.+.++ .. +||+|+++........++
T Consensus 135 ~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~--------~~---~fD~Vv~n~~~~~~~~~l 201 (254)
T 2nxc_A 135 AIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--------FG---PFDLLVANLYAELHAALA 201 (254)
T ss_dssp HHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--------GC---CEEEEEEECCHHHHHHHH
T ss_pred HHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc--------CC---CCCEEEECCcHHHHHHHH
Confidence 3445555669999999999999999999999885 9999999987532 35 899999987665567788
Q ss_pred HHHhhcccCCeEEEEeCC
Q 044253 84 ETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~~ 101 (139)
..+.++|+|||++++...
T Consensus 202 ~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 202 PRYREALVPGGRALLTGI 219 (254)
T ss_dssp HHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHcCCCCEEEEEee
Confidence 889999999999998644
No 59
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.94 E-value=2.2e-09 Score=84.14 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=69.2
Q ss_pred chhhhhhh---cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--
Q 044253 4 NLESTFFI---YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-- 78 (139)
Q Consensus 4 ~~~~~~~~---~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-- 78 (139)
.++.+... .+++++|+|+++++.|++|++.+|+. +++++++|+.+.... .. +||+|++|++...
T Consensus 218 ~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~-------~~---~~D~Ii~npPyg~r~ 286 (354)
T 3tma_A 218 ALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRF-------FP---EVDRILANPPHGLRL 286 (354)
T ss_dssp HHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGT-------CC---CCSEEEECCCSCC--
T ss_pred HHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCccc-------cC---CCCEEEECCCCcCcc
Confidence 34556555 79999999999999999999999997 899999999886321 35 7999999987531
Q ss_pred ---------hHHHHHHHhhcccCCeEEEEe
Q 044253 79 ---------YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ---------~~~~~~~~~~lL~~gG~ii~~ 99 (139)
|..+++.+.++|+|||.+++-
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~ 316 (354)
T 3tma_A 287 GRKEGLFHLYWDFLRGALALLPPGGRVALL 316 (354)
T ss_dssp --CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred CCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 356777888999999998874
No 60
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.93 E-value=1.3e-09 Score=86.11 Aligned_cols=90 Identities=11% Similarity=0.126 Sum_probs=67.0
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh------h---cccCCCceeEEEEc
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE------K---IHFFFENFDYAFVD 73 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~------~---~~~~~~~fD~If~D 73 (139)
|+++.|....+|+++|+|+++++.|++|++.+|+ ++++++++|+.+.++.+.... + ... +||+|++|
T Consensus 227 ~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~---~fD~Vv~d 302 (369)
T 3bt7_A 227 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY---QCETIFVD 302 (369)
T ss_dssp HHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGC---CEEEEEEC
T ss_pred HHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHHHhhccccccccccccccC---CCCEEEEC
Confidence 5677777778999999999999999999999998 589999999999876542100 0 003 69999999
Q ss_pred CCCcchHHHHHHHhhcccCCeEEEEe
Q 044253 74 AHKDNYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 74 ~~~~~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
|+.... .+.+.+.|+++|.+++-
T Consensus 303 PPr~g~---~~~~~~~l~~~g~ivyv 325 (369)
T 3bt7_A 303 PPRSGL---DSETEKMVQAYPRILYI 325 (369)
T ss_dssp CCTTCC---CHHHHHHHTTSSEEEEE
T ss_pred cCcccc---HHHHHHHHhCCCEEEEE
Confidence 986432 23345556678887753
No 61
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.92 E-value=5.2e-09 Score=85.30 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=66.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------- 78 (139)
.+|+++|+|+++++.+++|++.+|+. +++++++|+....... .+ +||+|++|++...
T Consensus 131 g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~------~~---~FD~Il~DaPCSg~G~~rr~p~~~~~ 200 (456)
T 3m4x_A 131 GLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHF------SG---FFDRIVVDAPCSGEGMFRKDPNAIKE 200 (456)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHH------TT---CEEEEEEECCCCCGGGTTTCHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhc------cc---cCCEEEECCCCCCccccccCHHHhhh
Confidence 58999999999999999999999995 6999999999875433 36 8999999987421
Q ss_pred ------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 79 ------------YRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 79 ------------~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
...+++.+.++|+|||++++....+
T Consensus 201 ~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 201 WTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 1256778889999999999754433
No 62
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.92 E-value=3e-09 Score=81.17 Aligned_cols=81 Identities=7% Similarity=0.034 Sum_probs=68.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------------cc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------------DN 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------------~~ 78 (139)
+.+|+++|+|+++++.|++++...|+.++++++++|+.+. .+ +||+|++.... ..
T Consensus 95 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~---~fD~v~~~~~~~~~~d~~~~~~~~~ 161 (302)
T 3hem_A 95 DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----------DE---PVDRIVSLGAFEHFADGAGDAGFER 161 (302)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----------CC---CCSEEEEESCGGGTTCCSSCCCTTH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----------CC---CccEEEEcchHHhcCccccccchhH
Confidence 5789999999999999999999999988999999999764 25 89999986432 33
Q ss_pred hHHHHHHHhhcccCCeEEEEeCCCCC
Q 044253 79 YRNYRETLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~~~~~~ 104 (139)
+..+++.+.++|+|||++++......
T Consensus 162 ~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 162 YDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp HHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 47889999999999999998766543
No 63
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.91 E-value=1.6e-09 Score=76.42 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=67.4
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----chHHH
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----NYRNY 82 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----~~~~~ 82 (139)
+..+.+++++|+|+++++.|++++...++.+ +++++++|+.+.+. .. +||+|+++++.. ....+
T Consensus 71 ~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~---~~D~v~~~~~~~~~~~~~~~~ 139 (194)
T 1dus_A 71 ADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--------DR---KYNKIITNPPIRAGKEVLHRI 139 (194)
T ss_dssp GGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--------TS---CEEEEEECCCSTTCHHHHHHH
T ss_pred HHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--------cC---CceEEEECCCcccchhHHHHH
Confidence 3346789999999999999999999998854 59999999877432 35 899999998643 34567
Q ss_pred HHHHhhcccCCeEEEEeCC
Q 044253 83 RETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~ 101 (139)
++.+.++|+|||.+++...
T Consensus 140 l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 140 IEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHcCCCCEEEEEEC
Confidence 8888899999999997543
No 64
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.91 E-value=1.7e-09 Score=84.29 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=65.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHH--cCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------ch-H
Q 044253 11 IYFIVAIDVSRESSETGLPIIKK--VEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------NY-R 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~--~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------~~-~ 80 (139)
..+|++||+|+++++.|++++.. .++ .++++++++|+.+.++.. .+ +||+|++|+... .+ .
T Consensus 140 ~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~---~fDvIi~d~~~p~~~~~~l~~~ 210 (321)
T 2pt6_A 140 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TN---TYDVIIVDSSDPIGPAETLFNQ 210 (321)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CS---CEEEEEEECCCSSSGGGGGSSH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------CC---CceEEEECCcCCCCcchhhhHH
Confidence 46899999999999999999876 334 468999999999887543 35 899999997311 12 6
Q ss_pred HHHHHHhhcccCCeEEEEeC
Q 044253 81 NYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+++.+.+.|+|||++++..
T Consensus 211 ~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 211 NFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEc
Confidence 78899999999999999863
No 65
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.91 E-value=9.2e-10 Score=81.85 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=65.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|+|+++++.|+++++..|+.++++++++|+.+.++ .. +||+|++|.+ ....+++.+.+.|
T Consensus 118 ~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~---~~D~v~~~~~--~~~~~l~~~~~~L 184 (255)
T 3mb5_A 118 EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE--------EE---NVDHVILDLP--QPERVVEHAAKAL 184 (255)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC--------CC---SEEEEEECSS--CGGGGHHHHHHHE
T ss_pred CeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC--------CC---CcCEEEECCC--CHHHHHHHHHHHc
Confidence 678999999999999999999999998789999999986421 35 7999999875 3456788899999
Q ss_pred cCCeEEEEe
Q 044253 91 KVGGIVIYD 99 (139)
Q Consensus 91 ~~gG~ii~~ 99 (139)
+|||.+++.
T Consensus 185 ~~gG~l~~~ 193 (255)
T 3mb5_A 185 KPGGFFVAY 193 (255)
T ss_dssp EEEEEEEEE
T ss_pred CCCCEEEEE
Confidence 999999974
No 66
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.91 E-value=3.5e-09 Score=80.81 Aligned_cols=78 Identities=12% Similarity=0.217 Sum_probs=64.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc--CC--------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV--EV--------DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--- 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~--g~--------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--- 77 (139)
..+|++||+|+++++.|++++ .. ++ .++++++++|+.+++.. .+ +||+|++|+...
T Consensus 98 ~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-------~~---~fD~Ii~d~~~~~~~ 166 (281)
T 1mjf_A 98 VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------NR---GFDVIIADSTDPVGP 166 (281)
T ss_dssp CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-------CC---CEEEEEEECCCCC--
T ss_pred CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-------cC---CeeEEEECCCCCCCc
Confidence 458999999999999999998 44 33 46899999999988754 25 899999998521
Q ss_pred ----chHHHHHHHhhcccCCeEEEEe
Q 044253 78 ----NYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 78 ----~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
....+++.+.+.|+|||++++.
T Consensus 167 ~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 167 AKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp ---TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 1367889999999999999986
No 67
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=98.90 E-value=2.1e-09 Score=81.25 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=70.1
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNY 82 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~ 82 (139)
..+..+.+|+++|+|+++++.|++++...|+.++++++++|+.+... .. .+ +||+|++.... .+...+
T Consensus 85 ~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~---~fD~v~~~~~l~~~~~~~~~ 155 (285)
T 4htf_A 85 KMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-HL-----ET---PVDLILFHAVLEWVADPRSV 155 (285)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-GC-----SS---CEEEEEEESCGGGCSCHHHH
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-hc-----CC---CceEEEECchhhcccCHHHH
Confidence 34445789999999999999999999999987799999999987632 21 45 89999997632 345778
Q ss_pred HHHHhhcccCCeEEEEeCC
Q 044253 83 RETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~ 101 (139)
++.+.++|+|||++++...
T Consensus 156 l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 156 LQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp HHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHcCCCeEEEEEEe
Confidence 9999999999999998643
No 68
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.90 E-value=4.7e-09 Score=83.29 Aligned_cols=83 Identities=14% Similarity=0.269 Sum_probs=62.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcC---CC----CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-c------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVE---VD----LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-D------ 77 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g---~~----~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~------ 77 (139)
.+|++||+|+++++.||+++...+ +. ++++++.+|+.+++++.... .+ +||+||+|+.. +
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~---~~---~fDvII~D~~d~P~~~~p~ 285 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE---GR---EFDYVINDLTAVPISTSPE 285 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH---TC---CEEEEEEECCSSCCCCC--
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhcc---CC---CceEEEECCCCcccCcCch
Confidence 579999999999999999986432 32 27999999999998764211 36 89999999743 1
Q ss_pred --chHHHHHHH----hhcccCCeEEEEeC
Q 044253 78 --NYRNYRETL----MTLFKVGGIVIYDN 100 (139)
Q Consensus 78 --~~~~~~~~~----~~lL~~gG~ii~~~ 100 (139)
....+++.+ .++|+|||++++..
T Consensus 286 ~L~t~eFy~~~~~~~~~~L~pgGilv~qs 314 (364)
T 2qfm_A 286 EDSTWEFLRLILDLSMKVLKQDGKYFTQG 314 (364)
T ss_dssp --CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHHHHHhhCCCCcEEEEEc
Confidence 124455555 79999999999763
No 69
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.89 E-value=2.5e-09 Score=80.90 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=65.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------- 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------- 77 (139)
..+|+++|+|+++++.|++|++..|+. +++++++|+.+.++ .+ +||+|+++++..
T Consensus 133 ~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~--------~~---~fD~Iv~npPy~~~~~~~l~~~v~~ 200 (276)
T 2b3t_A 133 DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALA--------GQ---QFAMIVSNPPYIDEQDPHLQQGDVR 200 (276)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGT--------TC---CEEEEEECCCCBCTTCHHHHSSGGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcc--------cC---CccEEEECCCCCCccccccChhhhh
Confidence 678999999999999999999999985 79999999976432 35 899999987531
Q ss_pred ---------------chHHHHHHHhhcccCCeEEEEeC
Q 044253 78 ---------------NYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 78 ---------------~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+..+++.+.++|+|||++++..
T Consensus 201 ~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 201 FEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp SSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 24567788889999999999863
No 70
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.89 E-value=1e-09 Score=84.60 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=61.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcC---C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------ch
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVE---V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NY 79 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g---~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~ 79 (139)
..+|++||+|+++++.|++++...+ + .++++++++|+.+++... .+ +||+|++|+... ..
T Consensus 107 ~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~~---~fDvIi~D~~~p~~~~~~l~~ 177 (294)
T 3adn_A 107 VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT------SQ---TFDVIISDCTDPIGPGESLFT 177 (294)
T ss_dssp CCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CC------CC---CEEEEEECC----------CC
T ss_pred CCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhc------CC---CccEEEECCCCccCcchhccH
Confidence 4579999999999999999987652 2 358999999999887642 36 899999987422 12
Q ss_pred HHHHHHHhhcccCCeEEEEe
Q 044253 80 RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~ 99 (139)
..+++.+.+.|+|||++++.
T Consensus 178 ~~f~~~~~~~LkpgG~lv~~ 197 (294)
T 3adn_A 178 SAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp HHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEe
Confidence 56888999999999999985
No 71
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.89 E-value=2e-10 Score=84.78 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=64.2
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH--
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN-- 81 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~-- 81 (139)
++..+..+.+|+++|+|+.+++.|++|++..|+.++++++++|+.+... .. +||+|+++++......
T Consensus 93 ~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~---~~D~v~~~~~~~~~~~~~ 161 (241)
T 3gdh_A 93 TIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS--------FL---KADVVFLSPPWGGPDYAT 161 (241)
T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--------GC---CCSEEEECCCCSSGGGGG
T ss_pred HHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--------cC---CCCEEEECCCcCCcchhh
Confidence 3455556789999999999999999999999987789999999988641 46 8999999986432211
Q ss_pred -HHHHHhhcccCCeEEEEe
Q 044253 82 -YRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 82 -~~~~~~~lL~~gG~ii~~ 99 (139)
.+..+.++|+|||+++++
T Consensus 162 ~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 162 AETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SSSBCTTTSCSSCHHHHHH
T ss_pred hHHHHHHhhcCCcceeHHH
Confidence 223345677777776554
No 72
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=98.88 E-value=1.2e-09 Score=78.79 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=65.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|+++|+|+++++.|++++...++.+ ++++++|+.+.. .+ +||+|+++.....+..+++.+.++|+
T Consensus 84 ~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~---------~~---~fD~i~~~~~~~~~~~~l~~~~~~L~ 150 (205)
T 3grz_A 84 KSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV---------DG---KFDLIVANILAEILLDLIPQLDSHLN 150 (205)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC---------CS---CEEEEEEESCHHHHHHHGGGSGGGEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC---------CC---CceEEEECCcHHHHHHHHHHHHHhcC
Confidence 489999999999999999999999865 999999987642 35 89999999876666777888889999
Q ss_pred CCeEEEEeC
Q 044253 92 VGGIVIYDN 100 (139)
Q Consensus 92 ~gG~ii~~~ 100 (139)
|||++++..
T Consensus 151 ~gG~l~~~~ 159 (205)
T 3grz_A 151 EDGQVIFSG 159 (205)
T ss_dssp EEEEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999853
No 73
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.88 E-value=1.1e-09 Score=81.65 Aligned_cols=88 Identities=11% Similarity=0.024 Sum_probs=69.0
Q ss_pred chhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCcchH
Q 044253 4 NLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKDNYR 80 (139)
Q Consensus 4 ~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~~~~ 80 (139)
++..+.. ..+|+++|+|+.+++.|++|++.+|+.++++++++|+++.++. .+ +||+|++-+ +.....
T Consensus 30 ~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-------~~---~~D~IviaG~Gg~~i~ 99 (225)
T 3kr9_A 30 PIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-------TD---QVSVITIAGMGGRLIA 99 (225)
T ss_dssp HHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GG---CCCEEEEEEECHHHHH
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-------Cc---CCCEEEEcCCChHHHH
Confidence 3444443 4689999999999999999999999988999999999876532 24 699998754 223356
Q ss_pred HHHHHHhhcccCCeEEEEeCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.+++.....|+++|++++.-.
T Consensus 100 ~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 100 RILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp HHHHHTGGGCTTCCEEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEECC
Confidence 788888889999999987433
No 74
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.88 E-value=2.6e-09 Score=77.76 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=65.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----------ch
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----------NY 79 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----------~~ 79 (139)
..++++||+|+++++.|++++...|+ ++++++++|+.+....+. .+ +||+|+++.+.. .+
T Consensus 65 ~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~-----~~---~~D~i~~~~~~~~~~~~~~~~~~~~ 135 (214)
T 1yzh_A 65 DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFE-----DG---EIDRLYLNFSDPWPKKRHEKRRLTY 135 (214)
T ss_dssp TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSC-----TT---CCSEEEEESCCCCCSGGGGGGSTTS
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcC-----CC---CCCEEEEECCCCccccchhhhccCC
Confidence 57899999999999999999999998 689999999987321121 35 799999986432 23
Q ss_pred HHHHHHHhhcccCCeEEEEe
Q 044253 80 RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~ 99 (139)
..+++.+.+.|+|||++++.
T Consensus 136 ~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 136 KTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp HHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEE
Confidence 57899999999999999874
No 75
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.88 E-value=8.7e-09 Score=84.15 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=66.1
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------- 78 (139)
.+|+++|+|+++++.+++|++.+|+. ++++++|+.+..... .+ +||+|++|++...
T Consensus 127 g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~------~~---~FD~Il~D~PcSg~G~~rr~pd~~~~ 195 (464)
T 3m6w_A 127 GLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAF------GT---YFHRVLLDAPCSGEGMFRKDREAARH 195 (464)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHH------CS---CEEEEEEECCCCCGGGTTTCTTSGGG
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhc------cc---cCCEEEECCCcCCccccccChHHhhh
Confidence 58999999999999999999999985 999999999875333 46 8999999986521
Q ss_pred ------------hHHHHHHHhhcccCCeEEEEeCCC
Q 044253 79 ------------YRNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 79 ------------~~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
...+++.+.++|+|||++++....
T Consensus 196 ~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 196 WGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 155778888999999999975443
No 76
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.87 E-value=7.5e-09 Score=76.27 Aligned_cols=81 Identities=11% Similarity=0.173 Sum_probs=64.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc---CCC--cc------h
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD---AHK--DN------Y 79 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D---~~~--~~------~ 79 (139)
..+|++||+|+++++.|+++++..|+. +++++++|+.+.++.... .+ +||.|++. +.. .. .
T Consensus 58 ~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~----~~---~~d~v~~~~~~p~~~~~~~~rr~~~ 129 (218)
T 3dxy_A 58 EQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIP----DN---SLRMVQLFFPDPWHKARHNKRRIVQ 129 (218)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSC----TT---CEEEEEEESCCCCCSGGGGGGSSCS
T ss_pred CCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcC----CC---ChheEEEeCCCCccchhhhhhhhhh
Confidence 567999999999999999999999985 699999999998764211 35 89999986 311 11 1
Q ss_pred HHHHHHHhhcccCCeEEEEe
Q 044253 80 RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~ 99 (139)
..+++.+.+.|+|||++++.
T Consensus 130 ~~~l~~~~r~LkpGG~l~i~ 149 (218)
T 3dxy_A 130 VPFAELVKSKLQLGGVFHMA 149 (218)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEE
Confidence 35889999999999999874
No 77
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.87 E-value=1.9e-09 Score=85.25 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=66.6
Q ss_pred chhhhhhh--cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--ch
Q 044253 4 NLESTFFI--YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NY 79 (139)
Q Consensus 4 ~~~~~~~~--~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~ 79 (139)
++..+..+ .+|+++|+|+++++.|++|++.+|+. +++++++|+.+.++... .+ +||+|++|++.. ..
T Consensus 186 ~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~-----~~---~fD~Vi~~~p~~~~~~ 256 (373)
T 2qm3_A 186 SIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYA-----LH---KFDTFITDPPETLEAI 256 (373)
T ss_dssp HHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTT-----SS---CBSEEEECCCSSHHHH
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhc-----cC---CccEEEECCCCchHHH
Confidence 34445443 58999999999999999999999986 89999999987433211 35 899999998642 23
Q ss_pred HHHHHHHhhcccCCe-EEEEe
Q 044253 80 RNYRETLMTLFKVGG-IVIYD 99 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG-~ii~~ 99 (139)
..+++.+.+.|+||| ++++.
T Consensus 257 ~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 257 RAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp HHHHHHHHHTBCSTTCEEEEE
T ss_pred HHHHHHHHHHcccCCeEEEEE
Confidence 567788889999999 43443
No 78
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.86 E-value=7.7e-09 Score=75.61 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=64.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----------ch
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----------NY 79 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----------~~ 79 (139)
..++++||+|+++++.|+++++..|+ ++++++++|+.+....+. .. +||.|++..+.. .+
T Consensus 62 ~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~-----~~---~~d~v~~~~~~p~~~~~~~~~rl~~ 132 (213)
T 2fca_A 62 DINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFE-----PG---EVKRVYLNFSDPWPKKRHEKRRLTY 132 (213)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCC-----TT---SCCEEEEESCCCCCSGGGGGGSTTS
T ss_pred CCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcC-----cC---CcCEEEEECCCCCcCccccccccCc
Confidence 67899999999999999999999998 479999999987432232 35 899998853211 14
Q ss_pred HHHHHHHhhcccCCeEEEEe
Q 044253 80 RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~ 99 (139)
..+++.+.+.|+|||.+++.
T Consensus 133 ~~~l~~~~~~LkpgG~l~~~ 152 (213)
T 2fca_A 133 SHFLKKYEEVMGKGGSIHFK 152 (213)
T ss_dssp HHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEE
Confidence 67899999999999999874
No 79
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.86 E-value=2.5e-09 Score=77.18 Aligned_cols=80 Identities=14% Similarity=0.225 Sum_probs=64.3
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~ 85 (139)
..+..+.+|+++|+|+++++.|++++...++. +++++++|+.+.... .. +||+|+++.....+. +.
T Consensus 94 ~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~---~~D~i~~~~~~~~~~---~~ 159 (210)
T 3lbf_A 94 ILAHLVQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQA-------RA---PFDAIIVTAAPPEIP---TA 159 (210)
T ss_dssp HHHHHSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GC---CEEEEEESSBCSSCC---TH
T ss_pred HHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCcc-------CC---CccEEEEccchhhhh---HH
Confidence 33444679999999999999999999999985 799999999875322 35 899999987544333 35
Q ss_pred HhhcccCCeEEEEe
Q 044253 86 LMTLFKVGGIVIYD 99 (139)
Q Consensus 86 ~~~lL~~gG~ii~~ 99 (139)
+.++|+|||++++.
T Consensus 160 ~~~~L~pgG~lv~~ 173 (210)
T 3lbf_A 160 LMTQLDEGGILVLP 173 (210)
T ss_dssp HHHTEEEEEEEEEE
T ss_pred HHHhcccCcEEEEE
Confidence 77899999999885
No 80
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=98.85 E-value=3.2e-09 Score=78.67 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=68.1
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|+++|+|+.+++.|++++...|+.++++++++|+.+. + .. .+ +||+|++..... +....++.+.++
T Consensus 70 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~l~~~~~~ 139 (257)
T 3f4k_A 70 GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P-FQ-----NE---ELDLIWSEGAIYNIGFERGMNEWSKY 139 (257)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S-SC-----TT---CEEEEEEESCSCCCCHHHHHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C-CC-----CC---CEEEEEecChHhhcCHHHHHHHHHHH
Confidence 399999999999999999999999988899999999653 2 11 35 899999875322 467789999999
Q ss_pred ccCCeEEEEeCCCC
Q 044253 90 FKVGGIVIYDNTLW 103 (139)
Q Consensus 90 L~~gG~ii~~~~~~ 103 (139)
|+|||++++.+..|
T Consensus 140 L~pgG~l~~~~~~~ 153 (257)
T 3f4k_A 140 LKKGGFIAVSEASW 153 (257)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred cCCCcEEEEEEeec
Confidence 99999999876543
No 81
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=98.85 E-value=3.4e-09 Score=80.25 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=64.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~ 85 (139)
+++|++||+|++|++.||+++...+...+++++++|+.+. + .+ +||+|++..... ....+++.
T Consensus 96 ~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~-~--------~~---~~d~v~~~~~l~~~~~~~~~~~l~~ 163 (261)
T 4gek_A 96 NCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A--------IE---NASMVVLNFTLQFLEPSERQALLDK 163 (261)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-C--------CC---SEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-c--------cc---ccccceeeeeeeecCchhHhHHHHH
Confidence 4589999999999999999999998888999999998764 1 25 799999865322 22457889
Q ss_pred HhhcccCCeEEEEeCC
Q 044253 86 LMTLFKVGGIVIYDNT 101 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~ 101 (139)
+.+.|+|||++++.+.
T Consensus 164 i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 164 IYQGLNPGGALVLSEK 179 (261)
T ss_dssp HHHHEEEEEEEEEEEE
T ss_pred HHHHcCCCcEEEEEec
Confidence 9999999999988544
No 82
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.84 E-value=9.3e-10 Score=82.03 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=63.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.++|++||+|+++++.|+ +..++++++++|+.+. ++... .. +||+|++|+.+..+...+..+.+
T Consensus 109 ~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~-----~~---~fD~I~~d~~~~~~~~~l~~~~r 174 (236)
T 2bm8_A 109 DCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLR-----EM---AHPLIFIDNAHANTFNIMKWAVD 174 (236)
T ss_dssp CCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGS-----SS---CSSEEEEESSCSSHHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhc-----cC---CCCEEEECCchHhHHHHHHHHHH
Confidence 578999999999999987 2236899999999874 33221 24 69999999887778888998886
Q ss_pred -cccCCeEEEEeCC
Q 044253 89 -LFKVGGIVIYDNT 101 (139)
Q Consensus 89 -lL~~gG~ii~~~~ 101 (139)
+|+|||++++++.
T Consensus 175 ~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 175 HLLEEGDYFIIEDM 188 (236)
T ss_dssp HTCCTTCEEEECSC
T ss_pred hhCCCCCEEEEEeC
Confidence 9999999999887
No 83
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.84 E-value=2e-09 Score=80.52 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=67.5
Q ss_pred hhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCcchHH
Q 044253 5 LESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKDNYRN 81 (139)
Q Consensus 5 ~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~~~~~ 81 (139)
+..+.. ..+|+++|+|+.+++.|++|++.+|+.++++++++|+++.+.. .+ +||+|++-+ .......
T Consensus 37 i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~-------~~---~~D~IviaGmGg~lI~~ 106 (230)
T 3lec_A 37 IFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE-------AD---NIDTITICGMGGRLIAD 106 (230)
T ss_dssp HHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GG---CCCEEEEEEECHHHHHH
T ss_pred HHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc-------cc---ccCEEEEeCCchHHHHH
Confidence 344443 4589999999999999999999999988999999999887532 34 699988754 3334567
Q ss_pred HHHHHhhcccCCeEEEEeC
Q 044253 82 YRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~ 100 (139)
+++.....|+++|++|+.-
T Consensus 107 IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 107 ILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp HHHHTGGGGTTCCEEEEEE
T ss_pred HHHHHHHHhCcCCEEEEEC
Confidence 7787788899999887643
No 84
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.82 E-value=4.6e-09 Score=75.52 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=69.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
+.+++++|+|+.+++.|++++...++.++++++++|+.+. + +. .+ +||+|++.... .+...+++.+.
T Consensus 66 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~-----~~---~~D~v~~~~~l~~~~~~~~~l~~~~ 135 (219)
T 3dlc_A 66 DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-P-IE-----DN---YADLIVSRGSVFFWEDVATAFREIY 135 (219)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-S-SC-----TT---CEEEEEEESCGGGCSCHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-C-CC-----cc---cccEEEECchHhhccCHHHHHHHHH
Confidence 6799999999999999999999999888999999999763 2 21 35 89999997642 34577899999
Q ss_pred hcccCCeEEEEeCCCCC
Q 044253 88 TLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~~ 104 (139)
++|+|||.+++.+....
T Consensus 136 ~~L~pgG~l~~~~~~~~ 152 (219)
T 3dlc_A 136 RILKSGGKTYIGGGFGN 152 (219)
T ss_dssp HHEEEEEEEEEEECCSS
T ss_pred HhCCCCCEEEEEeccCc
Confidence 99999999998764443
No 85
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.81 E-value=5.4e-09 Score=83.29 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=69.5
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD----- 77 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~----- 77 (139)
+++..+..+.+|+++|+|+.+++.|++|+..+++. ++++++|+.+.... .+ +||+|+++++..
T Consensus 247 ~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~~-------~~---~fD~Ii~npp~~~~~~~ 314 (381)
T 3dmg_A 247 LTLPLARMGAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALTE-------EA---RFDIIVTNPPFHVGGAV 314 (381)
T ss_dssp THHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSCT-------TC---CEEEEEECCCCCTTCSS
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhcccc-------CC---CeEEEEECCchhhcccc
Confidence 45566667789999999999999999999999874 89999999876321 25 899999997543
Q ss_pred ---chHHHHHHHhhcccCCeEEEEe
Q 044253 78 ---NYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 78 ---~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
....+++.+.+.|+|||.+++.
T Consensus 315 ~~~~~~~~l~~~~~~LkpGG~l~iv 339 (381)
T 3dmg_A 315 ILDVAQAFVNVAAARLRPGGVFFLV 339 (381)
T ss_dssp CCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 2356788889999999999874
No 86
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.80 E-value=9.9e-09 Score=78.44 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=65.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcC--C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----c-h-H
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVE--V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----N-Y-R 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g--~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~-~-~ 80 (139)
..+|++||+|+++++.|++++...+ + .++++++++|+.+.++.. .+ +||+|++|+... . + .
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~---~fD~Ii~d~~~~~~~~~~l~~~ 172 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TN---TYDVIIVDSSDPIGPAETLFNQ 172 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CS---CEEEEEEECCCTTTGGGGGSSH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------CC---CceEEEEcCCCCCCcchhhhHH
Confidence 4689999999999999999986542 2 468999999999987643 35 899999987321 1 1 5
Q ss_pred HHHHHHhhcccCCeEEEEeC
Q 044253 81 NYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+++.+.+.|+|||++++..
T Consensus 173 ~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 173 NFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp HHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCcEEEEEC
Confidence 78899999999999999864
No 87
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.80 E-value=8.8e-09 Score=74.05 Aligned_cols=77 Identities=12% Similarity=-0.010 Sum_probs=65.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+++++|+|+++++.|++++...++.+ ++++++|+.+..+ .+ +||+|++... ..+..+++.+.+.|
T Consensus 89 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~--------~~---~~D~i~~~~~-~~~~~~l~~~~~~L 155 (207)
T 1jsx_A 89 EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS--------EP---PFDGVISRAF-ASLNDMVSWCHHLP 155 (207)
T ss_dssp TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC--------CS---CEEEEECSCS-SSHHHHHHHHTTSE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCc--------cC---CcCEEEEecc-CCHHHHHHHHHHhc
Confidence 6799999999999999999999999854 9999999986521 35 8999998764 46778899999999
Q ss_pred cCCeEEEEeC
Q 044253 91 KVGGIVIYDN 100 (139)
Q Consensus 91 ~~gG~ii~~~ 100 (139)
+|||++++..
T Consensus 156 ~~gG~l~~~~ 165 (207)
T 1jsx_A 156 GEQGRFYALK 165 (207)
T ss_dssp EEEEEEEEEE
T ss_pred CCCcEEEEEe
Confidence 9999998863
No 88
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.80 E-value=6.6e-09 Score=76.62 Aligned_cols=81 Identities=15% Similarity=0.086 Sum_probs=62.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--------cchHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--------DNYRNYR 83 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--------~~~~~~~ 83 (139)
.+|+++|+|+++++.|+++....+ .+++++++|+.+.+..+. ++ +||+|++|... .....++
T Consensus 84 ~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~-----~~---~fD~V~~d~~~~~~~~~~~~~~~~~l 153 (236)
T 1zx0_A 84 DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-----DG---HFDGILYDTYPLSEETWHTHQFNFIK 153 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC-----TT---CEEEEEECCCCCBGGGTTTHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccC-----CC---ceEEEEECCcccchhhhhhhhHHHHH
Confidence 489999999999999999988777 579999999998753332 35 89999994321 1123457
Q ss_pred HHHhhcccCCeEEEEeCCC
Q 044253 84 ETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~~~ 102 (139)
+.+.++|+|||++++-+..
T Consensus 154 ~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 154 NHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp HTHHHHEEEEEEEEECCHH
T ss_pred HHHHHhcCCCeEEEEEecC
Confidence 8888999999999975543
No 89
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.80 E-value=3.5e-09 Score=80.02 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=65.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
..+|+++|+|+++++.|++|++..++.++++++++|+.+.++ .. +||+|++|++ ....+++.+.+.|
T Consensus 137 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~---~~D~V~~~~~--~~~~~l~~~~~~L 203 (277)
T 1o54_A 137 SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--------EK---DVDALFLDVP--DPWNYIDKCWEAL 203 (277)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--------CC---SEEEEEECCS--CGGGTHHHHHHHE
T ss_pred CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--------CC---ccCEEEECCc--CHHHHHHHHHHHc
Confidence 578999999999999999999999987789999999987521 35 7999999875 3456788899999
Q ss_pred cCCeEEEEeC
Q 044253 91 KVGGIVIYDN 100 (139)
Q Consensus 91 ~~gG~ii~~~ 100 (139)
+|||++++..
T Consensus 204 ~pgG~l~~~~ 213 (277)
T 1o54_A 204 KGGGRFATVC 213 (277)
T ss_dssp EEEEEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999998754
No 90
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.79 E-value=4.5e-09 Score=83.51 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=67.4
Q ss_pred chhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCC--cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--
Q 044253 4 NLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDL--KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-- 77 (139)
Q Consensus 4 ~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~--~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-- 77 (139)
+++.+.. +.+|+++|+|+.+++.|++|+..+|+.+ +++++.+|+.+.++ .+ +||+|+++++..
T Consensus 237 s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--------~~---~fD~Ii~nppfh~~ 305 (375)
T 4dcm_A 237 GLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PF---RFNAVLCNPPFHQQ 305 (375)
T ss_dssp HHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--------TT---CEEEEEECCCC---
T ss_pred HHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--------CC---CeeEEEECCCcccC
Confidence 4455555 6799999999999999999999998754 58889999987431 35 899999998642
Q ss_pred ------chHHHHHHHhhcccCCeEEEEe
Q 044253 78 ------NYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 78 ------~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
....+++.+.+.|+|||.+++-
T Consensus 306 ~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 306 HALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp ----CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 1235788899999999999873
No 91
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.79 E-value=3.5e-09 Score=79.92 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=67.2
Q ss_pred chhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCcchH
Q 044253 4 NLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKDNYR 80 (139)
Q Consensus 4 ~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~~~~ 80 (139)
++..+.. ..+|+++|+|+.+++.|++|++.+|+.++++++++|+++.+.. .+ +||+|++-+ ......
T Consensus 36 ~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~-------~~---~~D~IviagmGg~lI~ 105 (244)
T 3gnl_A 36 PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK-------KD---AIDTIVIAGMGGTLIR 105 (244)
T ss_dssp HHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GG---CCCEEEEEEECHHHHH
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-------cc---cccEEEEeCCchHHHH
Confidence 3444443 4589999999999999999999999988999999999886532 23 599988743 333456
Q ss_pred HHHHHHhhcccCCeEEEEe
Q 044253 81 NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~ 99 (139)
.+++.....|+++|++|+.
T Consensus 106 ~IL~~~~~~L~~~~~lIlq 124 (244)
T 3gnl_A 106 TILEEGAAKLAGVTKLILQ 124 (244)
T ss_dssp HHHHHTGGGGTTCCEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEE
Confidence 7788888888999988764
No 92
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=98.79 E-value=4.9e-09 Score=78.50 Aligned_cols=83 Identities=7% Similarity=0.061 Sum_probs=68.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|+++|+|+.+++.|++++...|+.++++++++|+.+. + +. .+ +||+|++..... +...+++.+.+
T Consensus 69 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~-----~~---~fD~i~~~~~~~~~~~~~~l~~~~~ 138 (267)
T 3kkz_A 69 TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-P-FR-----NE---ELDLIWSEGAIYNIGFERGLNEWRK 138 (267)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-CC-----TT---CEEEEEESSCGGGTCHHHHHHHHGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-C-CC-----CC---CEEEEEEcCCceecCHHHHHHHHHH
Confidence 4589999999999999999999999988899999999664 2 11 35 899999976422 45778999999
Q ss_pred cccCCeEEEEeCCCC
Q 044253 89 LFKVGGIVIYDNTLW 103 (139)
Q Consensus 89 lL~~gG~ii~~~~~~ 103 (139)
+|+|||++++.+..+
T Consensus 139 ~LkpgG~l~~~~~~~ 153 (267)
T 3kkz_A 139 YLKKGGYLAVSECSW 153 (267)
T ss_dssp GEEEEEEEEEEEEEE
T ss_pred HcCCCCEEEEEEeee
Confidence 999999999876543
No 93
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.79 E-value=5.2e-09 Score=77.47 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=67.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
+.+|+++|+|+++++.|++++...|+.++++++++|+.+.. . .+ +||+|++.... .+....++.+.
T Consensus 59 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~---~fD~V~~~~~~~~~~~~~~~l~~~~ 127 (256)
T 1nkv_A 59 GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV--A------NE---KCDVAACVGATWIAGGFAGAEELLA 127 (256)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--C------SS---CEEEEEEESCGGGTSSSHHHHHHHT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC--c------CC---CCCEEEECCChHhcCCHHHHHHHHH
Confidence 56899999999999999999999999779999999997642 1 25 89999985432 24577899999
Q ss_pred hcccCCeEEEEeCCCC
Q 044253 88 TLFKVGGIVIYDNTLW 103 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~ 103 (139)
+.|+|||++++.+..+
T Consensus 128 r~LkpgG~l~~~~~~~ 143 (256)
T 1nkv_A 128 QSLKPGGIMLIGEPYW 143 (256)
T ss_dssp TSEEEEEEEEEEEEEE
T ss_pred HHcCCCeEEEEecCcc
Confidence 9999999999865443
No 94
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.79 E-value=1.3e-08 Score=78.05 Aligned_cols=80 Identities=6% Similarity=0.113 Sum_probs=67.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----CcchHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~~~~~~~ 85 (139)
+.+|+++|+|+++++.|++++...|+.++++++++|+.+. .+ +||+|++... ..++..+++.
T Consensus 113 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~---~fD~v~~~~~l~~~~~~~~~~~l~~ 179 (318)
T 2fk8_A 113 DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----------AE---PVDRIVSIEAFEHFGHENYDDFFKR 179 (318)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----------CC---CCSEEEEESCGGGTCGGGHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC----------CC---CcCEEEEeChHHhcCHHHHHHHHHH
Confidence 6799999999999999999999999888899999998653 24 8999998742 2456788999
Q ss_pred HhhcccCCeEEEEeCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~ 103 (139)
+.++|+|||.+++.....
T Consensus 180 ~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 180 CFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp HHHHSCTTCEEEEEEEEC
T ss_pred HHHhcCCCcEEEEEEecc
Confidence 999999999999866544
No 95
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=98.79 E-value=2.8e-08 Score=69.38 Aligned_cols=80 Identities=20% Similarity=0.227 Sum_probs=66.5
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.+....+++++|+|+++++.|+++++..++ ++++++++|+.+.++ .. +||+|+++.. .....+++.+
T Consensus 53 l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~--------~~---~~D~i~~~~~-~~~~~~l~~~ 119 (183)
T 2yxd_A 53 IAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLD--------KL---EFNKAFIGGT-KNIEKIIEIL 119 (183)
T ss_dssp HHTTSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGG--------GC---CCSEEEECSC-SCHHHHHHHH
T ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCcccccc--------CC---CCcEEEECCc-ccHHHHHHHH
Confidence 333567899999999999999999999998 579999999987422 35 8999999987 6777888888
Q ss_pred hhcccCCeEEEEeCC
Q 044253 87 MTLFKVGGIVIYDNT 101 (139)
Q Consensus 87 ~~lL~~gG~ii~~~~ 101 (139)
.++ |||.+++...
T Consensus 120 ~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 120 DKK--KINHIVANTI 132 (183)
T ss_dssp HHT--TCCEEEEEES
T ss_pred hhC--CCCEEEEEec
Confidence 777 9999987653
No 96
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=98.79 E-value=3e-09 Score=76.31 Aligned_cols=81 Identities=10% Similarity=0.061 Sum_probs=44.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
..+++++|+|+++++.|++++...+. +++++++|+.+.+...... .+ +||+|+++++...
T Consensus 54 ~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---~~---~fD~i~~npp~~~~~~~~~~~~~~~ 125 (215)
T 4dzr_A 54 GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLIERAER---GR---PWHAIVSNPPYIPTGEIDQLEPSVR 125 (215)
T ss_dssp TEEEEEEECC---------------------CCHHHHHHHHHHHHHT---TC---CBSEEEECCCCCC------------
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhhhhhhc---cC---cccEEEECCCCCCCccccccChhhh
Confidence 56899999999999999999998887 7999999998865431110 25 8999999865311
Q ss_pred -----------------hHHHHHHHhhcccCCeE-EEEe
Q 044253 79 -----------------YRNYRETLMTLFKVGGI-VIYD 99 (139)
Q Consensus 79 -----------------~~~~~~~~~~lL~~gG~-ii~~ 99 (139)
+..+++.+.++|+|||+ +++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 126 DYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp ------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred ccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 14566667789999999 6654
No 97
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.78 E-value=1.5e-08 Score=82.94 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=66.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------- 78 (139)
.+|+++|+|+++++.+++|++.+|+. +++++++|+..+.... .+ +||+|++|++...
T Consensus 143 g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~------~~---~fD~Il~D~PcSg~G~~~~~pd~~~~ 212 (479)
T 2frx_A 143 GAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAV------PE---MFDAILLDAPCSGEGVVRKDPDALKN 212 (479)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHS------TT---CEEEEEEECCCCCGGGGGTCTTSSSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhc------cc---cCCEEEECCCcCCcccccCCHHHHhh
Confidence 68999999999999999999999985 6999999998764322 35 8999999976421
Q ss_pred ------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 79 ------------YRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 79 ------------~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
...+++.+.++|+|||++++....+
T Consensus 213 ~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 213 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 1246777889999999999865433
No 98
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.78 E-value=1.5e-08 Score=78.57 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=65.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
..+|+++|+|+.+++.+++|++..|+. +++++++|+..... . .+ +||+|++|++...
T Consensus 143 ~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~-~------~~---~fD~Il~d~Pcsg~g~~~~~p~~~~ 211 (315)
T 1ixk_A 143 DGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE-L------NV---EFDKILLDAPCTGSGTIHKNPERKW 211 (315)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG-G------CC---CEEEEEEECCTTSTTTCC-------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccc-c------cc---cCCEEEEeCCCCCcccccCChhHhh
Confidence 368999999999999999999999985 69999999987532 2 35 8999999976321
Q ss_pred -------------hHHHHHHHhhcccCCeEEEEeCCC
Q 044253 79 -------------YRNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 79 -------------~~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
...+++.+.++|+|||++++....
T Consensus 212 ~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 212 NRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 136778888999999999986543
No 99
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.78 E-value=5.5e-09 Score=77.00 Aligned_cols=82 Identities=17% Similarity=0.074 Sum_probs=67.0
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.+....+|+++|+|+++++.|++++...++.++++++.+|+.+... . .. +||+|+++++ .....++.+
T Consensus 109 l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~-----~~---~~D~v~~~~~--~~~~~l~~~ 176 (248)
T 2yvl_A 109 LSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--P-----EG---IFHAAFVDVR--EPWHYLEKV 176 (248)
T ss_dssp HHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--C-----TT---CBSEEEECSS--CGGGGHHHH
T ss_pred HHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--C-----CC---cccEEEECCc--CHHHHHHHH
Confidence 3334679999999999999999999999987789999999976420 1 35 7999999875 345678889
Q ss_pred hhcccCCeEEEEeC
Q 044253 87 MTLFKVGGIVIYDN 100 (139)
Q Consensus 87 ~~lL~~gG~ii~~~ 100 (139)
.+.|+|||.+++..
T Consensus 177 ~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 177 HKSLMEGAPVGFLL 190 (248)
T ss_dssp HHHBCTTCEEEEEE
T ss_pred HHHcCCCCEEEEEe
Confidence 99999999998743
No 100
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.74 E-value=1.6e-08 Score=76.33 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=66.9
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cc
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DN 78 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~ 78 (139)
++..+..+.+|+++|+|+.+++.|++++...++ +++++++|+.+... .+ +||+|++.... ..
T Consensus 135 ~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--------~~---~fD~i~~~~~~~~~~~~~ 201 (286)
T 3m70_A 135 SLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI--------QE---NYDFIVSTVVFMFLNRER 201 (286)
T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC--------CS---CEEEEEECSSGGGSCGGG
T ss_pred HHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc--------cC---CccEEEEccchhhCCHHH
Confidence 344555678999999999999999999999887 79999999976421 25 89999997632 33
Q ss_pred hHHHHHHHhhcccCCeEEEEe
Q 044253 79 YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~ 99 (139)
...+++.+.++|+|||++++-
T Consensus 202 ~~~~l~~~~~~LkpgG~l~i~ 222 (286)
T 3m70_A 202 VPSIIKNMKEHTNVGGYNLIV 222 (286)
T ss_dssp HHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEE
Confidence 557889999999999997653
No 101
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.74 E-value=8.8e-09 Score=79.07 Aligned_cols=87 Identities=9% Similarity=0.033 Sum_probs=69.5
Q ss_pred hhhhh-hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHHH
Q 044253 6 ESTFF-IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRNY 82 (139)
Q Consensus 6 ~~~~~-~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~~ 82 (139)
..+.. +.+|+++|+|+++++.|++++...|+.++++++++|+.+. + +. .+ +||+|++... ......+
T Consensus 134 ~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~-----~~---~fD~V~~~~~l~~~~~~~~ 203 (312)
T 3vc1_A 134 MAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-P-FD-----KG---AVTASWNNESTMYVDLHDL 203 (312)
T ss_dssp HHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-CC-----TT---CEEEEEEESCGGGSCHHHH
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-C-CC-----CC---CEeEEEECCchhhCCHHHH
Confidence 33444 6799999999999999999999999988999999999764 2 21 35 8999998642 1236778
Q ss_pred HHHHhhcccCCeEEEEeCCC
Q 044253 83 RETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~~ 102 (139)
++.+.++|+|||++++....
T Consensus 204 l~~~~~~LkpgG~l~~~~~~ 223 (312)
T 3vc1_A 204 FSEHSRFLKVGGRYVTITGC 223 (312)
T ss_dssp HHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEEEcc
Confidence 99999999999999975533
No 102
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=98.74 E-value=2.1e-09 Score=80.11 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=62.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc---CCCCc-------------------------EE-------------EEeCChHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV---EVDLK-------------------------IN-------------LMESRALP 49 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~---g~~~~-------------------------i~-------------~~~~da~~ 49 (139)
..+|+++|+|+++++.|++|+... ++.++ ++ ++++|+.+
T Consensus 77 ~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~ 156 (250)
T 1o9g_A 77 LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFD 156 (250)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhhhhhhhhccccccccccceeeccccc
Confidence 578999999999999999999877 55333 67 99999876
Q ss_pred HHHhhH-HhhhcccCCCceeEEEEcCCCc------------chHHHHHHHhhcccCCeEEEEe
Q 044253 50 ALDQLL-KDEKIHFFFENFDYAFVDAHKD------------NYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 50 ~l~~~~-~~~~~~~~~~~fD~If~D~~~~------------~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
.+.... .. .. +||+|+++++.. .+..+++.+.++|+|||++++.
T Consensus 157 ~~~~~~~~~---~~---~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 213 (250)
T 1o9g_A 157 PRALSAVLA---GS---APDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVT 213 (250)
T ss_dssp GGGHHHHHT---TC---CCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccccccccC---CC---CceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEe
Confidence 432100 00 35 799999987532 2346788888999999999874
No 103
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=98.73 E-value=2.3e-08 Score=77.16 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=62.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHH---cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-------H
Q 044253 11 IYFIVAIDVSRESSETGLPIIKK---VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-------R 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~---~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-------~ 80 (139)
..+|++||+|+.+++.|++++.. ....++++++.+|+.+++.... .+ +||+|++|...... .
T Consensus 119 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~-----~~---~fDvIi~d~~~~~~~~~~l~~~ 190 (304)
T 3bwc_A 119 VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTP-----DN---TYDVVIIDTTDPAGPASKLFGE 190 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSC-----TT---CEEEEEEECC---------CCH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhcc-----CC---ceeEEEECCCCccccchhhhHH
Confidence 45899999999999999998843 2224689999999998865311 35 89999999743211 5
Q ss_pred HHHHHHhhcccCCeEEEEe
Q 044253 81 NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~ 99 (139)
.+++.+.+.|+|||++++.
T Consensus 191 ~~l~~~~~~LkpgG~lv~~ 209 (304)
T 3bwc_A 191 AFYKDVLRILKPDGICCNQ 209 (304)
T ss_dssp HHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEe
Confidence 7888999999999999985
No 104
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.73 E-value=4.7e-09 Score=77.10 Aligned_cols=84 Identities=13% Similarity=0.079 Sum_probs=67.5
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----CcchHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNYRN 81 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~~~ 81 (139)
.+..+.+|+++|+|+.+++.|++++...+...+++++++|+.+.. . .. +||+|++... ......
T Consensus 84 l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~---~fD~v~~~~~l~~~~~~~~~~ 152 (235)
T 3lcc_A 84 MASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR--P------TE---LFDLIFDYVFFCAIEPEMRPA 152 (235)
T ss_dssp HCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC--C------SS---CEEEEEEESSTTTSCGGGHHH
T ss_pred HHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC--C------CC---CeeEEEEChhhhcCCHHHHHH
Confidence 344577899999999999999999987766678999999998742 1 45 8999998642 225567
Q ss_pred HHHHHhhcccCCeEEEEeCC
Q 044253 82 YRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~~ 101 (139)
+++.+.++|+|||.+++...
T Consensus 153 ~l~~~~~~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 153 WAKSMYELLKPDGELITLMY 172 (235)
T ss_dssp HHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHCCCCcEEEEEEe
Confidence 89999999999999987543
No 105
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.72 E-value=3.2e-08 Score=74.63 Aligned_cols=81 Identities=9% Similarity=0.066 Sum_probs=67.6
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYRE 84 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~~ 84 (139)
.+.+|+++|+|+++++.|++++...|..++++++++|+.+. .+ +||+|++.... .++..+++
T Consensus 86 ~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----------~~---~fD~v~~~~~l~~~~~~~~~~~l~ 152 (287)
T 1kpg_A 86 YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----------DE---PVDRIVSIGAFEHFGHERYDAFFS 152 (287)
T ss_dssp HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----------CC---CCSEEEEESCGGGTCTTTHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----------CC---CeeEEEEeCchhhcChHHHHHHHH
Confidence 45699999999999999999999999878999999998642 24 89999986421 35678899
Q ss_pred HHhhcccCCeEEEEeCCCC
Q 044253 85 TLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~~~~ 103 (139)
.+.++|+|||++++.....
T Consensus 153 ~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 153 LAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp HHHHHSCTTCEEEEEEEEE
T ss_pred HHHHhcCCCCEEEEEEecC
Confidence 9999999999999876544
No 106
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.72 E-value=1.9e-08 Score=79.67 Aligned_cols=87 Identities=10% Similarity=0.085 Sum_probs=68.6
Q ss_pred hhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Cc
Q 044253 5 LESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KD 77 (139)
Q Consensus 5 ~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~ 77 (139)
+..+..+. +|++||+| .+++.|+++++.+++.++++++++|+.+.. + .+ +||+|+++.. ..
T Consensus 79 ~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~---~~D~Iv~~~~~~~l~~e~ 146 (376)
T 3r0q_C 79 IWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS--L------PE---KVDVIISEWMGYFLLRES 146 (376)
T ss_dssp HHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC--C------SS---CEEEEEECCCBTTBTTTC
T ss_pred HHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC--c------CC---cceEEEEcChhhcccchH
Confidence 34444455 89999999 999999999999999889999999997652 2 25 8999999762 12
Q ss_pred chHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 78 NYRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
....++..+.++|+|||++++.....
T Consensus 147 ~~~~~l~~~~~~LkpgG~li~~~~~~ 172 (376)
T 3r0q_C 147 MFDSVISARDRWLKPTGVMYPSHARM 172 (376)
T ss_dssp THHHHHHHHHHHEEEEEEEESSEEEE
T ss_pred HHHHHHHHHHhhCCCCeEEEEecCeE
Confidence 34567888889999999998765443
No 107
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.72 E-value=1.2e-08 Score=78.18 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=67.8
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---ch---HHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NY---RNYR 83 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~---~~~~ 83 (139)
.+.+|+++|+|+.+++.|++++...|+.++++++++|+.+. + . .+ +||+|++..... +. ..++
T Consensus 142 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~------~~---~fD~v~~~~~~~~~~~~~~~~~~l 210 (305)
T 3ocj_A 142 PGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-D-T------RE---GYDLLTSNGLNIYEPDDARVTELY 210 (305)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-C-C------CS---CEEEEECCSSGGGCCCHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-C-c------cC---CeEEEEECChhhhcCCHHHHHHHH
Confidence 46689999999999999999999999988899999999874 1 1 25 899999976322 22 3468
Q ss_pred HHHhhcccCCeEEEEeCCCC
Q 044253 84 ETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~~~~ 103 (139)
+.+.+.|+|||++++.+...
T Consensus 211 ~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 211 RRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp HHHHHHEEEEEEEEEECCCC
T ss_pred HHHHHhcCCCeEEEEEecCC
Confidence 89999999999999977554
No 108
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.71 E-value=1.5e-08 Score=81.84 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=66.9
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH-H
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR-N 81 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~-~ 81 (139)
|+++.+..+.+|+++|+|+++++.|++|++.+|+. ++++++|+.+.+ .. +||+|++|++..... .
T Consensus 304 ~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~---------~~---~fD~Vv~dPPr~g~~~~ 369 (425)
T 2jjq_A 304 FGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS---------VK---GFDTVIVDPPRAGLHPR 369 (425)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC---------CT---TCSEEEECCCTTCSCHH
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC---------cc---CCCEEEEcCCccchHHH
Confidence 56677777789999999999999999999999985 999999998752 24 799999999865443 3
Q ss_pred HHHHHhhcccCCeEEEEe
Q 044253 82 YRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~ 99 (139)
+++.+ ..|+|+|++++.
T Consensus 370 ~~~~l-~~l~p~givyvs 386 (425)
T 2jjq_A 370 LVKRL-NREKPGVIVYVS 386 (425)
T ss_dssp HHHHH-HHHCCSEEEEEE
T ss_pred HHHHH-HhcCCCcEEEEE
Confidence 55555 458999999875
No 109
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.71 E-value=2.1e-08 Score=80.91 Aligned_cols=89 Identities=11% Similarity=0.102 Sum_probs=69.2
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY 82 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~ 82 (139)
|+++.+....+|+++|+|+++++.|++|++.+|+. +++++++|+.+.+..+... .. +||+|++|++.......
T Consensus 300 ~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~~---~~---~fD~Vv~dPPr~g~~~~ 372 (433)
T 1uwv_A 300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWA---KN---GFDKVLLDPARAGAAGV 372 (433)
T ss_dssp THHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGGG---TT---CCSEEEECCCTTCCHHH
T ss_pred HHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhhhhhh---cC---CCCEEEECCCCccHHHH
Confidence 56667767789999999999999999999999985 8999999998754331110 35 79999999987655666
Q ss_pred HHHHhhcccCCeEEEEe
Q 044253 83 RETLMTLFKVGGIVIYD 99 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~ 99 (139)
++.+. .+++++++.+.
T Consensus 373 ~~~l~-~~~p~~ivyvs 388 (433)
T 1uwv_A 373 MQQII-KLEPIRIVYVS 388 (433)
T ss_dssp HHHHH-HHCCSEEEEEE
T ss_pred HHHHH-hcCCCeEEEEE
Confidence 65554 46888888763
No 110
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.69 E-value=1.4e-08 Score=75.19 Aligned_cols=77 Identities=8% Similarity=-0.008 Sum_probs=63.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
..+|+++|+|+++++.|+++++.. | .++++++++|+.+. .+. .. +||+|++|.+ ....+++.+.+.
T Consensus 121 ~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~--~~~-----~~---~~D~v~~~~~--~~~~~l~~~~~~ 187 (258)
T 2pwy_A 121 KGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEA--ELE-----EA---AYDGVALDLM--EPWKVLEKAALA 187 (258)
T ss_dssp TSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGC--CCC-----TT---CEEEEEEESS--CGGGGHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhc--CCC-----CC---CcCEEEECCc--CHHHHHHHHHHh
Confidence 578999999999999999999988 8 46899999999765 121 35 7999999875 345678889999
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+|||.+++..
T Consensus 188 L~~gG~l~~~~ 198 (258)
T 2pwy_A 188 LKPDRFLVAYL 198 (258)
T ss_dssp EEEEEEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 99999998743
No 111
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.69 E-value=2e-08 Score=75.04 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=68.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
+.+|+++|+|+++++.|++++...|+.++++++++|+.+. + .. .+ +||+|++... ..+...+++.+.
T Consensus 84 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~ 153 (273)
T 3bus_A 84 DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-P-FE-----DA---SFDAVWALESLHHMPDRGRALREMA 153 (273)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-SC-----TT---CEEEEEEESCTTTSSCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-C-CC-----CC---CccEEEEechhhhCCCHHHHHHHHH
Confidence 6799999999999999999999999988999999999763 2 11 35 8999998653 234577899999
Q ss_pred hcccCCeEEEEeCCCC
Q 044253 88 TLFKVGGIVIYDNTLW 103 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~ 103 (139)
++|+|||.+++.+...
T Consensus 154 ~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 154 RVLRPGGTVAIADFVL 169 (273)
T ss_dssp TTEEEEEEEEEEEEEE
T ss_pred HHcCCCeEEEEEEeec
Confidence 9999999999876543
No 112
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.68 E-value=1.8e-08 Score=76.94 Aligned_cols=90 Identities=11% Similarity=0.224 Sum_probs=63.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCC-----------------------------------------------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVD----------------------------------------------------- 37 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~----------------------------------------------------- 37 (139)
..+|++||+|+.+++.|++++...+..
T Consensus 70 ~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~ 149 (292)
T 3g07_A 70 PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADT 149 (292)
T ss_dssp CSEEEEEESCHHHHHHHHHTC---------------------------------------------------CCSSTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccchhhhccCcccccccccccccc
Confidence 579999999999999999997765432
Q ss_pred ----CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---c------chHHHHHHHhhcccCCeEEEEeCCCCC
Q 044253 38 ----LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---D------NYRNYRETLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 38 ----~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~------~~~~~~~~~~~lL~~gG~ii~~~~~~~ 104 (139)
++++++++|+......+... ... +||+|++.... . ....+++.+.++|+|||++++..-.|.
T Consensus 150 ~~~p~~v~f~~~d~~~~~~~~~~~--~~~---~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~ 224 (292)
T 3g07_A 150 SVFPNNVVFVTGNYVLDRDDLVEA--QTP---EYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWS 224 (292)
T ss_dssp SSTTTTEEEEECCCCCSSHHHHTT--CCC---CEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHH
T ss_pred ccccccceEEecccccCccccccc--cCC---CcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCch
Confidence 58999999987321111000 035 89999997642 1 345678889999999999999876665
Q ss_pred c
Q 044253 105 G 105 (139)
Q Consensus 105 ~ 105 (139)
.
T Consensus 225 ~ 225 (292)
T 3g07_A 225 S 225 (292)
T ss_dssp H
T ss_pred h
Confidence 3
No 113
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.68 E-value=2.3e-08 Score=73.05 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=61.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcCCCcchH-HHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDAHKDNYR-NYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~~~~~~~-~~~~~~~~ 88 (139)
.+|+++|+|+++++.++++++.. ++++++++|+.+.. ... .+ +||+|++|....... .++..+.+
T Consensus 99 ~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~------~~---~~D~v~~~~~~~~~~~~~l~~~~~ 166 (227)
T 1g8a_A 99 GKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRAL------VP---KVDVIFEDVAQPTQAKILIDNAEV 166 (227)
T ss_dssp SEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTT------CC---CEEEEEECCCSTTHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcc------cC---CceEEEECCCCHhHHHHHHHHHHH
Confidence 68999999999999999998765 57999999997632 111 34 799999998754443 34888999
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
.|+|||++++.
T Consensus 167 ~LkpgG~l~~~ 177 (227)
T 1g8a_A 167 YLKRGGYGMIA 177 (227)
T ss_dssp HEEEEEEEEEE
T ss_pred hcCCCCEEEEE
Confidence 99999999886
No 114
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.67 E-value=2.3e-08 Score=77.20 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=61.0
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV 92 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~ 92 (139)
+|+++|+|+++++.|+++++..|+. +++++++|+.+.+.. .. +||+|+++....... +.+.+.|+|
T Consensus 102 ~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~-------~~---~fD~Iv~~~~~~~~~---~~~~~~Lkp 167 (317)
T 1dl5_A 102 LVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPE-------FS---PYDVIFVTVGVDEVP---ETWFTQLKE 167 (317)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GC---CEEEEEECSBBSCCC---HHHHHHEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhcccc-------CC---CeEEEEEcCCHHHHH---HHHHHhcCC
Confidence 4999999999999999999999985 499999999875321 35 899999998654433 467789999
Q ss_pred CeEEEEeC
Q 044253 93 GGIVIYDN 100 (139)
Q Consensus 93 gG~ii~~~ 100 (139)
||++++..
T Consensus 168 gG~lvi~~ 175 (317)
T 1dl5_A 168 GGRVIVPI 175 (317)
T ss_dssp EEEEEEEB
T ss_pred CcEEEEEE
Confidence 99999863
No 115
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.67 E-value=2.6e-08 Score=74.11 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=62.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc--------CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV--------EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---- 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~--------g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---- 78 (139)
..+|++||+|+.+++.|+++++.+ ++ ++++++++|+.+.++.... .. ++|.|++..+-..
T Consensus 73 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~----~~---~~d~v~~~~p~p~~k~~ 144 (246)
T 2vdv_E 73 EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFE----KG---QLSKMFFCFPDPHFKQR 144 (246)
T ss_dssp TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSC----TT---CEEEEEEESCCCC----
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcc----cc---ccCEEEEECCCcccccc
Confidence 357999999999999999999876 76 4799999999875543211 24 7999987532221
Q ss_pred -------hHHHHHHHhhcccCCeEEEEe
Q 044253 79 -------YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 -------~~~~~~~~~~lL~~gG~ii~~ 99 (139)
+..++..+.++|+|||++++.
T Consensus 145 ~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 145 KHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp --CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 257889999999999999873
No 116
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.67 E-value=2.5e-08 Score=72.37 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=62.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCC----cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDL----KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNY 82 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~----~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~ 82 (139)
.+|+++|+|+++++.|++++...++.+ +++++++|+... +.. .+ +||+|++..... ....+
T Consensus 54 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~------~~---~fD~v~~~~~l~~~~~~~~~~~ 123 (217)
T 3jwh_A 54 EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-DKR------FH---GYDAATVIEVIEHLDLSRLGAF 123 (217)
T ss_dssp SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-CGG------GC---SCSEEEEESCGGGCCHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-ccc------CC---CcCEEeeHHHHHcCCHHHHHHH
Confidence 589999999999999999998888764 899999998432 111 35 899999875322 33577
Q ss_pred HHHHhhcccCCeEEEEeC
Q 044253 83 RETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~ 100 (139)
++.+.++|+|||++++..
T Consensus 124 l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 124 ERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp HHHHHTTTCCSEEEEEEE
T ss_pred HHHHHHHcCCCEEEEEcc
Confidence 888999999999888753
No 117
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=98.67 E-value=1.2e-07 Score=76.32 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=72.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCC--cchHHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNYRETL 86 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~~~~~ 86 (139)
.++|++||+|+++. . ..++++++++|+.+. +..+... .+ +||+|++|+.. .++...++.+
T Consensus 247 ~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dlpf~~~l~~~---d~---sFDlVisdgsH~~~d~~~aL~el 310 (419)
T 3sso_A 247 RGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDAEFLDRIARR---YG---PFDIVIDDGSHINAHVRTSFAAL 310 (419)
T ss_dssp TCEEEEEESSCCGG---------G-CBTTEEEEECCTTCHHHHHHHHHH---HC---CEEEEEECSCCCHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHh---------h-cCCCcEEEEecccccchhhhhhcc---cC---CccEEEECCcccchhHHHHHHHH
Confidence 56899999999982 1 236899999999763 2222211 25 89999999754 2345678899
Q ss_pred hhcccCCeEEEEeCCCCCccccc-ccccCchhhhhchHHHHHHHHHHhh
Q 044253 87 MTLFKVGGIVIYDNTLWGGTVAM-AEEQVPEILRSTRQPNWNLDKLFAS 134 (139)
Q Consensus 87 ~~lL~~gG~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (139)
.++|+|||+++++++........ .....+.+.....+.++++.+.+..
T Consensus 311 ~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~ 359 (419)
T 3sso_A 311 FPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQH 359 (419)
T ss_dssp GGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTG
T ss_pred HHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcc
Confidence 99999999999998873211111 1100012235678888888887654
No 118
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.67 E-value=2.1e-08 Score=76.00 Aligned_cols=83 Identities=7% Similarity=0.068 Sum_probs=68.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
+.+|+++|+|+.+++.|++++...|+.++++++++|+.+. + +. .+ +||+|++... ..+...+++.+.
T Consensus 105 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~ 174 (297)
T 2o57_A 105 GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-CE-----DN---SYDFIWSQDAFLHSPDKLKVFQECA 174 (297)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-SC-----TT---CEEEEEEESCGGGCSCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-C-CC-----CC---CEeEEEecchhhhcCCHHHHHHHHH
Confidence 5689999999999999999999999988999999999764 2 11 35 8999998653 234577899999
Q ss_pred hcccCCeEEEEeCCCC
Q 044253 88 TLFKVGGIVIYDNTLW 103 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~ 103 (139)
++|+|||++++.+...
T Consensus 175 ~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 175 RVLKPRGVMAITDPMK 190 (297)
T ss_dssp HHEEEEEEEEEEEEEE
T ss_pred HHcCCCeEEEEEEecc
Confidence 9999999999875443
No 119
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.66 E-value=1.4e-08 Score=76.76 Aligned_cols=76 Identities=8% Similarity=0.151 Sum_probs=63.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
..+|+++|+++++++.|+++++.. |. ++++++++|+.+.++ .+ +||+|++|.+ ....+++.+.+.
T Consensus 135 ~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~--------~~---~fD~Vi~~~~--~~~~~l~~~~~~ 200 (275)
T 1yb2_A 135 KGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFIS--------DQ---MYDAVIADIP--DPWNHVQKIASM 200 (275)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCC--------SC---CEEEEEECCS--CGGGSHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCc--------CC---CccEEEEcCc--CHHHHHHHHHHH
Confidence 578999999999999999999988 85 579999999976321 35 7999999875 345678899999
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+|||++++..
T Consensus 201 LkpgG~l~i~~ 211 (275)
T 1yb2_A 201 MKPGSVATFYL 211 (275)
T ss_dssp EEEEEEEEEEE
T ss_pred cCCCCEEEEEe
Confidence 99999998754
No 120
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.66 E-value=2.6e-08 Score=72.00 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=66.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~~ 88 (139)
.+|+++|+|+++++.|++++...++. +++++++|+.+. + +. .. +||+|++.... .+...+++.+.+
T Consensus 63 ~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~~ 131 (219)
T 3dh0_A 63 GKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKI-P-LP-----DN---TVDFIFMAFTFHELSEPLKFLEELKR 131 (219)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBC-S-SC-----SS---CEEEEEEESCGGGCSSHHHHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccC-C-CC-----CC---CeeEEEeehhhhhcCCHHHHHHHHHH
Confidence 68999999999999999999999885 799999998764 1 11 35 89999997642 245778899999
Q ss_pred cccCCeEEEEeCCCC
Q 044253 89 LFKVGGIVIYDNTLW 103 (139)
Q Consensus 89 lL~~gG~ii~~~~~~ 103 (139)
+|+|||.+++.+...
T Consensus 132 ~LkpgG~l~i~~~~~ 146 (219)
T 3dh0_A 132 VAKPFAYLAIIDWKK 146 (219)
T ss_dssp HEEEEEEEEEEEECS
T ss_pred HhCCCeEEEEEEecc
Confidence 999999999865433
No 121
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.66 E-value=2.4e-08 Score=72.91 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=61.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
.+|+++|+++++++.|++++...++ .++++++++|+.+........ .. +||+|+++..... +++.+.
T Consensus 110 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---~~---~fD~I~~~~~~~~---~~~~~~ 180 (227)
T 2pbf_A 110 SYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE---LG---LFDAIHVGASASE---LPEILV 180 (227)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH---HC---CEEEEEECSBBSS---CCHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc---CC---CcCEEEECCchHH---HHHHHH
Confidence 4899999999999999999998883 358999999998743110000 35 8999999986543 346778
Q ss_pred hcccCCeEEEEe
Q 044253 88 TLFKVGGIVIYD 99 (139)
Q Consensus 88 ~lL~~gG~ii~~ 99 (139)
++|+|||++++.
T Consensus 181 ~~LkpgG~lv~~ 192 (227)
T 2pbf_A 181 DLLAENGKLIIP 192 (227)
T ss_dssp HHEEEEEEEEEE
T ss_pred HhcCCCcEEEEE
Confidence 999999999875
No 122
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.65 E-value=3.6e-08 Score=79.87 Aligned_cols=83 Identities=20% Similarity=0.186 Sum_probs=65.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY------------ 79 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~------------ 79 (139)
.+|+++|+|+.+++.+++|++..|+. +++++++|+......+. .. +||+|++|++....
T Consensus 285 ~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~-----~~---~fD~Vl~D~Pcsg~g~~~~~pd~~~~ 355 (450)
T 2yxl_A 285 GKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIG-----EE---VADKVLLDAPCTSSGTIGKNPELRWR 355 (450)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSC-----SS---CEEEEEEECCCCCGGGTTTSTTHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhc-----cC---CCCEEEEcCCCCCCeeeccChhhhhh
Confidence 68999999999999999999999984 69999999876522121 25 79999999764221
Q ss_pred -------------HHHHHHHhhcccCCeEEEEeCCCC
Q 044253 80 -------------RNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 80 -------------~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
..+++.+.++|+|||++++.....
T Consensus 356 ~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 356 LREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 456888889999999999765543
No 123
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.65 E-value=2.1e-08 Score=77.87 Aligned_cols=78 Identities=12% Similarity=0.145 Sum_probs=59.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcC----------CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVE----------VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRN 81 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g----------~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~ 81 (139)
.+|+++|+++++++.|++|+...+ ..++++++++|+.+.+..+. .. +||+|++|... ...
T Consensus 131 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~-----~~---~fD~V~~~~~~--~~~ 200 (336)
T 2b25_A 131 GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK-----SL---TFDAVALDMLN--PHV 200 (336)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---------------EEEEEECSSS--TTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC-----CC---CeeEEEECCCC--HHH
Confidence 789999999999999999998643 23589999999987532222 35 79999998753 334
Q ss_pred HHHHHhhcccCCeEEEEe
Q 044253 82 YRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~ 99 (139)
.++.+.+.|+|||.+++-
T Consensus 201 ~l~~~~~~LkpgG~lv~~ 218 (336)
T 2b25_A 201 TLPVFYPHLKHGGVCAVY 218 (336)
T ss_dssp THHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 688899999999999863
No 124
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.65 E-value=6.5e-08 Score=72.01 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=61.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHH------cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKK------VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~------~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------ 78 (139)
...|++||+|+.+++.|+++++. .+. .+++++++|+.+.++.... .. +||.|++..+-..
T Consensus 70 ~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~----~~---~~D~v~~~~~dp~~k~~h~ 141 (235)
T 3ckk_A 70 DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFY----KG---QLTKMFFLFPDPHFKRTKH 141 (235)
T ss_dssp TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCC----TT---CEEEEEEESCC--------
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCC----Cc---CeeEEEEeCCCchhhhhhh
Confidence 56899999999999999998864 344 5799999999875543211 35 8999998643211
Q ss_pred -----hHHHHHHHhhcccCCeEEEEe
Q 044253 79 -----YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 -----~~~~~~~~~~lL~~gG~ii~~ 99 (139)
...+++.+.++|+|||.+++.
T Consensus 142 krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 142 KWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp ---CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 246889999999999999874
No 125
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.65 E-value=4.6e-08 Score=69.39 Aligned_cols=82 Identities=12% Similarity=0.005 Sum_probs=65.3
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYR 80 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~ 80 (139)
..+..+.+++++|+|+.+++.|++++...++. +++++++|+.+. + . .. +||+|++.... ....
T Consensus 49 ~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~-~------~~---~~D~v~~~~~l~~~~~~~~~ 116 (199)
T 2xvm_A 49 YLAANGYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNL-T-F------DR---QYDFILSTVVLMFLEAKTIP 116 (199)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGC-C-C------CC---CEEEEEEESCGGGSCGGGHH
T ss_pred HHHHCCCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhC-C-C------CC---CceEEEEcchhhhCCHHHHH
Confidence 34445679999999999999999999988873 699999998764 1 1 25 89999987532 2456
Q ss_pred HHHHHHhhcccCCeEEEEe
Q 044253 81 NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~ 99 (139)
.+++.+.++|+|||.+++-
T Consensus 117 ~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 117 GLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp HHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEE
Confidence 7889999999999997653
No 126
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.65 E-value=2.8e-08 Score=73.91 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=65.3
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHH
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRE 84 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~ 84 (139)
+....+|+++|+|+++++.|++++...|+. +++++++|+.+. + +. ++ +||+|++.... .+....+.
T Consensus 56 ~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l-~-~~-----~~---~fD~V~~~~~l~~~~d~~~~l~ 124 (260)
T 1vl5_A 56 APFVKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-FT-----DE---RFHIVTCRIAAHHFPNPASFVS 124 (260)
T ss_dssp GGGSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-SC-----TT---CEEEEEEESCGGGCSCHHHHHH
T ss_pred HHhCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC-C-CC-----CC---CEEEEEEhhhhHhcCCHHHHHH
Confidence 334568999999999999999999988874 799999998763 2 21 35 89999987532 34567899
Q ss_pred HHhhcccCCeEEEEeC
Q 044253 85 TLMTLFKVGGIVIYDN 100 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~ 100 (139)
.+.+.|+|||++++.+
T Consensus 125 ~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 125 EAYRVLKKGGQLLLVD 140 (260)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHHcCCCCEEEEEE
Confidence 9999999999998854
No 127
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.64 E-value=5e-08 Score=76.53 Aligned_cols=83 Identities=12% Similarity=0.122 Sum_probs=65.7
Q ss_pred hhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Ccc
Q 044253 6 ESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KDN 78 (139)
Q Consensus 6 ~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~~ 78 (139)
..+..+ .+|+++|+| ++++.|+++++.+|+.++++++++|+.+. .+. .+ +||+|+++.. ...
T Consensus 83 ~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-----~~---~fD~Iis~~~~~~l~~~~~ 151 (349)
T 3q7e_A 83 FAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV--ELP-----VE---KVDIIISEWMGYCLFYESM 151 (349)
T ss_dssp HHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC--CCS-----SS---CEEEEEECCCBBTBTBTCC
T ss_pred HHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc--cCC-----CC---ceEEEEEccccccccCchh
Confidence 344444 489999999 59999999999999988899999999875 221 35 8999999752 234
Q ss_pred hHHHHHHHhhcccCCeEEEEe
Q 044253 79 YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~ 99 (139)
...++..+.++|+|||+++.+
T Consensus 152 ~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 152 LNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp HHHHHHHHHHHEEEEEEEESC
T ss_pred HHHHHHHHHHhCCCCCEEccc
Confidence 566788888999999999854
No 128
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.64 E-value=1.3e-08 Score=73.84 Aligned_cols=84 Identities=12% Similarity=-0.027 Sum_probs=59.9
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcC-----------CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEc
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVE-----------VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVD 73 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g-----------~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D 73 (139)
...+..+.+|++||+|++|++.|+++..... ...+++++++|+.+.-..- .+ +||+|+..
T Consensus 38 ~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~------~~---~fD~v~~~ 108 (203)
T 1pjz_A 38 SWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD------IG---HCAAFYDR 108 (203)
T ss_dssp HHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH------HH---SEEEEEEE
T ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc------CC---CEEEEEEC
Confidence 3455567899999999999999998764310 1257999999998752110 15 89999975
Q ss_pred CCC-----cchHHHHHHHhhcccCCeEEE
Q 044253 74 AHK-----DNYRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 74 ~~~-----~~~~~~~~~~~~lL~~gG~ii 97 (139)
... .....++..+.++|+|||+++
T Consensus 109 ~~l~~l~~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 109 AAMIALPADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred cchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 422 123457888999999999833
No 129
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.64 E-value=4.5e-08 Score=73.31 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=68.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
+.+|+++|+|+.+++.|++++...+.. +++++++|+.+. + .. .+ +||+|++... ..+...+++.+.
T Consensus 61 ~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~ 129 (276)
T 3mgg_A 61 DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSL-P-FE-----DS---SFDHIFVCFVLEHLQSPEEALKSLK 129 (276)
T ss_dssp TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGC-C-SC-----TT---CEEEEEEESCGGGCSCHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccC-C-CC-----CC---CeeEEEEechhhhcCCHHHHHHHHH
Confidence 578999999999999999999999884 799999999864 2 11 35 8999998753 234567889999
Q ss_pred hcccCCeEEEEeCCCCCcc
Q 044253 88 TLFKVGGIVIYDNTLWGGT 106 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~~~~ 106 (139)
++|+|||++++.+......
T Consensus 130 ~~L~pgG~l~~~~~~~~~~ 148 (276)
T 3mgg_A 130 KVLKPGGTITVIEGDHGSC 148 (276)
T ss_dssp HHEEEEEEEEEEEECGGGC
T ss_pred HHcCCCcEEEEEEcCCCCc
Confidence 9999999999876554333
No 130
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.63 E-value=4e-08 Score=74.00 Aligned_cols=80 Identities=11% Similarity=0.080 Sum_probs=64.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-------cchHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-------DNYRNYRE 84 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-------~~~~~~~~ 84 (139)
.+|+++|+|+++++.|++++...+...+++++++|+.+. +... .+ +||+|++.... .....+++
T Consensus 88 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~-----~~---~fD~v~~~~~l~~~~~~~~~~~~~l~ 158 (298)
T 1ri5_A 88 GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-HMDL-----GK---EFDVISSQFSFHYAFSTSESLDIAQR 158 (298)
T ss_dssp SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-CCCC-----SS---CEEEEEEESCGGGGGSSHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-ccCC-----CC---CcCEEEECchhhhhcCCHHHHHHHHH
Confidence 389999999999999999999888877899999999764 1101 35 89999987542 23456788
Q ss_pred HHhhcccCCeEEEEeC
Q 044253 85 TLMTLFKVGGIVIYDN 100 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~ 100 (139)
.+.++|+|||++++..
T Consensus 159 ~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 159 NIARHLRPGGYFIMTV 174 (298)
T ss_dssp HHHHTEEEEEEEEEEE
T ss_pred HHHHhcCCCCEEEEEE
Confidence 8889999999998753
No 131
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.63 E-value=1.2e-07 Score=76.35 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=65.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------- 78 (139)
.+|+++|+|+.+++.+++|++..|+. ++++++|+......+. .. +||+|++|++...
T Consensus 271 ~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~-----~~---~fD~Vl~D~Pcsg~g~~~~~p~~~~~ 340 (429)
T 1sqg_A 271 AQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCG-----EQ---QFDRILLDAPCSATGVIRRHPDIKWL 340 (429)
T ss_dssp CEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHT-----TC---CEEEEEEECCCCCGGGTTTCTTHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcc-----cC---CCCEEEEeCCCCcccccCCCcchhhc
Confidence 68999999999999999999999973 7999999987643231 35 7999999986431
Q ss_pred ------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 79 ------------YRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 79 ------------~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
...+++.+.++|+|||++++....+
T Consensus 341 ~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 341 RRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1356788889999999999866443
No 132
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.63 E-value=5.2e-08 Score=71.97 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=65.2
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------cc
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------DN 78 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------~~ 78 (139)
+..+..+.+|+++|+|+++++.|++++...+. +++++++|+.+. + . .. +||+|++.... ..
T Consensus 57 ~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~-~-~------~~---~fD~v~~~~~~~~~~~~~~ 123 (252)
T 1wzn_A 57 LELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEI-A-F------KN---EFDAVTMFFSTIMYFDEED 123 (252)
T ss_dssp HHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGC-C-C------CS---CEEEEEECSSGGGGSCHHH
T ss_pred HHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhc-c-c------CC---CccEEEEcCCchhcCCHHH
Confidence 34455577999999999999999999988875 699999999864 1 1 35 89999975321 23
Q ss_pred hHHHHHHHhhcccCCeEEEEeC
Q 044253 79 YRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
...+++.+.+.|+|||+++++-
T Consensus 124 ~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 124 LRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEec
Confidence 4567888889999999999863
No 133
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.62 E-value=5.6e-08 Score=77.45 Aligned_cols=84 Identities=8% Similarity=0.075 Sum_probs=65.5
Q ss_pred hhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Cc
Q 044253 5 LESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KD 77 (139)
Q Consensus 5 ~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~ 77 (139)
+-+|+.++ +|++||.|+ +++.|+++++.+|+.++|+++++++.+. .+ .+ +||+|+.+.- ..
T Consensus 99 ~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~--~l------pe---~~DvivsE~~~~~l~~e~ 166 (376)
T 4hc4_A 99 IFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV--EL------PE---QVDAIVSEWMGYGLLHES 166 (376)
T ss_dssp HHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SS---CEEEEECCCCBTTBTTTC
T ss_pred HHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee--cC------Cc---cccEEEeecccccccccc
Confidence 44555554 799999996 8999999999999999999999999875 22 35 8999998541 12
Q ss_pred chHHHHHHHhhcccCCeEEEEeC
Q 044253 78 NYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
....++....++|+|||.++.+.
T Consensus 167 ~l~~~l~a~~r~Lkp~G~~iP~~ 189 (376)
T 4hc4_A 167 MLSSVLHARTKWLKEGGLLLPAS 189 (376)
T ss_dssp SHHHHHHHHHHHEEEEEEEESCE
T ss_pred hhhhHHHHHHhhCCCCceECCcc
Confidence 34566677778999999998543
No 134
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=98.62 E-value=2.4e-08 Score=76.69 Aligned_cols=86 Identities=10% Similarity=0.076 Sum_probs=67.0
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chH
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYR 80 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~ 80 (139)
|+++...+.++++||.+++.++..++|++. .++++++++|+...+..+... .. +||+||+||++. .+.
T Consensus 106 giEaLS~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~---~~---~fdLVfiDPPYe~k~~~~ 176 (283)
T 2oo3_A 106 AINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPP---PE---KRGLIFIDPSYERKEEYK 176 (283)
T ss_dssp HHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSC---TT---SCEEEEECCCCCSTTHHH
T ss_pred HHHHcCCCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCC---CC---CccEEEECCCCCCCcHHH
Confidence 445555678999999999999999999975 368999999999988765322 24 699999999865 455
Q ss_pred HHHHHHhh--cccCCeEEEE
Q 044253 81 NYRETLMT--LFKVGGIVIY 98 (139)
Q Consensus 81 ~~~~~~~~--lL~~gG~ii~ 98 (139)
..++.+.+ .+.++|++++
T Consensus 177 ~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 177 EIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp HHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHhCccCCCeEEEE
Confidence 66665553 6778898874
No 135
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.61 E-value=1.2e-08 Score=75.93 Aligned_cols=83 Identities=10% Similarity=0.175 Sum_probs=56.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH-HHHhhHHhhhcccCCCceeEEEEcCCCcchH---------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP-ALDQLLKDEKIHFFFENFDYAFVDAHKDNYR--------- 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~-~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~--------- 80 (139)
..+|+++|+|+++++.|++|+..+++.++++++++|+.+ .+..+... ... +||+|+++++.....
T Consensus 89 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~~---~fD~i~~npp~~~~~~~~~~~~~~ 163 (254)
T 2h00_A 89 GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEE--SEI---IYDFCMCNPPFFANQLEAKGVNSR 163 (254)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTC--CSC---CBSEEEECCCCC------------
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcc--cCC---cccEEEECCCCccCcchhcccccc
Confidence 578999999999999999999999998789999999765 22222100 014 799999997543211
Q ss_pred ---------HHHHHHhhcccCCeEEEE
Q 044253 81 ---------NYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 81 ---------~~~~~~~~lL~~gG~ii~ 98 (139)
.++..+.++|+|||.+.+
T Consensus 164 ~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 164 NPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp -------------CTTTTHHHHTHHHH
T ss_pred cccccCCHHHHhhhHHHHEecCCEEEE
Confidence 123445567778777643
No 136
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.61 E-value=4.5e-08 Score=74.48 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=64.4
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHH-hhhcccCCCceeEEEEcCCC--cchHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLK-DEKIHFFFENFDYAFVDAHK--DNYRNYRET 85 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~-~~~~~~~~~~fD~If~D~~~--~~~~~~~~~ 85 (139)
...+|+++|+|+.+++.|+++++.. +...+++++++|+.+.- ... .....+ +||+|++.... -+...+++.
T Consensus 60 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~---~fD~V~~~~~l~~~~~~~~l~~ 134 (299)
T 3g5t_A 60 PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK--FLGADSVDKQ---KIDMITAVECAHWFDFEKFQRS 134 (299)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG--GGCTTTTTSS---CEEEEEEESCGGGSCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC--ccccccccCC---CeeEEeHhhHHHHhCHHHHHHH
Confidence 5678999999999999999999987 55578999999997642 110 000015 89999987532 156778899
Q ss_pred HhhcccCCeEEEE
Q 044253 86 LMTLFKVGGIVIY 98 (139)
Q Consensus 86 ~~~lL~~gG~ii~ 98 (139)
+.++|+|||.+++
T Consensus 135 ~~~~LkpgG~l~i 147 (299)
T 3g5t_A 135 AYANLRKDGTIAI 147 (299)
T ss_dssp HHHHEEEEEEEEE
T ss_pred HHHhcCCCcEEEE
Confidence 9999999999987
No 137
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.61 E-value=4.4e-08 Score=70.82 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=60.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
.+|+++|+|+++++.|++++...++. +++++++|+...+.. .. +||+|+++....... +.+.++|+
T Consensus 103 ~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~---~fD~v~~~~~~~~~~---~~~~~~L~ 168 (215)
T 2yxe_A 103 GLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEP-------LA---PYDRIYTTAAGPKIP---EPLIRQLK 168 (215)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGG-------GC---CEEEEEESSBBSSCC---HHHHHTEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCC-------CC---CeeEEEECCchHHHH---HHHHHHcC
Confidence 78999999999999999999998884 599999998543221 35 899999987544333 46789999
Q ss_pred CCeEEEEeC
Q 044253 92 VGGIVIYDN 100 (139)
Q Consensus 92 ~gG~ii~~~ 100 (139)
|||++++.-
T Consensus 169 pgG~lv~~~ 177 (215)
T 2yxe_A 169 DGGKLLMPV 177 (215)
T ss_dssp EEEEEEEEE
T ss_pred CCcEEEEEE
Confidence 999998753
No 138
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.61 E-value=2.5e-08 Score=72.13 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=63.3
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------ch
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------NY 79 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------~~ 79 (139)
..+..+.+|+++|+|+++++.|++++...+ +++++++|+.+.. . .+ +||+|++..... ..
T Consensus 68 ~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~--~------~~---~fD~v~~~~~l~~~~~~~~~ 133 (216)
T 3ofk_A 68 KLAPHCKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS--T------AE---LFDLIVVAEVLYYLEDMTQM 133 (216)
T ss_dssp HHGGGEEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC--C------SC---CEEEEEEESCGGGSSSHHHH
T ss_pred HHHHcCCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC--C------CC---CccEEEEccHHHhCCCHHHH
Confidence 344456789999999999999999987643 7999999998753 1 46 899999975321 22
Q ss_pred HHHHHHHhhcccCCeEEEEeC
Q 044253 80 RNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~~ 100 (139)
...++.+.++|+|||++++..
T Consensus 134 ~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 134 RTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp HHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 456888999999999999854
No 139
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.61 E-value=3.5e-08 Score=72.80 Aligned_cols=85 Identities=12% Similarity=0.174 Sum_probs=67.2
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYR 83 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~ 83 (139)
.+....+|+++|+|+++++.|++++...++. +++++++|+... + +. .+ +||+|++.... .+....+
T Consensus 39 l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l 107 (239)
T 1xxl_A 39 FSPYVQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P-FP-----DD---SFDIITCRYAAHHFSDVRKAV 107 (239)
T ss_dssp HGGGSSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C-SC-----TT---CEEEEEEESCGGGCSCHHHHH
T ss_pred HHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC-C-CC-----CC---cEEEEEECCchhhccCHHHHH
Confidence 3444568999999999999999999988874 799999998653 2 11 35 89999987532 3457788
Q ss_pred HHHhhcccCCeEEEEeCCC
Q 044253 84 ETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~~~ 102 (139)
..+.+.|+|||++++.+..
T Consensus 108 ~~~~~~LkpgG~l~~~~~~ 126 (239)
T 1xxl_A 108 REVARVLKQDGRFLLVDHY 126 (239)
T ss_dssp HHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHcCCCcEEEEEEcC
Confidence 9999999999999885443
No 140
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.61 E-value=7.2e-08 Score=76.31 Aligned_cols=83 Identities=18% Similarity=0.105 Sum_probs=63.4
Q ss_pred chhhhhhhc--ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc----
Q 044253 4 NLESTFFIY--FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---- 77 (139)
Q Consensus 4 ~~~~~~~~~--~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---- 77 (139)
+++.+..+. +|+++|+|+.+++.|++|++.+|+.++++++++|+.+.. .. .+ +||+|++|++..
T Consensus 232 ~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~-~~------~~---~fD~Ii~npPyg~r~~ 301 (373)
T 3tm4_A 232 LIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS-QY------VD---SVDFAISNLPYGLKIG 301 (373)
T ss_dssp HHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG-GT------CS---CEEEEEEECCCC----
T ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-cc------cC---CcCEEEECCCCCcccC
Confidence 455666665 899999999999999999999999778999999998852 11 35 899999998632
Q ss_pred -------chHHHHHHHhhcccCCeEEE
Q 044253 78 -------NYRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 78 -------~~~~~~~~~~~lL~~gG~ii 97 (139)
.|..+++.+.+.| .|+.++
T Consensus 302 ~~~~~~~ly~~~~~~l~r~l-~g~~~~ 327 (373)
T 3tm4_A 302 KKSMIPDLYMKFFNELAKVL-EKRGVF 327 (373)
T ss_dssp --CCHHHHHHHHHHHHHHHE-EEEEEE
T ss_pred cchhHHHHHHHHHHHHHHHc-CCeEEE
Confidence 1355667777777 333333
No 141
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.61 E-value=2.5e-08 Score=77.06 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=64.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHc--C-C-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKV--E-V-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYR 80 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~--g-~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~ 80 (139)
.+|+.||+|++.++.+++.+... + + .+|++++.+|+..++... .+ +||+|++|..-. .-.
T Consensus 108 ~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~------~~---~yDvIi~D~~dp~~~~~~L~t~ 178 (294)
T 3o4f_A 108 ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT------SQ---TFDVIISDCTDPIGPGESLFTS 178 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS------SC---CEEEEEESCCCCCCTTCCSSCC
T ss_pred ceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc------cc---cCCEEEEeCCCcCCCchhhcCH
Confidence 57999999999999999997542 2 2 469999999999998653 46 899999996311 225
Q ss_pred HHHHHHhhcccCCeEEEEe
Q 044253 81 NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~ 99 (139)
.+++.+.+.|+|||+++..
T Consensus 179 eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 179 AFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp HHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEe
Confidence 6889999999999999974
No 142
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.61 E-value=5.9e-08 Score=71.50 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=61.0
Q ss_pred hhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 8 TFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 8 ~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
+... .+|+++|+++++++.|++++...|+. +++++.+|+...++. .. +||+|+++....... +.+
T Consensus 110 a~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~---~fD~Ii~~~~~~~~~---~~~ 175 (235)
T 1jg1_A 110 SEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPP-------KA---PYDVIIVTAGAPKIP---EPL 175 (235)
T ss_dssp HHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GC---CEEEEEECSBBSSCC---HHH
T ss_pred HHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCC-------CC---CccEEEECCcHHHHH---HHH
Confidence 3334 79999999999999999999999985 599999998332211 24 699999987644332 367
Q ss_pred hhcccCCeEEEEeC
Q 044253 87 MTLFKVGGIVIYDN 100 (139)
Q Consensus 87 ~~lL~~gG~ii~~~ 100 (139)
.+.|+|||++++.-
T Consensus 176 ~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 176 IEQLKIGGKLIIPV 189 (235)
T ss_dssp HHTEEEEEEEEEEE
T ss_pred HHhcCCCcEEEEEE
Confidence 78999999998753
No 143
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.60 E-value=3e-08 Score=74.52 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=63.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc-C-CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV-E-VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~-g-~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
..+|+++|+|+++++.|+++++.. | +.++++++++|+.+.. +. .. +||+|+++.+ ....+++.+.+
T Consensus 124 ~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~--~~-----~~---~~D~v~~~~~--~~~~~l~~~~~ 191 (280)
T 1i9g_A 124 AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE--LP-----DG---SVDRAVLDML--APWEVLDAVSR 191 (280)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC--CC-----TT---CEEEEEEESS--CGGGGHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC--CC-----CC---ceeEEEECCc--CHHHHHHHHHH
Confidence 578999999999999999999887 5 4568999999997651 11 35 8999999875 34567888999
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
.|+|||++++.
T Consensus 192 ~L~pgG~l~~~ 202 (280)
T 1i9g_A 192 LLVAGGVLMVY 202 (280)
T ss_dssp HEEEEEEEEEE
T ss_pred hCCCCCEEEEE
Confidence 99999999874
No 144
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.60 E-value=4.8e-08 Score=73.53 Aligned_cols=85 Identities=9% Similarity=-0.027 Sum_probs=61.6
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHH----------cC------CCCcEEEEeCChHHHHHhhHHhhhcccCCCcee
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKK----------VE------VDLKINLMESRALPALDQLLKDEKIHFFFENFD 68 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~----------~g------~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD 68 (139)
...+..+.+|++||+|+.+++.|++.... .+ ...+++++++|+.+.-... .+ +||
T Consensus 84 ~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~------~~---~FD 154 (252)
T 2gb4_A 84 KWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRAN------IG---KFD 154 (252)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGC------CC---CEE
T ss_pred HHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCccc------CC---CEE
Confidence 44566688999999999999999876531 00 1257999999998752110 15 899
Q ss_pred EEEEcCC-----CcchHHHHHHHhhcccCCeEEEE
Q 044253 69 YAFVDAH-----KDNYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 69 ~If~D~~-----~~~~~~~~~~~~~lL~~gG~ii~ 98 (139)
+|+.-.. ......++..+.++|+|||++++
T Consensus 155 ~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 155 RIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp EEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 9996542 12345688999999999999864
No 145
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.59 E-value=3.1e-08 Score=71.81 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=62.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCC----cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDL----KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNY 82 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~----~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~ 82 (139)
.+|+++|+|+++++.|++++...++.+ +++++++|+... +. . .+ +||+|++..... ....+
T Consensus 54 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~-~-----~~---~fD~V~~~~~l~~~~~~~~~~~ 123 (219)
T 3jwg_A 54 EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-DK-R-----FS---GYDAATVIEVIEHLDENRLQAF 123 (219)
T ss_dssp CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-CG-G-----GT---TCSEEEEESCGGGCCHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-cc-c-----cC---CCCEEEEHHHHHhCCHHHHHHH
Confidence 689999999999999999998887754 899999998432 11 1 35 899999865322 22467
Q ss_pred HHHHhhcccCCeEEEEeC
Q 044253 83 RETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~ 100 (139)
++.+.+.|+|||+++...
T Consensus 124 l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 124 EKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp HHHHHTTTCCSEEEEEEE
T ss_pred HHHHHHhhCCCEEEEEcc
Confidence 888999999999887653
No 146
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.59 E-value=2.6e-08 Score=75.79 Aligned_cols=89 Identities=10% Similarity=0.117 Sum_probs=68.0
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCC--CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC------C
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVD--LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA------H 75 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~--~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~------~ 75 (139)
+...+..+.+|+++|+|+.+++.|++++...+.. .+++++++|+.+. + . .+ +||+|++.. +
T Consensus 97 ~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~-~------~~---~fD~v~~~~~~~~~~~ 165 (299)
T 3g2m_A 97 TFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-A-L------DK---RFGTVVISSGSINELD 165 (299)
T ss_dssp HHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-C-C------SC---CEEEEEECHHHHTTSC
T ss_pred HHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-C-c------CC---CcCEEEECCcccccCC
Confidence 3444555789999999999999999999887642 5799999999874 2 1 35 899998642 1
Q ss_pred CcchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 76 KDNYRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 76 ~~~~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
......+++.+.++|+|||++++.....
T Consensus 166 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 166 EADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 1124678889999999999999865443
No 147
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.59 E-value=6.7e-08 Score=75.58 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=64.4
Q ss_pred hhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Cc
Q 044253 5 LESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KD 77 (139)
Q Consensus 5 ~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~ 77 (139)
+..+..+. +|+++|+|+ +++.|+++++.+|+.++++++++|+.+. .+. .+ +||+|+++.. ..
T Consensus 80 ~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~-----~~---~~D~Ivs~~~~~~l~~~~ 148 (340)
T 2fyt_A 80 MFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV--HLP-----VE---KVDVIISEWMGYFLLFES 148 (340)
T ss_dssp HHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS--CCS-----CS---CEEEEEECCCBTTBTTTC
T ss_pred HHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh--cCC-----CC---cEEEEEEcCchhhccCHH
Confidence 33444444 899999996 9999999999999978999999999864 121 35 8999998761 12
Q ss_pred chHHHHHHHhhcccCCeEEEE
Q 044253 78 NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii~ 98 (139)
....++..+.++|+|||+++.
T Consensus 149 ~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 149 MLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp HHHHHHHHHHHHEEEEEEEES
T ss_pred HHHHHHHHHHhhcCCCcEEEc
Confidence 345577888899999999984
No 148
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=98.58 E-value=7.1e-08 Score=70.46 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=65.0
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CC------c
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HK------D 77 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~------~ 77 (139)
...+..+.+++++|+|+.+++.|++++...+. +++++++|+.+. + . .+ +||+|++.. .. .
T Consensus 53 ~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~-~------~~---~fD~v~~~~~~l~~~~~~~ 119 (246)
T 1y8c_A 53 ENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNL-N-I------NR---KFDLITCCLDSTNYIIDSD 119 (246)
T ss_dssp HHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGC-C-C------SC---CEEEEEECTTGGGGCCSHH
T ss_pred HHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccC-C-c------cC---CceEEEEcCccccccCCHH
Confidence 34444567899999999999999999988775 699999999764 1 1 24 899999975 22 2
Q ss_pred chHHHHHHHhhcccCCeEEEEe
Q 044253 78 NYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
.....++.+.++|+|||+++++
T Consensus 120 ~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 120 DLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEE
Confidence 3456788888999999999984
No 149
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.58 E-value=1.6e-07 Score=67.07 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=66.4
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNY 82 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~ 82 (139)
..+..+.+|+++|+|+++++.|++++...+. +++++++|+.+. + +. .+ +||+|++.... .....+
T Consensus 46 ~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~~~~~~~~~~~ 113 (202)
T 2kw5_A 46 FLASLGYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADF-D-IV-----AD---AWEGIVSIFCHLPSSLRQQL 113 (202)
T ss_dssp HHHTTTCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTB-S-CC-----TT---TCSEEEEECCCCCHHHHHHH
T ss_pred HHHhCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhc-C-CC-----cC---CccEEEEEhhcCCHHHHHHH
Confidence 3344467999999999999999999988876 699999998764 1 21 35 89999985432 234567
Q ss_pred HHHHhhcccCCeEEEEeCCCC
Q 044253 83 RETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~~~ 103 (139)
++.+.++|+|||.+++.....
T Consensus 114 l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 114 YPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp HHHHHTTCCSSEEEEEEEECT
T ss_pred HHHHHHhcCCCcEEEEEEecc
Confidence 888899999999999875443
No 150
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.56 E-value=5.1e-08 Score=70.66 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=64.8
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--Cc---chHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KD---NYRN 81 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~---~~~~ 81 (139)
.+..+.+++++|+|+++++.|++++...+ .+++++++|+.+. + +. .+ +||+|++... .. +...
T Consensus 56 l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~-~~-----~~---~~D~v~~~~~~~~~~~~~~~~ 123 (227)
T 1ve3_A 56 LEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKL-S-FE-----DK---TFDYVIFIDSIVHFEPLELNQ 123 (227)
T ss_dssp HHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSC-C-SC-----TT---CEEEEEEESCGGGCCHHHHHH
T ss_pred HHHcCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcC-C-CC-----CC---cEEEEEEcCchHhCCHHHHHH
Confidence 34445589999999999999999998877 5799999998763 1 11 35 8999999765 22 3356
Q ss_pred HHHHHhhcccCCeEEEEeCC
Q 044253 82 YRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~~ 101 (139)
+++.+.+.|+|||.+++...
T Consensus 124 ~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 124 VFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp HHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEec
Confidence 78888899999999987644
No 151
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.56 E-value=9.8e-08 Score=74.20 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=65.1
Q ss_pred hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC------Cc
Q 044253 5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH------KD 77 (139)
Q Consensus 5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~------~~ 77 (139)
+..+..+ .+|+++|+| .+++.|+++++.+|+.++++++++|+.+. . +. .+ +||+|+++.. ..
T Consensus 54 ~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~-----~~---~~D~Ivs~~~~~~l~~~~ 122 (328)
T 1g6q_1 54 MFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-H-LP-----FP---KVDIIISEWMGYFLLYES 122 (328)
T ss_dssp HHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-C-CS-----SS---CEEEEEECCCBTTBSTTC
T ss_pred HHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc-c-CC-----CC---cccEEEEeCchhhcccHH
Confidence 3344444 489999999 69999999999999988999999999864 1 21 25 8999999752 12
Q ss_pred chHHHHHHHhhcccCCeEEEEe
Q 044253 78 NYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
....++..+.++|+|||+++.+
T Consensus 123 ~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 123 MMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp CHHHHHHHHHHHEEEEEEEESC
T ss_pred HHHHHHHHHHhhcCCCeEEEEe
Confidence 3456778888999999999843
No 152
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.56 E-value=8.2e-08 Score=69.97 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=60.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
.+|+++|+|+.+++.|++++...+. .++++++++|+...... .. +||+|+++..... +++.+.
T Consensus 103 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~---~fD~i~~~~~~~~---~~~~~~ 169 (226)
T 1i1n_A 103 GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-------EA---PYDAIHVGAAAPV---VPQALI 169 (226)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-------GC---CEEEEEECSBBSS---CCHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc-------CC---CcCEEEECCchHH---HHHHHH
Confidence 5899999999999999999998764 45799999998753211 35 8999999986533 345778
Q ss_pred hcccCCeEEEEeC
Q 044253 88 TLFKVGGIVIYDN 100 (139)
Q Consensus 88 ~lL~~gG~ii~~~ 100 (139)
++|+|||++++..
T Consensus 170 ~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 170 DQLKPGGRLILPV 182 (226)
T ss_dssp HTEEEEEEEEEEE
T ss_pred HhcCCCcEEEEEE
Confidence 9999999998853
No 153
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.55 E-value=1.3e-07 Score=74.12 Aligned_cols=83 Identities=11% Similarity=0.060 Sum_probs=64.8
Q ss_pred hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----Ccc
Q 044253 5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDN 78 (139)
Q Consensus 5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~ 78 (139)
+..+..+ .+|++||+|+ +++.|+++++.+|+.++++++++|+.+. .+ .+ +||+|++... ...
T Consensus 66 ~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~------~~---~~D~Ivs~~~~~~~~~~~ 133 (348)
T 2y1w_A 66 FFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV--SL------PE---QVDIIISEPMGYMLFNER 133 (348)
T ss_dssp HHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SS---CEEEEEECCCBTTBTTTS
T ss_pred HHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC--CC------CC---ceeEEEEeCchhcCChHH
Confidence 3344444 4899999996 8999999999999988999999998764 12 35 8999999853 123
Q ss_pred hHHHHHHHhhcccCCeEEEEe
Q 044253 79 YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~ 99 (139)
....+..+.++|+|||++++.
T Consensus 134 ~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 134 MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp HHHHHHHGGGGEEEEEEEESC
T ss_pred HHHHHHHHHhhcCCCeEEEEe
Confidence 456677788999999999854
No 154
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.55 E-value=7.5e-08 Score=76.99 Aligned_cols=53 Identities=8% Similarity=-0.016 Sum_probs=47.2
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
+|+++|+|+.+++.|++|++.+|+.++++++++|+.+... .. +||+|++||+.
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--------~~---~fD~Iv~NPPY 317 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--------ED---EYGVVVANPPY 317 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--------CC---CSCEEEECCCC
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--------CC---CCCEEEECCCC
Confidence 5999999999999999999999998889999999987521 35 89999999985
No 155
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=98.54 E-value=3.6e-08 Score=71.59 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=66.2
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---c
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---N 78 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~ 78 (139)
..+..+.+|+++|+|+.+++.|++++...++ .++++++++|+... + .. .+ +||+|++..... +
T Consensus 47 ~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~-----~~---~~D~v~~~~~l~~~~~ 116 (235)
T 3sm3_A 47 ELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-S-FH-----DS---SFDFAVMQAFLTSVPD 116 (235)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-C-SC-----TT---CEEEEEEESCGGGCCC
T ss_pred HHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-C-CC-----CC---ceeEEEEcchhhcCCC
Confidence 3444577999999999999999999988776 34699999998764 2 11 35 899999875322 2
Q ss_pred hH---HHHHHHhhcccCCeEEEEeCC
Q 044253 79 YR---NYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 79 ~~---~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.. .+++.+.++|+|||.+++...
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 117 PKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 23 688899999999999988643
No 156
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.54 E-value=6.8e-08 Score=70.56 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=61.0
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.+..+.+|+++|+|+++++.|++++...+ +++++++|+.+.+.. .. +||+|+++....... +.+
T Consensus 88 l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~-------~~---~fD~v~~~~~~~~~~---~~~ 151 (231)
T 1vbf_A 88 IAEIVDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEE-------EK---PYDRVVVWATAPTLL---CKP 151 (231)
T ss_dssp HHHHSSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGG-------GC---CEEEEEESSBBSSCC---HHH
T ss_pred HHHHcCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccccccc-------CC---CccEEEECCcHHHHH---HHH
Confidence 33445789999999999999999998776 799999999763221 35 899999987544332 467
Q ss_pred hhcccCCeEEEEeC
Q 044253 87 MTLFKVGGIVIYDN 100 (139)
Q Consensus 87 ~~lL~~gG~ii~~~ 100 (139)
.++|+|||++++..
T Consensus 152 ~~~L~pgG~l~~~~ 165 (231)
T 1vbf_A 152 YEQLKEGGIMILPI 165 (231)
T ss_dssp HHTEEEEEEEEEEE
T ss_pred HHHcCCCcEEEEEE
Confidence 78999999998753
No 157
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.54 E-value=1.1e-07 Score=75.89 Aligned_cols=74 Identities=9% Similarity=-0.054 Sum_probs=56.4
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHHHHHH
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRNYRET 85 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~~~~~ 85 (139)
+|+++|+|+++++.|++|++.+|+.++++++++|+.+... .. +||+|++||++. ....++..
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--------~~---~fD~Iv~NPPYG~rl~~~~~l~~ly~~ 326 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--------NK---INGVLISNPPYGERLLDDKAVDILYNE 326 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--------CC---CSCEEEECCCCTTTTSCHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--------cC---CcCEEEECCchhhccCCHHHHHHHHHH
Confidence 4999999999999999999999998889999999987521 35 899999999753 22334444
Q ss_pred HhhcccC--CeEEE
Q 044253 86 LMTLFKV--GGIVI 97 (139)
Q Consensus 86 ~~~lL~~--gG~ii 97 (139)
+.+.|++ ||.+.
T Consensus 327 lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 327 MGETFAPLKTWSQF 340 (384)
T ss_dssp HHHHHTTCTTSEEE
T ss_pred HHHHHhhCCCcEEE
Confidence 4444444 66543
No 158
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.53 E-value=1.1e-07 Score=69.94 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=62.5
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYR 80 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~ 80 (139)
..+..+.+|+++|+|+++++.|+++ ++++++|+.+.+..+. .+ +||+|++.... ....
T Consensus 58 ~l~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~-----~~---~fD~i~~~~~l~~~~~~~~~ 120 (240)
T 3dli_A 58 LCKEEGIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLP-----DK---YLDGVMISHFVEHLDPERLF 120 (240)
T ss_dssp HHHHHTCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSC-----TT---CBSEEEEESCGGGSCGGGHH
T ss_pred HHHhCCCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcC-----CC---CeeEEEECCchhhCCcHHHH
Confidence 3344577899999999999999876 7899999998764442 35 89999986532 2457
Q ss_pred HHHHHHhhcccCCeEEEEeCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.+++.+.+.|+|||++++...
T Consensus 121 ~~l~~~~~~LkpgG~l~~~~~ 141 (240)
T 3dli_A 121 ELLSLCYSKMKYSSYIVIESP 141 (240)
T ss_dssp HHHHHHHHHBCTTCCEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEeC
Confidence 889999999999999998644
No 159
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.53 E-value=5.7e-08 Score=73.55 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=55.2
Q ss_pred CchhhhhhhcceeEEeCCc-------cHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 3 FNLESTFFIYFIVAIDVSR-------ESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~-------~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
+++..+..+.+|+++|+|+ ++++.|++|++.+++.++++++++|+.++++.+... .. +||+|++|+.
T Consensus 97 ~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~---~~---~fD~V~~dP~ 170 (258)
T 2r6z_A 97 DSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT---QG---KPDIVYLDPM 170 (258)
T ss_dssp HHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH---HC---CCSEEEECCC
T ss_pred HHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc---CC---CccEEEECCC
Confidence 3556666788999999999 999999999998888667999999999987655311 15 8999999984
No 160
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.53 E-value=8.5e-08 Score=70.15 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=60.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-C------cchHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-K------DNYRNYRE 84 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-~------~~~~~~~~ 84 (139)
.+|+++|+|+++++.|++++...+ .+++++++|+.+. + . .. +||+|++..+ . ......++
T Consensus 55 ~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~-~------~~---~fD~v~~~~~~~~~~~~~~~~~~~l~ 121 (243)
T 3d2l_A 55 YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMREL-E-L------PE---PVDAITILCDSLNYLQTEADVKQTFD 121 (243)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGC-C-C------SS---CEEEEEECTTGGGGCCSHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhc-C-C------CC---CcCEEEEeCCchhhcCCHHHHHHHHH
Confidence 689999999999999999998877 4699999998764 1 1 35 8999998641 1 23456788
Q ss_pred HHhhcccCCeEEEEe
Q 044253 85 TLMTLFKVGGIVIYD 99 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~ 99 (139)
.+.++|+|||+++++
T Consensus 122 ~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 122 SAARLLTDGGKLLFD 136 (243)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHhcCCCeEEEEE
Confidence 888999999999984
No 161
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=98.52 E-value=1.2e-07 Score=75.62 Aligned_cols=82 Identities=15% Similarity=0.226 Sum_probs=62.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHc---CC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----c---
Q 044253 12 YFIVAIDVSRESSETGLPIIKKV---EV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----D--- 77 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~---g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----~--- 77 (139)
.+|+.||+|++.++.+++.+... .+ .++++++.+|+..++++.... .. +||+|++|..- .
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~---~~---~yDvIIvDl~D~~~s~~p~ 302 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE---GR---EFDYVINDLTAVPISTSPE 302 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH---TC---CEEEEEEECCSSCCCCC--
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc---cC---ceeEEEECCCCCcccCccc
Confidence 47999999999999999986421 11 246999999999999765432 35 79999999521 0
Q ss_pred ------chHHHHHHHhhcccCCeEEEEe
Q 044253 78 ------NYRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 78 ------~~~~~~~~~~~lL~~gG~ii~~ 99 (139)
....+++.+.+.|+|||+++..
T Consensus 303 g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 303 EDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp --CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 1245678888999999999864
No 162
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=98.51 E-value=5.9e-08 Score=78.11 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=52.9
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHc--CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKV--EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~--g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
+..+..+.+|++||+|+.+++.|++|++.+ |+ ++++++++|+.++++... .. +||+||+||+.
T Consensus 109 l~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~---~fDvV~lDPPr 173 (410)
T 3ll7_A 109 IALMSKASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TF---HPDYIYVDPAR 173 (410)
T ss_dssp HHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HH---CCSEEEECCEE
T ss_pred HHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CC---CceEEEECCCC
Confidence 455666789999999999999999999988 88 689999999998766532 25 89999999853
No 163
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.50 E-value=1e-07 Score=72.12 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=65.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~ 87 (139)
+.+|+++|+|+.+++.|++++...+. +++++++|+.+. + . .+ +||+|++... ..+...+++.+.
T Consensus 47 ~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~-~-~------~~---~fD~v~~~~~l~~~~~~~~~l~~~~ 113 (284)
T 3gu3_A 47 GSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-L------ND---KYDIAICHAFLLHMTTPETMLQKMI 113 (284)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-C------SS---CEEEEEEESCGGGCSSHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhc-C-c------CC---CeeEEEECChhhcCCCHHHHHHHHH
Confidence 47899999999999999999987775 799999999863 2 1 35 8999999763 234577899999
Q ss_pred hcccCCeEEEEeCCCC
Q 044253 88 TLFKVGGIVIYDNTLW 103 (139)
Q Consensus 88 ~lL~~gG~ii~~~~~~ 103 (139)
+.|+|||++++.+..|
T Consensus 114 ~~LkpgG~l~~~~~~~ 129 (284)
T 3gu3_A 114 HSVKKGGKIICFEPHW 129 (284)
T ss_dssp HTEEEEEEEEEEECCH
T ss_pred HHcCCCCEEEEEecch
Confidence 9999999999876553
No 164
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.50 E-value=1.9e-07 Score=66.76 Aligned_cols=81 Identities=6% Similarity=-0.106 Sum_probs=63.0
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----CcchH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNYR 80 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~~ 80 (139)
..+..+.+|+++|+|+++++.|+++. .+++++++|+.+. + .. .+ +||+|++... ..+..
T Consensus 58 ~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~ 121 (203)
T 3h2b_A 58 HLASLGHQIEGLEPATRLVELARQTH------PSVTFHHGTITDL-S-DS-----PK---RWAGLLAWYSLIHMGPGELP 121 (203)
T ss_dssp HHHHTTCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGG-G-GS-----CC---CEEEEEEESSSTTCCTTTHH
T ss_pred HHHhcCCeEEEEeCCHHHHHHHHHhC------CCCeEEeCccccc-c-cC-----CC---CeEEEEehhhHhcCCHHHHH
Confidence 34445679999999999999999872 3689999999874 2 21 36 8999999652 23567
Q ss_pred HHHHHHhhcccCCeEEEEeCCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
.+++.+.+.|+|||.+++....
T Consensus 122 ~~l~~~~~~L~pgG~l~i~~~~ 143 (203)
T 3h2b_A 122 DALVALRMAVEDGGGLLMSFFS 143 (203)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCcEEEEEEcc
Confidence 7899999999999999986543
No 165
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.50 E-value=1.1e-07 Score=70.22 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=64.1
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHH
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRN 81 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~ 81 (139)
...+..+.+|+++|+|+++++.|++++ . +...+++++++|+.+. + +. .+ +||+|++.... .+...
T Consensus 55 ~~l~~~~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~ 122 (263)
T 2yqz_A 55 LPLIARGYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAI-P-LP-----DE---SVHGVIVVHLWHLVPDWPK 122 (263)
T ss_dssp HHHHTTTCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSC-C-SC-----TT---CEEEEEEESCGGGCTTHHH
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccC-C-CC-----CC---CeeEEEECCchhhcCCHHH
Confidence 344445679999999999999999998 2 3336799999999753 2 21 35 89999987542 24577
Q ss_pred HHHHHhhcccCCeEEEEe
Q 044253 82 YRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~ 99 (139)
.++.+.+.|+|||++++.
T Consensus 123 ~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 123 VLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHCCCCcEEEEE
Confidence 889999999999999886
No 166
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.49 E-value=1.2e-07 Score=69.71 Aligned_cols=78 Identities=13% Similarity=0.005 Sum_probs=60.1
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-chHHHHHHHhhcc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-NYRNYRETLMTLF 90 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-~~~~~~~~~~~lL 90 (139)
.+|+++|+|+++++.|+++++.. ++++++++|+......... .. +||+|+.+.... ....+++.+.+.|
T Consensus 99 ~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~----~~---~~D~v~~~~~~~~~~~~~l~~~~~~L 168 (230)
T 1fbn_A 99 GIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANI----VE---KVDVIYEDVAQPNQAEILIKNAKWFL 168 (230)
T ss_dssp SEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTT----SC---CEEEEEECCCSTTHHHHHHHHHHHHE
T ss_pred cEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccccccc----Cc---cEEEEEEecCChhHHHHHHHHHHHhC
Confidence 68999999999999999997654 5799999998762110100 24 899999886432 2366788999999
Q ss_pred cCCeEEEEe
Q 044253 91 KVGGIVIYD 99 (139)
Q Consensus 91 ~~gG~ii~~ 99 (139)
+|||++++.
T Consensus 169 kpgG~l~i~ 177 (230)
T 1fbn_A 169 KKGGYGMIA 177 (230)
T ss_dssp EEEEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999985
No 167
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=98.49 E-value=6.5e-08 Score=71.65 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=64.8
Q ss_pred hhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCC----------------------------CCcE-EEEeCChHHHHHhh
Q 044253 5 LESTFFIY-FIVAIDVSRESSETGLPIIKKVEV----------------------------DLKI-NLMESRALPALDQL 54 (139)
Q Consensus 5 ~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~----------------------------~~~i-~~~~~da~~~l~~~ 54 (139)
+..+..+. +|+++|+|+.+++.|++++...+. ..++ +++++|+.+... .
T Consensus 72 ~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~-~ 150 (265)
T 2i62_A 72 LLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQP-L 150 (265)
T ss_dssp GTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSST-T
T ss_pred HHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCC-C
Confidence 33444454 899999999999999999865431 1137 999999876422 1
Q ss_pred HHhhhcccCCCceeEEEEcCCCc-------chHHHHHHHhhcccCCeEEEEeCCC
Q 044253 55 LKDEKIHFFFENFDYAFVDAHKD-------NYRNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 55 ~~~~~~~~~~~~fD~If~D~~~~-------~~~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
... ... +||+|++..... .+...+..+.++|+|||++++....
T Consensus 151 ~~~--~~~---~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 151 GGV--SLP---PADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp TTC--CCC---CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred Ccc--ccC---CccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 100 015 899999865322 4567788899999999999987643
No 168
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=98.48 E-value=1.3e-07 Score=67.71 Aligned_cols=81 Identities=10% Similarity=0.141 Sum_probs=63.8
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHH
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYR 83 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~ 83 (139)
..+.+|+++|+|+++++.|++++...+ .+++++++|+.+. + +. .+ +||+|++.... ......+
T Consensus 44 ~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~~~l 111 (209)
T 2p8j_A 44 EDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKL-P-FK-----DE---SMSFVYSYGTIFHMRKNDVKEAI 111 (209)
T ss_dssp HTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSC-C-SC-----TT---CEEEEEECSCGGGSCHHHHHHHH
T ss_pred hCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhC-C-CC-----CC---ceeEEEEcChHHhCCHHHHHHHH
Confidence 356799999999999999999998776 3689999998763 2 21 35 89999986432 2346678
Q ss_pred HHHhhcccCCeEEEEeCC
Q 044253 84 ETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~~ 101 (139)
+.+.+.|+|||++++...
T Consensus 112 ~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 112 DEIKRVLKPGGLACINFL 129 (209)
T ss_dssp HHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEEe
Confidence 888999999999998654
No 169
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.48 E-value=7.7e-08 Score=70.21 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=61.6
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHH
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRE 84 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~ 84 (139)
+..+.+|+++|+|+++++.|++++.. +++++++|+.+.. . .+ +||+|++.... .+....++
T Consensus 61 ~~~~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~---~-----~~---~fD~v~~~~~l~~~~~~~~~l~ 124 (250)
T 2p7i_A 61 QEHFNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ---L-----PR---RYDNIVLTHVLEHIDDPVALLK 124 (250)
T ss_dssp TTTCSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC---C-----SS---CEEEEEEESCGGGCSSHHHHHH
T ss_pred HHhCCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC---c-----CC---cccEEEEhhHHHhhcCHHHHHH
Confidence 33456899999999999999987643 6999999998751 1 46 89999986532 34577899
Q ss_pred HHh-hcccCCeEEEEeC
Q 044253 85 TLM-TLFKVGGIVIYDN 100 (139)
Q Consensus 85 ~~~-~lL~~gG~ii~~~ 100 (139)
.+. ++|+|||++++..
T Consensus 125 ~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 125 RINDDWLAEGGRLFLVC 141 (250)
T ss_dssp HHHHTTEEEEEEEEEEE
T ss_pred HHHHHhcCCCCEEEEEc
Confidence 999 9999999998864
No 170
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.48 E-value=7e-08 Score=70.52 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=62.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-----HHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-----RNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-----~~~~~~ 85 (139)
+.+++++|+|+.+++.|++++...+ +++++++|+.+.. . .+ +||+|++....... ..+++.
T Consensus 68 ~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~--~------~~---~fD~v~~~~~l~~~~~~~~~~~l~~ 133 (234)
T 3dtn_A 68 EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYD--F------EE---KYDMVVSALSIHHLEDEDKKELYKR 133 (234)
T ss_dssp TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCC--C------CS---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccC--C------CC---CceEEEEeCccccCCHHHHHHHHHH
Confidence 6799999999999999999886554 7999999997642 1 24 89999997643222 247888
Q ss_pred HhhcccCCeEEEEeCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~ 103 (139)
+.+.|+|||++++.+...
T Consensus 134 ~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 134 SYSILKESGIFINADLVH 151 (234)
T ss_dssp HHHHEEEEEEEEEEEECB
T ss_pred HHHhcCCCcEEEEEEecC
Confidence 999999999999866544
No 171
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.48 E-value=1.5e-07 Score=77.10 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=64.0
Q ss_pred hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cc
Q 044253 5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DN 78 (139)
Q Consensus 5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~ 78 (139)
+..+..+ .+|+++|+|+ +++.|+++++.+|+.++++++++|+.+. .+ .+ +||+|++++.. ..
T Consensus 174 ~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~--~~------~~---~fD~Ivs~~~~~~~~~e~ 241 (480)
T 3b3j_A 174 FFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV--SL------PE---QVDIIISEPMGYMLFNER 241 (480)
T ss_dssp HHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SS---CEEEEECCCCHHHHTCHH
T ss_pred HHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC--cc------CC---CeEEEEEeCchHhcCcHH
Confidence 3444443 5899999999 9999999999999988999999999764 12 35 89999998641 22
Q ss_pred hHHHHHHHhhcccCCeEEEE
Q 044253 79 YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~ 98 (139)
....+..+.++|+|||++++
T Consensus 242 ~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 242 MLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHHHHHGGGGEEEEEEEES
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 34456667789999999985
No 172
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.48 E-value=7.6e-08 Score=70.46 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=60.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCC----CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEV----DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~----~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
.+|+++|+++++++.|++++...+. .++++++++|+...++. .. +||+|+++...... .+.+.
T Consensus 115 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~---~fD~I~~~~~~~~~---~~~~~ 181 (227)
T 1r18_A 115 TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-------NA---PYNAIHVGAAAPDT---PTELI 181 (227)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-------GC---SEEEEEECSCBSSC---CHHHH
T ss_pred CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-------CC---CccEEEECCchHHH---HHHHH
Confidence 4899999999999999999988762 25799999999863221 25 89999999865433 36778
Q ss_pred hcccCCeEEEEeC
Q 044253 88 TLFKVGGIVIYDN 100 (139)
Q Consensus 88 ~lL~~gG~ii~~~ 100 (139)
++|+|||++++.-
T Consensus 182 ~~LkpgG~lvi~~ 194 (227)
T 1r18_A 182 NQLASGGRLIVPV 194 (227)
T ss_dssp HTEEEEEEEEEEE
T ss_pred HHhcCCCEEEEEE
Confidence 9999999999864
No 173
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=98.48 E-value=8.8e-08 Score=70.54 Aligned_cols=80 Identities=6% Similarity=0.041 Sum_probs=62.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~ 85 (139)
..+|+++|+|+.+++.|++++...+ ..+++++++|+.... .. .+ +||+|++..... .+..+++.
T Consensus 102 ~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~--~~-----~~---~fD~v~~~~~l~~~~~~~~~~~l~~ 170 (241)
T 2ex4_A 102 FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFT--PE-----PD---SYDVIWIQWVIGHLTDQHLAEFLRR 170 (241)
T ss_dssp CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCC--CC-----SS---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcC--CC-----CC---CEEEEEEcchhhhCCHHHHHHHHHH
Confidence 4589999999999999999988765 357999999987642 11 35 799999985422 13467888
Q ss_pred HhhcccCCeEEEEeCC
Q 044253 86 LMTLFKVGGIVIYDNT 101 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~ 101 (139)
+.++|+|||++++.+.
T Consensus 171 ~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 171 CKGSLRPNGIIVIKDN 186 (241)
T ss_dssp HHHHEEEEEEEEEEEE
T ss_pred HHHhcCCCeEEEEEEc
Confidence 9999999999988543
No 174
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.47 E-value=1.4e-07 Score=75.17 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=48.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
.+|+++|+|+.+++.|++|+..+|+.+++++.++|+.+... .. +||+|++||+..
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--------~~---~~D~Iv~NPPyg 312 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--------ED---EFGFIITNPPYG 312 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--------SC---BSCEEEECCCCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--------CC---CCcEEEECCCCc
Confidence 46999999999999999999999998789999999987521 35 899999999863
No 175
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.47 E-value=1.1e-07 Score=70.38 Aligned_cols=79 Identities=8% Similarity=0.046 Sum_probs=62.4
Q ss_pred hhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHH
Q 044253 7 STFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNY 82 (139)
Q Consensus 7 ~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~ 82 (139)
.+..+. +|+++|+|+++++.|++++. ..+++++++|+... + .. .+ +||+|++.... .+...+
T Consensus 62 l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~ 127 (253)
T 3g5l_A 62 AAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDI-A-IE-----PD---AYNVVLSSLALHYIASFDDI 127 (253)
T ss_dssp HHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGC-C-CC-----TT---CEEEEEEESCGGGCSCHHHH
T ss_pred HHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhC-C-CC-----CC---CeEEEEEchhhhhhhhHHHH
Confidence 344445 89999999999999998865 35799999999754 2 11 35 89999997632 356778
Q ss_pred HHHHhhcccCCeEEEEe
Q 044253 83 RETLMTLFKVGGIVIYD 99 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~ 99 (139)
++.+.++|+|||.+++.
T Consensus 128 l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 128 CKKVYINLKSSGSFIFS 144 (253)
T ss_dssp HHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEE
Confidence 99999999999999985
No 176
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.47 E-value=3.3e-07 Score=67.25 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=59.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-HHHHHHHhhcc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-RNYRETLMTLF 90 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-~~~~~~~~~lL 90 (139)
.+|+++|+|+++++.+.++.+.. .+++++++|+.+... +... .. +||+|++|...... ..++..+.+.|
T Consensus 103 ~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~-~~~~---~~---~~D~V~~~~~~~~~~~~~~~~~~~~L 172 (233)
T 2ipx_A 103 GLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHK-YRML---IA---MVDVIFADVAQPDQTRIVALNAHTFL 172 (233)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGG-GGGG---CC---CEEEEEECCCCTTHHHHHHHHHHHHE
T ss_pred cEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhh-hccc---CC---cEEEEEEcCCCccHHHHHHHHHHHHc
Confidence 68999999999988888888765 579999999986421 1100 35 89999999863332 34577788999
Q ss_pred cCCeEEEEe
Q 044253 91 KVGGIVIYD 99 (139)
Q Consensus 91 ~~gG~ii~~ 99 (139)
+|||++++.
T Consensus 173 kpgG~l~i~ 181 (233)
T 2ipx_A 173 RNGGHFVIS 181 (233)
T ss_dssp EEEEEEEEE
T ss_pred CCCeEEEEE
Confidence 999999984
No 177
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.46 E-value=6.5e-07 Score=67.98 Aligned_cols=87 Identities=10% Similarity=0.001 Sum_probs=58.0
Q ss_pred chhhhhhhc-ceeEEeC-CccHHHHHHHHH-----HHcCCC----CcEEEEeCCh----HHHHHhhHHhhhcccCCCcee
Q 044253 4 NLESTFFIY-FIVAIDV-SRESSETGLPII-----KKVEVD----LKINLMESRA----LPALDQLLKDEKIHFFFENFD 68 (139)
Q Consensus 4 ~~~~~~~~~-~v~~vD~-s~~~~~~Ar~n~-----~~~g~~----~~i~~~~~da----~~~l~~~~~~~~~~~~~~~fD 68 (139)
++..+..+. +|+++|+ |+++++.|++|+ +.+++. ++++++..+. ......+. .. +||
T Consensus 94 ~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~---~fD 165 (281)
T 3bzb_A 94 SIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTG-----LQ---RFQ 165 (281)
T ss_dssp HHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHS-----CS---SBS
T ss_pred HHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhcc-----CC---CCC
Confidence 344555555 8999999 899999999999 555654 4788885443 22222111 35 899
Q ss_pred EEEE-cCCC--cchHHHHHHHhhccc---C--CeEEEE
Q 044253 69 YAFV-DAHK--DNYRNYRETLMTLFK---V--GGIVIY 98 (139)
Q Consensus 69 ~If~-D~~~--~~~~~~~~~~~~lL~---~--gG~ii~ 98 (139)
+|++ |... .....+++.+.++|+ | ||.+++
T Consensus 166 ~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 166 VVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp EEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred EEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 9997 6533 346778899999999 9 997654
No 178
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.46 E-value=4.4e-07 Score=68.42 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=64.8
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCC---CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-C---Ccc
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVD---LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-H---KDN 78 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~---~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~---~~~ 78 (139)
..+..+.+|+++|+|+++++.|+++....+.. .++.+..+|+......+.. .+ +||+|++.+ . ...
T Consensus 74 ~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~---~fD~V~~~g~~l~~~~~ 146 (293)
T 3thr_A 74 MLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA----GD---GFDAVICLGNSFAHLPD 146 (293)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC----TT---CEEEEEECTTCGGGSCC
T ss_pred HHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccccc----CC---CeEEEEEcChHHhhcCc
Confidence 34445679999999999999999987554432 4688999999876322210 35 899999962 1 122
Q ss_pred -------hHHHHHHHhhcccCCeEEEEe
Q 044253 79 -------YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 -------~~~~~~~~~~lL~~gG~ii~~ 99 (139)
...+++.+.++|+|||++++.
T Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (293)
T 3thr_A 147 SKGDQSEHRLALKNIASMVRPGGLLVID 174 (293)
T ss_dssp SSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 567889999999999999975
No 179
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.46 E-value=2.8e-07 Score=71.91 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=61.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------hHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------YRNYR 83 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------~~~~~ 83 (139)
.+|+++|+|+.+++.|++++..+++. ++++.+|+.+.. .+ +||+|+++++... ...++
T Consensus 221 ~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~---------~~---~fD~Iv~~~~~~~g~~~~~~~~~~~l 286 (343)
T 2pjd_A 221 IRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV---------KG---RFDMIISNPPFHDGMQTSLDAAQTLI 286 (343)
T ss_dssp CBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC---------CS---CEEEEEECCCCCSSSHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc---------cC---CeeEEEECCCcccCccCCHHHHHHHH
Confidence 58999999999999999999998874 677899987542 35 8999999876432 35678
Q ss_pred HHHhhcccCCeEEEEe
Q 044253 84 ETLMTLFKVGGIVIYD 99 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~ 99 (139)
+.+.+.|+|||.+++-
T Consensus 287 ~~~~~~LkpgG~l~i~ 302 (343)
T 2pjd_A 287 RGAVRHLNSGGELRIV 302 (343)
T ss_dssp HHHGGGEEEEEEEEEE
T ss_pred HHHHHhCCCCcEEEEE
Confidence 8888999999999874
No 180
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.46 E-value=5.5e-07 Score=72.95 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=63.7
Q ss_pred cceeEEeCCccHHHHH-------HHHHHHcCCC-CcEEEEeCChHHH---HHhhHHhhhcccCCCceeEEEEcCC--Ccc
Q 044253 12 YFIVAIDVSRESSETG-------LPIIKKVEVD-LKINLMESRALPA---LDQLLKDEKIHFFFENFDYAFVDAH--KDN 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~A-------r~n~~~~g~~-~~i~~~~~da~~~---l~~~~~~~~~~~~~~~fD~If~D~~--~~~ 78 (139)
.+|++||+++++++.| +++++..|+. ++++++++|.... +... .. +||+|++... ...
T Consensus 267 ~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~------~~---~FDvIvvn~~l~~~d 337 (433)
T 1u2z_A 267 ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL------IP---QCDVILVNNFLFDED 337 (433)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH------GG---GCSEEEECCTTCCHH
T ss_pred CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc------cC---CCCEEEEeCcccccc
Confidence 4799999999999999 9999999953 6899999865421 2211 25 8999998632 234
Q ss_pred hHHHHHHHhhcccCCeEEEEeCCCCC
Q 044253 79 YRNYRETLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~~~~~~ 104 (139)
....+..+.+.|+|||.+++.+.+..
T Consensus 338 ~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 338 LNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp HHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred HHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 55677889999999999999765443
No 181
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.45 E-value=1.8e-07 Score=68.37 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=62.9
Q ss_pred CCchhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253 2 PFNLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY 79 (139)
Q Consensus 2 ~~~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~ 79 (139)
|+|++++.. .++++++|+|+.|++.+++|+..+|...++++ +|...... .+ +||+|++--.....
T Consensus 62 plAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~--------~~---~~DvVLa~k~LHlL 128 (200)
T 3fzg_A 62 PLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY--------KG---TYDVVFLLKMLPVL 128 (200)
T ss_dssp HHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT--------TS---EEEEEEEETCHHHH
T ss_pred HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC--------CC---CcChhhHhhHHHhh
Confidence 567777444 66999999999999999999999999767777 56654321 36 89999975322111
Q ss_pred ---HHHHHHHhhcccCCeEEEEeC
Q 044253 80 ---RNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 80 ---~~~~~~~~~lL~~gG~ii~~~ 100 (139)
...+..+.+.|++||++|.-.
T Consensus 129 ~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 129 KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 112336789999999999765
No 182
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.43 E-value=6.3e-08 Score=71.65 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=63.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~~~ 85 (139)
+.+|+++|+|+++++.|++++... ++++++++|+.+. + .. .+ +||+|++.... .+...+++.
T Consensus 78 ~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~~~l~~ 144 (266)
T 3ujc_A 78 GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK-E-FP-----EN---NFDLIYSRDAILALSLENKNKLFQK 144 (266)
T ss_dssp CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC-C-CC-----TT---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC-C-CC-----CC---cEEEEeHHHHHHhcChHHHHHHHHH
Confidence 679999999999999999887554 5899999999764 2 21 35 89999997532 345667888
Q ss_pred HhhcccCCeEEEEeCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~ 103 (139)
+.++|+|||.+++.+...
T Consensus 145 ~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 145 CYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp HHHHEEEEEEEEEEEEEE
T ss_pred HHHHcCCCCEEEEEEecc
Confidence 999999999999876533
No 183
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.43 E-value=5.4e-07 Score=72.83 Aligned_cols=84 Identities=11% Similarity=0.058 Sum_probs=62.2
Q ss_pred ceeEEeCCccHHHHHHHHH-------HHcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cchHHH
Q 044253 13 FIVAIDVSRESSETGLPII-------KKVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNYRNY 82 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~-------~~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~~~~ 82 (139)
+|++||+++++++.|+++. +.+|+ .+++++++||+.+. +. ... -. .||+||+.... ......
T Consensus 199 kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l-p~-~d~---~~---~aDVVf~Nn~~F~pdl~~a 270 (438)
T 3uwp_A 199 HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE-EW-RER---IA---NTSVIFVNNFAFGPEVDHQ 270 (438)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH-HH-HHH---HH---TCSEEEECCTTCCHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC-cc-ccc---cC---CccEEEEcccccCchHHHH
Confidence 5999999999999999875 34566 36899999999875 21 100 14 79999997642 233455
Q ss_pred HHHHhhcccCCeEEEEeCCCCC
Q 044253 83 RETLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~~~~ 104 (139)
+..+.+.|+|||.|++.+....
T Consensus 271 L~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 271 LKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp HHHHHTTSCTTCEEEESSCSSC
T ss_pred HHHHHHcCCCCcEEEEeecccC
Confidence 6777899999999998755543
No 184
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=98.42 E-value=1.9e-06 Score=68.22 Aligned_cols=84 Identities=14% Similarity=0.049 Sum_probs=65.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCC-----CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVD-----LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------- 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~-----~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------- 78 (139)
...|+++|+|+..+...++|++..+.. .++.+...|+..+-... .+ .||.|++|++...
T Consensus 172 ~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~------~~---~fD~VLlDaPCSg~g~g~~r 242 (359)
T 4fzv_A 172 CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE------GD---TYDRVLVDVPCTTDRHSLHE 242 (359)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS------TT---CEEEEEEECCCCCHHHHTTC
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc------cc---cCCEEEECCccCCCCCcccc
Confidence 457999999999999999999988753 47999999998764322 35 8999999986432
Q ss_pred --------------------hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 79 --------------------YRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 79 --------------------~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
-..+++.+.++|+|||+||+.....
T Consensus 243 ~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 243 EENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp CTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred cChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 0235666778999999999865554
No 185
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=98.41 E-value=2.7e-07 Score=72.96 Aligned_cols=85 Identities=7% Similarity=0.067 Sum_probs=66.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc-----C-C-CCcEEEEeCChHHHHH----hhHHhhhcccCCCceeEEEEcCCC---
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV-----E-V-DLKINLMESRALPALD----QLLKDEKIHFFFENFDYAFVDAHK--- 76 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~-----g-~-~~~i~~~~~da~~~l~----~~~~~~~~~~~~~~fD~If~D~~~--- 76 (139)
..+|+++|+|+++++.|+++++.. | + ..+++++++|+.+... .+. .+ +||+|++....
T Consensus 108 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~-----~~---~fD~V~~~~~l~~~ 179 (383)
T 4fsd_A 108 HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP-----DS---SVDIVISNCVCNLS 179 (383)
T ss_dssp TCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC-----TT---CEEEEEEESCGGGC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC-----CC---CEEEEEEccchhcC
Confidence 458999999999999999998765 4 3 2589999999986421 111 35 89999997632
Q ss_pred cchHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 77 DNYRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 77 ~~~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
.+...+++.+.++|+|||++++.+...
T Consensus 180 ~d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 180 TNKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 346778999999999999999876544
No 186
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=98.41 E-value=8.2e-07 Score=68.39 Aligned_cols=82 Identities=17% Similarity=0.256 Sum_probs=58.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCC-----cEEEEeCCh----H-HHHHh-hHHhhhcccCCCceeEEEEcCCC---
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDL-----KINLMESRA----L-PALDQ-LLKDEKIHFFFENFDYAFVDAHK--- 76 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-----~i~~~~~da----~-~~l~~-~~~~~~~~~~~~~fD~If~D~~~--- 76 (139)
+.+|+++|+|+++++.|++.....+... .++++++|+ . ..+.. .. .+ +||+|++-...
T Consensus 71 ~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~-----~~---~FD~V~~~~~lhy~ 142 (302)
T 2vdw_A 71 IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY-----FG---KFNIIDWQFAIHYS 142 (302)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC-----SS---CEEEEEEESCGGGT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc-----CC---CeeEEEECchHHHh
Confidence 4689999999999999999887766421 267777776 2 11221 11 35 89999874321
Q ss_pred ---cchHHHHHHHhhcccCCeEEEEeC
Q 044253 77 ---DNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 77 ---~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+....+..+.++|+|||++++..
T Consensus 143 ~~~~~~~~~l~~~~r~LkpGG~~i~~~ 169 (302)
T 2vdw_A 143 FHPRHYATVMNNLSELTASGGKVLITT 169 (302)
T ss_dssp CSTTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 234678899999999999998754
No 187
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.40 E-value=3.2e-08 Score=75.05 Aligned_cols=73 Identities=10% Similarity=0.066 Sum_probs=59.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHc--CC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKV--EV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~--g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+|++||+|+++++.|++++... ++ .++++++.+|+.+++ + +||+|++|... ...+++.+.+
T Consensus 95 ~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------~---~fD~Ii~d~~d--p~~~~~~~~~ 159 (262)
T 2cmg_A 95 THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------K---KYDLIFCLQEP--DIHRIDGLKR 159 (262)
T ss_dssp CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------C---CEEEEEESSCC--CHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------h---hCCEEEECCCC--hHHHHHHHHH
Confidence 68999999999999999887431 22 358999999998753 2 79999999743 3458899999
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
.|+|||++++.
T Consensus 160 ~L~pgG~lv~~ 170 (262)
T 2cmg_A 160 MLKEDGVFISV 170 (262)
T ss_dssp TEEEEEEEEEE
T ss_pred hcCCCcEEEEE
Confidence 99999999985
No 188
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=98.39 E-value=3.8e-07 Score=65.64 Aligned_cols=83 Identities=10% Similarity=0.039 Sum_probs=62.2
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRNYR 83 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~~~ 83 (139)
..+..+.+|+++|+|+.+++.|+++ .+++++.+|+......... ... +||+|++... ..+...++
T Consensus 69 ~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~---~~~---~fD~v~~~~~l~~~~~~~~l 135 (227)
T 3e8s_A 69 ALADRGIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVP---VGK---DYDLICANFALLHQDIIELL 135 (227)
T ss_dssp HHHTTTCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSC---CCC---CEEEEEEESCCCSSCCHHHH
T ss_pred HHHHCCCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccc---cCC---CccEEEECchhhhhhHHHHH
Confidence 3344477899999999999999987 3578899998876321110 023 6999998653 34567889
Q ss_pred HHHhhcccCCeEEEEeCC
Q 044253 84 ETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~~ 101 (139)
+.+.++|+|||++++...
T Consensus 136 ~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 136 SAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp HHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHhCCCeEEEEEec
Confidence 999999999999998654
No 189
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=98.39 E-value=5.7e-07 Score=62.48 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=61.1
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHH
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRN 81 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~ 81 (139)
...+....+++++|+|+++++.|+++ .++++++++| ++ .. .+ +||+|++.... .+...
T Consensus 33 ~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d----~~-~~-----~~---~~D~v~~~~~l~~~~~~~~ 93 (170)
T 3i9f_A 33 KYLLEFATKLYCIDINVIALKEVKEK------FDSVITLSDP----KE-IP-----DN---SVDFILFANSFHDMDDKQH 93 (170)
T ss_dssp HHHHTTEEEEEEECSCHHHHHHHHHH------CTTSEEESSG----GG-SC-----TT---CEEEEEEESCSTTCSCHHH
T ss_pred HHHHhhcCeEEEEeCCHHHHHHHHHh------CCCcEEEeCC----CC-CC-----CC---ceEEEEEccchhcccCHHH
Confidence 33444445899999999999999988 2579999998 22 11 35 89999987532 34577
Q ss_pred HHHHHhhcccCCeEEEEeCCCC
Q 044253 82 YRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
+++.+.+.|+|||.+++.+...
T Consensus 94 ~l~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 94 VISEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp HHHHHHHHEEEEEEEEEEEECS
T ss_pred HHHHHHHhcCCCCEEEEEEcCc
Confidence 8899999999999999875443
No 190
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.38 E-value=8e-08 Score=69.48 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=62.3
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---hH--H
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---YR--N 81 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---~~--~ 81 (139)
.+..+.+++++|+|+++++.|++++. .+++++++|+.+. + . .+ +||+|++...... .. .
T Consensus 63 l~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~-~-~------~~---~fD~v~~~~~l~~~~~~~~~~ 126 (220)
T 3hnr_A 63 LLLAGRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSF-E-V------PT---SIDTIVSTYAFHHLTDDEKNV 126 (220)
T ss_dssp HHHTTCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSC-C-C------CS---CCSEEEEESCGGGSCHHHHHH
T ss_pred HHhCCCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhc-C-C------CC---CeEEEEECcchhcCChHHHHH
Confidence 34457799999999999999998864 4789999999764 1 1 24 8999999764322 22 2
Q ss_pred HHHHHhhcccCCeEEEEeCCCC
Q 044253 82 YRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
+++.+.+.|+|||.+++.+..+
T Consensus 127 ~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 127 AIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp HHHHHHHHSCTTCEEEEEEECB
T ss_pred HHHHHHHhcCCCCEEEEEeccc
Confidence 7888999999999999875444
No 191
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.38 E-value=3.2e-07 Score=71.52 Aligned_cols=75 Identities=21% Similarity=0.176 Sum_probs=60.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch------------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY------------ 79 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~------------ 79 (139)
.+++++|+|+.+++.|+.|+...|+ +++++++|++... . .. +||+|+++++...+
T Consensus 160 ~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~--~------~~---~fD~Ii~NPPfg~~~~~~~~~~~~~~ 226 (344)
T 2f8l_A 160 VHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL--L------VD---PVDVVISDLPVGYYPDDENAKTFELC 226 (344)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC--C------CC---CEEEEEEECCCSEESCHHHHTTSTTC
T ss_pred ceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc--c------cC---CccEEEECCCCCCcCchhhhhhcccc
Confidence 6899999999999999999998887 5899999987532 1 35 89999999873211
Q ss_pred ---------HHHHHHHhhcccCCeEEEEe
Q 044253 80 ---------RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 80 ---------~~~~~~~~~lL~~gG~ii~~ 99 (139)
..+++.+.+.|++||++++-
T Consensus 227 ~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v 255 (344)
T 2f8l_A 227 REEGHSFAHFLFIEQGMRYTKPGGYLFFL 255 (344)
T ss_dssp CSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence 24788888999999998653
No 192
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.38 E-value=3.5e-07 Score=65.66 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=61.8
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRN 81 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~ 81 (139)
.+..+.+|+++|+|+.+++.|++ .+. .+++++++|+.+. .. .+ +||+|++...... ...
T Consensus 64 l~~~~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~---~~-----~~---~~D~v~~~~~l~~~~~~~~~~ 127 (218)
T 3ou2_A 64 LSGLADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW---TP-----DR---QWDAVFFAHWLAHVPDDRFEA 127 (218)
T ss_dssp HHHHSSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC---CC-----SS---CEEEEEEESCGGGSCHHHHHH
T ss_pred HHhcCCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC---CC-----CC---ceeEEEEechhhcCCHHHHHH
Confidence 34447799999999999999998 454 5799999999775 11 46 8999999763222 356
Q ss_pred HHHHHhhcccCCeEEEEeCC
Q 044253 82 YRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~~ 101 (139)
+++.+.+.|+|||.+++...
T Consensus 128 ~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 128 FWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp HHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEEeC
Confidence 78889999999999988654
No 193
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=98.37 E-value=8.6e-07 Score=67.26 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=52.4
Q ss_pred HcCC-CCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHHHHHHHhhcccCCeEEEEeCCC
Q 044253 33 KVEV-DLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 33 ~~g~-~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
..|. .++++++.|++.+.++.+..+.. .. +||+|++|++. ..+..+++.+.++|++||+|++||..
T Consensus 152 ~~g~~~~~i~li~G~~~dTL~~~l~~~~-~~---~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 152 FFGHVTQRSVLVEGDVRETVPRYLAENP-QT---VIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp TTTTSCCSEEEEESCHHHHHHHHHHHCT-TC---CEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hcCCCCCcEEEEEecHHHHHHHHHHhCC-CC---ceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4565 48999999999999987643211 24 69999999985 34556799999999999999999974
No 194
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=98.37 E-value=1.4e-07 Score=71.62 Aligned_cols=64 Identities=8% Similarity=0.015 Sum_probs=51.4
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcC--------CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVE--------VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g--------~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
++..+..+++|++||+++.++..++++++... +.++++++++|+.++++.+ .+ +||+||+||.
T Consensus 103 al~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~------~~---~fDvV~lDP~ 173 (258)
T 2oyr_A 103 AFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------TP---RPQVVYLDPM 173 (258)
T ss_dssp HHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC------SS---CCSEEEECCC
T ss_pred HHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC------cc---cCCEEEEcCC
Confidence 45566668899999999999999988876542 3357999999999987654 35 7999999985
Q ss_pred C
Q 044253 76 K 76 (139)
Q Consensus 76 ~ 76 (139)
.
T Consensus 174 y 174 (258)
T 2oyr_A 174 F 174 (258)
T ss_dssp C
T ss_pred C
Confidence 4
No 195
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.36 E-value=4.4e-07 Score=66.99 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=59.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
+.+|+++|+|+++++.|+++ ..+++++++|+.+.. . .. +||+|++.... .+....+..+.
T Consensus 57 ~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~------~~---~fD~v~~~~~l~~~~~~~~~l~~~~ 119 (259)
T 2p35_A 57 VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--P------AQ---KADLLYANAVFQWVPDHLAVLSQLM 119 (259)
T ss_dssp TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--C------SS---CEEEEEEESCGGGSTTHHHHHHHHG
T ss_pred CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--c------cC---CcCEEEEeCchhhCCCHHHHHHHHH
Confidence 67999999999999999987 247899999987642 1 46 89999997642 34577889999
Q ss_pred hcccCCeEEEEeC
Q 044253 88 TLFKVGGIVIYDN 100 (139)
Q Consensus 88 ~lL~~gG~ii~~~ 100 (139)
+.|+|||++++..
T Consensus 120 ~~L~pgG~l~~~~ 132 (259)
T 2p35_A 120 DQLESGGVLAVQM 132 (259)
T ss_dssp GGEEEEEEEEEEE
T ss_pred HhcCCCeEEEEEe
Confidence 9999999998853
No 196
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.36 E-value=7.1e-07 Score=65.17 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=56.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-HHHHHHHhhcc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-RNYRETLMTLF 90 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-~~~~~~~~~lL 90 (139)
.+|+++|+|+++++.+.+..+.. .++.++++|+......... .+ +||+|+++...... ..+++.+.+.|
T Consensus 82 ~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~----~~---~fD~V~~~~~~~~~~~~~l~~~~r~L 151 (210)
T 1nt2_A 82 GIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGI----VE---KVDLIYQDIAQKNQIEILKANAEFFL 151 (210)
T ss_dssp SEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTT----CC---CEEEEEECCCSTTHHHHHHHHHHHHE
T ss_pred CEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhccc----cc---ceeEEEEeccChhHHHHHHHHHHHHh
Confidence 68999999999988777766543 3689999998753110000 24 89999999644332 23478889999
Q ss_pred cCCeEEEEe
Q 044253 91 KVGGIVIYD 99 (139)
Q Consensus 91 ~~gG~ii~~ 99 (139)
+|||.+++.
T Consensus 152 kpgG~l~i~ 160 (210)
T 1nt2_A 152 KEKGEVVIM 160 (210)
T ss_dssp EEEEEEEEE
T ss_pred CCCCEEEEE
Confidence 999999986
No 197
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.35 E-value=1.2e-07 Score=70.53 Aligned_cols=77 Identities=9% Similarity=-0.041 Sum_probs=59.9
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC-CCc------ch
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA-HKD------NY 79 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~-~~~------~~ 79 (139)
.+..+.+|+++|+|+++++.|++++. +++++++|+.+. + . .+ +||+|++.. ... ..
T Consensus 68 l~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~-~-~------~~---~fD~v~~~~~~l~~~~~~~~~ 130 (263)
T 3pfg_A 68 LADSFGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDF-S-L------GR---RFSAVTCMFSSIGHLAGQAEL 130 (263)
T ss_dssp HTTTSSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTC-C-C------SC---CEEEEEECTTGGGGSCHHHHH
T ss_pred HHHcCCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHC-C-c------cC---CcCEEEEcCchhhhcCCHHHH
Confidence 34446689999999999999998753 689999999774 1 1 25 899999975 221 33
Q ss_pred HHHHHHHhhcccCCeEEEEeC
Q 044253 80 RNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~~ 100 (139)
..+++.+.++|+|||+++++.
T Consensus 131 ~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 131 DAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCcEEEEEe
Confidence 456888889999999999974
No 198
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.34 E-value=1.4e-07 Score=71.32 Aligned_cols=77 Identities=14% Similarity=0.118 Sum_probs=59.1
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHHH
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRNY 82 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~~ 82 (139)
...+..+.+|++||+|++|++.|++ ..+++++++|+.+. + +. ++ +||+|++-.. ..+....
T Consensus 55 ~~l~~~~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~-~-~~-----~~---sfD~v~~~~~~h~~~~~~~ 117 (257)
T 4hg2_A 55 LGLAEFFERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDT-G-LP-----PA---SVDVAIAAQAMHWFDLDRF 117 (257)
T ss_dssp HHHHTTCSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCC-C-CC-----SS---CEEEEEECSCCTTCCHHHH
T ss_pred HHHHHhCCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhh-c-cc-----CC---cccEEEEeeehhHhhHHHH
Confidence 3445567799999999999988764 24799999998764 2 21 46 8999998653 2245678
Q ss_pred HHHHhhcccCCeEEEE
Q 044253 83 RETLMTLFKVGGIVIY 98 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~ 98 (139)
+..+.++|+|||++++
T Consensus 118 ~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 118 WAELRRVARPGAVFAA 133 (257)
T ss_dssp HHHHHHHEEEEEEEEE
T ss_pred HHHHHHHcCCCCEEEE
Confidence 8999999999999976
No 199
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.34 E-value=8.6e-07 Score=63.56 Aligned_cols=77 Identities=6% Similarity=0.072 Sum_probs=59.2
Q ss_pred hhhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----c
Q 044253 5 LESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----N 78 (139)
Q Consensus 5 ~~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~ 78 (139)
+..+..+ .+|+++|+|+.+++.|++|+...++ +++++++|+.+. .. +||+|++|++.. .
T Consensus 65 ~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~----------~~---~~D~v~~~~p~~~~~~~~ 129 (207)
T 1wy7_A 65 YGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF----------NS---RVDIVIMNPPFGSQRKHA 129 (207)
T ss_dssp HHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC----------CC---CCSEEEECCCCSSSSTTT
T ss_pred HHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc----------CC---CCCEEEEcCCCccccCCc
Confidence 3444443 3699999999999999999998887 699999999763 25 899999998632 2
Q ss_pred hHHHHHHHhhcccCCeEEEE
Q 044253 79 YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~ 98 (139)
...+++.+.+.+ |+++++
T Consensus 130 ~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 130 DRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp THHHHHHHHHHC--SEEEEE
T ss_pred hHHHHHHHHHhc--CcEEEE
Confidence 346777777777 665554
No 200
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=98.34 E-value=2.7e-07 Score=66.43 Aligned_cols=77 Identities=12% Similarity=-0.040 Sum_probs=60.3
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYR 80 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~ 80 (139)
..+..+.+|+++|+|+++++.|++++ +++++++|+.... . .+ +||+|++..... ...
T Consensus 60 ~l~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--~------~~---~fD~v~~~~~l~~~~~~~~~ 121 (211)
T 3e23_A 60 AMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--A------ID---AYDAVWAHACLLHVPRDELA 121 (211)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--C------CS---CEEEEEECSCGGGSCHHHHH
T ss_pred HHHHcCCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--C------CC---cEEEEEecCchhhcCHHHHH
Confidence 34445679999999999999999987 3677888887642 1 46 899999976322 445
Q ss_pred HHHHHHhhcccCCeEEEEeC
Q 044253 81 NYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+++.+.+.|+|||++++..
T Consensus 122 ~~l~~~~~~LkpgG~l~~~~ 141 (211)
T 3e23_A 122 DVLKLIWRALKPGGLFYASY 141 (211)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEE
Confidence 68889999999999999863
No 201
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.33 E-value=1.3e-06 Score=67.63 Aligned_cols=83 Identities=13% Similarity=0.080 Sum_probs=60.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-----------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY----------- 79 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~----------- 79 (139)
..+|+++|+++++++.+++|++.+|+ .+++++++|+.+....... .. +||.|++|++....
T Consensus 127 ~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~----~~---~fD~Vl~D~PcSg~G~~~r~pd~~~ 198 (309)
T 2b9e_A 127 QGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPR----YH---EVHYILLDPSCSGSGMPSRQLEEPG 198 (309)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGG----GT---TEEEEEECCCCCC------------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCccccc----cC---CCCEEEEcCCcCCCCCCccCCChhh
Confidence 36899999999999999999999998 4799999999875321100 14 79999999764210
Q ss_pred ----------------HHHHHHHhhcccCCeEEEEeCCC
Q 044253 80 ----------------RNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 80 ----------------~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
..+++.+.++++ ||++++....
T Consensus 199 ~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 199 AGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 123555556776 9998875443
No 202
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.33 E-value=2.2e-07 Score=66.47 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=58.5
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----------------
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---------------- 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---------------- 76 (139)
+|+++|+|+.+++.|++++.. ..+++++++|+.+. + +. .+ +||+|++....
T Consensus 67 ~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~~~~~~~~~~~~~~~~~~ 133 (215)
T 2pxx_A 67 NVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-D-FP-----SA---SFDVVLEKGTLDALLAGERDPWTVSSE 133 (215)
T ss_dssp CEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-C-SC-----SS---CEEEEEEESHHHHHTTTCSCTTSCCHH
T ss_pred cEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-C-CC-----CC---cccEEEECcchhhhccccccccccccc
Confidence 899999999999999998764 24799999998764 1 21 35 89999986421
Q ss_pred --cchHHHHHHHhhcccCCeEEEEeC
Q 044253 77 --DNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 77 --~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
.....+++.+.++|+|||.+++..
T Consensus 134 ~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 134 GVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 123567888889999999998754
No 203
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.33 E-value=7.1e-07 Score=66.62 Aligned_cols=84 Identities=8% Similarity=0.003 Sum_probs=61.4
Q ss_pred cceeEEeCCcc------HHHHHHHHHHHcCCCCcEEEEeCC-hHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHH
Q 044253 12 YFIVAIDVSRE------SSETGLPIIKKVEVDLKINLMESR-ALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRN 81 (139)
Q Consensus 12 ~~v~~vD~s~~------~~~~Ar~n~~~~g~~~~i~~~~~d-a~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~ 81 (139)
.+|+++|+|++ +++.|++++...++.++++++++| .......+. .+ +||+|++.... .....
T Consensus 69 ~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----~~---~fD~v~~~~~l~~~~~~~~ 140 (275)
T 3bkx_A 69 GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA-----DQ---HFDRVVLAHSLWYFASANA 140 (275)
T ss_dssp CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT-----TC---CCSEEEEESCGGGSSCHHH
T ss_pred CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC-----CC---CEEEEEEccchhhCCCHHH
Confidence 78999999997 999999999998887789999998 322100111 35 89999987642 23344
Q ss_pred HHHHHhhcccCCeEEEEeCCCC
Q 044253 82 YRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
+++.+..++++||++++.+...
T Consensus 141 ~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 141 LALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp HHHHHHHHTTTCSEEEEEEECS
T ss_pred HHHHHHHHhCCCCEEEEEEecC
Confidence 5666666777799999865544
No 204
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.32 E-value=5e-07 Score=66.51 Aligned_cols=77 Identities=6% Similarity=0.064 Sum_probs=60.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRETL 86 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~~ 86 (139)
.+|+++|+|+.+++.|++++... .+++++++|+... + +. .+ +||+|++..... ....+++.+
T Consensus 117 ~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~~~l~~~ 183 (254)
T 1xtp_A 117 ATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-T-LP-----PN---TYDLIVIQWTAIYLTDADFVKFFKHC 183 (254)
T ss_dssp SEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-C-CC-----SS---CEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC-C-CC-----CC---CeEEEEEcchhhhCCHHHHHHHHHHH
Confidence 46999999999999999987654 5799999998764 2 21 35 899999875422 345678888
Q ss_pred hhcccCCeEEEEeCC
Q 044253 87 MTLFKVGGIVIYDNT 101 (139)
Q Consensus 87 ~~lL~~gG~ii~~~~ 101 (139)
.+.|+|||++++...
T Consensus 184 ~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 184 QQALTPNGYIFFKEN 198 (254)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHhcCCCeEEEEEec
Confidence 999999999988653
No 205
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=98.31 E-value=3.1e-07 Score=68.89 Aligned_cols=85 Identities=20% Similarity=0.128 Sum_probs=58.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCC----------------------------CCcEE-EEeCChHHHHHhhHHhhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEV----------------------------DLKIN-LMESRALPALDQLLKDEKIHF 62 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~----------------------------~~~i~-~~~~da~~~l~~~~~~~~~~~ 62 (139)
.+|+++|+|+.+++.|+++++.... ..+++ ++++|+.+..+ +... ...
T Consensus 79 ~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~-~~~~--~~~ 155 (263)
T 2a14_A 79 QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNP-LAPA--VLP 155 (263)
T ss_dssp EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSST-TTTC--CCC
T ss_pred cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCC-CCcc--ccC
Confidence 4799999999999999998865421 01244 88888876321 1000 024
Q ss_pred CCCceeEEEEcCC-------CcchHHHHHHHhhcccCCeEEEEeCCC
Q 044253 63 FFENFDYAFVDAH-------KDNYRNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 63 ~~~~fD~If~D~~-------~~~~~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
+||+|++-.. ..++...+..+.++|||||++++....
T Consensus 156 ---~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 156 ---LADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp ---CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred ---CCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 8999998632 134456788888999999999987543
No 206
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=98.31 E-value=9.3e-07 Score=67.93 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=64.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~~~~~~ 85 (139)
..+++++|++ .+++.|++++...++.++++++.+|+.+. .+ .. .||+|++.... .....+++.
T Consensus 189 ~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------~~---~~D~v~~~~~l~~~~~~~~~~~l~~ 256 (335)
T 2r3s_A 189 NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY------GN---DYDLVLLPNFLHHFDVATCEQLLRK 256 (335)
T ss_dssp TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC------CS---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC------CC---CCcEEEEcchhccCCHHHHHHHHHH
Confidence 5689999999 99999999999999878899999998763 22 24 69999985432 223567888
Q ss_pred HhhcccCCeEEEEeCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~ 103 (139)
+.+.|+|||.+++.+...
T Consensus 257 ~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 257 IKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp HHHHEEEEEEEEEEECCC
T ss_pred HHHhCCCCcEEEEEeecC
Confidence 899999999887765544
No 207
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=98.31 E-value=6.4e-07 Score=70.32 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=65.8
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRE 84 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~ 84 (139)
...+++++|+ +++++.|++++...++.++++++.+|+.+.-..+ .+ +||+|++-.... ....+++
T Consensus 202 p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------p~---~~D~v~~~~vlh~~~~~~~~~~l~ 271 (363)
T 3dp7_A 202 KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF------PT---GFDAVWMSQFLDCFSEEEVISILT 271 (363)
T ss_dssp TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC------CC---CCSEEEEESCSTTSCHHHHHHHHH
T ss_pred CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC------CC---CcCEEEEechhhhCCHHHHHHHHH
Confidence 4668999999 9999999999998888789999999987530001 24 799999854322 2245788
Q ss_pred HHhhcccCCeEEEEeCCCCC
Q 044253 85 TLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~~~~~ 104 (139)
.+.+.|+|||.+++.+..+.
T Consensus 272 ~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 272 RVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp HHHHHCCTTCEEEEEECCTT
T ss_pred HHHHhcCCCcEEEEEeeccC
Confidence 89999999999988665553
No 208
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.30 E-value=1.1e-07 Score=69.73 Aligned_cols=75 Identities=13% Similarity=-0.087 Sum_probs=57.5
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~ 85 (139)
..+..+.+|+++|+|+.+++.|+++ ..+++++++|+.+.++... ++ +||+|++.. .....+..
T Consensus 65 ~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~-----~~---~fD~v~~~~---~~~~~l~~ 127 (226)
T 3m33_A 65 RFGPQAARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGL-----GA---PFGLIVSRR---GPTSVILR 127 (226)
T ss_dssp HHGGGSSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTC-----CC---CEEEEEEES---CCSGGGGG
T ss_pred HHHHcCCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcC-----CC---CEEEEEeCC---CHHHHHHH
Confidence 3444467999999999999999998 2479999999964433100 25 899999974 34456778
Q ss_pred HhhcccCCeEEE
Q 044253 86 LMTLFKVGGIVI 97 (139)
Q Consensus 86 ~~~lL~~gG~ii 97 (139)
+.++|+|||+++
T Consensus 128 ~~~~LkpgG~l~ 139 (226)
T 3m33_A 128 LPELAAPDAHFL 139 (226)
T ss_dssp HHHHEEEEEEEE
T ss_pred HHHHcCCCcEEE
Confidence 889999999999
No 209
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.30 E-value=2.4e-06 Score=64.62 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=60.9
Q ss_pred cceeEEeCCc--------------cHHHHHHHHHHHcC----------C---CCcEEEEeCChHHHHHhhHHhhhcccCC
Q 044253 12 YFIVAIDVSR--------------ESSETGLPIIKKVE----------V---DLKINLMESRALPALDQLLKDEKIHFFF 64 (139)
Q Consensus 12 ~~v~~vD~s~--------------~~~~~Ar~n~~~~g----------~---~~~i~~~~~da~~~l~~~~~~~~~~~~~ 64 (139)
.+++++|.++ +....|+++++.+. + ..+++++.||+.+.++.+.... ..
T Consensus 97 l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~--~~-- 172 (257)
T 2qy6_A 97 LHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELISQLDDSL--NQ-- 172 (257)
T ss_dssp EEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEEEEEEC--CEEEEEEESCHHHHGGGSCGGG--TT--
T ss_pred eEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchhheeccCCceEEEEEECcHHHHHhhccccc--CC--
Confidence 5899999997 45557888877521 2 1468899999999887652110 13
Q ss_pred CceeEEEEcC--CCcc----hHHHHHHHhhcccCCeEEEE
Q 044253 65 ENFDYAFVDA--HKDN----YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 65 ~~fD~If~D~--~~~~----~~~~~~~~~~lL~~gG~ii~ 98 (139)
+||+||+|+ ++.+ +..+++.+.++|+|||+++.
T Consensus 173 -~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 173 -KVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp -CEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred -eEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 699999997 3222 56789999999999999986
No 210
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=98.30 E-value=3.3e-07 Score=67.01 Aligned_cols=82 Identities=10% Similarity=0.044 Sum_probs=63.3
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNY 82 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~ 82 (139)
..+..+.+|+++|+|+.+++.|+++. ...+++++++|+.+. + +. .+ +||+|++... ..+...+
T Consensus 70 ~l~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~ 135 (242)
T 3l8d_A 70 KLSRTGYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSL-P-FE-----NE---QFEAIMAINSLEWTEEPLRA 135 (242)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBC-S-SC-----TT---CEEEEEEESCTTSSSCHHHH
T ss_pred HHHHcCCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcC-C-CC-----CC---CccEEEEcChHhhccCHHHH
Confidence 34445779999999999999999874 235799999998764 2 11 35 8999998653 2355678
Q ss_pred HHHHhhcccCCeEEEEeCC
Q 044253 83 RETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~~ 101 (139)
++.+.+.|+|||++++...
T Consensus 136 l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 136 LNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHhCCCeEEEEEEc
Confidence 9999999999999988653
No 211
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=98.28 E-value=1.6e-06 Score=67.26 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=66.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~~ 85 (139)
..+++++|+ +++++.|++++...++.++++++.+|+.+..... .. +||+|++..... ....+++.
T Consensus 203 ~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~---~~D~v~~~~vlh~~~~~~~~~~l~~ 272 (352)
T 3mcz_A 203 QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------GG---AADVVMLNDCLHYFDAREAREVIGH 272 (352)
T ss_dssp TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT------TC---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC------CC---CccEEEEecccccCCHHHHHHHHHH
Confidence 568999999 8999999999999999889999999987642112 35 799999865322 23567888
Q ss_pred HhhcccCCeEEEEeCCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~~ 104 (139)
+.+.|+|||.+++.+..+.
T Consensus 273 ~~~~L~pgG~l~i~e~~~~ 291 (352)
T 3mcz_A 273 AAGLVKPGGALLILTMTMN 291 (352)
T ss_dssp HHHTEEEEEEEEEEEECCC
T ss_pred HHHHcCCCCEEEEEEeccC
Confidence 8999999999988765553
No 212
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.28 E-value=9.2e-07 Score=64.99 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=62.3
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-----cchH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-----DNYR 80 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-----~~~~ 80 (139)
..+..+.+|+++|+|+.+++.|++++ .. .+++++++|+.+.-.... ..... +||+|++.... ....
T Consensus 73 ~la~~~~~v~gvD~s~~~~~~a~~~~---~~-~~~~~~~~d~~~~~~~~~--~~~~~---~~d~v~~~~~~~~~~~~~~~ 143 (245)
T 3ggd_A 73 FLSQFFPRVIGLDVSKSALEIAAKEN---TA-ANISYRLLDGLVPEQAAQ--IHSEI---GDANIYMRTGFHHIPVEKRE 143 (245)
T ss_dssp HHHHHSSCEEEEESCHHHHHHHHHHS---CC-TTEEEEECCTTCHHHHHH--HHHHH---CSCEEEEESSSTTSCGGGHH
T ss_pred HHHHhCCCEEEEECCHHHHHHHHHhC---cc-cCceEEECcccccccccc--ccccc---CccEEEEcchhhcCCHHHHH
Confidence 34455568999999999999999987 22 479999999987522110 00023 59999987532 2456
Q ss_pred HHHHHHhhcccCCeEEEEeCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.+++.+.+.|+|||++++-+.
T Consensus 144 ~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 144 LLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp HHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEeC
Confidence 789999999999998766544
No 213
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.28 E-value=4e-07 Score=66.48 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=61.0
Q ss_pred hhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHH
Q 044253 8 TFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYR 83 (139)
Q Consensus 8 ~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~ 83 (139)
+..+. +|+++|+|+++++.|+++... .+++++++|+.+. + +. .. +||+|++.... .+....+
T Consensus 62 ~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l 127 (243)
T 3bkw_A 62 HEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKL-H-LP-----QD---SFDLAYSSLALHYVEDVARLF 127 (243)
T ss_dssp HHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGC-C-CC-----TT---CEEEEEEESCGGGCSCHHHHH
T ss_pred HHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhc-c-CC-----CC---CceEEEEeccccccchHHHHH
Confidence 33455 899999999999999987643 3699999999764 2 21 35 89999987532 2457788
Q ss_pred HHHhhcccCCeEEEEeC
Q 044253 84 ETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~ 100 (139)
+.+.++|+|||.+++..
T Consensus 128 ~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 128 RTVHQALSPGGHFVFST 144 (243)
T ss_dssp HHHHHHEEEEEEEEEEE
T ss_pred HHHHHhcCcCcEEEEEe
Confidence 99999999999998853
No 214
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=98.28 E-value=1.5e-06 Score=67.12 Aligned_cols=83 Identities=8% Similarity=-0.014 Sum_probs=66.0
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----chHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----NYRNYRE 84 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~~~~~~~ 84 (139)
...+++++|+ +++++.|++++...++.++++++.+|+.+ .+ .. +||+|++-.... ....+++
T Consensus 192 p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~------p~---~~D~v~~~~vlh~~~~~~~~~~l~ 258 (332)
T 3i53_A 192 EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD---PL------PA---GAGGYVLSAVLHDWDDLSAVAILR 258 (332)
T ss_dssp TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS---CC------CC---SCSEEEEESCGGGSCHHHHHHHHH
T ss_pred CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC---CC------CC---CCcEEEEehhhccCCHHHHHHHHH
Confidence 4568999999 99999999999999998899999999973 22 24 799999864322 1356788
Q ss_pred HHhhcccCCeEEEEeCCCCCc
Q 044253 85 TLMTLFKVGGIVIYDNTLWGG 105 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~~~~~~ 105 (139)
.+.+.|+|||.+++.+.....
T Consensus 259 ~~~~~L~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 259 RCAEAAGSGGVVLVIEAVAGD 279 (332)
T ss_dssp HHHHHHTTTCEEEEEECCCC-
T ss_pred HHHHhcCCCCEEEEEeecCCC
Confidence 899999999999887665543
No 215
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.27 E-value=7.2e-07 Score=62.62 Aligned_cols=78 Identities=6% Similarity=-0.038 Sum_probs=59.5
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC------cchH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK------DNYR 80 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~------~~~~ 80 (139)
.+..+.+++++|+|+.+++.+++++ .+++++++|+.+. + +. .+ +||+|++.+.. ....
T Consensus 64 l~~~~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~-~-~~-----~~---~~D~i~~~~~~~~~~~~~~~~ 127 (195)
T 3cgg_A 64 LSKQGHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVD-Q-IS-----ET---DFDLIVSAGNVMGFLAEDGRE 127 (195)
T ss_dssp HHHTTCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTS-C-CC-----CC---CEEEEEECCCCGGGSCHHHHH
T ss_pred HHHCCCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccC-C-CC-----CC---ceeEEEECCcHHhhcChHHHH
Confidence 3444678999999999999999876 2489999998764 1 21 35 89999998432 1235
Q ss_pred HHHHHHhhcccCCeEEEEeC
Q 044253 81 NYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+++.+.++|+|||.+++..
T Consensus 128 ~~l~~~~~~l~~~G~l~~~~ 147 (195)
T 3cgg_A 128 PALANIHRALGADGRAVIGF 147 (195)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEe
Confidence 67888889999999999853
No 216
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=98.26 E-value=1.9e-06 Score=64.35 Aligned_cols=79 Identities=14% Similarity=0.032 Sum_probs=54.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHH-HHhhc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRE-TLMTL 89 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~-~~~~l 89 (139)
..+|+++|+++.+++...+..+.. .+++++++|+..... ...- .+ +||+||+|.........+. .+.+.
T Consensus 101 ~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~-~~~~---~~---~~D~I~~d~a~~~~~~il~~~~~~~ 170 (232)
T 3id6_C 101 NGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQS-YKSV---VE---NVDVLYVDIAQPDQTDIAIYNAKFF 170 (232)
T ss_dssp TSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGG-TTTT---CC---CEEEEEECCCCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchh-hhcc---cc---ceEEEEecCCChhHHHHHHHHHHHh
Confidence 348999999999976655544433 479999999875311 1000 25 8999999987655444444 44459
Q ss_pred ccCCeEEEEe
Q 044253 90 FKVGGIVIYD 99 (139)
Q Consensus 90 L~~gG~ii~~ 99 (139)
|+|||.+++.
T Consensus 171 LkpGG~lvis 180 (232)
T 3id6_C 171 LKVNGDMLLV 180 (232)
T ss_dssp EEEEEEEEEE
T ss_pred CCCCeEEEEE
Confidence 9999999975
No 217
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.26 E-value=7.2e-07 Score=67.05 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=61.3
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYR 83 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~ 83 (139)
.+..+.+|+++|+|+++++.|++++ .+++++++|+... + . .+ +||+|++.... .+....+
T Consensus 75 l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~------~~---~fD~v~~~~~l~~~~d~~~~l 137 (279)
T 3ccf_A 75 IAQSGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNF-R-V------DK---PLDAVFSNAMLHWVKEPEAAI 137 (279)
T ss_dssp HHHTTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTC-C-C------SS---CEEEEEEESCGGGCSCHHHHH
T ss_pred HHhCCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhC-C-c------CC---CcCEEEEcchhhhCcCHHHHH
Confidence 3345679999999999999999875 4688999998763 2 1 35 89999987642 3557789
Q ss_pred HHHhhcccCCeEEEEeC
Q 044253 84 ETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~ 100 (139)
..+.+.|+|||++++..
T Consensus 138 ~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 138 ASIHQALKSGGRFVAEF 154 (279)
T ss_dssp HHHHHHEEEEEEEEEEE
T ss_pred HHHHHhcCCCcEEEEEe
Confidence 99999999999999853
No 218
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=98.25 E-value=2e-06 Score=67.57 Aligned_cols=82 Identities=6% Similarity=-0.013 Sum_probs=65.6
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRE 84 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~ 84 (139)
...+++++|+ +++++.|++++...++.++++++.+|+.+ .+ .. +||+|++.....+ ...+++
T Consensus 225 p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~------p~---~~D~v~~~~vlh~~~d~~~~~~L~ 291 (369)
T 3gwz_A 225 PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE---TI------PD---GADVYLIKHVLHDWDDDDVVRILR 291 (369)
T ss_dssp TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT---CC------CS---SCSEEEEESCGGGSCHHHHHHHHH
T ss_pred CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC---CC------CC---CceEEEhhhhhccCCHHHHHHHHH
Confidence 3568999999 99999999999999988899999999973 22 24 7999998653222 235788
Q ss_pred HHhhcccCCeEEEEeCCCCC
Q 044253 85 TLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~~~~~ 104 (139)
.+.+.|+|||.+++.+....
T Consensus 292 ~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 292 RIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp HHHTTCCTTCEEEEEEEBCC
T ss_pred HHHHHcCCCCEEEEEEeccC
Confidence 89999999999988665543
No 219
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.22 E-value=1.7e-06 Score=66.21 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=62.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcC------CCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcCCCc-----
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVE------VDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDAHKD----- 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g------~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~~~~----- 77 (139)
..+++++|+|+++++.|+++....+ ...+++++++|+.... ..+... .. +||+|++.....
T Consensus 57 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~---~fD~V~~~~~l~~~~~~ 130 (313)
T 3bgv_A 57 INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP---QM---CFDICSCQFVCHYSFES 130 (313)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST---TC---CEEEEEEETCGGGGGGS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC---CC---CEEEEEEecchhhccCC
Confidence 5689999999999999999987652 2347999999998641 001100 24 899999875431
Q ss_pred --chHHHHHHHhhcccCCeEEEEeC
Q 044253 78 --NYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 78 --~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
....++..+.+.|+|||++++..
T Consensus 131 ~~~~~~~l~~~~~~LkpgG~li~~~ 155 (313)
T 3bgv_A 131 YEQADMMLRNACERLSPGGYFIGTT 155 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEec
Confidence 23467888999999999998753
No 220
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=98.22 E-value=1e-06 Score=67.90 Aligned_cols=80 Identities=11% Similarity=-0.019 Sum_probs=64.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~ 85 (139)
..+++++|+ +.+++.|++++...++.++++++.+|+.+. + .. +||+|++.....+ ...+++.
T Consensus 191 ~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~---~~D~v~~~~vl~~~~~~~~~~~l~~ 257 (334)
T 2ip2_A 191 SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V------PS---NGDIYLLSRIIGDLDEAASLRLLGN 257 (334)
T ss_dssp TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C------CS---SCSEEEEESCGGGCCHHHHHHHHHH
T ss_pred CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C------CC---CCCEEEEchhccCCCHHHHHHHHHH
Confidence 568999999 999999999998888777899999998762 2 34 7999998654322 2367888
Q ss_pred HhhcccCCeEEEEeCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~ 103 (139)
+.+.|+|||++++.+...
T Consensus 258 ~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 258 CREAMAGDGRVVVIERTI 275 (334)
T ss_dssp HHHHSCTTCEEEEEECCB
T ss_pred HHHhcCCCCEEEEEEecc
Confidence 889999999998876654
No 221
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=98.22 E-value=2.5e-06 Score=66.40 Aligned_cols=79 Identities=10% Similarity=0.086 Sum_probs=63.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~ 85 (139)
..+++++|+ +++++.|++++...++.++++++.+|+.+. + .. .||+|++.....+ ...+++.
T Consensus 207 ~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~---~~D~v~~~~vl~~~~~~~~~~~l~~ 273 (360)
T 1tw3_A 207 HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---L------PR---KADAIILSFVLLNWPDHDAVRILTR 273 (360)
T ss_dssp TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SS---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC---C------CC---CccEEEEcccccCCCHHHHHHHHHH
Confidence 457899999 999999999999999877999999998752 2 24 6999998653322 2467888
Q ss_pred HhhcccCCeEEEEeCCC
Q 044253 86 LMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~ 102 (139)
+.+.|+|||.+++.+..
T Consensus 274 ~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 274 CAEALEPGGRILIHERD 290 (360)
T ss_dssp HHHTEEEEEEEEEEECC
T ss_pred HHHhcCCCcEEEEEEEe
Confidence 99999999998876554
No 222
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.21 E-value=4.6e-06 Score=63.24 Aligned_cols=86 Identities=7% Similarity=-0.019 Sum_probs=62.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH---Hhh--HHhhhcccCCCceeEEEEcCCCc-----chH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL---DQL--LKDEKIHFFFENFDYAFVDAHKD-----NYR 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l---~~~--~~~~~~~~~~~~fD~If~D~~~~-----~~~ 80 (139)
+.+|+++|+|+.+++.|++++.. .++++++++|+.+.- ... ....+ .. +||+|++..... ...
T Consensus 104 ~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~d-~~---~~d~v~~~~vlh~~~d~~~~ 176 (274)
T 2qe6_A 104 DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMID-FS---RPAAIMLVGMLHYLSPDVVD 176 (274)
T ss_dssp TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHCC-TT---SCCEEEETTTGGGSCTTTHH
T ss_pred CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccCC-CC---CCEEEEEechhhhCCcHHHH
Confidence 57899999999999999998843 357999999997531 100 00000 14 799999875321 356
Q ss_pred HHHHHHhhcccCCeEEEEeCCCC
Q 044253 81 NYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
.++..+.+.|+|||++++.+...
T Consensus 177 ~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 177 RVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHHHHHHHSCTTCEEEEEEEBC
T ss_pred HHHHHHHHhCCCCcEEEEEEecC
Confidence 78999999999999999877544
No 223
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=98.21 E-value=1.8e-06 Score=67.41 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=63.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~ 85 (139)
..+++++|+ +.+++.|++++...++.++++++++|+.+. + .. .||+|++.....+ ...+++.
T Consensus 206 ~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~---~~D~v~~~~vl~~~~~~~~~~~l~~ 272 (374)
T 1qzz_A 206 HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---L------PV---TADVVLLSFVLLNWSDEDALTILRG 272 (374)
T ss_dssp TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SC---CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc---C------CC---CCCEEEEeccccCCCHHHHHHHHHH
Confidence 568999999 999999999999999877999999998752 2 24 6999998653322 2367888
Q ss_pred HhhcccCCeEEEEeCC
Q 044253 86 LMTLFKVGGIVIYDNT 101 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~ 101 (139)
+.+.|+|||++++.+.
T Consensus 273 ~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 273 CVRALEPGGRLLVLDR 288 (374)
T ss_dssp HHHHEEEEEEEEEEEC
T ss_pred HHHhcCCCcEEEEEec
Confidence 9999999998887555
No 224
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.21 E-value=5.1e-07 Score=66.66 Aligned_cols=80 Identities=13% Similarity=-0.029 Sum_probs=59.9
Q ss_pred hhhcceeEEeCC-ccHHHHH---HHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------
Q 044253 9 FFIYFIVAIDVS-RESSETG---LPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------- 77 (139)
Q Consensus 9 ~~~~~v~~vD~s-~~~~~~A---r~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------- 77 (139)
..+.+|++||+| +.+++.| ++++...++. +++++++|+... +... .+ .+|.|++..+..
T Consensus 46 ~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l-~~~~-----~d---~v~~i~~~~~~~~~~~~~~ 115 (225)
T 3p2e_A 46 DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESL-PFEL-----KN---IADSISILFPWGTLLEYVI 115 (225)
T ss_dssp CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBC-CGGG-----TT---CEEEEEEESCCHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHh-hhhc-----cC---eEEEEEEeCCCcHHhhhhh
Confidence 456789999999 6666665 8888888874 799999999875 2210 24 788888865422
Q ss_pred -chHHHHHHHhhcccCCeEEEE
Q 044253 78 -NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 78 -~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.+...+..+.++|+|||.+++
T Consensus 116 ~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 116 KPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp TTCHHHHHHHHTTEEEEEEEEE
T ss_pred cchHHHHHHHHHhcCCCcEEEE
Confidence 234578889999999999988
No 225
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=98.21 E-value=6e-06 Score=62.57 Aligned_cols=81 Identities=9% Similarity=0.093 Sum_probs=57.3
Q ss_pred eEEeCCccHHHHHHHHHHHc-CCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhhc
Q 044253 15 VAIDVSRESSETGLPIIKKV-EVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMTL 89 (139)
Q Consensus 15 ~~vD~s~~~~~~Ar~n~~~~-g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~l 89 (139)
+++|.|++|++.|++.+... ++.. ++.+..+++.++...+.... +++ +||+|++... ..+....+..+.++
T Consensus 86 ~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~---~fD~V~~~~~l~~~~d~~~~l~~~~r~ 161 (292)
T 2aot_A 86 EVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK-ELQ---KWDFIHMIQMLYYVKDIPATLKFFHSL 161 (292)
T ss_dssp EEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT-CCC---CEEEEEEESCGGGCSCHHHHHHHHHHT
T ss_pred EEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc-CCC---ceeEEEEeeeeeecCCHHHHHHHHHHH
Confidence 99999999999999998764 4421 34556777776532210000 035 8999998753 23567789999999
Q ss_pred ccCCeEEEEe
Q 044253 90 FKVGGIVIYD 99 (139)
Q Consensus 90 L~~gG~ii~~ 99 (139)
|+|||++++-
T Consensus 162 LkpgG~l~i~ 171 (292)
T 2aot_A 162 LGTNAKMLII 171 (292)
T ss_dssp EEEEEEEEEE
T ss_pred cCCCcEEEEE
Confidence 9999999874
No 226
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.20 E-value=1.5e-06 Score=63.30 Aligned_cols=79 Identities=10% Similarity=0.022 Sum_probs=59.4
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC----C---cch
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH----K---DNY 79 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~----~---~~~ 79 (139)
.+..+.+++++|+|+++++.|++++ .+++++++|+.+. + . .. +||+|++... . ...
T Consensus 58 l~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~------~~---~~D~v~~~~~~~~~~~~~~~~ 120 (239)
T 3bxo_A 58 FTKEFGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDF-R-L------GR---KFSAVVSMFSSVGYLKTTEEL 120 (239)
T ss_dssp HHHHHSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTC-C-C------SS---CEEEEEECTTGGGGCCSHHHH
T ss_pred HHHhCCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHc-c-c------CC---CCcEEEEcCchHhhcCCHHHH
Confidence 3444568999999999999999874 3589999998764 1 1 25 8999995331 1 234
Q ss_pred HHHHHHHhhcccCCeEEEEeCCC
Q 044253 80 RNYRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~~~~ 102 (139)
..+++.+.++|+|||.+++....
T Consensus 121 ~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 121 GAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp HHHHHHHHHTEEEEEEEEECCCC
T ss_pred HHHHHHHHHhcCCCeEEEEEecc
Confidence 56788889999999999997543
No 227
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=98.19 E-value=2e-06 Score=64.36 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=59.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-hHHHHHHHhhc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-YRNYRETLMTL 89 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-~~~~~~~~~~l 89 (139)
..+|+++|+++++++.++++++.. .++..+.+|+.... ..... .+ .+|+||+|..... ....+..+.+.
T Consensus 102 ~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~-~~~~~---~~---~vDvVf~d~~~~~~~~~~l~~~~r~ 171 (233)
T 4df3_A 102 RGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPE-KYRHL---VE---GVDGLYADVAQPEQAAIVVRNARFF 171 (233)
T ss_dssp TCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGG-GGTTT---CC---CEEEEEECCCCTTHHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCcc-ccccc---cc---eEEEEEEeccCChhHHHHHHHHHHh
Confidence 357999999999999999887654 36888999887542 11110 35 8999999986543 34577888899
Q ss_pred ccCCeEEEEe
Q 044253 90 FKVGGIVIYD 99 (139)
Q Consensus 90 L~~gG~ii~~ 99 (139)
|||||.+++.
T Consensus 172 LKpGG~lvI~ 181 (233)
T 4df3_A 172 LRDGGYMLMA 181 (233)
T ss_dssp EEEEEEEEEE
T ss_pred ccCCCEEEEE
Confidence 9999999874
No 228
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=98.18 E-value=9.7e-07 Score=63.38 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=58.6
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhhc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMTL 89 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~l 89 (139)
+++++|+|+++++.|++++ .+++++++|+.+. + .. .+ +||+|++... ..+....++.+.++
T Consensus 58 ~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~~~ 121 (211)
T 2gs9_A 58 QKVGVEPSEAMLAVGRRRA------PEATWVRAWGEAL-P-FP-----GE---SFDVVLLFTTLEFVEDVERVLLEARRV 121 (211)
T ss_dssp EEEEECCCHHHHHHHHHHC------TTSEEECCCTTSC-C-SC-----SS---CEEEEEEESCTTTCSCHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHhC------CCcEEEEcccccC-C-CC-----CC---cEEEEEEcChhhhcCCHHHHHHHHHHH
Confidence 8999999999999999886 4689999998753 2 11 35 8999998753 23467788999999
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
|+|||.+++...
T Consensus 122 L~pgG~l~i~~~ 133 (211)
T 2gs9_A 122 LRPGGALVVGVL 133 (211)
T ss_dssp EEEEEEEEEEEE
T ss_pred cCCCCEEEEEec
Confidence 999999998644
No 229
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.14 E-value=1.5e-06 Score=65.95 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=56.2
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-----c
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-----N 78 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-----~ 78 (139)
++..+..+.+|+++|+|++|++.|++++.... -...+...+.. ..... .+ +||+|+++.... .
T Consensus 60 a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~-~~~~~------~~---~fD~Vv~~~~l~~~~~~~ 127 (261)
T 3iv6_A 60 IEKALERGASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAE-IPKEL------AG---HFDFVLNDRLINRFTTEE 127 (261)
T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSC-CCGGG------TT---CCSEEEEESCGGGSCHHH
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccc-ccccc------CC---CccEEEEhhhhHhCCHHH
Confidence 45566678899999999999999999986542 12333322220 00111 35 899999987432 2
Q ss_pred hHHHHHHHhhcccCCeEEEEe
Q 044253 79 YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~ 99 (139)
....+..+.++| |||++++.
T Consensus 128 ~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 128 ARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp HHHHHHHHHHHH-TTSEEEEE
T ss_pred HHHHHHHHHHhC-cCcEEEEE
Confidence 345677888899 99999875
No 230
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=98.12 E-value=8.2e-06 Score=63.60 Aligned_cols=80 Identities=5% Similarity=-0.071 Sum_probs=63.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~~ 85 (139)
..+++++|+ +.+++.|++++...++.++++++.+|+.+. .. . .+|+|++.....+ ...+++.
T Consensus 214 ~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-------~---~~D~v~~~~vlh~~~d~~~~~~l~~ 280 (359)
T 1x19_A 214 ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY-------P---EADAVLFCRILYSANEQLSTIMCKK 280 (359)
T ss_dssp TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CC-------C---CCSEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC--CC-------C---CCCEEEEechhccCCHHHHHHHHHH
Confidence 568999999 999999999999999888899999999764 22 3 4699998653322 4567888
Q ss_pred HhhcccCCeEEEEeCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~ 103 (139)
+.+.|+|||.+++-+...
T Consensus 281 ~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 281 AFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp HHTTCCTTCEEEEEEECC
T ss_pred HHHhcCCCCEEEEEeccc
Confidence 999999999997655443
No 231
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=98.11 E-value=2.4e-06 Score=64.55 Aligned_cols=87 Identities=8% Similarity=-0.014 Sum_probs=58.4
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHc-----------------CCC------------CcEEEEeCChHHHHHhhHHhhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKV-----------------EVD------------LKINLMESRALPALDQLLKDEKI 60 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~-----------------g~~------------~~i~~~~~da~~~l~~~~~~~~~ 60 (139)
.+.+|+++|+|+++++.|++++... |.. ..++++++|+...++. ....-+
T Consensus 93 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~ 171 (289)
T 2g72_A 93 HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPL-GAGSPA 171 (289)
T ss_dssp GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTT-CSSCSS
T ss_pred CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCc-cccccC
Confidence 4568999999999999999876532 100 0256777788663221 000000
Q ss_pred ccCCCceeEEEEcCCC-------cchHHHHHHHhhcccCCeEEEEeC
Q 044253 61 HFFFENFDYAFVDAHK-------DNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 61 ~~~~~~fD~If~D~~~-------~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+ +||+|++.... .++...+..+.++|+|||++++..
T Consensus 172 ~~---~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 172 PL---PADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp CS---SEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CC---CCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 23 69999987532 245677888999999999999864
No 232
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.10 E-value=4e-06 Score=59.84 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=54.0
Q ss_pred hhhhhhhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----
Q 044253 5 LESTFFIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----- 78 (139)
Q Consensus 5 ~~~~~~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----- 78 (139)
+..+..+. +|+++|+|+++++.|++|+. +++++++|+.+. .. +||+|+++++...
T Consensus 67 ~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~----------~~---~~D~v~~~~p~~~~~~~~ 127 (200)
T 1ne2_A 67 CGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI----------SG---KYDTWIMNPPFGSVVKHS 127 (200)
T ss_dssp HHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC----------CC---CEEEEEECCCC-------
T ss_pred HHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC----------CC---CeeEEEECCCchhccCch
Confidence 33444444 69999999999999999875 689999999863 24 8999999986422
Q ss_pred hHHHHHHHhhcccCCeEEEEe
Q 044253 79 YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~ 99 (139)
...+++.+.+.+ |+++++.
T Consensus 128 ~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 128 DRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp CHHHHHHHHHHE--EEEEEEE
T ss_pred hHHHHHHHHHhc--CcEEEEE
Confidence 245677777777 5555543
No 233
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.08 E-value=4.3e-06 Score=71.33 Aligned_cols=79 Identities=6% Similarity=-0.054 Sum_probs=58.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-------hHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------YRNYRE 84 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------~~~~~~ 84 (139)
.+++++|+|+++++.|++|+..+|+.+.+++.++|+.+...... .+ +||+|+++|++.. ...++.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~-----~~---~~d~Iv~NPPYG~Rlg~~~~l~~ly~ 328 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLP-----KG---PYGTVLSNPPYGERLDSEPALIALHS 328 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCT-----TC---CCCEEEECCCCCC---CCHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccc-----cC---CCCEEEeCCCccccccchhHHHHHHH
Confidence 57999999999999999999999998889999999987421110 23 6999999998532 222333
Q ss_pred ---HHhhcccCCeEEEE
Q 044253 85 ---TLMTLFKVGGIVIY 98 (139)
Q Consensus 85 ---~~~~lL~~gG~ii~ 98 (139)
..++.+.+||.+.+
T Consensus 329 ~l~~~lk~~~~g~~~~i 345 (703)
T 3v97_A 329 LLGRIMKNQFGGWNLSL 345 (703)
T ss_dssp HHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHhhCCCCeEEE
Confidence 33344557888654
No 234
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.08 E-value=1.3e-06 Score=61.34 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=54.4
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------- 77 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------- 77 (139)
+..+..+ +|+++|+|+++++. .++++++++|+.+.+. .+ +||+|+++++..
T Consensus 39 ~~l~~~~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~--------~~---~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 39 EQLRKRN-TVVSTDLNIRALES----------HRGGNLVRADLLCSIN--------QE---SVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp HHHTTTS-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBC--------GG---GCSEEEECCCCBTTCCCTT
T ss_pred HHHHhcC-cEEEEECCHHHHhc----------ccCCeEEECChhhhcc--------cC---CCCEEEECCCCccCCcccc
Confidence 3444455 99999999999988 3578999999987421 35 899999988643
Q ss_pred -----chHHHHHHHhhcccCCeEEEEeC
Q 044253 78 -----NYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 78 -----~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
.....++.+.+.+ |||++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~ 123 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLV 123 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence 1245677777777 999998743
No 235
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.07 E-value=3.4e-06 Score=71.20 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=58.7
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----CcchHHHHHHHh
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNYRNYRETLM 87 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~~~~~~~~~ 87 (139)
+|++||.|+ ++..|++....+|+.++|++++||+.+. ++ .+ +.|+|+..-- .+.....+....
T Consensus 387 kVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev--~L------PE---KVDIIVSEwMG~fLl~E~mlevL~Ard 454 (637)
T 4gqb_A 387 KLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREW--VA------PE---KADIIVSELLGSFADNELSPECLDGAQ 454 (637)
T ss_dssp EEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTC--CC------SS---CEEEEECCCCBTTBGGGCHHHHHHHHG
T ss_pred EEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceec--cC------Cc---ccCEEEEEcCcccccccCCHHHHHHHH
Confidence 689999997 7888999999999999999999999886 23 35 8999998641 122345566666
Q ss_pred hcccCCeEEE
Q 044253 88 TLFKVGGIVI 97 (139)
Q Consensus 88 ~lL~~gG~ii 97 (139)
+.|+|||+++
T Consensus 455 r~LKPgGimi 464 (637)
T 4gqb_A 455 HFLKDDGVSI 464 (637)
T ss_dssp GGEEEEEEEE
T ss_pred HhcCCCcEEc
Confidence 8999999986
No 236
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.06 E-value=3.2e-06 Score=68.21 Aligned_cols=77 Identities=10% Similarity=0.044 Sum_probs=61.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----------- 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----------- 78 (139)
..+++++|+++.+++.|+.|+...|+.. +++++++|++... . .. +||+|+.+|+...
T Consensus 208 ~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~--~------~~---~fD~Iv~NPPf~~~~~~~~~~~~~ 276 (445)
T 2okc_A 208 DKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE--P------ST---LVDVILANPPFGTRPAGSVDINRP 276 (445)
T ss_dssp HTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC--C------SS---CEEEEEECCCSSCCCTTCCCCCCT
T ss_pred CeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc--c------cC---CcCEEEECCCCCCcccccchhhHh
Confidence 4689999999999999999999988853 6889999987641 1 34 8999999986432
Q ss_pred ---------hHHHHHHHhhcccCCeEEEE
Q 044253 79 ---------YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ---------~~~~~~~~~~lL~~gG~ii~ 98 (139)
...+++.+.++|++||.+++
T Consensus 277 ~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~ 305 (445)
T 2okc_A 277 DFYVETKNNQLNFLQHMMLMLKTGGRAAV 305 (445)
T ss_dssp TSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred hcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence 13578888899999999854
No 237
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.05 E-value=1.4e-06 Score=63.05 Aligned_cols=77 Identities=12% Similarity=-0.005 Sum_probs=54.8
Q ss_pred hcceeEEeCCccHHHHHHH----HHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--------c
Q 044253 11 IYFIVAIDVSRESSETGLP----IIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--------N 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~----n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--------~ 78 (139)
+.+|+++|+|+++++.+.+ +....++ ++++++++|+.+. +.. .. . |.|++..... +
T Consensus 51 ~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l-~~~------~~---~-d~v~~~~~~~~~~~~~~~~ 118 (218)
T 3mq2_A 51 SRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERL-PPL------SG---V-GELHVLMPWGSLLRGVLGS 118 (218)
T ss_dssp TEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTC-CSC------CC---E-EEEEEESCCHHHHHHHHTS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhC-CCC------CC---C-CEEEEEccchhhhhhhhcc
Confidence 6899999999998886433 3334565 4799999999873 221 23 4 7777544221 2
Q ss_pred hHHHHHHHhhcccCCeEEEEe
Q 044253 79 YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~ 99 (139)
...+++.+.+.|+|||.+++.
T Consensus 119 ~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 119 SPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp SSHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEE
Confidence 256788999999999999984
No 238
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=97.98 E-value=8.1e-06 Score=62.23 Aligned_cols=63 Identities=11% Similarity=0.004 Sum_probs=50.7
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY 79 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~ 79 (139)
...+..+.+|+++|+|+.+++.+++++...+..++++++++|+.+. . -. +||+|+++.+....
T Consensus 44 ~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~--~-------~~---~fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 44 VKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT--D-------LP---FFDTCVANLPYQIS 106 (285)
T ss_dssp HHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS--C-------CC---CCSEEEEECCGGGH
T ss_pred HHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc--c-------ch---hhcEEEEecCcccc
Confidence 3445556799999999999999999998777766899999999764 1 24 79999999876443
No 239
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.95 E-value=1.6e-05 Score=65.95 Aligned_cols=78 Identities=5% Similarity=-0.015 Sum_probs=61.6
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCC----cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---------
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDL----KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~----~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------- 78 (139)
.+++++|+++.++..|+.|+...|+.. ++.++++|++...... .. +||+|+.+|+...
T Consensus 212 ~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~------~~---~fD~Vv~NPPf~~~~~~~~~~~ 282 (541)
T 2ar0_A 212 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN------LP---KAHIVATNPPFGSAAGTNITRT 282 (541)
T ss_dssp TSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHT------SC---CEEEEEECCCCTTCSSCCCCSC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCccccccc------cc---CCeEEEECCCcccccchhhHhh
Confidence 479999999999999999999888853 2889999987653211 35 8999999986432
Q ss_pred --------hHHHHHHHhhcccCCeEEEE
Q 044253 79 --------YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 --------~~~~~~~~~~lL~~gG~ii~ 98 (139)
...++..+.++|++||++++
T Consensus 283 ~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~ 310 (541)
T 2ar0_A 283 FVHPTSNKQLCFMQHIIETLHPGGRAAV 310 (541)
T ss_dssp CSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence 13578888899999998764
No 240
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.95 E-value=3.3e-06 Score=62.82 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=57.8
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC----cchHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK----DNYRN 81 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~----~~~~~ 81 (139)
..+..+.+|+++|+|+++++.|+++.. .+ ++++|+.+. + +. .+ +||+|++.... .+...
T Consensus 71 ~l~~~~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~-~-~~-----~~---~fD~v~~~~~~~~~~~~~~~ 133 (260)
T 2avn_A 71 FLQERGFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDL-P-FP-----SG---AFEAVLALGDVLSYVENKDK 133 (260)
T ss_dssp HHHTTTCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSC-C-SC-----TT---CEEEEEECSSHHHHCSCHHH
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHC-C-CC-----CC---CEEEEEEcchhhhccccHHH
Confidence 334456789999999999999998753 12 788888753 2 21 35 89999986421 23577
Q ss_pred HHHHHhhcccCCeEEEEe
Q 044253 82 YRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~ 99 (139)
.++.+.+.|+|||.+++.
T Consensus 134 ~l~~~~~~LkpgG~l~~~ 151 (260)
T 2avn_A 134 AFSEIRRVLVPDGLLIAT 151 (260)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEE
Confidence 889999999999999875
No 241
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=97.95 E-value=2.4e-06 Score=61.55 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=55.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~~ 87 (139)
+.+++++|+|+++++.++++. .+++++|+.+....+. .+ +||+|++.... .+...+++.+.
T Consensus 54 ~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~ 117 (230)
T 3cc8_A 54 GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYE-----EE---QFDCVIFGDVLEHLFDPWAVIEKVK 117 (230)
T ss_dssp TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSC-----TT---CEEEEEEESCGGGSSCHHHHHHHTG
T ss_pred CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCC-----CC---ccCEEEECChhhhcCCHHHHHHHHH
Confidence 578999999999999998754 2688888875311111 35 89999986532 34567889999
Q ss_pred hcccCCeEEEEeC
Q 044253 88 TLFKVGGIVIYDN 100 (139)
Q Consensus 88 ~lL~~gG~ii~~~ 100 (139)
+.|+|||++++..
T Consensus 118 ~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 118 PYIKQNGVILASI 130 (230)
T ss_dssp GGEEEEEEEEEEE
T ss_pred HHcCCCCEEEEEe
Confidence 9999999999853
No 242
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=97.95 E-value=5e-06 Score=65.97 Aligned_cols=82 Identities=6% Similarity=0.068 Sum_probs=56.2
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNY 82 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~ 82 (139)
..+..+.+|+++|+|+.+++.|+++ +......+...+....++. . ++ +||+|++... ..++..+
T Consensus 124 ~l~~~g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~-~-----~~---~fD~I~~~~vl~h~~d~~~~ 190 (416)
T 4e2x_A 124 TIQEAGVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRR-T-----EG---PANVIYAANTLCHIPYVQSV 190 (416)
T ss_dssp HHHHTTCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHH-H-----HC---CEEEEEEESCGGGCTTHHHH
T ss_pred HHHHcCCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhccc-C-----CC---CEEEEEECChHHhcCCHHHH
Confidence 3344567999999999999999876 4432222222222222222 1 36 8999998753 2356788
Q ss_pred HHHHhhcccCCeEEEEeC
Q 044253 83 RETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~~ 100 (139)
++.+.++|+|||++++..
T Consensus 191 l~~~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 191 LEGVDALLAPDGVFVFED 208 (416)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHcCCCeEEEEEe
Confidence 999999999999999863
No 243
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=97.90 E-value=1.2e-05 Score=61.50 Aligned_cols=89 Identities=12% Similarity=-0.033 Sum_probs=62.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCcee-----EEEEcCCCc------c
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFD-----YAFVDAHKD------N 78 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD-----~If~D~~~~------~ 78 (139)
..++|++||.|+.|++.||+.+...+. .+++++++|+.+.-.-+....- .. .|| .|++.+... .
T Consensus 104 P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~~~~~~~l~~~~~-~~---~~D~~~p~av~~~avLH~l~d~~~ 178 (277)
T 3giw_A 104 PESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADMLDPASILDAPEL-RD---TLDLTRPVALTVIAIVHFVLDEDD 178 (277)
T ss_dssp TTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCTTCHHHHHTCHHH-HT---TCCTTSCCEEEEESCGGGSCGGGC
T ss_pred CCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEecccChhhhhccccc-cc---ccCcCCcchHHhhhhHhcCCchhh
Confidence 367999999999999999999875542 5799999999875211100000 13 455 466665321 1
Q ss_pred hHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 79 YRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
...++..+.+.|+|||++++.+...
T Consensus 179 p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 179 AVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp HHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred HHHHHHHHHHhCCCCcEEEEEeccC
Confidence 3568899999999999999876543
No 244
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=97.89 E-value=1.2e-06 Score=65.30 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=58.1
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYR 83 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~ 83 (139)
.+..+.+|+++|+|+.+++.|+++. +++++++|+.+. + +. .+ +||+|++... ..+....+
T Consensus 52 l~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l 114 (261)
T 3ege_A 52 LANQGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL-A-LP-----DK---SVDGVISILAIHHFSHLEKSF 114 (261)
T ss_dssp HHTTTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC-C-SC-----TT---CBSEEEEESCGGGCSSHHHHH
T ss_pred HHhCCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC-C-CC-----CC---CEeEEEEcchHhhccCHHHHH
Confidence 3446789999999999999887643 699999999763 2 21 35 8999998763 24567889
Q ss_pred HHHhhcccCCeEEEEeC
Q 044253 84 ETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~~~ 100 (139)
+.+.+.|+ ||++++..
T Consensus 115 ~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 115 QEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp HHHHHHBC-SSCEEEEE
T ss_pred HHHHHHhC-CcEEEEEE
Confidence 99999999 99666543
No 245
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=97.88 E-value=2.8e-06 Score=59.48 Aligned_cols=72 Identities=7% Similarity=0.068 Sum_probs=54.6
Q ss_pred EEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh-hHHhhhcccCCCceeEEEEcCC---C-cchHHHHHHHhhcc
Q 044253 16 AIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ-LLKDEKIHFFFENFDYAFVDAH---K-DNYRNYRETLMTLF 90 (139)
Q Consensus 16 ~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~-~~~~~~~~~~~~~fD~If~D~~---~-~~~~~~~~~~~~lL 90 (139)
.+|+|++|++.|+++.. .+++++++|+.+.... .. .+ +||+|++... . .+....+..+.+.|
T Consensus 25 ~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~-----~~---~fD~V~~~~~l~~~~~~~~~~l~~~~r~L 91 (176)
T 2ld4_A 25 PVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHK-----ES---SFDIILSGLVPGSTTLHSAEILAEIARIL 91 (176)
T ss_dssp CHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCC-----SS---CEEEEEECCSTTCCCCCCHHHHHHHHHHE
T ss_pred eeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCC-----CC---CEeEEEECChhhhcccCHHHHHHHHHHHC
Confidence 49999999999998753 2489999999864210 01 35 8999998532 1 35678899999999
Q ss_pred cCCeEEEEeC
Q 044253 91 KVGGIVIYDN 100 (139)
Q Consensus 91 ~~gG~ii~~~ 100 (139)
+|||++++.+
T Consensus 92 kpgG~l~~~~ 101 (176)
T 2ld4_A 92 RPGGCLFLKE 101 (176)
T ss_dssp EEEEEEEEEE
T ss_pred CCCEEEEEEc
Confidence 9999999853
No 246
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=97.87 E-value=1.1e-05 Score=55.37 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=51.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH--HhhHHhhhcccCCCceeEEEEcCCCc---ch------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL--DQLLKDEKIHFFFENFDYAFVDAHKD---NY------ 79 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l--~~~~~~~~~~~~~~~fD~If~D~~~~---~~------ 79 (139)
..+++++|+++ ++.. .+++++++|+.+.- ..+..... .. +||+|++++... ..
T Consensus 47 ~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~-~~---~~D~i~~~~~~~~~~~~~~~~~~ 110 (180)
T 1ej0_A 47 KGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVG-DS---KVQVVMSDMAPNMSGTPAVDIPR 110 (180)
T ss_dssp TCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHT-TC---CEEEEEECCCCCCCSCHHHHHHH
T ss_pred CCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCC-CC---ceeEEEECCCccccCCCccchHH
Confidence 37899999999 6532 47999999987641 11110000 35 899999987432 11
Q ss_pred -----HHHHHHHhhcccCCeEEEEeC
Q 044253 80 -----RNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 80 -----~~~~~~~~~lL~~gG~ii~~~ 100 (139)
..+++.+.++|+|||.+++..
T Consensus 111 ~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 111 AMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 467888889999999999743
No 247
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=97.86 E-value=6.8e-06 Score=62.69 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=56.9
Q ss_pred cceeEEeCCccHHHHHHHHHH--------------H---------cC-------CCCcEEEEeCChHHHHHhhHHhhhcc
Q 044253 12 YFIVAIDVSRESSETGLPIIK--------------K---------VE-------VDLKINLMESRALPALDQLLKDEKIH 61 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~--------------~---------~g-------~~~~i~~~~~da~~~l~~~~~~~~~~ 61 (139)
.+|+++|+|+++++.|++++- + .| +.+++++.++|..+. .+.. .
T Consensus 138 ~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~--~~~~----~ 211 (274)
T 1af7_A 138 WKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK--QYNV----P 211 (274)
T ss_dssp EEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS--SCCC----C
T ss_pred eEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCC--CCCc----C
Confidence 589999999999999998741 0 01 113699999998762 1100 2
Q ss_pred cCCCceeEEEEcCCC-----cchHHHHHHHhhcccCCeEEEEeC
Q 044253 62 FFFENFDYAFVDAHK-----DNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 62 ~~~~~fD~If~D~~~-----~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
+ +||+|++--.. .....++..+.+.|+|||++++..
T Consensus 212 ~---~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 212 G---PFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp C---CEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred C---CeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4 89999995321 122567888889999999999853
No 248
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=97.84 E-value=1e-05 Score=62.07 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=45.6
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN 78 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~ 78 (139)
...+..+.+|+++|+|+.+++.|++++...++ ++++++++|+.+. + .. +||+|+++++...
T Consensus 58 ~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~-~--------~~---~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 58 VKLLPLAKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKT-V--------FP---KFDVCTANIPYKI 118 (299)
T ss_dssp HHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSS-C--------CC---CCSEEEEECCGGG
T ss_pred HHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhC-C--------cc---cCCEEEEcCCccc
Confidence 34444567999999999999999999988887 5899999998764 1 24 7999999987543
No 249
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.84 E-value=2.6e-05 Score=60.22 Aligned_cols=60 Identities=18% Similarity=0.045 Sum_probs=46.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
+.+|+++|+|+++++.|++|++.+| ++++++++|+......+.. .+ .. +||.|++|++..
T Consensus 50 ~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~-~g-~~---~~D~Vl~D~gvS 109 (301)
T 1m6y_A 50 GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKT-LG-IE---KVDGILMDLGVS 109 (301)
T ss_dssp TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHH-TT-CS---CEEEEEEECSCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHh-cC-CC---CCCEEEEcCccc
Confidence 5799999999999999999998887 5899999998775322211 00 15 799999998653
No 250
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=97.79 E-value=2.5e-05 Score=59.60 Aligned_cols=86 Identities=12% Similarity=-0.004 Sum_probs=65.3
Q ss_pred CCchhhhhh--hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253 2 PFNLESTFF--IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY 79 (139)
Q Consensus 2 ~~~~~~~~~--~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~ 79 (139)
||+++++.. .++++++|+|+.+++.+++|+..+|.. .++.++|..... . .. +||+|++--.....
T Consensus 145 pLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~--p------~~---~~DvaL~lkti~~L 211 (281)
T 3lcv_B 145 PLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR--L------DE---PADVTLLLKTLPCL 211 (281)
T ss_dssp GGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC--C------CS---CCSEEEETTCHHHH
T ss_pred HHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC--C------CC---CcchHHHHHHHHHh
Confidence 778887654 679999999999999999999999985 788888886542 1 35 89999886422111
Q ss_pred -----HHHHHHHhhcccCCeEEEEeCC
Q 044253 80 -----RNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 80 -----~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
...+ .+++.|+++|++|.-..
T Consensus 212 e~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 212 ETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp HHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred hhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 1234 67889999999996554
No 251
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=97.79 E-value=1.9e-05 Score=68.68 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=58.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHc------CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch-----H
Q 044253 12 YFIVAIDVSRESSETGLPIIKKV------EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY-----R 80 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~------g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~-----~ 80 (139)
.+|++||+|+.+++.|++++... ++ .+++++++|+.+. +.. .. +||+|++......+ .
T Consensus 747 a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dL-p~~------d~---sFDlVV~~eVLeHL~dp~l~ 815 (950)
T 3htx_A 747 QTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEF-DSR------LH---DVDIGTCLEVIEHMEEDQAC 815 (950)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSC-CTT------SC---SCCEEEEESCGGGSCHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhC-Ccc------cC---CeeEEEEeCchhhCChHHHH
Confidence 68999999999999999987643 44 4799999999874 211 35 89999997643322 3
Q ss_pred HHHHHHhhcccCCeEEEEe
Q 044253 81 NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~~ 99 (139)
.+++.+.++|+|| ++++.
T Consensus 816 ~~L~eI~RvLKPG-~LIIS 833 (950)
T 3htx_A 816 EFGEKVLSLFHPK-LLIVS 833 (950)
T ss_dssp HHHHHHHHTTCCS-EEEEE
T ss_pred HHHHHHHHHcCCC-EEEEE
Confidence 4778889999999 66554
No 252
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=97.78 E-value=1.5e-05 Score=59.30 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=53.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++|+|+++++.|+++. .+++++.+|+... + +. .+ +||+|++.... ..++.+.++|
T Consensus 109 ~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~~----~~l~~~~~~L 168 (269)
T 1p91_A 109 EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-FS-----DT---SMDAIIRIYAP----CKAEELARVV 168 (269)
T ss_dssp TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-BC-----TT---CEEEEEEESCC----CCHHHHHHHE
T ss_pred CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhC-C-CC-----CC---ceeEEEEeCCh----hhHHHHHHhc
Confidence 578999999999999998864 3578999998653 2 11 35 89999985432 2467788999
Q ss_pred cCCeEEEEe
Q 044253 91 KVGGIVIYD 99 (139)
Q Consensus 91 ~~gG~ii~~ 99 (139)
+|||++++.
T Consensus 169 ~pgG~l~~~ 177 (269)
T 1p91_A 169 KPGGWVITA 177 (269)
T ss_dssp EEEEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999874
No 253
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=97.67 E-value=8.1e-05 Score=63.55 Aligned_cols=80 Identities=9% Similarity=-0.034 Sum_probs=57.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC-----CcchHHHHHHH
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH-----KDNYRNYRETL 86 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~-----~~~~~~~~~~~ 86 (139)
.+|++||.|+.+...++.... +|+.++|+++++|+.+.-...... + .+ +.|+|+..-- .......+..+
T Consensus 447 ~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~~~~-~-~e---kVDIIVSElmGsfl~nEL~pe~Ld~v 520 (745)
T 3ua3_A 447 VKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIAKDR-G-FE---QPDIIVSELLGSFGDNELSPECLDGV 520 (745)
T ss_dssp EEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHHHHT-T-CC---CCSEEEECCCBTTBGGGSHHHHHHTT
T ss_pred cEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccccccC-C-CC---cccEEEEeccccccchhccHHHHHHH
Confidence 499999999988876665554 888889999999999873210000 0 24 8999998752 12234567777
Q ss_pred hhcccCCeEEE
Q 044253 87 MTLFKVGGIVI 97 (139)
Q Consensus 87 ~~lL~~gG~ii 97 (139)
.+.|+|||+++
T Consensus 521 ~r~Lkp~Gi~i 531 (745)
T 3ua3_A 521 TGFLKPTTISI 531 (745)
T ss_dssp GGGSCTTCEEE
T ss_pred HHhCCCCcEEE
Confidence 78999999986
No 254
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.66 E-value=2.6e-05 Score=56.36 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=54.7
Q ss_pred eEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC---CcchHHHHHHHhhccc
Q 044253 15 VAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH---KDNYRNYRETLMTLFK 91 (139)
Q Consensus 15 ~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~---~~~~~~~~~~~~~lL~ 91 (139)
+++|+|+++++.++++ +++++++|+... + .. .+ +||+|++... ..+...+++.+.+.|+
T Consensus 69 ~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~~l~~~~~~L~ 130 (219)
T 1vlm_A 69 IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-LK-----DE---SFDFALMVTTICFVDDPERALKEAYRILK 130 (219)
T ss_dssp EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-SC-----TT---CEEEEEEESCGGGSSCHHHHHHHHHHHEE
T ss_pred hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-CC-----CC---CeeEEEEcchHhhccCHHHHHHHHHHHcC
Confidence 9999999999999987 478899988653 2 11 35 8999998753 2345778899999999
Q ss_pred CCeEEEEeCC
Q 044253 92 VGGIVIYDNT 101 (139)
Q Consensus 92 ~gG~ii~~~~ 101 (139)
|||.+++...
T Consensus 131 pgG~l~i~~~ 140 (219)
T 1vlm_A 131 KGGYLIVGIV 140 (219)
T ss_dssp EEEEEEEEEE
T ss_pred CCcEEEEEEe
Confidence 9999998644
No 255
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=97.62 E-value=0.00022 Score=51.10 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=49.6
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-----HHhhHHhhhcccCCCceeEEEEcCCCc--c--
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-----LDQLLKDEKIHFFFENFDYAFVDAHKD--N-- 78 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-----l~~~~~~~~~~~~~~~fD~If~D~~~~--~-- 78 (139)
+....+|++||+++.. .. .+++++++|+.+. +.....+.+ .. +||+|++|+... .
T Consensus 44 a~~~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~-~~---~~D~Vlsd~~~~~~g~~ 107 (191)
T 3dou_A 44 NSLARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEG-IE---KVDDVVSDAMAKVSGIP 107 (191)
T ss_dssp TTTCSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHT-CS---SEEEEEECCCCCCCSCH
T ss_pred HHcCCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhccc-CC---cceEEecCCCcCCCCCc
Confidence 3346789999999862 22 4799999998642 111110000 14 899999997321 0
Q ss_pred ----------hHHHHHHHhhcccCCeEEEEeC
Q 044253 79 ----------YRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 79 ----------~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
....++.+.++|+|||.+++.-
T Consensus 108 ~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 108 SRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 1235666778999999999753
No 256
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.61 E-value=1.5e-05 Score=63.02 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=52.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
..+++++|+|+.+++.| .+++++++|+..... .. +||+|+++|+...
T Consensus 64 ~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~--------~~---~fD~Ii~NPPy~~~~~~~~~~~~~~ 122 (421)
T 2ih2_A 64 AYRFVGVEIDPKALDLP----------PWAEGILADFLLWEP--------GE---AFDLILGNPPYGIVGEASKYPIHVF 122 (421)
T ss_dssp CSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCC--------SS---CEEEEEECCCCCCBSCTTTCSBCCC
T ss_pred CCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCc--------cC---CCCEEEECcCccCcccccccccccC
Confidence 46899999999999887 479999999986421 35 8999999875311
Q ss_pred --------------------hHHHHHHHhhcccCCeEEEE
Q 044253 79 --------------------YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 --------------------~~~~~~~~~~lL~~gG~ii~ 98 (139)
+..+++.+.++|++||.+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~ 162 (421)
T 2ih2_A 123 KAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF 162 (421)
T ss_dssp HHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence 12457788899999999875
No 257
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=97.58 E-value=5e-06 Score=64.05 Aligned_cols=80 Identities=16% Similarity=0.008 Sum_probs=53.8
Q ss_pred hhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEE-eCChHHHHH-hhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253 6 ESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLM-ESRALPALD-QLLKDEKIHFFFENFDYAFVDAHKDNYRNY 82 (139)
Q Consensus 6 ~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~-~~da~~~l~-~~~~~~~~~~~~~~fD~If~D~~~~~~~~~ 82 (139)
..+..+ .+|++||+|++|++.+.++ ..++... ..++...-. .+. .. +||+|++|.........
T Consensus 102 ~L~~~ga~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~l~-----~~---~fD~v~~d~sf~sl~~v 167 (291)
T 3hp7_A 102 VMLQNGAKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVDFT-----EG---LPSFASIDVSFISLNLI 167 (291)
T ss_dssp HHHHTTCSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGGCT-----TC---CCSEEEECCSSSCGGGT
T ss_pred HHHhCCCCEEEEEECCHHHHHHHHHh------CcccceecccCceecchhhCC-----CC---CCCEEEEEeeHhhHHHH
Confidence 334444 4899999999999986442 1244333 334433211 111 23 59999999876667778
Q ss_pred HHHHhhcccCCeEEEEe
Q 044253 83 RETLMTLFKVGGIVIYD 99 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~~ 99 (139)
+..+.++|+|||.+++-
T Consensus 168 L~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 168 LPALAKILVDGGQVVAL 184 (291)
T ss_dssp HHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHcCcCCEEEEE
Confidence 99999999999999873
No 258
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.57 E-value=3e-05 Score=64.33 Aligned_cols=79 Identities=6% Similarity=0.039 Sum_probs=60.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN------------ 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~------------ 78 (139)
..+++++|+++.++..|+.|+...|+..++.+.++|.+.. +... .. +||+|+++|+...
T Consensus 283 ~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~-~~~~-----~~---~fD~Iv~NPPf~~~~~~~~~~~~d~ 353 (544)
T 3khk_A 283 QISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLD-DQHP-----DL---RADFVMTNPPFNMKDWWHEKLADDP 353 (544)
T ss_dssp GEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTS-CSCT-----TC---CEEEEEECCCSSCCSCCCGGGTTCG
T ss_pred hceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcC-cccc-----cc---cccEEEECCCcCCccccchhhhhhh
Confidence 4579999999999999999999999876666689998753 1111 35 8999999986431
Q ss_pred -------------h-------HHHHHHHhhcccCCeEEEE
Q 044253 79 -------------Y-------RNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 -------------~-------~~~~~~~~~lL~~gG~ii~ 98 (139)
. ..++..+..+|++||++++
T Consensus 354 r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai 393 (544)
T 3khk_A 354 RWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL 393 (544)
T ss_dssp GGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred hhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence 0 1467888899999999643
No 259
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=97.54 E-value=0.00011 Score=60.99 Aligned_cols=62 Identities=18% Similarity=0.049 Sum_probs=51.1
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
+.+.|+.+++|++||.++.+++.|+......|.. ++++.++++.+...... .+ +||+|++-.
T Consensus 81 ~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~-----~~---~fD~v~~~e 142 (569)
T 4azs_A 81 SLSLASKGATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALE-----EG---EFDLAIGLS 142 (569)
T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCC-----TT---SCSEEEEES
T ss_pred HHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhcc-----CC---CccEEEECc
Confidence 4566788999999999999999999999888753 69999999998865432 35 899999854
No 260
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=97.54 E-value=6.2e-06 Score=61.24 Aligned_cols=79 Identities=13% Similarity=0.025 Sum_probs=49.8
Q ss_pred hhhhhh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHH-HhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253 6 ESTFFI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPAL-DQLLKDEKIHFFFENFDYAFVDAHKDNYRNY 82 (139)
Q Consensus 6 ~~~~~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l-~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~ 82 (139)
..+..+ .+|++||+|++|++.|+++.. ++.... .++.... ..+. .. .||.+.+|........+
T Consensus 54 ~la~~g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~~~-----~~---~~d~~~~D~v~~~l~~~ 119 (232)
T 3opn_A 54 VMLQNGAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLADFE-----QG---RPSFTSIDVSFISLDLI 119 (232)
T ss_dssp HHHHTTCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGGCC-----SC---CCSEEEECCSSSCGGGT
T ss_pred HHHhcCCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhHcC-----cC---CCCEEEEEEEhhhHHHH
Confidence 344445 489999999999999877532 222221 1221110 1110 11 26777777655455778
Q ss_pred HHHHhhcccCCeEEEE
Q 044253 83 RETLMTLFKVGGIVIY 98 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~ 98 (139)
+..+.++|+|||.+++
T Consensus 120 l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 120 LPPLYEILEKNGEVAA 135 (232)
T ss_dssp HHHHHHHSCTTCEEEE
T ss_pred HHHHHHhccCCCEEEE
Confidence 8999999999999987
No 261
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.53 E-value=0.00011 Score=60.92 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=60.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHH-HhhHHhhhcccCCCceeEEEEcCCCcc----------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPAL-DQLLKDEKIHFFFENFDYAFVDAHKDN---------- 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l-~~~~~~~~~~~~~~~fD~If~D~~~~~---------- 78 (139)
..+++++|+++.+...|+.|+...|+. +++.+.++|.+..- +... .. +||+|+.+||...
T Consensus 248 ~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~-----~~---~fD~IvaNPPf~~~~~~~~~~~~ 319 (542)
T 3lkd_A 248 TVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQE-----PT---NFDGVLMNPPYSAKWSASSGFMD 319 (542)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSS-----CC---CBSEEEECCCTTCCCCCCGGGGG
T ss_pred CceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccc-----cc---cccEEEecCCcCCccccchhhhh
Confidence 457999999999999999999999985 57899999987540 1111 34 8999999986321
Q ss_pred ------h----------HHHHHHHhhccc-CCeEEEE
Q 044253 79 ------Y----------RNYRETLMTLFK-VGGIVIY 98 (139)
Q Consensus 79 ------~----------~~~~~~~~~lL~-~gG~ii~ 98 (139)
+ ..++..+..+|+ +||++.+
T Consensus 320 d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~ 356 (542)
T 3lkd_A 320 DPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI 356 (542)
T ss_dssp STTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred hhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence 1 126778889999 9999743
No 262
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=97.53 E-value=9.7e-05 Score=55.41 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=41.1
Q ss_pred cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----------------hHHHHHHHhhcccCCeEEEEe
Q 044253 39 KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----------------YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 39 ~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----------------~~~~~~~~~~lL~~gG~ii~~ 99 (139)
..+++++|+.+.++.+. .+ +||+||+||+... ...+++.+.++|++||.+++.
T Consensus 4 ~~~l~~gD~~~~l~~l~-----~~---~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 4 INKIHQMNCFDFLDQVE-----NK---SVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSSEEECCHHHHHHHSC-----TT---CEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCeEEechHHHHHHhcc-----cc---ccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45789999999988763 35 8999999997531 134566677899999999875
No 263
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=97.52 E-value=7.2e-05 Score=56.41 Aligned_cols=84 Identities=12% Similarity=0.019 Sum_probs=63.3
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--- 78 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--- 78 (139)
||++++. ...+++++|+|+.+++.+++++..+|. +.++..+|..... . .+ +||+|++--..+.
T Consensus 118 pLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~--~------~~---~~DvvLllk~lh~LE~ 183 (253)
T 3frh_A 118 PLALYER-GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAP--P------AE---AGDLALIFKLLPLLER 183 (253)
T ss_dssp HHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSC--C------CC---BCSEEEEESCHHHHHH
T ss_pred HHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCC--C------CC---CcchHHHHHHHHHhhh
Confidence 6788877 788999999999999999999998884 5899999987542 2 35 8999987521111
Q ss_pred --hHHHHHHHhhcccCCeEEEEeC
Q 044253 79 --YRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 79 --~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
-...+ .+++.|+++|++|.-.
T Consensus 184 q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 184 EQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hchhhHH-HHHHHhcCCCEEEEcC
Confidence 11223 5667999999998644
No 264
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=97.45 E-value=0.00019 Score=55.61 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=42.3
Q ss_pred CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----------------hHHHHHHHhhcccCCeEEEEe
Q 044253 38 LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----------------YRNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 38 ~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----------------~~~~~~~~~~lL~~gG~ii~~ 99 (139)
++.++++||+.+.++.+. ++ +||+||+||+... ....+..+.++|++||.+++.
T Consensus 13 ~~~~ii~gD~~~~l~~l~-----~~---svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFP-----EE---SISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp SSEEEEESCHHHHGGGSC-----SS---CEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCC-----CC---CeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence 568999999999876553 45 8999999997531 234566777899999999874
No 265
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=97.42 E-value=0.00022 Score=50.50 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=47.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH-------------------HhhHHhhhcccCCCceeEEE
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL-------------------DQLLKDEKIHFFFENFDYAF 71 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l-------------------~~~~~~~~~~~~~~~fD~If 71 (139)
..+|+++|+|+.. .. ++++++++|+.+.. ..+..... +. +||+|+
T Consensus 48 ~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~---~fD~v~ 111 (201)
T 2plw_A 48 KNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQ-DK---KIDIIL 111 (201)
T ss_dssp CEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHT-TC---CEEEEE
T ss_pred CceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccccccchhhHHHHHhhcC-CC---cccEEE
Confidence 4789999999942 22 46899999986531 01000000 35 899999
Q ss_pred EcCCCcc-------h-------HHHHHHHhhcccCCeEEEEe
Q 044253 72 VDAHKDN-------Y-------RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 72 ~D~~~~~-------~-------~~~~~~~~~lL~~gG~ii~~ 99 (139)
+++.... . ...+..+.++|+|||.+++.
T Consensus 112 ~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 153 (201)
T 2plw_A 112 SDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK 153 (201)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 9864221 1 12566788999999999974
No 266
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=97.41 E-value=0.00015 Score=55.77 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=49.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEE-EeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc------------
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINL-MESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD------------ 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~-~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~------------ 77 (139)
..+|+++|+|+. + +++++ +++|+.+. . . .. +||+|++|....
T Consensus 92 ~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~-~-~------~~---~fD~Vvsn~~~~~~g~~~~d~~~~ 146 (290)
T 2xyq_A 92 GTLLVDSDLNDF-------------V-SDADSTLIGDCATV-H-T------AN---KWDLIISDMYDPRTKHVTKENDSK 146 (290)
T ss_dssp TCEEEEEESSCC-------------B-CSSSEEEESCGGGC-C-C------SS---CEEEEEECCCCCC---CCSCCCCC
T ss_pred CCEEEEEECCCC-------------C-CCCEEEEECccccC-C-c------cC---cccEEEEcCCccccccccccccch
Confidence 468999999998 1 35788 99999764 1 1 25 899999985311
Q ss_pred --chHHHHHHHhhcccCCeEEEEeC
Q 044253 78 --NYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 78 --~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
.+...++.+.+.|+|||++++..
T Consensus 147 ~~l~~~~l~~a~r~LkpGG~~v~~~ 171 (290)
T 2xyq_A 147 EGFFTYLCGFIKQKLALGGSIAVKI 171 (290)
T ss_dssp CTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 13467888889999999999853
No 267
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=97.39 E-value=0.00029 Score=54.67 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=41.9
Q ss_pred CcEEEE-eCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----------h----HHHHHHHhhcccCCeEEEEe
Q 044253 38 LKINLM-ESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----------Y----RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 38 ~~i~~~-~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----------~----~~~~~~~~~lL~~gG~ii~~ 99 (139)
...+++ +||+.+.++.+. ++ +||+||+||++.. | ...+..+.++|++||.+++.
T Consensus 37 ~~~~l~i~gD~l~~L~~l~-----~~---svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~ 105 (319)
T 1eg2_A 37 TTRHVYDVCDCLDTLAKLP-----DD---SVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 105 (319)
T ss_dssp CEEEEEEECCHHHHHHTSC-----TT---CEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccceEEECCcHHHHHHhCc-----cC---CcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 357888 999999988763 45 8999999998632 2 34456667899999999885
No 268
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=97.36 E-value=0.00034 Score=53.80 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=46.5
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
..+..+.+|++||+|+++++.+++++.. . ++++++++|+.+. .+. .. +||.|+.+.+..
T Consensus 67 ~La~~~~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD~l~~--~~~-----~~---~fD~Iv~NlPy~ 125 (295)
T 3gru_A 67 ELAKNAKKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGDALKV--DLN-----KL---DFNKVVANLPYQ 125 (295)
T ss_dssp HHHHHSSEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESCTTTS--CGG-----GS---CCSEEEEECCGG
T ss_pred HHHhcCCEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECchhhC--Ccc-----cC---CccEEEEeCccc
Confidence 3444567999999999999999999873 2 4799999999875 121 34 799999998754
No 269
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=97.28 E-value=0.00037 Score=53.16 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=40.4
Q ss_pred CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----------------h-------HHHHHHHhhcccCCe
Q 044253 38 LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----------------Y-------RNYRETLMTLFKVGG 94 (139)
Q Consensus 38 ~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----------------~-------~~~~~~~~~lL~~gG 94 (139)
.++++++||+.+.++.+. ++ +||+|++||++.. + ..++..+.++|++||
T Consensus 20 ~~~~i~~gD~~~~l~~l~-----~~---s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G 91 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFP-----EA---SVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGG 91 (297)
T ss_dssp -CEEEEESCHHHHHTTSC-----TT---CEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred cCCEEEECcHHHHHhhCC-----CC---ceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCc
Confidence 468999999999876653 35 8999999997531 1 224556778999999
Q ss_pred EEEEe
Q 044253 95 IVIYD 99 (139)
Q Consensus 95 ~ii~~ 99 (139)
.+++.
T Consensus 92 ~l~i~ 96 (297)
T 2zig_A 92 RLVIV 96 (297)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 270
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=97.21 E-value=0.00068 Score=47.60 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=48.1
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEE-eCChHHHHH--hhHHhhhcccCCCceeEEEEcCCCc-------ch--
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLM-ESRALPALD--QLLKDEKIHFFFENFDYAFVDAHKD-------NY-- 79 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~-~~da~~~l~--~~~~~~~~~~~~~~fD~If~D~~~~-------~~-- 79 (139)
.+|+++|+|+.+ +. .+++++ ++|+..... .+....+ +. +||+|+++.... +.
T Consensus 56 ~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~~~~~~~-~~---~fD~V~~~~~~~~~~~~~~~~~~ 119 (196)
T 2nyu_A 56 GFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQRILEVLP-GR---RADVILSDMAPNATGFRDLDHDR 119 (196)
T ss_dssp CEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHHHHHHSG-GG---CEEEEEECCCCCCCSCHHHHHHH
T ss_pred ceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHHHHHhcC-CC---CCcEEEeCCCCCCCCCcccCHHH
Confidence 689999999952 22 468899 998754311 1100000 35 799999976321 11
Q ss_pred -----HHHHHHHhhcccCCeEEEEeC
Q 044253 80 -----RNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 80 -----~~~~~~~~~lL~~gG~ii~~~ 100 (139)
...++.+.++|+|||++++..
T Consensus 120 ~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 120 LISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 356778889999999999864
No 271
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=97.21 E-value=0.00032 Score=54.78 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=59.7
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRN 81 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~ 81 (139)
.+....+++..|. |++++.|++++...+ .+|++++.+|+++. . .. .+|+|++--...+ -..
T Consensus 199 ~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~--~-------~~---~~D~~~~~~vlh~~~d~~~~~ 264 (353)
T 4a6d_A 199 SLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKD--P-------LP---EADLYILARVLHDWADGKCSH 264 (353)
T ss_dssp HHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS--C-------CC---CCSEEEEESSGGGSCHHHHHH
T ss_pred HhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccC--C-------CC---CceEEEeeeecccCCHHHHHH
Confidence 3334567888887 889999999887555 57999999998652 1 24 6899998543222 245
Q ss_pred HHHHHhhcccCCeEEEEeCCCC
Q 044253 82 YRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
+++.+.+.|+|||.+++-+...
T Consensus 265 iL~~~~~al~pgg~lli~e~~~ 286 (353)
T 4a6d_A 265 LLERIYHTCKPGGGILVIESLL 286 (353)
T ss_dssp HHHHHHHHCCTTCEEEEEECCC
T ss_pred HHHHHHhhCCCCCEEEEEEeee
Confidence 6888889999999988766544
No 272
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=97.12 E-value=0.00019 Score=55.74 Aligned_cols=79 Identities=13% Similarity=-0.010 Sum_probs=55.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRE 84 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~ 84 (139)
...+++++|+ +.++. ++++...+..++++++.+|+.+ . .. +||+|++.....+ ...+++
T Consensus 207 p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~---~-------~p---~~D~v~~~~vlh~~~d~~~~~~L~ 270 (348)
T 3lst_A 207 PGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR---E-------VP---HADVHVLKRILHNWGDEDSVRILT 270 (348)
T ss_dssp TTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT---C-------CC---CCSEEEEESCGGGSCHHHHHHHHH
T ss_pred CCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC---C-------CC---CCcEEEEehhccCCCHHHHHHHHH
Confidence 4567899999 44444 4444455666789999999962 1 13 7999998653221 246788
Q ss_pred HHhhcccCCeEEEEeCCCCC
Q 044253 85 TLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~~~~~ 104 (139)
.+.+.|+|||.+++.+....
T Consensus 271 ~~~~~LkpgG~l~i~e~~~~ 290 (348)
T 3lst_A 271 NCRRVMPAHGRVLVIDAVVP 290 (348)
T ss_dssp HHHHTCCTTCEEEEEECCBC
T ss_pred HHHHhcCCCCEEEEEEeccC
Confidence 89999999999988766543
No 273
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.09 E-value=0.00075 Score=58.54 Aligned_cols=78 Identities=10% Similarity=-0.078 Sum_probs=53.3
Q ss_pred cceeEEeCCccHHHHH--HHHHHHcCCC---CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--------
Q 044253 12 YFIVAIDVSRESSETG--LPIIKKVEVD---LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-------- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~A--r~n~~~~g~~---~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-------- 78 (139)
.+++++|+++.+++.| +.|+..+++. +...+...|.... .... .. +||+|+.+|+...
T Consensus 349 ~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~-~~~~-----~~---kFDVVIgNPPYg~~~~~~~e~ 419 (878)
T 3s1s_A 349 RQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL-NPED-----FA---NVSVVVMNPPYVSGVTDPAIK 419 (878)
T ss_dssp GGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC-CGGG-----GT---TEEEEEECCBCCSSCCCHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc-cccc-----cC---CCCEEEECCCccccccchhhh
Confidence 5799999999999999 7776553321 2246667776652 1111 35 8999999997521
Q ss_pred ------------------------hHHHHHHHhhcccCCeEEEE
Q 044253 79 ------------------------YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 79 ------------------------~~~~~~~~~~lL~~gG~ii~ 98 (139)
+..+++.+..+|++||.+.+
T Consensus 420 kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf 463 (878)
T 3s1s_A 420 RKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA 463 (878)
T ss_dssp HHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred hhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence 22356677789999999764
No 274
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=97.07 E-value=0.00032 Score=50.19 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=48.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--CcchHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--KDNYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--~~~~~~~~~~~~~l 89 (139)
.+++++|+|+. +++++++|+.+. + +. .+ +||+|++... ..+...+++.+.++
T Consensus 87 ~~v~~~D~s~~----------------~~~~~~~d~~~~-~-~~-----~~---~fD~v~~~~~l~~~~~~~~l~~~~~~ 140 (215)
T 2zfu_A 87 NPVHCFDLASL----------------DPRVTVCDMAQV-P-LE-----DE---SVDVAVFCLSLMGTNIRDFLEEANRV 140 (215)
T ss_dssp SCEEEEESSCS----------------STTEEESCTTSC-S-CC-----TT---CEEEEEEESCCCSSCHHHHHHHHHHH
T ss_pred ccEEEEeCCCC----------------CceEEEeccccC-C-CC-----CC---CEeEEEEehhccccCHHHHHHHHHHh
Confidence 58999999998 467888888763 2 11 35 8999998653 23557788999999
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+|||.+++.+
T Consensus 141 L~~gG~l~i~~ 151 (215)
T 2zfu_A 141 LKPGGLLKVAE 151 (215)
T ss_dssp EEEEEEEEEEE
T ss_pred CCCCeEEEEEE
Confidence 99999999864
No 275
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.02 E-value=0.00072 Score=50.80 Aligned_cols=61 Identities=7% Similarity=-0.047 Sum_probs=45.3
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
...+..+.+|++||+|+++++.+++++.. .++++++++|+.+. ++.+.. .. +|| |+.+.++
T Consensus 45 ~~La~~~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~----~~---~~~-vv~NlPY 106 (255)
T 3tqs_A 45 DYLLTECDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKT----DK---PLR-VVGNLPY 106 (255)
T ss_dssp HHHTTTSSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSCC----SS---CEE-EEEECCH
T ss_pred HHHHHhCCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhcc----CC---CeE-EEecCCc
Confidence 34455567999999999999999999865 35799999999876 222110 14 688 8888765
No 276
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.84 E-value=0.0013 Score=48.65 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=42.7
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
...+..+.+|+++|+|+++++.+++++... ++++++++|+.+.- +.. .. .| .|+.++++
T Consensus 46 ~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~--~~~----~~---~~-~vv~nlPy 104 (244)
T 1qam_A 46 LELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFK--FPK----NQ---SY-KIFGNIPY 104 (244)
T ss_dssp HHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCC--CCS----SC---CC-EEEEECCG
T ss_pred HHHHHcCCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCC--ccc----CC---Ce-EEEEeCCc
Confidence 344455679999999999999999988642 57999999998751 110 13 46 57777765
No 277
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=96.82 E-value=0.0014 Score=49.70 Aligned_cols=68 Identities=10% Similarity=-0.150 Sum_probs=49.1
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~ 85 (139)
..+..+.+|+++|+|+++++.+++++. + ++++++++|+.+.- +.. .. .+|.|+.+.++.--..++..
T Consensus 63 ~L~~~~~~V~avEid~~~~~~l~~~~~--~--~~v~vi~~D~l~~~--~~~----~~---~~~~iv~NlPy~iss~il~~ 129 (271)
T 3fut_A 63 ALLEAGAEVTAIEKDLRLRPVLEETLS--G--LPVRLVFQDALLYP--WEE----VP---QGSLLVANLPYHIATPLVTR 129 (271)
T ss_dssp HHHHTTCCEEEEESCGGGHHHHHHHTT--T--SSEEEEESCGGGSC--GGG----SC---TTEEEEEEECSSCCHHHHHH
T ss_pred HHHHcCCEEEEEECCHHHHHHHHHhcC--C--CCEEEEECChhhCC--hhh----cc---CccEEEecCcccccHHHHHH
Confidence 445556899999999999999999875 2 57999999998761 110 13 68999999876443444333
Q ss_pred H
Q 044253 86 L 86 (139)
Q Consensus 86 ~ 86 (139)
+
T Consensus 130 l 130 (271)
T 3fut_A 130 L 130 (271)
T ss_dssp H
T ss_pred H
Confidence 3
No 278
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=96.75 E-value=8.4e-05 Score=56.57 Aligned_cols=75 Identities=5% Similarity=-0.015 Sum_probs=49.1
Q ss_pred cceeEEeCCccHHHHHHHHH-HHcCCCCcEEEE--eCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--ch----H--
Q 044253 12 YFIVAIDVSRESSETGLPII-KKVEVDLKINLM--ESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NY----R-- 80 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~-~~~g~~~~i~~~--~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~----~-- 80 (139)
.+|++||+++ ++..++++. .......+++++ ++|+..+ + .+ +||+|++|.... .+ .
T Consensus 104 ~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~~---~fD~Vvsd~~~~~~~~~~d~~~~ 170 (276)
T 2wa2_A 104 PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-E--------PF---QADTVLCDIGESNPTAAVEASRT 170 (276)
T ss_dssp TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-C--------CC---CCSEEEECCCCCCSCHHHHHHHH
T ss_pred CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-C--------CC---CcCEEEECCCcCCCchhhhHHHH
Confidence 6899999999 543333211 001111268999 9998763 1 35 899999996411 11 1
Q ss_pred -HHHHHHhhcccCCe--EEEEe
Q 044253 81 -NYRETLMTLFKVGG--IVIYD 99 (139)
Q Consensus 81 -~~~~~~~~lL~~gG--~ii~~ 99 (139)
..++.+.+.|+||| .+++.
T Consensus 171 l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 171 LTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEE
T ss_pred HHHHHHHHHHhccCCCcEEEEE
Confidence 25777778999999 88874
No 279
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=96.71 E-value=4.3e-05 Score=56.61 Aligned_cols=82 Identities=5% Similarity=-0.014 Sum_probs=57.3
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch----
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY---- 79 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~---- 79 (139)
....+..+.+|+++|+|+++++.|++++. + .++++++++|+.+.- +.. .+ +| .|+.+++....
T Consensus 44 ~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~~--~~~----~~---~f-~vv~n~Py~~~~~~~ 110 (245)
T 1yub_A 44 TTKLAKISKQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQFQ--FPN----KQ---RY-KIVGNIPYHLSTQII 110 (245)
T ss_dssp SHHHHHHSSEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTTT--CCC----SS---EE-EEEEECCSSSCHHHH
T ss_pred HHHHHHhCCeEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhcC--ccc----CC---Cc-EEEEeCCccccHHHH
Confidence 44555566899999999999999998875 2 368999999998751 110 14 78 78888764321
Q ss_pred HHH----------H----HHHhhcccCCeEEEE
Q 044253 80 RNY----------R----ETLMTLFKVGGIVIY 98 (139)
Q Consensus 80 ~~~----------~----~~~~~lL~~gG~ii~ 98 (139)
..+ + +.+.++|++||.+.+
T Consensus 111 ~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 111 KKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp HHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred HHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 111 2 456789999998744
No 280
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.64 E-value=0.0023 Score=49.03 Aligned_cols=58 Identities=9% Similarity=-0.016 Sum_probs=44.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN 78 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~ 78 (139)
+.+|+++|.|+++++.|++ ++. +++++++++...+-..+. +.+ .. ++|.|++|.+...
T Consensus 44 ~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~-~~g-~~---~vDgIL~DLGvSS 101 (285)
T 1wg8_A 44 GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLA-ALG-VE---RVDGILADLGVSS 101 (285)
T ss_dssp TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHH-HTT-CS---CEEEEEEECSCCH
T ss_pred CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHH-HcC-CC---CcCEEEeCCcccc
Confidence 6799999999999999998 643 589999999987633222 111 24 7999999986543
No 281
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=96.46 E-value=0.0016 Score=50.97 Aligned_cols=74 Identities=8% Similarity=0.032 Sum_probs=54.4
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRE 84 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~ 84 (139)
...+++++|+ +++++.|+++ ++++++.+|+.+. + .. . |+|++.....+ ...+++
T Consensus 226 p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~------p~---~-D~v~~~~vlh~~~~~~~~~~l~ 284 (368)
T 3reo_A 226 PSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDG---V------PK---G-DAIFIKWICHDWSDEHCLKLLK 284 (368)
T ss_dssp TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C------CC---C-SEEEEESCGGGBCHHHHHHHHH
T ss_pred CCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCC---C------CC---C-CEEEEechhhcCCHHHHHHHHH
Confidence 4568999999 8888777642 5799999998752 2 24 5 99998653322 235788
Q ss_pred HHhhcccCCeEEEEeCCCCC
Q 044253 85 TLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~~~~~ 104 (139)
.+.+.|+|||.+++.+....
T Consensus 285 ~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 285 NCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp HHHHHSCTTCEEEEEECCCC
T ss_pred HHHHHcCCCCEEEEEEeccC
Confidence 89999999999988766553
No 282
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=96.45 E-value=0.0014 Score=51.21 Aligned_cols=74 Identities=7% Similarity=-0.034 Sum_probs=54.5
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc-----hHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN-----YRNYRE 84 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~-----~~~~~~ 84 (139)
...+++++|+ +++++.|++ .++++++.+|+.+. + .. . |+|++.....+ ...+++
T Consensus 224 p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~---~------p~---~-D~v~~~~vlh~~~d~~~~~~L~ 282 (364)
T 3p9c_A 224 PTIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFKE---V------PS---G-DTILMKWILHDWSDQHCATLLK 282 (364)
T ss_dssp TTCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTC---C------CC---C-SEEEEESCGGGSCHHHHHHHHH
T ss_pred CCCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCCC---C------CC---C-CEEEehHHhccCCHHHHHHHHH
Confidence 4568999999 888877764 25899999998752 2 24 5 99998653322 346788
Q ss_pred HHhhcccCCeEEEEeCCCCC
Q 044253 85 TLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 85 ~~~~lL~~gG~ii~~~~~~~ 104 (139)
.+.+.|+|||.+++.+....
T Consensus 283 ~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 283 NCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp HHHHHSCTTCEEEEEECCBC
T ss_pred HHHHHcCCCCEEEEEEeccC
Confidence 88899999999988766553
No 283
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=96.31 E-value=0.00041 Score=53.39 Aligned_cols=73 Identities=7% Similarity=-0.090 Sum_probs=47.3
Q ss_pred cceeEEeC----CccHHHHHHHHHHHcCCCCcEEEEeC-ChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--ch----H
Q 044253 12 YFIVAIDV----SRESSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NY----R 80 (139)
Q Consensus 12 ~~v~~vD~----s~~~~~~Ar~n~~~~g~~~~i~~~~~-da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~----~ 80 (139)
.+|++||+ ++.+++.++ .+..+ .++++++++ |+... + .. +||+|++|.... .+ .
T Consensus 104 ~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l-~--------~~---~fD~V~sd~~~~~g~~~~d~~ 168 (305)
T 2p41_A 104 KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI-P--------PE---RCDTLLCDIGESSPNPTVEAG 168 (305)
T ss_dssp TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS-C--------CC---CCSEEEECCCCCCSSHHHHHH
T ss_pred CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC-C--------cC---CCCEEEECCccccCcchhhHH
Confidence 57999999 554332111 11112 257999999 88653 1 35 899999997531 11 1
Q ss_pred ---HHHHHHhhcccCCeEEEEe
Q 044253 81 ---NYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 81 ---~~~~~~~~lL~~gG~ii~~ 99 (139)
..+..+.+.|+|||.+++.
T Consensus 169 ~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 169 RTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEE
Confidence 3566677899999999984
No 284
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=96.30 E-value=0.00093 Score=52.20 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=53.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---hH--HHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN---YR--NYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~---~~--~~~~~ 85 (139)
..+++++|+ +.+++.|++ . ++++++.+|+.+. + . .||+|++.....+ .. .+++.
T Consensus 233 ~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~---~-------~---~~D~v~~~~~lh~~~d~~~~~~l~~ 291 (372)
T 1fp1_D 233 LIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFAS---V-------P---QGDAMILKAVCHNWSDEKCIEFLSN 291 (372)
T ss_dssp TCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTTC---C-------C---CEEEEEEESSGGGSCHHHHHHHHHH
T ss_pred CCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCcccC---C-------C---CCCEEEEecccccCCHHHHHHHHHH
Confidence 457888899 899888764 2 4699999998751 2 3 5999998653222 22 67888
Q ss_pred HhhcccCCeEEEEeCCCC
Q 044253 86 LMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~~~ 103 (139)
+.+.|+|||.+++.+...
T Consensus 292 ~~~~L~pgG~l~i~e~~~ 309 (372)
T 1fp1_D 292 CHKALSPNGKVIIVEFIL 309 (372)
T ss_dssp HHHHEEEEEEEEEEEEEE
T ss_pred HHHhcCCCCEEEEEEecc
Confidence 999999999998865544
No 285
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=96.20 E-value=0.00025 Score=53.53 Aligned_cols=76 Identities=8% Similarity=-0.044 Sum_probs=48.8
Q ss_pred cceeEEeCCccHHHHHHHHH-HHcCCCCcEEEE--eCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--cch----H--
Q 044253 12 YFIVAIDVSRESSETGLPII-KKVEVDLKINLM--ESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--DNY----R-- 80 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~-~~~g~~~~i~~~--~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~~~----~-- 80 (139)
.+|++||+++ ++..+++.- .......+++++ ++|+.++ + .. +||+|++|... ..+ .
T Consensus 96 ~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~~---~fD~V~sd~~~~~~~~~~d~~~~ 162 (265)
T 2oxt_A 96 PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL-P--------VE---RTDVIMCDVGESSPKWSVESERT 162 (265)
T ss_dssp TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-C--------CC---CCSEEEECCCCCCSCHHHHHHHH
T ss_pred CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC-C--------CC---CCcEEEEeCcccCCccchhHHHH
Confidence 7899999999 433332210 001111268999 8999863 1 35 89999998641 111 1
Q ss_pred -HHHHHHhhcccCCe--EEEEeC
Q 044253 81 -NYRETLMTLFKVGG--IVIYDN 100 (139)
Q Consensus 81 -~~~~~~~~lL~~gG--~ii~~~ 100 (139)
..++.+.+.|+||| .+++..
T Consensus 163 l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 163 IKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEEe
Confidence 25677778999999 988843
No 286
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=96.11 E-value=0.002 Score=49.87 Aligned_cols=72 Identities=8% Similarity=-0.021 Sum_probs=54.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chH--HHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYR--NYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~--~~~~~ 85 (139)
..+++++|+ +.+++.|++ . .+++++.+|+.+ .+ . .||+|++..... +.. .+++.
T Consensus 212 ~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~---~~-------p---~~D~v~~~~~lh~~~d~~~~~~l~~ 270 (352)
T 1fp2_A 212 KLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFT---SI-------P---NADAVLLKYILHNWTDKDCLRILKK 270 (352)
T ss_dssp TCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTT---CC-------C---CCSEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCeEEEeeC-HHHHhhccc------C-CCcEEEeccccC---CC-------C---CccEEEeehhhccCCHHHHHHHHHH
Confidence 568999999 999988875 1 359999999865 12 3 699999865322 222 67888
Q ss_pred HhhcccC---CeEEEEeCCCC
Q 044253 86 LMTLFKV---GGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~---gG~ii~~~~~~ 103 (139)
+.+.|+| ||++++.+...
T Consensus 271 ~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 271 CKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp HHHHHSGGGCCCEEEEEECEE
T ss_pred HHHhCCCCCCCcEEEEEEeec
Confidence 9999999 99988766544
No 287
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=96.02 E-value=0.0048 Score=52.06 Aligned_cols=82 Identities=10% Similarity=0.035 Sum_probs=56.6
Q ss_pred cceeEEeCCccHHHHHHHHH--------------HHc-----C-----CCC---cEEEEeCChHHHHHhhHHhhhcccCC
Q 044253 12 YFIVAIDVSRESSETGLPII--------------KKV-----E-----VDL---KINLMESRALPALDQLLKDEKIHFFF 64 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~--------------~~~-----g-----~~~---~i~~~~~da~~~l~~~~~~~~~~~~~ 64 (139)
.+++++|..|-..+.+++.+ ... | +.+ .++++.||+.+.++++.... ..
T Consensus 95 l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~--~~-- 170 (689)
T 3pvc_A 95 LHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDSL--NN-- 170 (689)
T ss_dssp EEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGGG--TT--
T ss_pred EEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhccccc--CC--
Confidence 57899999776666555432 222 1 111 57889999999988752100 24
Q ss_pred CceeEEEEcCCCcc------hHHHHHHHhhcccCCeEEEE
Q 044253 65 ENFDYAFVDAHKDN------YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 65 ~~fD~If~D~~~~~------~~~~~~~~~~lL~~gG~ii~ 98 (139)
.+|.+|+|+-... -..++..+.+++++||.+..
T Consensus 171 -~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 171 -QVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp -CEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred -ceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 7999999984322 26788999999999999875
No 288
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=95.86 E-value=0.0094 Score=46.13 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=40.5
Q ss_pred EEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcC--CCcc----hHHHHHHHhhcccCCeEEEE
Q 044253 40 INLMESRALPALDQLLKDEKIHFFFENFDYAFVDA--HKDN----YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 40 i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~--~~~~----~~~~~~~~~~lL~~gG~ii~ 98 (139)
.++..||+.+.++++. .. +||+||+|+ +..+ -..++..+.++++|||+++-
T Consensus 168 L~l~~GDa~~~l~~l~-----~~---~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVE-----NF---KADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp EEEEESCHHHHGGGCC-----SC---CEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEechHHHHHhhhc-----cc---ceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 5678999999988763 34 799999997 3322 25789999999999999974
No 289
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.23 E-value=0.027 Score=46.45 Aligned_cols=57 Identities=5% Similarity=-0.171 Sum_probs=43.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHH-HhhHHhhhcccCCCceeEEEEcCCC
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPAL-DQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l-~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
..++++|+++.+...|+-|+-..|.. ...+.++|.+..- .... +.. +||+|+.+||.
T Consensus 255 ~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I~~~dtL~~~~~~~~----~~~---~fD~Il~NPPf 312 (530)
T 3ufb_A 255 SSIFGGEAKSLPYLLVQMNLLLHGLE-YPRIDPENSLRFPLREMG----DKD---RVDVILTNPPF 312 (530)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHTCS-CCEEECSCTTCSCGGGCC----GGG---CBSEEEECCCS
T ss_pred hhhhhhhccHHHHHHHHHHHHhcCCc-cccccccccccCchhhhc----ccc---cceEEEecCCC
Confidence 46899999999999999999988884 4678889886531 1110 024 79999999975
No 290
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=95.23 E-value=0.045 Score=41.43 Aligned_cols=41 Identities=12% Similarity=-0.019 Sum_probs=33.2
Q ss_pred hhhhhhhcc----eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH
Q 044253 5 LESTFFIYF----IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA 50 (139)
Q Consensus 5 ~~~~~~~~~----v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~ 50 (139)
...+..+.+ |++||+|+++++.++++. .++++++++|+.+.
T Consensus 58 ~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 58 GPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF 102 (279)
T ss_dssp HHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred HHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence 344444555 999999999999999983 35799999999875
No 291
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=95.09 E-value=0.0077 Score=46.62 Aligned_cols=72 Identities=8% Similarity=-0.046 Sum_probs=52.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---c--hHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---N--YRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~--~~~~~~~ 85 (139)
..+++++|+ +.+++.|++ . .+++++.+|+.+ .+ . +||+|++..... + ...+++.
T Consensus 217 ~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~---~~-------~---~~D~v~~~~vlh~~~d~~~~~~l~~ 275 (358)
T 1zg3_A 217 HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK---SI-------P---SADAVLLKWVLHDWNDEQSLKILKN 275 (358)
T ss_dssp TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT---CC-------C---CCSEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC---CC-------C---CceEEEEcccccCCCHHHHHHHHHH
Confidence 457899999 788877764 2 359999999875 22 4 699999865322 2 2367888
Q ss_pred HhhcccC---CeEEEEeCCCC
Q 044253 86 LMTLFKV---GGIVIYDNTLW 103 (139)
Q Consensus 86 ~~~lL~~---gG~ii~~~~~~ 103 (139)
+.+.|+| ||.+++.+...
T Consensus 276 ~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 276 SKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp HHHHTGGGGGGCEEEEEECEE
T ss_pred HHHhCCCCCCCcEEEEEEecc
Confidence 8899999 99988765544
No 292
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=95.03 E-value=0.022 Score=42.38 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=43.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
..+|++||+|+.+++.++++ + ..+++++++|+.+. ++.. .. .| .|+.+.++.-....+..++
T Consensus 54 ~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~~~~------~~---~~-~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 54 LKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPFCSL------GK---EL-KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp CSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCGGGS------CS---SE-EEEEECCTTTHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCChhHc------cC---Cc-EEEEECchhccHHHHHHHH
Confidence 37899999999999999987 2 25799999999875 1111 12 34 7888887654444444444
No 293
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=94.94 E-value=0.046 Score=40.71 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=42.0
Q ss_pred hcc--eeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH-HHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 11 IYF--IVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA-LDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 11 ~~~--v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~-l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
+.+ |+++|+|+++++.+++++... ++++++++|+.+. ++..... .. ..|.|+.+.++.
T Consensus 41 ~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~~---~~---~~~~vvsNlPY~ 101 (252)
T 1qyr_A 41 ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEK---MG---QPLRVFGNLPYN 101 (252)
T ss_dssp TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHH---HT---SCEEEEEECCTT
T ss_pred CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhcc---cC---CceEEEECCCCC
Confidence 456 999999999999999887542 4799999999874 2322100 02 467888888754
No 294
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=94.37 E-value=0.35 Score=30.97 Aligned_cols=79 Identities=11% Similarity=-0.060 Sum_probs=54.4
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chHHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYRNYRETL 86 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~~~~~~~ 86 (139)
...+|..+|-++......+..++..|+ .+.....+..+.+..+. .. .+|+|++|.... ...++++.+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~---~~dlii~d~~~~~~~~g~~~~~~l 77 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGY--DVLGVFDNGEEAVRCAP-----DL---RPDIALVDIMLCGALDGVETAARL 77 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHH-----HH---CCSEEEEESSCCSSSCHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCC--eeEEEECCHHHHHHHHH-----hC---CCCEEEEecCCCCCCCHHHHHHHH
Confidence 456899999999999999999998876 34445777877776553 34 799999996432 334556666
Q ss_pred hhcccCCeEEEEe
Q 044253 87 MTLFKVGGIVIYD 99 (139)
Q Consensus 87 ~~lL~~gG~ii~~ 99 (139)
... ..-.++++.
T Consensus 78 ~~~-~~~~ii~ls 89 (140)
T 3cg0_A 78 AAG-CNLPIIFIT 89 (140)
T ss_dssp HHH-SCCCEEEEE
T ss_pred HhC-CCCCEEEEe
Confidence 554 333444443
No 295
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=94.18 E-value=0.44 Score=32.67 Aligned_cols=79 Identities=14% Similarity=0.008 Sum_probs=53.2
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHH
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETL 86 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~ 86 (139)
....+|..||-++......+..++..|+ .+ ....+..+.+..+. .. .+|+|++|...+ +-.++++.+
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~~~-----~~---~~dlvl~D~~lp~~~g~~~~~~l 73 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGY--AV-RQAHNKDEALKLAG-----AE---KFEFITVXLHLGNDSGLSLIAPL 73 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEECSHHHHHHHHT-----TS---CCSEEEECSEETTEESHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCC--EE-EEeCCHHHHHHHHh-----hC---CCCEEEEeccCCCccHHHHHHHH
Confidence 4456899999999999999999998886 24 56678888876653 35 799999996322 334455555
Q ss_pred hhcccCCeEEEE
Q 044253 87 MTLFKVGGIVIY 98 (139)
Q Consensus 87 ~~lL~~gG~ii~ 98 (139)
...-..--++++
T Consensus 74 ~~~~~~~~ii~l 85 (184)
T 3rqi_A 74 CDLQPDARILVL 85 (184)
T ss_dssp HHHCTTCEEEEE
T ss_pred HhcCCCCCEEEE
Confidence 543222334444
No 296
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=94.16 E-value=0.63 Score=29.45 Aligned_cols=78 Identities=12% Similarity=0.011 Sum_probs=52.4
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
...+|..+|-++......++.++..|+. +. ...+..+.+..+. .. ++|+|++|.... ....+++.+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~a~~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~ 74 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGAT--TV-LAADGVDALELLG-----GF---TPDLMICDIAMPRMNGLKLLEHIR 74 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESCHHHHHHHHT-----TC---CCSEEEECCC-----CHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCce--EE-EeCCHHHHHHHHh-----cC---CCCEEEEecCCCCCCHHHHHHHHH
Confidence 4568999999999999999999998862 33 4678888776653 35 799999997432 2344555555
Q ss_pred hcccCCeEEEE
Q 044253 88 TLFKVGGIVIY 98 (139)
Q Consensus 88 ~lL~~gG~ii~ 98 (139)
..-..--++++
T Consensus 75 ~~~~~~~ii~~ 85 (130)
T 3eod_A 75 NRGDQTPVLVI 85 (130)
T ss_dssp HTTCCCCEEEE
T ss_pred hcCCCCCEEEE
Confidence 43322334444
No 297
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=93.98 E-value=0.67 Score=29.18 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=49.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..+|-++......++.++..|+ .+. ...+..+.+..+. .. ++|+|++|.... ....+++.+..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlii~D~~l~~~~g~~~~~~l~~ 71 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGF--QAD-YVMSGTDALHAMS-----TR---GYDAVFIDLNLPDTSGLALVKQLRA 71 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTE--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCC--CEE-EECCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 35789999999999999999998876 233 4567777766553 35 799999997432 33455666655
Q ss_pred c
Q 044253 89 L 89 (139)
Q Consensus 89 l 89 (139)
.
T Consensus 72 ~ 72 (127)
T 3i42_A 72 L 72 (127)
T ss_dssp S
T ss_pred h
Confidence 4
No 298
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=93.98 E-value=0.75 Score=29.70 Aligned_cols=70 Identities=7% Similarity=-0.001 Sum_probs=49.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~ 87 (139)
...+|..||-++......++.++..|.. .......+..+.+..+. .. ++|+|++|..... ..++++.+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~-----~~---~~dlii~D~~l~~~~g~~~~~~lr 74 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIH-CQLEFVDNGAKALYQVQ-----QA---KYDLIILDIGLPIANGFEVMSAVR 74 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCC-EEEEEESSHHHHHHHHT-----TC---CCSEEEECTTCGGGCHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCC-eeEEEECCHHHHHHHhh-----cC---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3468999999999999999999998873 22345667777776653 35 7999999975433 344555555
Q ss_pred h
Q 044253 88 T 88 (139)
Q Consensus 88 ~ 88 (139)
.
T Consensus 75 ~ 75 (144)
T 3kht_A 75 K 75 (144)
T ss_dssp S
T ss_pred h
Confidence 4
No 299
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=93.97 E-value=0.072 Score=41.78 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=41.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
..+|+++|+|+++++.|+ ++ ..+++++++++...+...+.. .++.+++|.|++|.+.
T Consensus 82 ~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~----~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 82 EGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAE----RDLIGKIDGILLDLGV 138 (347)
T ss_dssp TCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHH----TTCTTCEEEEEEECSC
T ss_pred CCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHh----cCCCCcccEEEECCcc
Confidence 468999999999999995 33 247899999999887544321 1111169999999654
No 300
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=93.97 E-value=0.12 Score=36.16 Aligned_cols=76 Identities=12% Similarity=-0.011 Sum_probs=46.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++..+.+++ .|....+.....+..+.+.+... .. .+|+|+.... ...++.+.+.
T Consensus 62 ~G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~----~~---~~D~vi~~~g----~~~~~~~~~~ 126 (198)
T 1pqw_A 62 IGARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELTD----GY---GVDVVLNSLA----GEAIQRGVQI 126 (198)
T ss_dssp HTCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHTT----TC---CEEEEEECCC----THHHHHHHHT
T ss_pred cCCEEEEEeCCHHHHHHHHH----cCCCEEeeCCcHHHHHHHHHHhC----CC---CCeEEEECCc----hHHHHHHHHH
Confidence 46789999999988776653 45421111112233333332211 23 6999996653 2457788899
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 127 l~~~G~~v~~g 137 (198)
T 1pqw_A 127 LAPGGRFIELG 137 (198)
T ss_dssp EEEEEEEEECS
T ss_pred hccCCEEEEEc
Confidence 99999998643
No 301
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=93.95 E-value=0.73 Score=29.54 Aligned_cols=67 Identities=16% Similarity=0.029 Sum_probs=49.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..+|-++......++.++..|+. + ....+..+.+..+. .. ++|+|++|.... .-..+++.+..
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~--v-~~~~~~~~a~~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFD--S-DMVHSAAQALEQVA-----RR---PYAAMTVDLNLPDQDGVSLIRALRR 74 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCE--E-EEECSHHHHHHHHH-----HS---CCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCe--E-EEECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 457999999999999999999988863 3 45667777776653 35 899999997433 33455666554
No 302
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=93.92 E-value=0.58 Score=29.90 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=52.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-------chHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-------NYRNYR 83 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-------~~~~~~ 83 (139)
..+|..+|-++......++.++..|+ .+. ...+..+.+..+. .. .+|+|++|.... ....++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~d~~~~~~~~~~~~g~~~~ 71 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFS--KVI-TLSSPVSLSTVLR-----EE---NPEVVLLDMNFTSGINNGNEGLFWL 71 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSS--EEE-EECCHHHHHHHHH-----HS---CEEEEEEETTTTC-----CCHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCc--EEE-EeCCHHHHHHHHH-----cC---CCCEEEEeCCcCCCCCCCccHHHHH
Confidence 45789999999999999999987775 243 5667777766553 35 799999997533 334455
Q ss_pred HHHhhcccCCeEEEE
Q 044253 84 ETLMTLFKVGGIVIY 98 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~ 98 (139)
+.+......-.++++
T Consensus 72 ~~l~~~~~~~~ii~l 86 (140)
T 2qr3_A 72 HEIKRQYRDLPVVLF 86 (140)
T ss_dssp HHHHHHCTTCCEEEE
T ss_pred HHHHhhCcCCCEEEE
Confidence 655554333344444
No 303
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=93.86 E-value=0.49 Score=30.67 Aligned_cols=79 Identities=9% Similarity=0.044 Sum_probs=53.4
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
...+|..||-++......+..+...|+ .+. ...+..+.+..+. .. .+|+|++|.... ....+++.+.
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlii~d~~l~~~~g~~~~~~l~ 75 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGF--DII-QCGNAIEAVPVAV-----KT---HPHLIITEANMPKISGMDLFNSLK 75 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTE--EEE-EESSHHHHHHHHH-----HH---CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHH-----cC---CCCEEEEcCCCCCCCHHHHHHHHH
Confidence 456899999999999999999998776 344 5667777766553 34 799999997433 2344566655
Q ss_pred h--cccCCeEEEEe
Q 044253 88 T--LFKVGGIVIYD 99 (139)
Q Consensus 88 ~--lL~~gG~ii~~ 99 (139)
. ....--++++.
T Consensus 76 ~~~~~~~~pii~ls 89 (147)
T 2zay_A 76 KNPQTASIPVIALS 89 (147)
T ss_dssp TSTTTTTSCEEEEE
T ss_pred cCcccCCCCEEEEe
Confidence 4 23333445543
No 304
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=93.84 E-value=0.14 Score=39.03 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=50.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++..+.+++ .|...-+.....+..+.+.+. .. .+|.||..... ...++.+.+.
T Consensus 189 ~Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~------~g---~~d~vid~~g~---~~~~~~~~~~ 252 (340)
T 3s2e_A 189 MGLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE------IG---GAHGVLVTAVS---PKAFSQAIGM 252 (340)
T ss_dssp TTCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------HS---SEEEEEESSCC---HHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh------CC---CCCEEEEeCCC---HHHHHHHHHH
Confidence 46799999999999888765 565322222223444444432 35 79999876542 3467788899
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
|+++|.++.-..
T Consensus 253 l~~~G~iv~~G~ 264 (340)
T 3s2e_A 253 VRRGGTIALNGL 264 (340)
T ss_dssp EEEEEEEEECSC
T ss_pred hccCCEEEEeCC
Confidence 999999987543
No 305
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=93.31 E-value=0.21 Score=33.49 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=48.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~ 87 (139)
.+|..||=++......++.++..|+. ......|+.+.+..+. .. +||+|++|-..+. -.++++.+.
T Consensus 13 ~rILiVDD~~~~r~~l~~~L~~~G~~--~v~~a~~g~~al~~~~-----~~---~~DlillD~~MP~mdG~el~~~ir 80 (134)
T 3to5_A 13 MKILIVDDFSTMRRIVKNLLRDLGFN--NTQEADDGLTALPMLK-----KG---DFDFVVTDWNMPGMQGIDLLKNIR 80 (134)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESSHHHHHHHHH-----HH---CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCc--EEEEECCHHHHHHHHH-----hC---CCCEEEEcCCCCCCCHHHHHHHHH
Confidence 47999999999999999999999974 2334578888876654 35 8999999975433 334555554
No 306
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=93.29 E-value=0.32 Score=40.67 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=40.6
Q ss_pred cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC--c----chHHHHHHHhhcccCCeEEEE
Q 044253 39 KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK--D----NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 39 ~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~--~----~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.+++..||+.+.++++.... .. .||.||+|+-. . .-..++..+.+++++||++..
T Consensus 157 ~l~l~~gd~~~~l~~~~~~~--~~---~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 157 TLDLWFGDINELTSQLDDSL--NQ---KVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEESCHHHHGGGBCGGG--TT---CEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEecCCHHHHHHhccccc--CC---cccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 46688999999988762110 14 79999999732 1 135688899999999999875
No 307
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=93.26 E-value=0.85 Score=28.34 Aligned_cols=76 Identities=14% Similarity=0.035 Sum_probs=52.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~~~~~~~~~ 88 (139)
.+|..+|-++......++.++..|+ ++. ...+..+.+..+. .. .+|+|++|.... ....+++.+..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlvi~d~~~~~~~~g~~~~~~l~~ 74 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGF--TVD-ETTDGKGSVEQIR-----RD---RPDLVVLAVDLSAGQNGYLICGKLKK 74 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTC--EEE-EECCHHHHHHHHH-----HH---CCSEEEEESBCGGGCBHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCc--eEE-EecCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCCHHHHHHHHhc
Confidence 4799999999999999999998886 343 5667777766553 34 799999997543 33455666655
Q ss_pred c--ccCCeEEEE
Q 044253 89 L--FKVGGIVIY 98 (139)
Q Consensus 89 l--L~~gG~ii~ 98 (139)
. ...-.++++
T Consensus 75 ~~~~~~~~ii~~ 86 (127)
T 2gkg_A 75 DDDLKNVPIVII 86 (127)
T ss_dssp STTTTTSCEEEE
T ss_pred CccccCCCEEEE
Confidence 4 233345554
No 308
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=93.24 E-value=0.98 Score=28.93 Aligned_cols=75 Identities=12% Similarity=-0.064 Sum_probs=49.4
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
...+|..||-++......+..++..|.. .......+..+.+..+........ .+|+|++|.... .-..+++.+.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~-~~v~~~~~~~~a~~~l~~~~~~~~---~~dlvi~D~~l~~~~g~~~~~~l~ 83 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRV-EEIQSVTSGNAAINKLNELYAAGR---WPSIICIDINMPGINGWELIDLFK 83 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCE-EEEEEESSHHHHHHHHHHHHTSSC---CCSEEEEESSCSSSCHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCC-eeeeecCCHHHHHHHHHHhhccCC---CCCEEEEcCCCCCCCHHHHHHHHH
Confidence 4568999999999999999999887752 123355677777665532000015 799999997433 3344566655
Q ss_pred h
Q 044253 88 T 88 (139)
Q Consensus 88 ~ 88 (139)
.
T Consensus 84 ~ 84 (146)
T 3ilh_A 84 Q 84 (146)
T ss_dssp H
T ss_pred H
Confidence 5
No 309
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=93.23 E-value=0.81 Score=29.37 Aligned_cols=78 Identities=9% Similarity=-0.087 Sum_probs=53.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHH-cCCCCcEEEEeCChHHHHHhhHHhhhcc-cCCCceeEEEEcCCCc-c--hHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKK-VEVDLKINLMESRALPALDQLLKDEKIH-FFFENFDYAFVDAHKD-N--YRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~-~g~~~~i~~~~~da~~~l~~~~~~~~~~-~~~~~fD~If~D~~~~-~--~~~~~~~ 85 (139)
..+|..||-++......+..++. .|+ .+. ...+..+.+..+. . . .+|+|++|.... . ...+++.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~--~v~-~~~~~~~a~~~l~-----~~~---~~dlvi~D~~l~~~~~g~~~~~~ 72 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEY--DFI-EVENLKKFYSIFK-----DLD---SITLIIMDIAFPVEKEGLEVLSA 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCC--EEE-EECSHHHHHTTTT-----TCC---CCSEEEECSCSSSHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCc--cEE-EECCHHHHHHHHh-----cCC---CCcEEEEeCCCCCCCcHHHHHHH
Confidence 45799999999999999999998 776 344 6677888776553 4 5 899999998654 3 2344555
Q ss_pred Hhh--cccCCeEEEEe
Q 044253 86 LMT--LFKVGGIVIYD 99 (139)
Q Consensus 86 ~~~--lL~~gG~ii~~ 99 (139)
+.. ....--++++.
T Consensus 73 l~~~~~~~~~~ii~ls 88 (140)
T 3lua_A 73 IRNNSRTANTPVIIAT 88 (140)
T ss_dssp HHHSGGGTTCCEEEEE
T ss_pred HHhCcccCCCCEEEEe
Confidence 554 33333444443
No 310
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=93.21 E-value=0.88 Score=29.70 Aligned_cols=79 Identities=10% Similarity=-0.024 Sum_probs=53.6
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
...+|..+|-++...+..++.++..|.. .+.....+..+.+..+. .. .+|+|++|.... ...++++.+.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~-----~~---~~dlii~d~~l~~~~g~~~~~~l~ 84 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSV-NVVGEADDGAAALELIK-----AH---LPDVALLDYRMPGMDGAQVAAAVR 84 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSE-EEEEEESSHHHHHHHHH-----HH---CCSEEEEETTCSSSCHHHHHHHHH
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCe-EEEEEeCCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4568999999999999999999988742 23335677877776654 35 799999996432 3345566655
Q ss_pred hcccCCe-EEEE
Q 044253 88 TLFKVGG-IVIY 98 (139)
Q Consensus 88 ~lL~~gG-~ii~ 98 (139)
.. .+.. ++++
T Consensus 85 ~~-~~~~~ii~~ 95 (152)
T 3eul_A 85 SY-ELPTRVLLI 95 (152)
T ss_dssp HT-TCSCEEEEE
T ss_pred hc-CCCCeEEEE
Confidence 44 3443 4444
No 311
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=93.19 E-value=0.99 Score=29.52 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=52.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
...+|..||-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|.... ....+++.+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~ 74 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGC--NII-TFTSPLDALEALK-----GT---SVQLVISDMRMPEMGGEVFLEQVA 74 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESCHHHHHHHHT-----TS---CCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHh-----cC---CCCEEEEecCCCCCCHHHHHHHHH
Confidence 356799999999999999999998775 344 5677777776553 35 799999997433 2344555555
Q ss_pred hcccCCeEEEE
Q 044253 88 TLFKVGGIVIY 98 (139)
Q Consensus 88 ~lL~~gG~ii~ 98 (139)
..-..--++++
T Consensus 75 ~~~~~~~ii~l 85 (154)
T 2rjn_A 75 KSYPDIERVVI 85 (154)
T ss_dssp HHCTTSEEEEE
T ss_pred HhCCCCcEEEE
Confidence 43322334444
No 312
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=93.11 E-value=0.7 Score=29.32 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=50.1
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..+|-++......++.++..|+ .+.....+..+.+..+. .. ++|+|++|.... ....+++.+...
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~---~~dlii~d~~l~~~~g~~~~~~l~~~ 71 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDI--EILAELTEGGSAVQRVE-----TL---KPDIVIIDVDIPGVNGIQVLETLRKR 71 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHH-----HH---CCSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHH-----hc---CCCEEEEecCCCCCChHHHHHHHHhc
Confidence 3688999999999999999998874 23334556666655443 35 799999997533 334556665543
Q ss_pred ccCCe-EEEE
Q 044253 90 FKVGG-IVIY 98 (139)
Q Consensus 90 L~~gG-~ii~ 98 (139)
.++. ++++
T Consensus 72 -~~~~~ii~~ 80 (134)
T 3f6c_A 72 -QYSGIIIIV 80 (134)
T ss_dssp -TCCSEEEEE
T ss_pred -CCCCeEEEE
Confidence 3343 4444
No 313
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=93.05 E-value=1.2 Score=29.32 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=53.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..||-++......++.++..|+ .+.....+..+.+..+... .. .+|+|++|.... ....+++.+..
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~l~~~---~~---~~dliilD~~l~~~~g~~~~~~lr~ 107 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGF--NIIDTAADGEEAVIKYKNH---YP---NIDIVTLXITMPKMDGITCLSNIME 107 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHH---GG---GCCEEEECSSCSSSCHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHhc---CC---CCCEEEEeccCCCccHHHHHHHHHh
Confidence 35799999999999999999998876 3433677888777665322 23 589999997433 33445555554
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
.-..--++++.
T Consensus 108 ~~~~~~ii~ls 118 (157)
T 3hzh_A 108 FDKNARVIMIS 118 (157)
T ss_dssp HCTTCCEEEEE
T ss_pred hCCCCcEEEEe
Confidence 33223344443
No 314
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=93.05 E-value=0.79 Score=30.05 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=52.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..||-++......++.++..|+ .+. ...+..+.+..+. .. .+|+|++|.... ....+++.+..
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~ 82 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPY--TLH-FARDATQALQLLA-----SR---EVDLVISAAHLPQMDGPTLLARIHQ 82 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSC--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHhcccCc--EEE-EECCHHHHHHHHH-----cC---CCCEEEEeCCCCcCcHHHHHHHHHh
Confidence 45799999999999999999988775 233 5667777776653 35 899999997433 33455665555
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
.-..--+|++
T Consensus 83 ~~~~~~ii~~ 92 (153)
T 3hv2_A 83 QYPSTTRILL 92 (153)
T ss_dssp HCTTSEEEEE
T ss_pred HCCCCeEEEE
Confidence 3323334444
No 315
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=93.04 E-value=0.96 Score=28.04 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=47.3
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
.+|..+|-++......+..++..|+ .+.....+..+.+..+. .. ++|+|++|..... -..+++.+.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~--~vv~~~~~~~~a~~~~~-----~~---~~dlil~D~~l~~~~g~~~~~~l~~ 71 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGY--EVAGEATNGREAVEKYK-----EL---KPDIVTMDITMPEMNGIDAIKEIMK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HH---CCSEEEEECSCGGGCHHHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCc--EEEEEECCHHHHHHHHH-----hc---CCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 4688999999999999999987776 23445677777776553 34 7999999975432 2344555543
No 316
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=93.02 E-value=1.1 Score=28.71 Aligned_cols=86 Identities=16% Similarity=0.024 Sum_probs=54.2
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhc---c--cCCCceeEEEEcCCCc--chHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKI---H--FFFENFDYAFVDAHKD--NYRNY 82 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~---~--~~~~~fD~If~D~~~~--~~~~~ 82 (139)
...+|..+|-++......++.++..|....+ ....+..+.+..+...... . . .+|+|++|.... ....+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v-~~~~~~~~al~~l~~~~~~~~~~~~~---~~dlvi~D~~l~~~~g~~~ 80 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPI-YRCITGDQALDFLYQTGSYCNPDIAP---RPAVILLDLNLPGTDGREV 80 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCE-EEECSHHHHHHHHHTCCSSSCGGGCC---CCSEEEECSCCSSSCHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceE-EEECCHHHHHHHHHhcccccCcccCC---CCcEEEEECCCCCCCHHHH
Confidence 4568999999999999999999998863233 3556677776655310000 0 4 899999997543 23445
Q ss_pred HHHHhhcc--cCCeEEEEe
Q 044253 83 RETLMTLF--KVGGIVIYD 99 (139)
Q Consensus 83 ~~~~~~lL--~~gG~ii~~ 99 (139)
++.+...- ..-.++++.
T Consensus 81 ~~~l~~~~~~~~~~ii~~t 99 (149)
T 1k66_A 81 LQEIKQDEVLKKIPVVIMT 99 (149)
T ss_dssp HHHHTTSTTGGGSCEEEEE
T ss_pred HHHHHhCcccCCCeEEEEe
Confidence 55555432 233455553
No 317
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=92.97 E-value=0.41 Score=36.41 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=53.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|+++|.+++.++.+++ .|...-+.....|..+.+.++.. .. .+|.++.+... ...+......
T Consensus 187 ~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~----g~---g~d~~~~~~~~---~~~~~~~~~~ 252 (348)
T 4eez_A 187 FGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITG----GL---GVQSAIVCAVA---RIAFEQAVAS 252 (348)
T ss_dssp SCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTT----SS---CEEEEEECCSC---HHHHHHHHHT
T ss_pred CCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcC----CC---CceEEEEeccC---cchhheehee
Confidence 46799999999998877764 56543455555666665555431 24 68888887643 3457778899
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
|+++|.++.-..
T Consensus 253 l~~~G~~v~~g~ 264 (348)
T 4eez_A 253 LKPMGKMVAVAV 264 (348)
T ss_dssp EEEEEEEEECCC
T ss_pred ecCCceEEEEec
Confidence 999999987543
No 318
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=92.61 E-value=1.4 Score=28.73 Aligned_cols=79 Identities=11% Similarity=0.028 Sum_probs=52.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
+.+|..||-++...+..+..++..+.. .......+..+.+..+. .. .+|+|++|.... ....+++.+..
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~-----~~---~~dlii~D~~l~~~~g~~~~~~l~~ 90 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLTLQPDV-ESVLQAKNGQEAIQLLE-----KE---SVDIAILDVEMPVKTGLEVLEWIRS 90 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHT-----TS---CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHhh-----cc---CCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 457999999999999999999876531 23345667777776653 35 799999997533 33455666655
Q ss_pred cccCCe-EEEEe
Q 044253 89 LFKVGG-IVIYD 99 (139)
Q Consensus 89 lL~~gG-~ii~~ 99 (139)
. .++. ++++.
T Consensus 91 ~-~~~~~ii~ls 101 (150)
T 4e7p_A 91 E-KLETKVVVVT 101 (150)
T ss_dssp T-TCSCEEEEEE
T ss_pred h-CCCCeEEEEe
Confidence 4 3444 44443
No 319
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=92.48 E-value=1.3 Score=28.33 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=51.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..+|-++......+..++..|+ .+ ....+..+.+..+... .. .+|+|++|.... ....+++.+..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~--~v-~~~~~~~~a~~~~~~~---~~---~~dlvi~d~~l~~~~g~~~~~~l~~ 73 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGN--EV-LTASSSTEGLRIFTEN---CN---SIDVVITDMKMPKLSGMDILREIKK 73 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEESSHHHHHHHHHHT---TT---TCCEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCc--eE-EEeCCHHHHHHHHHhC---CC---CCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 46799999999999999999998875 23 3566777776555311 24 799999997433 23445665554
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
.-..-.++++
T Consensus 74 ~~~~~~ii~l 83 (143)
T 3jte_A 74 ITPHMAVIIL 83 (143)
T ss_dssp HCTTCEEEEE
T ss_pred hCCCCeEEEE
Confidence 4322334444
No 320
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=92.36 E-value=0.26 Score=37.91 Aligned_cols=77 Identities=13% Similarity=-0.032 Sum_probs=50.2
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
..+++|++++.+++.++.+++ .|...-+.....+..+.+.+.. .. .+|+||-..... .++.+.+
T Consensus 190 ~~Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~-----~~---g~Dvvid~~g~~----~~~~~~~ 253 (353)
T 4dup_A 190 AFGAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET-----GQ---GVDIILDMIGAA----YFERNIA 253 (353)
T ss_dssp HTTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH-----SS---CEEEEEESCCGG----GHHHHHH
T ss_pred HcCCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh-----CC---CceEEEECCCHH----HHHHHHH
Confidence 347799999999999988875 3543112222334444444332 24 799988765532 4667788
Q ss_pred cccCCeEEEEeCC
Q 044253 89 LFKVGGIVIYDNT 101 (139)
Q Consensus 89 lL~~gG~ii~~~~ 101 (139)
.|+++|.++.-..
T Consensus 254 ~l~~~G~iv~~g~ 266 (353)
T 4dup_A 254 SLAKDGCLSIIAF 266 (353)
T ss_dssp TEEEEEEEEECCC
T ss_pred HhccCCEEEEEEe
Confidence 9999999986443
No 321
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=92.33 E-value=1 Score=29.38 Aligned_cols=79 Identities=13% Similarity=-0.008 Sum_probs=52.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHH-cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKK-VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~-~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
+.+|..+|-++......+..++. .|+ .+.....+..+.+..+. .. .+|+|++|.... ....+++.+.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~--~v~~~~~~~~~a~~~l~-----~~---~~dlii~D~~l~~~~g~~~~~~l~ 74 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGY--AVVAEAADAGEAYRLYR-----ET---TPDIVVMDLTLPGPGGIEATRHIR 74 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTE--EEEEEESSHHHHHHHHH-----TT---CCSEEEECSCCSSSCHHHHHHHHH
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCc--EEEEEeCCHHHHHHHHh-----cC---CCCEEEEecCCCCCCHHHHHHHHH
Confidence 46799999999999999998876 453 23335778887776553 35 799999997533 2344556555
Q ss_pred hcccCCeEEEEe
Q 044253 88 TLFKVGGIVIYD 99 (139)
Q Consensus 88 ~lL~~gG~ii~~ 99 (139)
..-..-.++++.
T Consensus 75 ~~~~~~~ii~ls 86 (153)
T 3cz5_A 75 QWDGAARILIFT 86 (153)
T ss_dssp HHCTTCCEEEEE
T ss_pred HhCCCCeEEEEE
Confidence 443233345443
No 322
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=92.30 E-value=1.4 Score=28.15 Aligned_cols=83 Identities=11% Similarity=0.060 Sum_probs=50.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l 89 (139)
.+|..||-++......+..++..|+. ......+..+.+..+........ .||+|++|...+. -..+++.+.+.
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~--~v~~~~~~~~al~~~~~~~~~~~---~~dlvllD~~mp~~~G~~~~~~lr~~ 77 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIE--NIELACDGQEAFDKVKELTSKGE---NYNMIFMDVQMPKVDGLLSTKMIRRD 77 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESSHHHHHHHHHHHHHHTC---CCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCc--eEEEECCHHHHHHHHHHHHhcCC---CCCEEEEeCCCCCCChHHHHHHHHhh
Confidence 46889999999999999999887753 23345666666554421000015 7999999975432 23445555432
Q ss_pred ccCC-eEEEEe
Q 044253 90 FKVG-GIVIYD 99 (139)
Q Consensus 90 L~~g-G~ii~~ 99 (139)
..+. .++++.
T Consensus 78 ~~~~~~ii~lt 88 (133)
T 2r25_B 78 LGYTSPIVALT 88 (133)
T ss_dssp SCCCSCEEEEE
T ss_pred cCCCCCEEEEE
Confidence 2223 345543
No 323
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=92.19 E-value=0.43 Score=36.86 Aligned_cols=74 Identities=11% Similarity=-0.005 Sum_probs=48.3
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|.. .+--...+..+.+.++. .. .+|+||-... ....++.+.+.
T Consensus 196 ~g~~Vi~~~~~~~~~~~~~~----lGad-~vi~~~~~~~~~v~~~~-----~~---g~Dvvid~~g---~~~~~~~~~~~ 259 (363)
T 4dvj_A 196 TDLTVIATASRPETQEWVKS----LGAH-HVIDHSKPLAAEVAALG-----LG---APAFVFSTTH---TDKHAAEIADL 259 (363)
T ss_dssp CCSEEEEECSSHHHHHHHHH----TTCS-EEECTTSCHHHHHHTTC-----SC---CEEEEEECSC---HHHHHHHHHHH
T ss_pred cCCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCCHHHHHHHhc-----CC---CceEEEECCC---chhhHHHHHHH
Confidence 46799999999998888865 5653 22111223434443331 34 7998876443 23467788899
Q ss_pred ccCCeEEEEe
Q 044253 90 FKVGGIVIYD 99 (139)
Q Consensus 90 L~~gG~ii~~ 99 (139)
|+++|.++.-
T Consensus 260 l~~~G~iv~~ 269 (363)
T 4dvj_A 260 IAPQGRFCLI 269 (363)
T ss_dssp SCTTCEEEEC
T ss_pred hcCCCEEEEE
Confidence 9999999864
No 324
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=92.16 E-value=0.2 Score=38.07 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=49.0
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|...-+.....+..+.+.+... .. .+|+||-.... ..++.+.+.
T Consensus 172 ~Ga~Vi~~~~~~~~~~~~~~----~ga~~~~~~~~~~~~~~~~~~~~----~~---g~D~vid~~g~----~~~~~~~~~ 236 (334)
T 3qwb_A 172 KGAHTIAVASTDEKLKIAKE----YGAEYLINASKEDILRQVLKFTN----GK---GVDASFDSVGK----DTFEISLAA 236 (334)
T ss_dssp TTCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHTT----TS---CEEEEEECCGG----GGHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHH----cCCcEEEeCCCchHHHHHHHHhC----CC---CceEEEECCCh----HHHHHHHHH
Confidence 46799999999998887765 45421122222344444443321 24 69999866543 346778889
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 237 l~~~G~iv~~G 247 (334)
T 3qwb_A 237 LKRKGVFVSFG 247 (334)
T ss_dssp EEEEEEEEECC
T ss_pred hccCCEEEEEc
Confidence 99999998744
No 325
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=92.15 E-value=0.23 Score=37.69 Aligned_cols=77 Identities=9% Similarity=-0.008 Sum_probs=49.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|...-+.....+..+.+.+... .. .+|+||-.... ..++.+.+.
T Consensus 164 ~Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~~----~~---g~Dvvid~~g~----~~~~~~~~~ 228 (325)
T 3jyn_A 164 LGAKLIGTVSSPEKAAHAKA----LGAWETIDYSHEDVAKRVLELTD----GK---KCPVVYDGVGQ----DTWLTSLDS 228 (325)
T ss_dssp HTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTT----TC---CEEEEEESSCG----GGHHHHHTT
T ss_pred CCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHhC----CC---CceEEEECCCh----HHHHHHHHH
Confidence 56799999999999888875 35421122222344444433321 24 79998866543 346678899
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
|+++|.++.-..
T Consensus 229 l~~~G~iv~~g~ 240 (325)
T 3jyn_A 229 VAPRGLVVSFGN 240 (325)
T ss_dssp EEEEEEEEECCC
T ss_pred hcCCCEEEEEec
Confidence 999999987543
No 326
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=92.14 E-value=0.41 Score=36.92 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=49.1
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.++ +|+++|.+++.++.+++ .|...-+.....+..+.+.+.. .. .+|+||--... ...++.+.+
T Consensus 213 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~~-----~g---g~D~vid~~g~---~~~~~~~~~ 277 (371)
T 1f8f_A 213 CGASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT-----DG---GVNFALESTGS---PEILKQGVD 277 (371)
T ss_dssp HTCSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-----TS---CEEEEEECSCC---HHHHHHHHH
T ss_pred cCCCeEEEECCCHHHHHHHHH----cCCCEEecCCccCHHHHHHHhc-----CC---CCcEEEECCCC---HHHHHHHHH
Confidence 355 69999999999988865 3542112222234444444332 24 69999865432 345778889
Q ss_pred cccCCeEEEEeCC
Q 044253 89 LFKVGGIVIYDNT 101 (139)
Q Consensus 89 lL~~gG~ii~~~~ 101 (139)
.|+++|.++.-..
T Consensus 278 ~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 278 ALGILGKIAVVGA 290 (371)
T ss_dssp TEEEEEEEEECCC
T ss_pred HHhcCCEEEEeCC
Confidence 9999999987543
No 327
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=92.14 E-value=0.31 Score=37.62 Aligned_cols=75 Identities=15% Similarity=0.041 Sum_probs=48.4
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|...-+.....+..+.+.+.. .. .+|+||-.... ..++.+.+.
T Consensus 187 ~Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~-----~~---g~D~vid~~g~----~~~~~~~~~ 250 (362)
T 2c0c_A 187 AKCHVIGTCSSDEKSAFLKS----LGCDRPINYKTEPVGTVLKQEY-----PE---GVDVVYESVGG----AMFDLAVDA 250 (362)
T ss_dssp TTCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHC-----TT---CEEEEEECSCT----HHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHH----cCCcEEEecCChhHHHHHHHhc-----CC---CCCEEEECCCH----HHHHHHHHH
Confidence 46789999999988888765 4543111111234444443321 24 69999866542 367788899
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 251 l~~~G~iv~~g 261 (362)
T 2c0c_A 251 LATKGRLIVIG 261 (362)
T ss_dssp EEEEEEEEECC
T ss_pred HhcCCEEEEEe
Confidence 99999998643
No 328
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=92.00 E-value=1.6 Score=28.02 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=48.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..||-++......+..++..|+. + ....+..+.+..+. .. .+|+|++|.... +-.++++.+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~--v-~~~~~~~~al~~~~-----~~---~~dlvl~D~~lp~~~g~~~~~~lr~ 72 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYE--V-RRAASGEEALQQIY-----KN---LPDALICDVLLPGIDGYTLCKRVRQ 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCE--E-EEeCCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 457899999999999999999988862 3 35677887776653 35 799999997433 23445555543
No 329
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=91.99 E-value=0.48 Score=36.10 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=50.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLF 90 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL 90 (139)
+.+|+++|.+++..+.+++ .|.. .+--...+..+.+.++.. .. .+|+||--... ...++.+.+.|
T Consensus 196 ~~~Vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~v~~~t~----g~---g~d~v~d~~G~---~~~~~~~~~~l 260 (345)
T 3jv7_A 196 AARVIAVDLDDDRLALARE----VGAD-AAVKSGAGAADAIRELTG----GQ---GATAVFDFVGA---QSTIDTAQQVV 260 (345)
T ss_dssp CCEEEEEESCHHHHHHHHH----TTCS-EEEECSTTHHHHHHHHHG----GG---CEEEEEESSCC---HHHHHHHHHHE
T ss_pred CCEEEEEcCCHHHHHHHHH----cCCC-EEEcCCCcHHHHHHHHhC----CC---CCeEEEECCCC---HHHHHHHHHHH
Confidence 6799999999999988865 5653 222122344444444321 34 79998865442 34677888999
Q ss_pred cCCeEEEEeCC
Q 044253 91 KVGGIVIYDNT 101 (139)
Q Consensus 91 ~~gG~ii~~~~ 101 (139)
+++|.++.-..
T Consensus 261 ~~~G~iv~~G~ 271 (345)
T 3jv7_A 261 AVDGHISVVGI 271 (345)
T ss_dssp EEEEEEEECSC
T ss_pred hcCCEEEEECC
Confidence 99999987544
No 330
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=91.98 E-value=1.5 Score=27.86 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=48.8
Q ss_pred hhcceeEEeCCccHHHHHHHHHHH-cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKK-VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETL 86 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~-~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~ 86 (139)
...+|..+|-++......+..++. .|+. +.....+..+.+..+. .. .+|+|++|.... ....+++.+
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~--~v~~~~~~~~a~~~l~-----~~---~~dlii~d~~l~~~~g~~~~~~l 76 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYA--KIKIAYNPFDAGDLLH-----TV---KPDVVMLDLMMVGMDGFSICHRI 76 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTC--EEEEECSHHHHHHHHH-----HT---CCSEEEEETTCTTSCHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCcc--EEEEECCHHHHHHHHH-----hc---CCCEEEEecccCCCcHHHHHHHH
Confidence 356899999999999999999998 7763 3445667777766553 35 799999997533 234456666
Q ss_pred hh
Q 044253 87 MT 88 (139)
Q Consensus 87 ~~ 88 (139)
..
T Consensus 77 ~~ 78 (143)
T 3cnb_A 77 KS 78 (143)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 331
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=91.97 E-value=1.2 Score=28.15 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=49.8
Q ss_pred cceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
.+|..+|-++......+..+... |+ .+.....+..+.+..+. .. ++|+|++|.... +-.++++.+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~a~~~~~-----~~---~~dlvllD~~l~~~~g~~~~~~l~~ 72 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDM--EVIGTAYNGQDCLQMLE-----EK---RPDILLLDIIMPHLDGLAVLERIRA 72 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTE--EEEEEESSHHHHHHHHH-----HH---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHh-----cC---CCCEEEEecCCCCCCHHHHHHHHHh
Confidence 46889999999999999988865 32 22335677777776553 24 799999997543 23445555554
Q ss_pred cccCCe-EEEE
Q 044253 89 LFKVGG-IVIY 98 (139)
Q Consensus 89 lL~~gG-~ii~ 98 (139)
...+.. ++++
T Consensus 73 ~~~~~~~ii~l 83 (130)
T 1dz3_A 73 GFEHQPNVIML 83 (130)
T ss_dssp HCSSCCEEEEE
T ss_pred cCCCCCcEEEE
Confidence 323444 3444
No 332
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=91.87 E-value=1.6 Score=27.75 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=47.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..+|-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|.... .-..+++.+.+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~ 71 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGY--EVE-IAATAGEGLAKIE-----NE---FFNLALFXIKLPDMEGTELLEKAHK 71 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEECSBCSSSBHHHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCc--eEE-EeCCHHHHHHHHh-----cC---CCCEEEEecCCCCCchHHHHHHHHh
Confidence 35789999999999999999988776 344 6677777776553 35 799999996433 23345555543
No 333
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=91.79 E-value=0.99 Score=28.90 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=51.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc----hHHHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN----YRNYRETL 86 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~----~~~~~~~~ 86 (139)
..+|..||-++......++.++..|+ .+. ...+..+.+..+. .. ++|+|++|..... ..++++.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~D~~l~~~~~~g~~~~~~l 74 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDV--TIQ-CFASAESFMRQQI-----SD---DAIGMIIEAHLEDKKDSGIELLETL 74 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSS--EEE-EESSHHHHTTSCC-----CT---TEEEEEEETTGGGBTTHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHh-----cc---CCCEEEEeCcCCCCCccHHHHHHHH
Confidence 45899999999999999999988776 344 5667777765542 34 7999999976443 23455555
Q ss_pred hhcccCCeEEEEe
Q 044253 87 MTLFKVGGIVIYD 99 (139)
Q Consensus 87 ~~lL~~gG~ii~~ 99 (139)
...-..-.++++.
T Consensus 75 ~~~~~~~~ii~~s 87 (136)
T 3kto_A 75 VKRGFHLPTIVMA 87 (136)
T ss_dssp HHTTCCCCEEEEE
T ss_pred HhCCCCCCEEEEE
Confidence 5433223344443
No 334
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=91.71 E-value=1.6 Score=27.48 Aligned_cols=78 Identities=10% Similarity=0.007 Sum_probs=52.3
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
...+|..+|-++......++.++..|+ .+. ...+..+.+..+. .. ++|+|++|.... ....+++.+.
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlii~d~~l~~~~g~~~~~~l~ 73 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHW--QVE-IAHNGFDAGIKLS-----TF---EPAIMTLDLSMPKLDGLDVIRSLR 73 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HT---CCSEEEEESCBTTBCHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHH-----hc---CCCEEEEecCCCCCCHHHHHHHHH
Confidence 346899999999999999999998776 243 5667777766553 35 799999997533 2344555555
Q ss_pred hccc-CCeEEEE
Q 044253 88 TLFK-VGGIVIY 98 (139)
Q Consensus 88 ~lL~-~gG~ii~ 98 (139)
..-. +.-.+++
T Consensus 74 ~~~~~~~~~ii~ 85 (132)
T 3lte_A 74 QNKVANQPKILV 85 (132)
T ss_dssp TTTCSSCCEEEE
T ss_pred hcCccCCCeEEE
Confidence 4321 3444544
No 335
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=91.49 E-value=1.8 Score=27.67 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=51.4
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch--HHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY--RNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~--~~~~~~~~~ 88 (139)
..+|..+|-++......++.++..|+ .+. ...+..+.+..+. .. .+|+|++|. .... ..+++.+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~d~-~~~~~g~~~~~~l~~ 71 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGF--NVI-WAKNEQEAFTFLR-----RE---KIDLVFVDV-FEGEESLNLIRRIRE 71 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTC--EEE-EESSHHHHHHHHT-----TS---CCSEEEEEC-TTTHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHh-----cc---CCCEEEEeC-CCCCcHHHHHHHHHH
Confidence 35789999999999999999988776 344 5677777776553 35 799999997 5432 234454444
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
....-.++++
T Consensus 72 ~~~~~pii~l 81 (142)
T 2qxy_A 72 EFPDTKVAVL 81 (142)
T ss_dssp HCTTCEEEEE
T ss_pred HCCCCCEEEE
Confidence 3322334444
No 336
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=91.40 E-value=1.8 Score=27.49 Aligned_cols=76 Identities=11% Similarity=-0.080 Sum_probs=51.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..+|-++......++.++..+. ......+..+.+..+. .. ++|+|++|.... ....+++.+..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~---~v~~~~~~~~a~~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~~ 75 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFP---EVWSAGDGEEGERLFG-----LH---APDVIITDIRMPKLGGLEMLDRIKA 75 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCS---CEEEESSHHHHHHHHH-----HH---CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCc---EEEEECCHHHHHHHHh-----cc---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 45899999999999999999987554 2345667777776654 35 799999997433 33455565554
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
. .++..+++
T Consensus 76 ~-~~~~~ii~ 84 (137)
T 3hdg_A 76 G-GAKPYVIV 84 (137)
T ss_dssp T-TCCCEEEE
T ss_pred c-CCCCcEEE
Confidence 3 34444443
No 337
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=91.35 E-value=0.18 Score=33.37 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=44.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
+..+|..||=++......++.++..|+. +.....++.+.+..+. .. +||+|++|-..
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~--v~~~a~~g~eAl~~~~-----~~---~~DlvllDi~m 63 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHE--VAATASRMQEALDIAR-----KG---QFDIAIIDVNL 63 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCC--CCBCSCCHHHHHHHHH-----HC---CSSEEEECSSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHH-----hC---CCCEEEEecCC
Confidence 3457999999999999999999999873 3224567877776553 35 89999999643
No 338
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=91.34 E-value=0.37 Score=36.55 Aligned_cols=75 Identities=16% Similarity=0.064 Sum_probs=48.0
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+++|++++.+++.++.+++ .|....+.... .+..+.+.+.. .. .+|+|+-.... ..+..+.+
T Consensus 169 ~G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~-----~~---~~d~vi~~~g~----~~~~~~~~ 232 (333)
T 1v3u_A 169 KGCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKAS-----PD---GYDCYFDNVGG----EFLNTVLS 232 (333)
T ss_dssp TTCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHHC-----TT---CEEEEEESSCH----HHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHh----cCCcEEEecCCHHHHHHHHHHHh-----CC---CCeEEEECCCh----HHHHHHHH
Confidence 46789999999988877743 35421122112 34444444331 24 79999877653 24677889
Q ss_pred cccCCeEEEEeC
Q 044253 89 LFKVGGIVIYDN 100 (139)
Q Consensus 89 lL~~gG~ii~~~ 100 (139)
.|+++|.++.-.
T Consensus 233 ~l~~~G~~v~~g 244 (333)
T 1v3u_A 233 QMKDFGKIAICG 244 (333)
T ss_dssp TEEEEEEEEECC
T ss_pred HHhcCCEEEEEe
Confidence 999999998643
No 339
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=91.28 E-value=1.3 Score=27.75 Aligned_cols=75 Identities=11% Similarity=0.039 Sum_probs=51.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch--HHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY--RNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~--~~~~~~~~~l 89 (139)
.+|..||-++......+..++..|+ .+. ...+..+.+..+. .. ++|+|++|...+.. .++++.+...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGY--EVH-CAHDGNEAVEMVE-----EL---QPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----TT---CCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCE--EEE-EeCCHHHHHHHHh-----hC---CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4789999999999999999998886 243 4677887776553 35 89999999754432 3345555432
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
.+-.++++
T Consensus 72 -~~~~ii~~ 79 (120)
T 3f6p_A 72 -YDMPIIML 79 (120)
T ss_dssp -CCSCEEEE
T ss_pred -CCCCEEEE
Confidence 23344444
No 340
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=91.20 E-value=2.1 Score=27.90 Aligned_cols=76 Identities=12% Similarity=0.001 Sum_probs=51.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..+|-++......+..+...|+ .+. ...+..+.+..+. .. .+|+|++|.... ....+++.+...
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~---~~dliild~~l~~~~g~~~~~~l~~~ 72 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGF--TVS-SFASATEALAGLS-----AD---FAGIVISDIRMPGMDGLALFRKILAL 72 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHTCC-----TT---CCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCc--EEE-EECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 4688999999999999999998886 244 5677777776553 34 799999997433 234455555544
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
...-.++++
T Consensus 73 ~~~~pii~l 81 (155)
T 1qkk_A 73 DPDLPMILV 81 (155)
T ss_dssp CTTSCEEEE
T ss_pred CCCCCEEEE
Confidence 333344544
No 341
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=91.18 E-value=1.7 Score=26.70 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=50.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l 89 (139)
.+|..+|-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|..... -..+++.+.+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGY--EID-TAENGEEALKKFF-----SG---NYDLVILDIEMPGISGLEVAGEIRKK 70 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHh-----cC---CCCEEEEECCCCCCCHHHHHHHHHcc
Confidence 3688999999999999999998776 244 5667777766553 35 7999999975432 23445555443
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
-..-.++++
T Consensus 71 ~~~~~ii~~ 79 (116)
T 3a10_A 71 KKDAKIILL 79 (116)
T ss_dssp CTTCCEEEE
T ss_pred CCCCeEEEE
Confidence 222234444
No 342
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=91.18 E-value=0.82 Score=34.86 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=49.5
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEE-eCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLM-ESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~-~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+++|++++.+++..+.+++ .|...-+.+. ..+..+.+.+.. .. .+|+||-.... ...++.+.+
T Consensus 193 ~Ga~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~-----~~---~~D~vi~~~g~---~~~~~~~~~ 257 (347)
T 2hcy_A 193 MGYRVLGIDGGEGKEELFRS----IGGEVFIDFTKEKDIVGAVLKAT-----DG---GAHGVINVSVS---EAAIEASTR 257 (347)
T ss_dssp TTCEEEEEECSTTHHHHHHH----TTCCEEEETTTCSCHHHHHHHHH-----TS---CEEEEEECSSC---HHHHHHHTT
T ss_pred CCCcEEEEcCCHHHHHHHHH----cCCceEEecCccHhHHHHHHHHh-----CC---CCCEEEECCCc---HHHHHHHHH
Confidence 46789999999998877764 4542111111 134444444432 24 69999876542 346778889
Q ss_pred cccCCeEEEEeCC
Q 044253 89 LFKVGGIVIYDNT 101 (139)
Q Consensus 89 lL~~gG~ii~~~~ 101 (139)
.|+++|.++.-..
T Consensus 258 ~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 258 YVRANGTTVLVGM 270 (347)
T ss_dssp SEEEEEEEEECCC
T ss_pred HHhcCCEEEEEeC
Confidence 9999999986443
No 343
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=91.16 E-value=1.9 Score=27.32 Aligned_cols=80 Identities=13% Similarity=0.041 Sum_probs=52.2
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
...+|..+|-++......++.++..|+. +.. ..+..+.+..+.. .. .+|+|++|.... ....+++.+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~--v~~-~~~~~~a~~~~~~----~~---~~dlvi~D~~l~~~~g~~~~~~l~ 75 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGID--AVG-ADGAEEARLYLHY----QK---RIGLMITDLRMQPESGLDLIRTIR 75 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCC--EEE-ESSHHHHHHHHHH----CT---TEEEEEECSCCSSSCHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCce--EEE-eCCHHHHHHHHHh----CC---CCcEEEEeccCCCCCHHHHHHHHH
Confidence 3568999999999999999999988863 433 5667776655431 23 499999997533 3345566665
Q ss_pred hcccCC-eEEEEe
Q 044253 88 TLFKVG-GIVIYD 99 (139)
Q Consensus 88 ~lL~~g-G~ii~~ 99 (139)
..-.+. -++++.
T Consensus 76 ~~~~~~~~ii~~s 88 (136)
T 3hdv_A 76 ASERAALSIIVVS 88 (136)
T ss_dssp TSTTTTCEEEEEE
T ss_pred hcCCCCCCEEEEe
Confidence 431234 344443
No 344
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=91.02 E-value=0.36 Score=36.65 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=47.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|...-+.....+..+.+.+... .. .+|+||-.... ..++.+.+.
T Consensus 169 ~G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~~----~~---~~d~vi~~~g~----~~~~~~~~~ 233 (333)
T 1wly_A 169 LGATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREITG----GK---GVDVVYDSIGK----DTLQKSLDC 233 (333)
T ss_dssp TTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHHT----TC---CEEEEEECSCT----TTHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHhC----CC---CCeEEEECCcH----HHHHHHHHh
Confidence 46789999999988888765 34321111112333333333221 24 69999876543 346678899
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 234 l~~~G~iv~~g 244 (333)
T 1wly_A 234 LRPRGMCAAYG 244 (333)
T ss_dssp EEEEEEEEECC
T ss_pred hccCCEEEEEe
Confidence 99999998643
No 345
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=90.97 E-value=2.2 Score=28.36 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=51.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..||-++......+..++..+.. .+.....+..+.+..+. .. .+|+|++|.... .-..+++.+..
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~-----~~---~~dlvilD~~l~~~~g~~l~~~lr~ 95 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDM-KVVGFAKDGLEAVEKAI-----EL---KPDVITMDIEMPNLNGIEALKLIMK 95 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHH-----HH---CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHhc-----cC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 457999999999999999999876531 22234677877776654 35 799999997433 23445555543
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
. .+--++++.
T Consensus 96 ~-~~~~ii~~s 105 (164)
T 3t8y_A 96 K-APTRVIMVS 105 (164)
T ss_dssp H-SCCEEEEEE
T ss_pred c-CCceEEEEe
Confidence 2 233455543
No 346
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=90.93 E-value=0.36 Score=36.83 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=48.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|...-+.....+..+.+.+... .. .+|+||-...... .....+.
T Consensus 168 ~Ga~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~~~~~~~~----~~---g~Dvvid~~g~~~----~~~~~~~ 232 (340)
T 3gms_A 168 LNFRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYETVMELTN----GI---GADAAIDSIGGPD----GNELAFS 232 (340)
T ss_dssp HTCEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHHHHHHHTT----TS---CEEEEEESSCHHH----HHHHHHT
T ss_pred cCCEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHHHHHHHhC----CC---CCcEEEECCCChh----HHHHHHH
Confidence 56799999999999998876 35431122222344444443321 24 7999986554321 2334489
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
|+++|.++.-..
T Consensus 233 l~~~G~iv~~G~ 244 (340)
T 3gms_A 233 LRPNGHFLTIGL 244 (340)
T ss_dssp EEEEEEEEECCC
T ss_pred hcCCCEEEEEee
Confidence 999999987544
No 347
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=90.93 E-value=0.61 Score=35.65 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=47.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|.. .+--...+..+.+.+.. .. .+|+||-... ....++.+.+.
T Consensus 174 ~Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~-----~~---g~Dvv~d~~g---~~~~~~~~~~~ 237 (346)
T 3fbg_A 174 YGLRVITTASRNETIEWTKK----MGAD-IVLNHKESLLNQFKTQG-----IE---LVDYVFCTFN---TDMYYDDMIQL 237 (346)
T ss_dssp TTCEEEEECCSHHHHHHHHH----HTCS-EEECTTSCHHHHHHHHT-----CC---CEEEEEESSC---HHHHHHHHHHH
T ss_pred cCCEEEEEeCCHHHHHHHHh----cCCc-EEEECCccHHHHHHHhC-----CC---CccEEEECCC---chHHHHHHHHH
Confidence 46799999999999888876 3542 22111234444443331 35 7998876443 23456788899
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
|+++|.++.
T Consensus 238 l~~~G~iv~ 246 (346)
T 3fbg_A 238 VKPRGHIAT 246 (346)
T ss_dssp EEEEEEEEE
T ss_pred hccCCEEEE
Confidence 999999975
No 348
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=90.87 E-value=0.52 Score=35.99 Aligned_cols=75 Identities=11% Similarity=-0.010 Sum_probs=47.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++..+.+++ .|.. .+.-...+..+.+.+... .. .+|+||-..... .++.+.+.
T Consensus 183 ~Ga~Vi~~~~~~~~~~~~~~----~ga~-~v~~~~~~~~~~v~~~~~----~~---g~Dvvid~~g~~----~~~~~~~~ 246 (342)
T 4eye_A 183 MGAKVIAVVNRTAATEFVKS----VGAD-IVLPLEEGWAKAVREATG----GA---GVDMVVDPIGGP----AFDDAVRT 246 (342)
T ss_dssp TTCEEEEEESSGGGHHHHHH----HTCS-EEEESSTTHHHHHHHHTT----TS---CEEEEEESCC------CHHHHHHT
T ss_pred cCCEEEEEeCCHHHHHHHHh----cCCc-EEecCchhHHHHHHHHhC----CC---CceEEEECCchh----HHHHHHHh
Confidence 46799999999999988876 3542 221111344444433321 24 699998765432 46677889
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 247 l~~~G~iv~~G 257 (342)
T 4eye_A 247 LASEGRLLVVG 257 (342)
T ss_dssp EEEEEEEEEC-
T ss_pred hcCCCEEEEEE
Confidence 99999998643
No 349
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=90.80 E-value=1.1 Score=34.03 Aligned_cols=78 Identities=17% Similarity=-0.010 Sum_probs=51.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhccc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFK 91 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~ 91 (139)
..++++|.+++.++.|++ .|...-+.....+..+....+.. .. .+|+|+-.... ...++.+.++|+
T Consensus 186 ~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~----~~---g~d~v~d~~G~---~~~~~~~~~~l~ 251 (346)
T 4a2c_A 186 KSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE----LR---FNQLILETAGV---PQTVELAVEIAG 251 (346)
T ss_dssp SEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG----GC---SSEEEEECSCS---HHHHHHHHHHCC
T ss_pred cEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc----cC---Ccccccccccc---cchhhhhhheec
Confidence 356899999998888864 57643344344555555544431 24 68887765532 445778889999
Q ss_pred CCeEEEEeCCCC
Q 044253 92 VGGIVIYDNTLW 103 (139)
Q Consensus 92 ~gG~ii~~~~~~ 103 (139)
++|.+++-....
T Consensus 252 ~~G~~v~~g~~~ 263 (346)
T 4a2c_A 252 PHAQLALVGTLH 263 (346)
T ss_dssp TTCEEEECCCCS
T ss_pred CCeEEEEEeccC
Confidence 999998755443
No 350
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=90.78 E-value=0.45 Score=36.40 Aligned_cols=77 Identities=6% Similarity=-0.103 Sum_probs=49.4
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|...-+.....+..+.+.+... .. .+|+||-.... ..+..+.+.
T Consensus 188 ~Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~----~~---g~D~vid~~g~----~~~~~~~~~ 252 (349)
T 3pi7_A 188 EGFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK----AE---QPRIFLDAVTG----PLASAIFNA 252 (349)
T ss_dssp HTCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH----HH---CCCEEEESSCH----HHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc----CC---CCcEEEECCCC----hhHHHHHhh
Confidence 46799999999999988874 45432122222344444444321 24 69998765442 234677899
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
|+++|.++.-..
T Consensus 253 l~~~G~iv~~G~ 264 (349)
T 3pi7_A 253 MPKRARWIIYGR 264 (349)
T ss_dssp SCTTCEEEECCC
T ss_pred hcCCCEEEEEec
Confidence 999999987543
No 351
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=90.77 E-value=0.34 Score=36.60 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=47.5
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|...-+.....+..+.+.+... .. .+|+||-... ...++.+.+.
T Consensus 164 ~G~~V~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~~---~~D~vi~~~g----~~~~~~~~~~ 228 (327)
T 1qor_A 164 LGAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEITG----GK---KVRVVYDSVG----RDTWERSLDC 228 (327)
T ss_dssp HTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTT----TC---CEEEEEECSC----GGGHHHHHHT
T ss_pred cCCEEEEEeCCHHHHHHHHH----cCCCEEEECCCccHHHHHHHHhC----CC---CceEEEECCc----hHHHHHHHHH
Confidence 46789999999988888865 34321111112233333333211 24 6999987765 2346678899
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 229 l~~~G~iv~~g 239 (327)
T 1qor_A 229 LQRRGLMVSFG 239 (327)
T ss_dssp EEEEEEEEECC
T ss_pred hcCCCEEEEEe
Confidence 99999998643
No 352
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=90.73 E-value=1.8 Score=27.96 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=48.4
Q ss_pred cceeEEeCCccHHHHHHHHHHH--cCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKK--VEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~--~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
.+|..+|-++......+..+.. .|+ .+.....+..+.+..+. .. .+|+|++|...+ .-.++++.+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~--~~~~~~~~~~~al~~~~-----~~---~~dlvllD~~lp~~~g~~l~~~l~ 72 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSF--DQIDQADDGINAIQIAL-----KH---PPNVLLTDVRMPRMDGIELVDNIL 72 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCC--SEEEEESSHHHHHHHHT-----TS---CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCc--EEeeecccHHHHHHHHh-----cC---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4788999999998888887763 343 24436778887776553 35 799999997543 2334555554
Q ss_pred hcccCCeEEE
Q 044253 88 TLFKVGGIVI 97 (139)
Q Consensus 88 ~lL~~gG~ii 97 (139)
.. .++..++
T Consensus 73 ~~-~~~~~ii 81 (141)
T 3cu5_A 73 KL-YPDCSVI 81 (141)
T ss_dssp HH-CTTCEEE
T ss_pred hh-CCCCcEE
Confidence 43 3444443
No 353
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=90.58 E-value=0.34 Score=37.60 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=50.2
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh---hHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ---LLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~---~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~ 85 (139)
.++ +|++++.+++..+.+++ .|...-+.....|..+.+.+ +. .+ .+|+||--.. ....++.
T Consensus 205 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~-----~g---g~Dvvid~~G---~~~~~~~ 269 (370)
T 4ej6_A 205 AGATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLV-----PG---GVDVVIECAG---VAETVKQ 269 (370)
T ss_dssp TTCSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSS-----TT---CEEEEEECSC---CHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhcc-----CC---CCCEEEECCC---CHHHHHH
Confidence 355 89999999999888875 46532222223455454443 21 23 7999886543 2345778
Q ss_pred HhhcccCCeEEEEeCC
Q 044253 86 LMTLFKVGGIVIYDNT 101 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~ 101 (139)
+.+.|+++|.++.-..
T Consensus 270 ~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 270 STRLAKAGGTVVILGV 285 (370)
T ss_dssp HHHHEEEEEEEEECSC
T ss_pred HHHHhccCCEEEEEec
Confidence 8899999999987543
No 354
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=90.53 E-value=1.8 Score=27.88 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=51.5
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcC-CCCcEEEEeCChHHHHHhhHHhhhcc-cCCCceeEEEEcCCCcch--HHHHH
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVE-VDLKINLMESRALPALDQLLKDEKIH-FFFENFDYAFVDAHKDNY--RNYRE 84 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g-~~~~i~~~~~da~~~l~~~~~~~~~~-~~~~~fD~If~D~~~~~~--~~~~~ 84 (139)
....+|..||-++......+..++..| + .+.. ..+..+.+..+.. . . .+|+|++|...... ..+++
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~--~v~~-~~~~~~~~~~~~~----~~~---~~dlvi~D~~l~~~~g~~~~~ 87 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRY--RVTR-TVGRAAQIVQRTD----GLD---AFDILMIDGAALDTAELAAIE 87 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSC--EEEE-ECCCHHHHTTCHH----HHT---TCSEEEEECTTCCHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCe--EEEE-eCCHHHHHHHHHh----cCC---CCCEEEEeCCCCCccHHHHHH
Confidence 345689999999999999999999887 4 2333 5566655544431 2 5 89999999754432 33455
Q ss_pred HHhhcccCCe-EEEEe
Q 044253 85 TLMTLFKVGG-IVIYD 99 (139)
Q Consensus 85 ~~~~lL~~gG-~ii~~ 99 (139)
.+...- ++. ++++.
T Consensus 88 ~l~~~~-~~~~ii~lt 102 (146)
T 4dad_A 88 KLSRLH-PGLTCLLVT 102 (146)
T ss_dssp HHHHHC-TTCEEEEEE
T ss_pred HHHHhC-CCCcEEEEe
Confidence 554432 343 44443
No 355
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=90.52 E-value=2.2 Score=27.72 Aligned_cols=76 Identities=11% Similarity=-0.019 Sum_probs=49.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcc-cCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIH-FFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~-~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
.+|..+|-++......+..++.. |+ .......+..+.+..+. . . .+|+|++|.... ....+++.+.
T Consensus 4 ~~iLivdd~~~~~~~l~~~L~~~~g~--~~v~~~~~~~~a~~~l~-----~~~---~~dlvi~d~~l~~~~g~~~~~~l~ 73 (154)
T 2qsj_A 4 TVVLIVDDHHLIRAGAKNLLEGAFSG--MRVEGAETVSDALAFLE-----ADN---TVDLILLDVNLPDAEAIDGLVRLK 73 (154)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCTT--EEEEEESSHHHHHHHHH-----TTC---CCSEEEECC------CHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEecCHHHHHHHHh-----ccC---CCCEEEEeCCCCCCchHHHHHHHH
Confidence 47899999999999999999887 64 23445667777766553 3 5 899999997432 2234555554
Q ss_pred hcccCCeEEEE
Q 044253 88 TLFKVGGIVIY 98 (139)
Q Consensus 88 ~lL~~gG~ii~ 98 (139)
.. .++..+++
T Consensus 74 ~~-~~~~~ii~ 83 (154)
T 2qsj_A 74 RF-DPSNAVAL 83 (154)
T ss_dssp HH-CTTSEEEE
T ss_pred Hh-CCCCeEEE
Confidence 44 34444443
No 356
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=90.50 E-value=0.38 Score=36.53 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=49.4
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
..+++|++++.+++..+.+.+ ..|...-+.....+..+.+.+.. .. .+|+||-.... ..++.+.+
T Consensus 172 ~~Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~-----~~---~~d~vi~~~g~----~~~~~~~~ 236 (336)
T 4b7c_A 172 LKGCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKREC-----PK---GIDVFFDNVGG----EILDTVLT 236 (336)
T ss_dssp HTTCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHHC-----TT---CEEEEEESSCH----HHHHHHHT
T ss_pred HCCCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHhc-----CC---CceEEEECCCc----chHHHHHH
Confidence 356799999999988877732 34553112222234444444332 24 79998876542 36778889
Q ss_pred cccCCeEEEEeC
Q 044253 89 LFKVGGIVIYDN 100 (139)
Q Consensus 89 lL~~gG~ii~~~ 100 (139)
.|+++|.++.-.
T Consensus 237 ~l~~~G~iv~~G 248 (336)
T 4b7c_A 237 RIAFKARIVLCG 248 (336)
T ss_dssp TEEEEEEEEECC
T ss_pred HHhhCCEEEEEe
Confidence 999999998643
No 357
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=90.43 E-value=2.2 Score=26.76 Aligned_cols=65 Identities=15% Similarity=0.011 Sum_probs=47.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~ 87 (139)
.+|..||-++......+..++..|+ .+. ...+..+.+..+. .. ++|+|++|...+. -..+++.+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~al~~l~-----~~---~~dlvllD~~~p~~~g~~~~~~l~ 69 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGY--EVI-EAENGQIALEKLS-----EF---TPDLIVLXIMMPVMDGFTVLKKLQ 69 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHT-----TB---CCSEEEECSCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHH-----hc---CCCEEEEeccCCCCcHHHHHHHHH
Confidence 4789999999999999999998886 243 5678888776653 35 7999999974332 334555554
No 358
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=90.42 E-value=2.3 Score=27.04 Aligned_cols=79 Identities=5% Similarity=0.014 Sum_probs=53.5
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcc-cCCCceeEEEEcCCCc--chHHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIH-FFFENFDYAFVDAHKD--NYRNYRETL 86 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~-~~~~~fD~If~D~~~~--~~~~~~~~~ 86 (139)
...+|..+|-++......+..++..|+ .+ ....+..+.+..+. . . .+|+|++|.... ....+++.+
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~l~-----~~~---~~dlvilD~~l~~~~g~~~~~~l 82 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGA--EV-TVHPSGSAFFQHRS-----QLS---TCDLLIVSDQLVDLSIFSLLDIV 82 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEESSHHHHHHTGG-----GGG---SCSEEEEETTCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCC--EE-EEeCCHHHHHHHHH-----hCC---CCCEEEEeCCCCCCCHHHHHHHH
Confidence 456799999999999999999998876 34 35667777776553 4 5 799999997543 234455655
Q ss_pred hhcccCCeEEEEe
Q 044253 87 MTLFKVGGIVIYD 99 (139)
Q Consensus 87 ~~lL~~gG~ii~~ 99 (139)
......-.++++.
T Consensus 83 ~~~~~~~~ii~ls 95 (138)
T 2b4a_A 83 KEQTKQPSVLILT 95 (138)
T ss_dssp TTSSSCCEEEEEE
T ss_pred HhhCCCCCEEEEE
Confidence 5532233344444
No 359
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=90.31 E-value=2.2 Score=27.10 Aligned_cols=67 Identities=7% Similarity=-0.073 Sum_probs=47.6
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
...+|..||-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|+ -+.. ....+++.+...
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~---~~dlvi-~~~~-~g~~~~~~l~~~ 83 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGF--MAD-VTESLEDGEYLMD-----IR---NYDLVM-VSDK-NALSFVSRIKEK 83 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HS---CCSEEE-ECST-THHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCc--EEE-EeCCHHHHHHHHH-----cC---CCCEEE-EcCc-cHHHHHHHHHhc
Confidence 456899999999999999999998776 344 6677777776553 35 799999 3332 334556666555
No 360
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=90.16 E-value=0.37 Score=37.65 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=49.7
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCCh-HHHHHhhHHhhhcccCCCceeEEEEcCCCcc---------
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRA-LPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------- 78 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da-~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------- 78 (139)
.++ +|+++|.+++.++.+++ .|. +-+.....|. .+.+.++.. .. .+|+||--.....
T Consensus 208 ~Ga~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~~----g~---g~Dvvid~~g~~~~~~~~~~~~ 275 (398)
T 2dph_A 208 LGAACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQILG----KP---EVDCGVDAVGFEAHGLGDEANT 275 (398)
T ss_dssp HTCSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHHS----SS---CEEEEEECSCTTCBCSGGGTTS
T ss_pred cCCCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHhC----CC---CCCEEEECCCCccccccccccc
Confidence 356 89999999998888764 464 2222222343 344443321 24 6999986544321
Q ss_pred --hHHHHHHHhhcccCCeEEEEeCC
Q 044253 79 --YRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 79 --~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
....++.+++.|+++|.+++-..
T Consensus 276 ~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 276 ETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp BCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred cccHHHHHHHHHHHhcCCEEEEecc
Confidence 12357788899999999986443
No 361
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=90.15 E-value=2.7 Score=27.47 Aligned_cols=68 Identities=13% Similarity=-0.061 Sum_probs=48.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
...+|..||-++......++.++..|+ .+ ....+..+.+..+. .. ++|+|++|.... +...+++.+.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~l~-----~~---~~dlii~D~~l~~~~g~~~~~~lr 74 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGY--QT-EHVRNGREAVRFLS-----LT---RPDLIISDVLMPEMDGYALCRWLK 74 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTC--EE-EEESSHHHHHHHHT-----TC---CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCC--EE-EEeCCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 346899999999999999999998886 24 45567777776653 35 899999997433 3344555554
Q ss_pred h
Q 044253 88 T 88 (139)
Q Consensus 88 ~ 88 (139)
.
T Consensus 75 ~ 75 (154)
T 3gt7_A 75 G 75 (154)
T ss_dssp H
T ss_pred h
Confidence 4
No 362
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=90.05 E-value=0.87 Score=35.20 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=50.1
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEE--eCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLM--ESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~--~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.++ +|+++|.+++.++.|++ .|...-+... ..+..+.+.++. .. .+|+||--... ...++.+
T Consensus 216 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~~-----~g---g~D~vid~~g~---~~~~~~~ 280 (378)
T 3uko_A 216 AGASRIIGIDIDSKKYETAKK----FGVNEFVNPKDHDKPIQEVIVDLT-----DG---GVDYSFECIGN---VSVMRAA 280 (378)
T ss_dssp HTCSCEEEECSCTTHHHHHHT----TTCCEEECGGGCSSCHHHHHHHHT-----TS---CBSEEEECSCC---HHHHHHH
T ss_pred cCCCeEEEEcCCHHHHHHHHH----cCCcEEEccccCchhHHHHHHHhc-----CC---CCCEEEECCCC---HHHHHHH
Confidence 355 89999999999988863 5653211111 234445444442 34 79999865432 3457788
Q ss_pred hhcccCC-eEEEEeCC
Q 044253 87 MTLFKVG-GIVIYDNT 101 (139)
Q Consensus 87 ~~lL~~g-G~ii~~~~ 101 (139)
.+.|++| |.++.-..
T Consensus 281 ~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 281 LECCHKGWGTSVIVGV 296 (378)
T ss_dssp HHTBCTTTCEEEECSC
T ss_pred HHHhhccCCEEEEEcc
Confidence 8999996 99987544
No 363
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=89.99 E-value=3 Score=28.93 Aligned_cols=76 Identities=9% Similarity=0.058 Sum_probs=50.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..+|-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|...+ +-.++++.+...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlvllD~~l~~~~g~~~~~~lr~~ 71 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMF--TVD-VCYDGEEGMYMAL-----NE---PFDVVILDIMLPVHDGWEILKSMRES 71 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----cC---CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4789999999999999999988775 243 5677777766553 35 799999997533 233455555443
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
-..-.++++
T Consensus 72 ~~~~~ii~l 80 (225)
T 1kgs_A 72 GVNTPVLML 80 (225)
T ss_dssp TCCCCEEEE
T ss_pred CCCCCEEEE
Confidence 222334444
No 364
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=89.97 E-value=0.57 Score=35.67 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=48.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|...-+.....+..+.+.+. .. .+|+||-.... ...++.+.+.
T Consensus 187 ~Ga~Vi~~~~~~~~~~~~~~----lGa~~~~d~~~~~~~~~~~~~------~~---~~d~vid~~g~---~~~~~~~~~~ 250 (339)
T 1rjw_A 187 MGLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK------VG---GVHAAVVTAVS---KPAFQSAYNS 250 (339)
T ss_dssp TTCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH------HS---SEEEEEESSCC---HHHHHHHHHH
T ss_pred cCCEEEEEeCCHHHHHHHHH----CCCCEEecCCCccHHHHHHHH------hC---CCCEEEECCCC---HHHHHHHHHH
Confidence 46799999999999888764 454211111112333333332 14 79999876542 3456778899
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
|+++|.++.-..
T Consensus 251 l~~~G~~v~~g~ 262 (339)
T 1rjw_A 251 IRRGGACVLVGL 262 (339)
T ss_dssp EEEEEEEEECCC
T ss_pred hhcCCEEEEecc
Confidence 999999986443
No 365
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=89.94 E-value=2.5 Score=29.04 Aligned_cols=76 Identities=8% Similarity=0.021 Sum_probs=52.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..||-++......+..+...|+ .+.....+..+.+..+. .. .+|+|++|...+ +...+++.+...
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~~~-----~~---~~dlvi~D~~~p~~~g~~~~~~l~~~ 83 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGY--EIVGEAGDGQEAVELAE-----LH---KPDLVIMDVKMPRRDGIDAASEIASK 83 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HH---CCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh-----hc---CCCEEEEeCCCCCCChHHHHHHHHhc
Confidence 5799999999999999999988776 24446778888776553 34 799999997433 234455555443
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
.+..++++
T Consensus 84 -~~~pii~l 91 (205)
T 1s8n_A 84 -RIAPIVVL 91 (205)
T ss_dssp -TCSCEEEE
T ss_pred -CCCCEEEE
Confidence 23455555
No 366
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=89.94 E-value=2.7 Score=27.22 Aligned_cols=75 Identities=12% Similarity=0.005 Sum_probs=48.3
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..||-++......++.++. |+ .+. ...+..+.+..+.. .. +||+|++|.... ...++++.+..
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~--~v~-~~~~~~~a~~~l~~----~~---~~dlvi~D~~l~~~~g~~~~~~l~~ 72 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DF--EVT-TCESGPEALACIKK----SD---PFSVIMVDMRMPGMEGTEVIQKARL 72 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TS--EEE-EESSHHHHHHHHHH----SC---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-Cc--eEE-EeCCHHHHHHHHHc----CC---CCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 45799999999999999988864 43 233 55677777665532 24 589999997433 33445555554
Q ss_pred cccCCeEEE
Q 044253 89 LFKVGGIVI 97 (139)
Q Consensus 89 lL~~gG~ii 97 (139)
.- ++..++
T Consensus 73 ~~-~~~~ii 80 (151)
T 3kcn_A 73 IS-PNSVYL 80 (151)
T ss_dssp HC-SSCEEE
T ss_pred cC-CCcEEE
Confidence 33 444433
No 367
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=89.92 E-value=0.31 Score=37.32 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=49.7
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.++ +|+++|.+++..+.+++ .|...-+.....+..+.+.+... .. .+|+||--... ...++.+.+
T Consensus 189 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t~----g~---g~D~v~d~~g~---~~~~~~~~~ 254 (352)
T 3fpc_A 189 LGAGRIFAVGSRKHCCDIALE----YGATDIINYKNGDIVEQILKATD----GK---GVDKVVIAGGD---VHTFAQAVK 254 (352)
T ss_dssp TTCSSEEEECCCHHHHHHHHH----HTCCEEECGGGSCHHHHHHHHTT----TC---CEEEEEECSSC---TTHHHHHHH
T ss_pred cCCcEEEEECCCHHHHHHHHH----hCCceEEcCCCcCHHHHHHHHcC----CC---CCCEEEECCCC---hHHHHHHHH
Confidence 355 79999999998888875 45532122223455554444321 24 69999854432 235677889
Q ss_pred cccCCeEEEEeCC
Q 044253 89 LFKVGGIVIYDNT 101 (139)
Q Consensus 89 lL~~gG~ii~~~~ 101 (139)
.|+++|.++.-..
T Consensus 255 ~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 255 MIKPGSDIGNVNY 267 (352)
T ss_dssp HEEEEEEEEECCC
T ss_pred HHhcCCEEEEecc
Confidence 9999999986543
No 368
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=89.40 E-value=3.6 Score=28.64 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=48.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh--h------cccCCCceeEEEEcCCCc--chH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE--K------IHFFFENFDYAFVDAHKD--NYR 80 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~--~------~~~~~~~fD~If~D~~~~--~~~ 80 (139)
..+|..||-++......++.++..|+. ......+..+.+..+.... + ... .||+|++|.... +-.
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~--~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~---~~dlillD~~lp~~~G~ 135 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVS--EVEQCDSGKEALRLVTEGLTQREEQGSVDKL---PFDYIFMDCQMPEMDGY 135 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHHHHHHHTCSSCC---SCSEEEEESCCSSSCHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCC--eeeeeCCHHHHHHHHHhhcccccccccccCC---CCCEEEEcCCCCCCCHH
Confidence 457999999999999999999998863 3445567777766543210 0 013 699999997543 234
Q ss_pred HHHHHHhh
Q 044253 81 NYRETLMT 88 (139)
Q Consensus 81 ~~~~~~~~ 88 (139)
++++.+..
T Consensus 136 el~~~lr~ 143 (206)
T 3mm4_A 136 EATREIRK 143 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 45555543
No 369
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=89.33 E-value=2.4 Score=30.32 Aligned_cols=67 Identities=13% Similarity=0.011 Sum_probs=48.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..||-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|.... +-.++++.+..
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlvllD~~lp~~~g~~~~~~lr~ 91 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGF--EVY-TATNGAQALDRAR-----ET---RPDAVILDVXMPGMDGFGVLRRLRA 91 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HH---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 35799999999999999999998876 244 5678888776653 35 799999997433 23445555544
No 370
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=89.19 E-value=0.88 Score=34.86 Aligned_cols=76 Identities=8% Similarity=0.017 Sum_probs=47.6
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCC---hHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESR---ALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~d---a~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~ 85 (139)
.++ +|+++|.+++..+.+++ .|.. .++..+ ..+....+.... .. .+|+||--... ...++.
T Consensus 194 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~--~~---g~D~vid~~g~---~~~~~~ 258 (356)
T 1pl8_A 194 MGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQL--GC---KPEVTIECTGA---EASIQA 258 (356)
T ss_dssp TTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHH--TS---CCSEEEECSCC---HHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHHh--CC---CCCEEEECCCC---hHHHHH
Confidence 356 89999999998888764 5653 233222 233333322111 14 69999865542 335677
Q ss_pred HhhcccCCeEEEEeC
Q 044253 86 LMTLFKVGGIVIYDN 100 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~ 100 (139)
+.+.|+++|.++.-.
T Consensus 259 ~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 259 GIYATRSGGTLVLVG 273 (356)
T ss_dssp HHHHSCTTCEEEECS
T ss_pred HHHHhcCCCEEEEEe
Confidence 889999999998644
No 371
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=89.14 E-value=0.36 Score=36.35 Aligned_cols=38 Identities=0% Similarity=-0.009 Sum_probs=29.2
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEE
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKIN 41 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~ 41 (139)
+++++..+.+++++|+++++++.|+++++...-...+.
T Consensus 250 ~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~ 287 (297)
T 2zig_A 250 LIAAARWGRRALGVELVPRYAQLAKERFAREVPGFSLE 287 (297)
T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEE
T ss_pred HHHHHHcCCeEEEEeCCHHHHHHHHHHHHHhccccchh
Confidence 34566677899999999999999999998754333333
No 372
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=89.12 E-value=1.3 Score=34.13 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=48.9
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.++ +|++++.+++..+.+++ .|...-+.... .+..+.+.++. .. .+|+||--... ...++.+
T Consensus 218 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~v~~~~-----~~---g~Dvvid~~G~---~~~~~~~ 282 (376)
T 1e3i_A 218 AGASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT-----AG---GVDYSLDCAGT---AQTLKAA 282 (376)
T ss_dssp TTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH-----TS---CBSEEEESSCC---HHHHHHH
T ss_pred cCCCeEEEEcCCHHHHHHHHH----hCCcEEEccccccchHHHHHHHHh-----CC---CccEEEECCCC---HHHHHHH
Confidence 355 79999999999988864 46531111111 23444444432 24 79999865432 3457788
Q ss_pred hhcccCC-eEEEEeCC
Q 044253 87 MTLFKVG-GIVIYDNT 101 (139)
Q Consensus 87 ~~lL~~g-G~ii~~~~ 101 (139)
++.|+++ |.++.-..
T Consensus 283 ~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 283 VDCTVLGWGSCTVVGA 298 (376)
T ss_dssp HHTBCTTTCEEEECCC
T ss_pred HHHhhcCCCEEEEECC
Confidence 8999999 99986443
No 373
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=89.12 E-value=3.2 Score=26.86 Aligned_cols=85 Identities=15% Similarity=0.065 Sum_probs=53.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh----hcccCCCceeEEEEcCCCc--chHHHHH
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE----KIHFFFENFDYAFVDAHKD--NYRNYRE 84 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~----~~~~~~~~fD~If~D~~~~--~~~~~~~ 84 (139)
..+|..||-++......++.++..|....+. ...+..+.+..+.... .... .+|+|++|.... ...++++
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~-~~~~~~~al~~l~~~~~~~~~~~~---~~dliilD~~l~~~~g~~~~~ 79 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEII-AFTDGTSALNYLFGDDKSGRVSAG---RAQLVLLDLNLPDMTGIDILK 79 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEE-EESSHHHHHHHHHCTTSSSGGGTT---CBEEEEECSBCSSSBHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEE-EeCCHHHHHHHHhccccccccccC---CCCEEEEeCCCCCCcHHHHHH
Confidence 3578999999999999999999998742333 4567777766542000 0024 799999996432 3345566
Q ss_pred HHhh--cccCCeEEEEe
Q 044253 85 TLMT--LFKVGGIVIYD 99 (139)
Q Consensus 85 ~~~~--lL~~gG~ii~~ 99 (139)
.+.. ....--++++.
T Consensus 80 ~lr~~~~~~~~pii~~t 96 (152)
T 3heb_A 80 LVKENPHTRRSPVVILT 96 (152)
T ss_dssp HHHHSTTTTTSCEEEEE
T ss_pred HHHhcccccCCCEEEEe
Confidence 6554 22233355543
No 374
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=89.06 E-value=1.3 Score=34.01 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=48.8
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.++ +|++++.+++.++.+++ .|...-+.... .+..+.+.+.. .. .+|+||--... ...++.+
T Consensus 215 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~-----~~---g~D~vid~~g~---~~~~~~~ 279 (374)
T 1cdo_A 215 AGAKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKMT-----NG---GVDFSLECVGN---VGVMRNA 279 (374)
T ss_dssp TTCSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHHH-----TS---CBSEEEECSCC---HHHHHHH
T ss_pred cCCCEEEEEcCCHHHHHHHHH----hCCceEEeccccchhHHHHHHHHh-----CC---CCCEEEECCCC---HHHHHHH
Confidence 355 79999999999998864 46531111111 23444444432 24 79999865432 3457788
Q ss_pred hhcccCC-eEEEEeCC
Q 044253 87 MTLFKVG-GIVIYDNT 101 (139)
Q Consensus 87 ~~lL~~g-G~ii~~~~ 101 (139)
++.|+++ |.++.-..
T Consensus 280 ~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 280 LESCLKGWGVSVLVGW 295 (374)
T ss_dssp HHTBCTTTCEEEECSC
T ss_pred HHHhhcCCcEEEEEcC
Confidence 8999999 99986443
No 375
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=88.99 E-value=1.3 Score=33.73 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=48.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+++|++++.+++..+.+++ .|...-+.... .+..+.+.+...+. ... .+|+||-.... ...++.+.+
T Consensus 191 ~Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~~-~g~---g~D~vid~~g~---~~~~~~~~~ 259 (352)
T 1e3j_A 191 YGAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRSA-IGD---LPNVTIDCSGN---EKCITIGIN 259 (352)
T ss_dssp TTCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHHH-SSS---CCSEEEECSCC---HHHHHHHHH
T ss_pred cCCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhccc-cCC---CCCEEEECCCC---HHHHHHHHH
Confidence 46679999999999888864 56531122111 33333333322100 014 69999865542 335677889
Q ss_pred cccCCeEEEEeC
Q 044253 89 LFKVGGIVIYDN 100 (139)
Q Consensus 89 lL~~gG~ii~~~ 100 (139)
.|+++|.++.-.
T Consensus 260 ~l~~~G~iv~~G 271 (352)
T 1e3j_A 260 ITRTGGTLMLVG 271 (352)
T ss_dssp HSCTTCEEEECS
T ss_pred HHhcCCEEEEEe
Confidence 999999998643
No 376
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=88.98 E-value=4 Score=28.46 Aligned_cols=77 Identities=8% Similarity=-0.031 Sum_probs=51.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..||-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|...+ +..++++.+..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlvllD~~l~~~~g~~~~~~l~~ 75 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGF--EVA-TAVDGAEALRSAT-----EN---RPDAIVLDINMPVLDGVSVVTALRA 75 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34799999999999999999988776 243 5677777776553 35 799999997433 23445555544
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
.-..-.++++
T Consensus 76 ~~~~~~ii~l 85 (233)
T 1ys7_A 76 MDNDVPVCVL 85 (233)
T ss_dssp TTCCCCEEEE
T ss_pred cCCCCCEEEE
Confidence 3222334444
No 377
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=88.97 E-value=2.9 Score=26.21 Aligned_cols=84 Identities=10% Similarity=0.003 Sum_probs=52.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh--hhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD--EKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~--~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
.+|..+|-++......++.++..|.... .....+..+.+..+... .+... .+|+|++|.... ...++++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~---~~dlvi~d~~~~~~~g~~~~~~l~ 78 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHE-VVTVRDGMEAMAYLRQEGEYANAS---RPDLILLXLNLPKKDGREVLAEIK 78 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCE-EEEECSHHHHHHHHTTCGGGGSCC---CCSEEEECSSCSSSCHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCce-EEEECCHHHHHHHHHcccccccCC---CCcEEEEecCCCcccHHHHHHHHH
Confidence 4788999999999999999998886322 33556677776655310 00004 799999997543 2344555555
Q ss_pred hcc--cCCeEEEEe
Q 044253 88 TLF--KVGGIVIYD 99 (139)
Q Consensus 88 ~lL--~~gG~ii~~ 99 (139)
..- ..-.++++.
T Consensus 79 ~~~~~~~~pii~ls 92 (140)
T 1k68_A 79 SDPTLKRIPVVVLS 92 (140)
T ss_dssp HSTTGGGSCEEEEE
T ss_pred cCcccccccEEEEe
Confidence 432 233455553
No 378
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=88.96 E-value=0.79 Score=35.86 Aligned_cols=79 Identities=6% Similarity=-0.059 Sum_probs=46.4
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.++ +|++++.+++.++.+++ .|...-+.....|..+.+.++.. .. .+|+||--.... ...++.+.+
T Consensus 236 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~i~~~t~----g~---g~D~vid~~g~~--~~~~~~~~~ 302 (404)
T 3ip1_A 236 AGASKVILSEPSEVRRNLAKE----LGADHVIDPTKENFVEAVLDYTN----GL---GAKLFLEATGVP--QLVWPQIEE 302 (404)
T ss_dssp TTCSEEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHHHHHHHTT----TC---CCSEEEECSSCH--HHHHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHH----cCCCEEEcCCCCCHHHHHHHHhC----CC---CCCEEEECCCCc--HHHHHHHHH
Confidence 355 89999999999988875 35431111122344444444321 24 699998654432 123334444
Q ss_pred c----ccCCeEEEEeCC
Q 044253 89 L----FKVGGIVIYDNT 101 (139)
Q Consensus 89 l----L~~gG~ii~~~~ 101 (139)
. ++++|.++.-..
T Consensus 303 ~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 303 VIWRARGINATVAIVAR 319 (404)
T ss_dssp HHHHCSCCCCEEEECSC
T ss_pred HHHhccCCCcEEEEeCC
Confidence 4 499999987544
No 379
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=88.94 E-value=1.1 Score=29.21 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=44.5
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~ 87 (139)
+..+|..||-++......++.++..|+ .+. ...+..+.+..+. .. .+|+|++|..... -.++++.+.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlvl~D~~mp~~~g~~~~~~lr 81 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGH--KVL-CVNGAEQVLDAMA-----EE---DYDAVIVDLHMPGMNGLDMLKQLR 81 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--C--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHh-----cC---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 346899999999999999999988775 243 4567777766553 35 7999999974332 334444443
No 380
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=88.93 E-value=1.3 Score=35.53 Aligned_cols=83 Identities=8% Similarity=-0.021 Sum_probs=51.4
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCC--------------CCcEEEEeCChHHHHHhhHHhhhcccCCCce
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEV--------------DLKINLMESRALPALDQLLKDEKIHFFFENF 67 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~--------------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~f 67 (139)
|+|...+..+.+|+++|++++.++..++. .... ..++++ ..|..+.+ . ..
T Consensus 16 ~lA~~La~~G~~V~~~D~~~~~v~~l~~g--~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~----------~---~a 79 (450)
T 3gg2_A 16 VSATCFAELGANVRCIDTDRNKIEQLNSG--TIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV----------P---EA 79 (450)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHHHT--CSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG----------G---GC
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHHHcC--CCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH----------h---cC
Confidence 34555666678999999999988876652 1100 123333 23443321 3 57
Q ss_pred eEEEEcCCCc----------chHHHHHHHhhcccCCeEEEEeC
Q 044253 68 DYAFVDAHKD----------NYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 68 D~If~D~~~~----------~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
|+||+-.+.. .....++.+.+.|++|.+++...
T Consensus 80 DvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 80 DIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred CEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 9999865433 34566777888888887777544
No 381
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=88.92 E-value=0.77 Score=35.02 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=47.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcc-cCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIH-FFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~-~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
+++|++++.+++..+.+++ .|...-+.....+..+.+.++. . . .+|+||-.... ...++.+.+.
T Consensus 196 Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~-----~~~---~~d~vi~~~g~---~~~~~~~~~~ 260 (347)
T 1jvb_A 196 GATIIGVDVREEAVEAAKR----AGADYVINASMQDPLAEIRRIT-----ESK---GVDAVIDLNNS---EKTLSVYPKA 260 (347)
T ss_dssp CCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-----TTS---CEEEEEESCCC---HHHHTTGGGG
T ss_pred CCeEEEEcCCHHHHHHHHH----hCCCEEecCCCccHHHHHHHHh-----cCC---CceEEEECCCC---HHHHHHHHHH
Confidence 6789999999998888864 3532111111123333233331 2 4 79999876543 3356778899
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 261 l~~~G~iv~~g 271 (347)
T 1jvb_A 261 LAKQGKYVMVG 271 (347)
T ss_dssp EEEEEEEEECC
T ss_pred HhcCCEEEEEC
Confidence 99999998643
No 382
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=88.83 E-value=0.75 Score=35.18 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=47.9
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.++ +|++++.+++..+.+++. .|....+.....+..+.+.+.. .. .+|+||-.... ..++.+.+
T Consensus 184 ~Ga~~Vi~~~~~~~~~~~~~~~---~g~~~~~d~~~~~~~~~~~~~~-----~~---~~d~vi~~~G~----~~~~~~~~ 248 (357)
T 2zb4_A 184 LGCSRVVGICGTHEKCILLTSE---LGFDAAINYKKDNVAEQLRESC-----PA---GVDVYFDNVGG----NISDTVIS 248 (357)
T ss_dssp TTCSEEEEEESCHHHHHHHHHT---SCCSEEEETTTSCHHHHHHHHC-----TT---CEEEEEESCCH----HHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHH---cCCceEEecCchHHHHHHHHhc-----CC---CCCEEEECCCH----HHHHHHHH
Confidence 466 899999998887777542 4542111111223333333321 23 69999876652 46778889
Q ss_pred cccCCeEEEEeC
Q 044253 89 LFKVGGIVIYDN 100 (139)
Q Consensus 89 lL~~gG~ii~~~ 100 (139)
.|+++|.++.-.
T Consensus 249 ~l~~~G~iv~~G 260 (357)
T 2zb4_A 249 QMNENSHIILCG 260 (357)
T ss_dssp TEEEEEEEEECC
T ss_pred HhccCcEEEEEC
Confidence 999999998643
No 383
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.75 E-value=3.3 Score=26.47 Aligned_cols=74 Identities=8% Similarity=0.012 Sum_probs=49.4
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF 90 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL 90 (139)
+|..+|-++......+..++..|+ .+ ....+..+.+..+. .. .+|+|++|.... .-..+++.+...
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~a~~~l~-----~~---~~dlvllD~~l~~~~g~~l~~~l~~~- 73 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPY--DI-FHVETGRDAIQFIE-----RS---KPQLIILDLKLPDMSGEDVLDWINQN- 73 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSS--EE-EEESSHHHHHHHHH-----HH---CCSEEEECSBCSSSBHHHHHHHHHHT-
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCc--eE-EEeCCHHHHHHHHH-----hc---CCCEEEEecCCCCCCHHHHHHHHHhc-
Confidence 799999999999999998877665 24 35667777766553 34 799999996432 234455555443
Q ss_pred cCCe-EEEE
Q 044253 91 KVGG-IVIY 98 (139)
Q Consensus 91 ~~gG-~ii~ 98 (139)
.+.. ++++
T Consensus 74 ~~~~~ii~l 82 (137)
T 3cfy_A 74 DIPTSVIIA 82 (137)
T ss_dssp TCCCEEEEE
T ss_pred CCCCCEEEE
Confidence 3443 4444
No 384
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=88.65 E-value=3.3 Score=26.38 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=50.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
..+|..+|-++......++.++.. ++ .+.....++.+.+..+. .. .+|+|++|.... ....+++.+.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~al~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~ 78 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQM--EIVGSFDDGLDVLKFLQ-----HN---KVDAIFLDINIPSLDGVLLAQNIS 78 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCC--EEEEEESCHHHHHHHHH-----HC---CCSEEEECSSCSSSCHHHHHHHHT
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHH-----hC---CCCEEEEecCCCCCCHHHHHHHHH
Confidence 457999999999999999999876 43 22235677777766553 35 799999997433 2344555554
Q ss_pred hcccCCe-EEEEe
Q 044253 88 TLFKVGG-IVIYD 99 (139)
Q Consensus 88 ~lL~~gG-~ii~~ 99 (139)
.. .+.. ++++.
T Consensus 79 ~~-~~~~~ii~~s 90 (143)
T 2qv0_A 79 QF-AHKPFIVFIT 90 (143)
T ss_dssp TS-TTCCEEEEEE
T ss_pred cc-CCCceEEEEe
Confidence 43 3444 44443
No 385
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=88.45 E-value=1.4 Score=33.93 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=48.3
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.++ +|++++.+++..+.+++ .|...-+.... .+..+.+.+.. .. .+|+||--... ...++.+
T Consensus 214 ~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~t-----~g---g~Dvvid~~g~---~~~~~~~ 278 (373)
T 1p0f_A 214 AGASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEKT-----NG---GVDYAVECAGR---IETMMNA 278 (373)
T ss_dssp HTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT-----TS---CBSEEEECSCC---HHHHHHH
T ss_pred cCCCeEEEECCCHHHHHHHHH----cCCcEEEecccccchHHHHHHHHh-----CC---CCCEEEECCCC---HHHHHHH
Confidence 355 79999999999988864 56531111111 23444444332 24 79999865432 3457788
Q ss_pred hhcccCC-eEEEEeC
Q 044253 87 MTLFKVG-GIVIYDN 100 (139)
Q Consensus 87 ~~lL~~g-G~ii~~~ 100 (139)
.+.|+++ |.++.-.
T Consensus 279 ~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 279 LQSTYCGSGVTVVLG 293 (373)
T ss_dssp HHTBCTTTCEEEECC
T ss_pred HHHHhcCCCEEEEEc
Confidence 8999999 9998644
No 386
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=88.41 E-value=4.4 Score=27.76 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=50.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..||-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|...+ +..++++.+...
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlvl~D~~lp~~~g~~~~~~l~~~ 73 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGF--EVE-TFDCASTFLEHRR-----PE---QHGCLVLDMRMPGMSGIELQEQLTAI 73 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHCC-----TT---SCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCc--eEE-EcCCHHHHHHhhh-----cc---CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4789999999999999999988775 244 5677777776542 34 799999997543 234455555443
Q ss_pred ccCC-eEEEE
Q 044253 90 FKVG-GIVIY 98 (139)
Q Consensus 90 L~~g-G~ii~ 98 (139)
.++ .++++
T Consensus 74 -~~~~~ii~l 82 (208)
T 1yio_A 74 -SDGIPIVFI 82 (208)
T ss_dssp -TCCCCEEEE
T ss_pred -CCCCCEEEE
Confidence 233 34444
No 387
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=88.37 E-value=0.46 Score=37.36 Aligned_cols=56 Identities=7% Similarity=-0.062 Sum_probs=38.1
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh-hHHhhhcccCCCceeEEEEcCCCc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ-LLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~-~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
.|.++|+++.+++..+.|+. ...++++|+.+.... +........ .+|+|+.++++.
T Consensus 26 ~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~---~~D~i~ggpPCQ 82 (376)
T 3g7u_A 26 VKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDM---PIDGIIGGPPCQ 82 (376)
T ss_dssp EEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCC---CCCEEEECCCCC
T ss_pred EEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCC---CeeEEEecCCCC
Confidence 46799999999999998853 357888898765221 110000024 799999998753
No 388
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=88.34 E-value=0.91 Score=36.75 Aligned_cols=85 Identities=6% Similarity=-0.081 Sum_probs=51.8
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHHHHH---HcCC---------CCcEEEEeCChHHHHHhhHHhhhcccCCCceeE
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLPIIK---KVEV---------DLKINLMESRALPALDQLLKDEKIHFFFENFDY 69 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~---~~g~---------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~ 69 (139)
|+|...+..+.+|+++|++++.++..++... .-|+ ..++++ ..|..+.+ . ..|+
T Consensus 22 ~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~----------~---~aDv 87 (478)
T 2y0c_A 22 VTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAV----------A---HGDV 87 (478)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHH----------H---HCSE
T ss_pred HHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHh----------h---cCCE
Confidence 4566667778899999999998887765310 0010 112333 23433322 2 5789
Q ss_pred EEEcCCC----------cchHHHHHHHhhcccCCeEEEEeC
Q 044253 70 AFVDAHK----------DNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 70 If~D~~~----------~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
||+-.+. ......++.+.+.|++|.+++...
T Consensus 88 viiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S 128 (478)
T 2y0c_A 88 QFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS 128 (478)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred EEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 9986543 334556777778898888776543
No 389
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=88.22 E-value=0.82 Score=34.87 Aligned_cols=77 Identities=14% Similarity=-0.003 Sum_probs=48.1
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.++ +|++++.+++..+.+++ .|...-+.....+..+.+.++.. .. .+|+||--... ...++.+.+
T Consensus 190 ~Ga~~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~----g~---g~D~vid~~g~---~~~~~~~~~ 255 (348)
T 2d8a_A 190 SGAYPVIVSEPSDFRRELAKK----VGADYVINPFEEDVVKEVMDITD----GN---GVDVFLEFSGA---PKALEQGLQ 255 (348)
T ss_dssp TTCCSEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHHHHHHHTT----TS---CEEEEEECSCC---HHHHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHH----hCCCEEECCCCcCHHHHHHHHcC----CC---CCCEEEECCCC---HHHHHHHHH
Confidence 456 89999999998888864 35421111112344444433321 24 69999865542 345677889
Q ss_pred cccCCeEEEEeC
Q 044253 89 LFKVGGIVIYDN 100 (139)
Q Consensus 89 lL~~gG~ii~~~ 100 (139)
.|+++|.++.-.
T Consensus 256 ~l~~~G~iv~~g 267 (348)
T 2d8a_A 256 AVTPAGRVSLLG 267 (348)
T ss_dssp HEEEEEEEEECC
T ss_pred HHhcCCEEEEEc
Confidence 999999998643
No 390
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=88.20 E-value=3.2 Score=25.71 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=49.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..+|-++......+..++..|+ .+ ....+..+.+..+. .. ++|+|++|.... ...++++.+...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~--~v-~~~~~~~~a~~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGY--QT-FQAANGLQALDIVT-----KE---RPDLVLLDMKIPGMDGIEILKRMKVI 72 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTC--EE-EEESSHHHHHHHHH-----HH---CCSEEEEESCCTTCCHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCc--EE-EEeCCHHHHHHHHh-----cc---CCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 4789999999999999999987775 24 35667777766553 24 799999997433 233455555443
Q ss_pred ccCCeEEE
Q 044253 90 FKVGGIVI 97 (139)
Q Consensus 90 L~~gG~ii 97 (139)
.+...++
T Consensus 73 -~~~~~ii 79 (124)
T 1srr_A 73 -DENIRVI 79 (124)
T ss_dssp -CTTCEEE
T ss_pred -CCCCCEE
Confidence 3444443
No 391
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=88.18 E-value=3.5 Score=26.14 Aligned_cols=68 Identities=9% Similarity=0.008 Sum_probs=49.3
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
...+|..+|-++......++.++..|+ .+ ....+..+.+..+. .. .+|+|++|.... ....+++.+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~a~~~l~-----~~---~~dlii~d~~l~~~~g~~~~~~l~ 74 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGF--HI-ISADSGGQCIDLLK-----KG---FSGVVLLDIMMPGMDGWDTIRAIL 74 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEESSHHHHHHHHH-----TC---CCEEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCe--EE-EEeCCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 456899999999999999999998876 24 35667777766553 35 799999997533 2344556555
Q ss_pred h
Q 044253 88 T 88 (139)
Q Consensus 88 ~ 88 (139)
.
T Consensus 75 ~ 75 (142)
T 3cg4_A 75 D 75 (142)
T ss_dssp H
T ss_pred h
Confidence 4
No 392
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=88.16 E-value=0.28 Score=34.09 Aligned_cols=61 Identities=8% Similarity=0.067 Sum_probs=39.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEE-EcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAF-VDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If-~D~~~~~~~~~~~~~~~ 88 (139)
.+..|+++|+++.+++ +++.|++....++ -. .||+|+ +.|+..-...+++ +.+
T Consensus 58 ~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~------Y~---~~DLIYsirPP~El~~~i~~-lA~ 111 (153)
T 2k4m_A 58 SKVDLVLTDIKPSHGG----------------IVRDDITSPRMEI------YR---GAALIYSIRPPAEIHSSLMR-VAD 111 (153)
T ss_dssp SCCEEEEECSSCSSTT----------------EECCCSSSCCHHH------HT---TEEEEEEESCCTTTHHHHHH-HHH
T ss_pred CCCeEEEEECCccccc----------------eEEccCCCCcccc------cC---CcCEEEEcCCCHHHHHHHHH-HHH
Confidence 4567999999999888 8888887643332 25 799994 6776544443333 333
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
. -|.-+++
T Consensus 112 ~--v~adliI 119 (153)
T 2k4m_A 112 A--VGARLII 119 (153)
T ss_dssp H--HTCEEEE
T ss_pred H--cCCCEEE
Confidence 2 2444444
No 393
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=88.09 E-value=0.58 Score=35.54 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=47.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+++|++++.+++.++.+++ ..|...-+.+.. .+..+.+.... .. .+|+||-.... ..++.+.+
T Consensus 179 ~G~~V~~~~~~~~~~~~~~~---~~g~~~~~d~~~~~~~~~~~~~~~-----~~---~~d~vi~~~g~----~~~~~~~~ 243 (345)
T 2j3h_A 179 MGCYVVGSAGSKEKVDLLKT---KFGFDDAFNYKEESDLTAALKRCF-----PN---GIDIYFENVGG----KMLDAVLV 243 (345)
T ss_dssp TTCEEEEEESSHHHHHHHHH---TSCCSEEEETTSCSCSHHHHHHHC-----TT---CEEEEEESSCH----HHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHH---HcCCceEEecCCHHHHHHHHHHHh-----CC---CCcEEEECCCH----HHHHHHHH
Confidence 46789999999988887763 235421111111 23444444331 24 69999876542 36778889
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
.|+++|.++.-
T Consensus 244 ~l~~~G~~v~~ 254 (345)
T 2j3h_A 244 NMNMHGRIAVC 254 (345)
T ss_dssp TEEEEEEEEEC
T ss_pred HHhcCCEEEEE
Confidence 99999999864
No 394
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=87.91 E-value=0.48 Score=36.51 Aligned_cols=77 Identities=14% Similarity=-0.005 Sum_probs=49.5
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe-CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME-SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~-~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+++|++++.+++.++.+++ .|...-+. .. .+..+.+.++.. .. .+|+||--.... .++.+.+
T Consensus 212 ~Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~-~~~~~~~~~v~~~~~----g~---g~D~vid~~g~~----~~~~~~~ 275 (363)
T 3uog_A 212 TGAEVIVTSSSREKLDRAFA----LGADHGIN-RLEEDWVERVYALTG----DR---GADHILEIAGGA----GLGQSLK 275 (363)
T ss_dssp TTCEEEEEESCHHHHHHHHH----HTCSEEEE-TTTSCHHHHHHHHHT----TC---CEEEEEEETTSS----CHHHHHH
T ss_pred cCCEEEEEecCchhHHHHHH----cCCCEEEc-CCcccHHHHHHHHhC----CC---CceEEEECCChH----HHHHHHH
Confidence 46799999999998888765 46532122 11 344444444321 34 799998655422 3566788
Q ss_pred cccCCeEEEEeCCC
Q 044253 89 LFKVGGIVIYDNTL 102 (139)
Q Consensus 89 lL~~gG~ii~~~~~ 102 (139)
.|+++|.++.-...
T Consensus 276 ~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 276 AVAPDGRISVIGVL 289 (363)
T ss_dssp HEEEEEEEEEECCC
T ss_pred HhhcCCEEEEEecC
Confidence 99999999875443
No 395
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=87.91 E-value=1 Score=34.94 Aligned_cols=80 Identities=13% Similarity=0.043 Sum_probs=49.3
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCC-hHHHHHhhHHhhhcccCCCceeEEEEcCCCcc---------
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLMESR-ALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--------- 78 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~d-a~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--------- 78 (139)
.++ +|+++|.+++.++.+++ .|. +-+.....+ ..+.+.++.. .. .+|+||--.....
T Consensus 208 ~Ga~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~v~~~t~----g~---g~Dvvid~~G~~~~~~~~~~~~ 275 (398)
T 1kol_A 208 LGAAVVIVGDLNPARLAHAKA----QGF-EIADLSLDTPLHEQIAALLG----EP---EVDCAVDAVGFEARGHGHEGAK 275 (398)
T ss_dssp TTCSEEEEEESCHHHHHHHHH----TTC-EEEETTSSSCHHHHHHHHHS----SS---CEEEEEECCCTTCBCSSTTGGG
T ss_pred CCCCeEEEEcCCHHHHHHHHH----cCC-cEEccCCcchHHHHHHHHhC----CC---CCCEEEECCCCccccccccccc
Confidence 355 69999999999988864 465 222211222 3334443321 24 6999986543221
Q ss_pred ---hHHHHHHHhhcccCCeEEEEeCC
Q 044253 79 ---YRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 79 ---~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
....++.+++.|+++|.++.-..
T Consensus 276 ~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 276 HEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp SBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred ccchHHHHHHHHHHHhcCCEEEEecc
Confidence 12367788899999999986543
No 396
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=87.71 E-value=3.8 Score=26.07 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=51.6
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..+|-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|.... ....+++.+..
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~---~~dlvllD~~l~~~~g~~l~~~l~~ 72 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGI--SID-LAYNCEEAIGKIF-----SN---KYDLIFLEIILSDGDGWTLCKKIRN 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HC---CCSEEEEESEETTEEHHHHHHHHHT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHcc
Confidence 35789999999999999999987775 343 5677777776553 35 799999997432 23445555554
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
.- .-.++++.
T Consensus 73 ~~-~~~ii~ls 82 (136)
T 2qzj_A 73 VT-TCPIVYMT 82 (136)
T ss_dssp TC-CCCEEEEE
T ss_pred CC-CCCEEEEE
Confidence 32 33455553
No 397
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=87.57 E-value=3.4 Score=25.25 Aligned_cols=76 Identities=14% Similarity=0.022 Sum_probs=49.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..+|-++......+..+...|+ .+. ...+..+.+..+. .. .+|+|++|.... ...++++.+.+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~- 69 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGY--EVV-TAFNGREALEQFE-----AE---QPDIIILDLMLPEIDGLEVAKTIRK- 69 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HH---CCSEEEECSSCSSSCHHHHHHHHHH-
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHHH-----hC---CCCEEEEeccCCCCCHHHHHHHHHh-
Confidence 3688999999999999999988776 243 5667777766553 34 799999997433 22344555544
Q ss_pred ccCCeEEEEe
Q 044253 90 FKVGGIVIYD 99 (139)
Q Consensus 90 L~~gG~ii~~ 99 (139)
...-.++++.
T Consensus 70 ~~~~~ii~~s 79 (120)
T 2a9o_A 70 TSSVPILMLS 79 (120)
T ss_dssp HCCCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 2333445543
No 398
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=87.53 E-value=3.8 Score=25.86 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=50.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..+|-++......+..++..|.. .......+..+.+..+. .. .+|+|++|.... .-.++++.+...
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~-~~v~~~~~~~~al~~~~-----~~---~~dlvilD~~lp~~~g~~~~~~l~~~ 74 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDF-EILADTDNGLDAMKLIE-----EY---NPNVVILDIEMPGMTGLEVLAEIRKK 74 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSE-EEEEEESCHHHHHHHHH-----HH---CCSEEEECSSCSSSCHHHHHHHHHHT
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCc-EEEEEcCCHHHHHHHHh-----hc---CCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 47899999999999999998876521 23344667777766553 34 799999997543 234455555543
Q ss_pred ccCCeE-EEE
Q 044253 90 FKVGGI-VIY 98 (139)
Q Consensus 90 L~~gG~-ii~ 98 (139)
.++.. +++
T Consensus 75 -~~~~~ii~l 83 (133)
T 3b2n_A 75 -HLNIKVIIV 83 (133)
T ss_dssp -TCSCEEEEE
T ss_pred -CCCCcEEEE
Confidence 34444 444
No 399
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=87.52 E-value=1.6 Score=33.59 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=47.9
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.++ +|++++.+++..+.+++ .|...-+.... .+..+.+.++. .. .+|+||--... ...++.+
T Consensus 214 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~-----~~---g~D~vid~~g~---~~~~~~~ 278 (374)
T 2jhf_A 214 AGAARIIGVDINKDKFAKAKE----VGATECVNPQDYKKPIQEVLTEMS-----NG---GVDFSFEVIGR---LDTMVTA 278 (374)
T ss_dssp TTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT-----TS---CBSEEEECSCC---HHHHHHH
T ss_pred cCCCeEEEEcCCHHHHHHHHH----hCCceEecccccchhHHHHHHHHh-----CC---CCcEEEECCCC---HHHHHHH
Confidence 355 79999999999988864 46521111111 23444444332 24 69998765432 3456778
Q ss_pred hhcccCC-eEEEEeC
Q 044253 87 MTLFKVG-GIVIYDN 100 (139)
Q Consensus 87 ~~lL~~g-G~ii~~~ 100 (139)
.+.|+++ |.++.-.
T Consensus 279 ~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 279 LSCCQEAYGVSVIVG 293 (374)
T ss_dssp HHHBCTTTCEEEECS
T ss_pred HHHhhcCCcEEEEec
Confidence 8999999 9998644
No 400
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=87.45 E-value=3.5 Score=25.36 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=49.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l 89 (139)
.+|..+|-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|..... -..+++.+.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~~- 70 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGY--TVS-VTASGAGLREIMQ-----NQ---SVDLILLDINLPDENGLMLTRALRE- 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHHT-
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCC--eEE-EecCHHHHHHHHh-----cC---CCCEEEEeCCCCCCChHHHHHHHHh-
Confidence 4688999999999999999988775 243 4566666665443 35 7999999975432 3345555554
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
...-.++++
T Consensus 71 ~~~~~ii~~ 79 (122)
T 1zgz_A 71 RSTVGIILV 79 (122)
T ss_dssp TCCCEEEEE
T ss_pred cCCCCEEEE
Confidence 223334444
No 401
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=87.41 E-value=3.8 Score=25.73 Aligned_cols=76 Identities=12% Similarity=-0.048 Sum_probs=50.1
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~l 89 (139)
.+|..+|-++......+..+...|+ .+. ...+..+.+..+. .. .+|+|++|..... -..+++.+...
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGY--DVI-TASDGEEALKKAE-----TE---KPDLIVLDVMLPKLDGIEVCKQLRQQ 72 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HH---CCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCc--EEE-EecCHHHHHHHHh-----hc---CCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 5789999999999999999988776 243 5667777766543 34 7999999975432 33455555443
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
-..-.++++
T Consensus 73 ~~~~~ii~~ 81 (136)
T 1mvo_A 73 KLMFPILML 81 (136)
T ss_dssp TCCCCEEEE
T ss_pred CCCCCEEEE
Confidence 222234444
No 402
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=87.37 E-value=3.7 Score=25.53 Aligned_cols=68 Identities=4% Similarity=-0.053 Sum_probs=46.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
..+|..+|-++......+..++..|+. . .....+..+.+..+. .. .+|+|++|...+. -.++++.+..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~-~-v~~~~~~~~a~~~~~-----~~---~~dlvl~D~~l~~~~g~~~~~~l~~ 75 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFK-Q-ITAAGDGEQGMKIMA-----QN---PHHLVISDFNMPKMDGLGLLQAVRA 75 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCS-C-EECCSSHHHHHHHHH-----TS---CCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCc-E-EEecCCHHHHHHHHH-----cC---CCCEEEEeCCCCCCCHHHHHHHHhc
Confidence 357999999999999999999877752 2 334556777765543 35 7999999975432 2344555543
No 403
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=87.32 E-value=1.1 Score=34.23 Aligned_cols=76 Identities=9% Similarity=-0.026 Sum_probs=47.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|...-+.....+..+.+.+... .. .+|+||-..... .+..+.+.
T Consensus 186 ~Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~~---~~d~vi~~~G~~----~~~~~~~~ 250 (354)
T 2j8z_A 186 AGAIPLVTAGSQKKLQMAEK----LGAAAGFNYKKEDFSEATLKFTK----GA---GVNLILDCIGGS----YWEKNVNC 250 (354)
T ss_dssp TTCEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTT----TS---CEEEEEESSCGG----GHHHHHHH
T ss_pred cCCEEEEEeCCHHHHHHHHH----cCCcEEEecCChHHHHHHHHHhc----CC---CceEEEECCCch----HHHHHHHh
Confidence 46789999999998888753 35421111112233333333211 24 699998776542 35667789
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 251 l~~~G~iv~~G 261 (354)
T 2j8z_A 251 LALDGRWVLYG 261 (354)
T ss_dssp EEEEEEEEECC
T ss_pred ccCCCEEEEEe
Confidence 99999998744
No 404
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=87.23 E-value=2.8 Score=27.50 Aligned_cols=75 Identities=8% Similarity=-0.119 Sum_probs=47.6
Q ss_pred hhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 9 FFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 9 ~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
..+.+|+.+|.+++.++.+++ .| +.++.+|+.+. +.+.. -. .+|+|++-.+.......+-..
T Consensus 28 ~~g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~-----i~---~ad~vi~~~~~~~~n~~~~~~ 91 (140)
T 3fwz_A 28 ASDIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAH-----LE---CAKWLILTIPNGYEAGEIVAS 91 (140)
T ss_dssp HTTCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTT-----GG---GCSEEEECCSCHHHHHHHHHH
T ss_pred HCCCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcC-----cc---cCCEEEEECCChHHHHHHHHH
Confidence 346789999999998887764 23 56788887643 33321 24 799999876533222222234
Q ss_pred hhcccCCeEEEEe
Q 044253 87 MTLFKVGGIVIYD 99 (139)
Q Consensus 87 ~~lL~~gG~ii~~ 99 (139)
.+.+.++..+++.
T Consensus 92 a~~~~~~~~iiar 104 (140)
T 3fwz_A 92 ARAKNPDIEIIAR 104 (140)
T ss_dssp HHHHCSSSEEEEE
T ss_pred HHHHCCCCeEEEE
Confidence 4666777777763
No 405
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=87.20 E-value=1.9 Score=33.09 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=48.6
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.++ +|++++.+++..+.+++ .|...-+.... .+..+.+.++. .. .+|+||--... ...++.+
T Consensus 213 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~v~~~~-----~~---g~D~vid~~g~---~~~~~~~ 277 (373)
T 2fzw_A 213 AGASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEMT-----DG---GVDYSFECIGN---VKVMRAA 277 (373)
T ss_dssp HTCSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHT-----TS---CBSEEEECSCC---HHHHHHH
T ss_pred cCCCeEEEEcCCHHHHHHHHH----cCCceEeccccccccHHHHHHHHh-----CC---CCCEEEECCCc---HHHHHHH
Confidence 355 79999999999998874 35421111111 23444444432 24 69999865432 3457788
Q ss_pred hhcccCC-eEEEEeCC
Q 044253 87 MTLFKVG-GIVIYDNT 101 (139)
Q Consensus 87 ~~lL~~g-G~ii~~~~ 101 (139)
++.|+++ |.++.-..
T Consensus 278 ~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 278 LEACHKGWGVSVVVGV 293 (373)
T ss_dssp HHTBCTTTCEEEECSC
T ss_pred HHhhccCCcEEEEEec
Confidence 8999999 99986443
No 406
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}
Probab=86.94 E-value=0.6 Score=35.56 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=47.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|...-+.....+..+.+.+... .. .+|+||-.... . .++.+.+.
T Consensus 190 ~G~~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~~----~~---~~d~vi~~~g~-~---~~~~~~~~ 254 (343)
T 2eih_A 190 FGARVIATAGSEDKLRRAKA----LGADETVNYTHPDWPKEVRRLTG----GK---GADKVVDHTGA-L---YFEGVIKA 254 (343)
T ss_dssp TTCEEEEEESSHHHHHHHHH----HTCSEEEETTSTTHHHHHHHHTT----TT---CEEEEEESSCS-S---SHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHhC----CC---CceEEEECCCH-H---HHHHHHHh
Confidence 46789999999999888864 35421111112233333333211 24 79999876652 2 35667789
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 255 l~~~G~~v~~g 265 (343)
T 2eih_A 255 TANGGRIAIAG 265 (343)
T ss_dssp EEEEEEEEESS
T ss_pred hccCCEEEEEe
Confidence 99999998643
No 407
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=86.84 E-value=4 Score=25.34 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=47.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
..+|..+|-++......+..++..|+. ......+..+.+..+. .. .+|+|++|...+. -.++++.+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~--~v~~~~~~~~a~~~~~-----~~---~~dlvi~D~~l~~~~g~~l~~~l~~ 73 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQ-----AG---GYGFVISDWNMPNMDGLELLKTIRA 73 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESSHHHHHHHHT-----TC---CCCEEEEESCCSSSCHHHHHHHHHC
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCc--EEEeeCCHHHHHHHHH-----hc---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 357899999999999999999887762 2334567777766553 35 7999999975432 3344555543
No 408
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=86.74 E-value=2.1 Score=32.76 Aligned_cols=79 Identities=11% Similarity=-0.029 Sum_probs=48.0
Q ss_pred hhcc-eeEEeCCccHHHHHHHHHHHcCCCCcEEEEe--CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 10 FIYF-IVAIDVSRESSETGLPIIKKVEVDLKINLME--SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 10 ~~~~-v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~--~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.+++ |++++.+++..+.+++. . ..-+.+.. .+..++...+....+ .. .+|+||--... ...++.+
T Consensus 202 ~Ga~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~t~-g~---g~Dvvid~~g~---~~~~~~~ 269 (363)
T 3m6i_A 202 AGACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVESFG-GI---EPAVALECTGV---ESSIAAA 269 (363)
T ss_dssp TTCCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHHHTS-SC---CCSEEEECSCC---HHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHHHhC-CC---CCCEEEECCCC---hHHHHHH
Confidence 3555 99999999999999875 1 12233321 122333222221111 24 79999865442 3356778
Q ss_pred hhcccCCeEEEEeC
Q 044253 87 MTLFKVGGIVIYDN 100 (139)
Q Consensus 87 ~~lL~~gG~ii~~~ 100 (139)
.+.|+++|.++.-.
T Consensus 270 ~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 270 IWAVKFGGKVFVIG 283 (363)
T ss_dssp HHHSCTTCEEEECC
T ss_pred HHHhcCCCEEEEEc
Confidence 89999999998744
No 409
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=86.73 E-value=1.7 Score=32.48 Aligned_cols=56 Identities=7% Similarity=0.045 Sum_probs=45.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
.+|..+|-++......+..++..|+ .+.....|..+.+..+. .. +||+|++|...+
T Consensus 161 ~rILvVdD~~~~~~~l~~~L~~~g~--~v~~~a~~g~eAl~~~~-----~~---~~dlvl~D~~MP 216 (286)
T 3n0r_A 161 TEVLIIEDEPVIAADIEALVRELGH--DVTDIAATRGEALEAVT-----RR---TPGLVLADIQLA 216 (286)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HC---CCSEEEEESCCT
T ss_pred CcEEEEcCCHHHHHHHHHHhhccCc--eEEEEeCCHHHHHHHHH-----hC---CCCEEEEcCCCC
Confidence 4689999999999999999999986 24436788888887664 35 899999996443
No 410
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=86.64 E-value=3.6 Score=31.69 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=46.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|.. .++...-.+.+.++ .. .+|+||--..... .++.+.+.
T Consensus 217 ~Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~------~~---g~Dvvid~~g~~~---~~~~~~~~ 277 (369)
T 1uuf_A 217 MGAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH------LK---SFDFILNTVAAPH---NLDDFTTL 277 (369)
T ss_dssp TTCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT------TT---CEEEEEECCSSCC---CHHHHHTT
T ss_pred CCCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHh------hc---CCCEEEECCCCHH---HHHHHHHH
Confidence 46789999999999998875 4542 22322222333333 24 7999986544321 25567899
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 278 l~~~G~iv~~G 288 (369)
T 1uuf_A 278 LKRDGTMTLVG 288 (369)
T ss_dssp EEEEEEEEECC
T ss_pred hccCCEEEEec
Confidence 99999998643
No 411
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=86.59 E-value=1.5 Score=28.32 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=48.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHc-CCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKV-EVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~-g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
.+|..+|-++......++.++.. |+ .+.....+..+.+..+.. .. .+|+|++|..... -..+++.+..
T Consensus 14 ~~vlivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~al~~l~~----~~---~~dlvilD~~l~~~~g~~~~~~lr~ 84 (145)
T 3kyj_B 14 YNVMIVDDAAMMRLYIASFIKTLPDF--KVVAQAANGQEALDKLAA----QP---NVDLILLDIEMPVMDGMEFLRHAKL 84 (145)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTE--EEEEEESSHHHHHHHHHH----CT---TCCEEEECTTSCCCTTCHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEECCHHHHHHHHhc----CC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 46999999999999999998876 33 222357788887765532 23 5999999974322 2334554443
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
. .+..++++
T Consensus 85 ~-~~~~iiil 93 (145)
T 3kyj_B 85 K-TRAKICML 93 (145)
T ss_dssp H-CCCEEC-C
T ss_pred c-CCCCeEEE
Confidence 2 23444444
No 412
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=86.57 E-value=0.9 Score=34.87 Aligned_cols=76 Identities=14% Similarity=0.085 Sum_probs=46.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++.++.+++ .|...-+.....+..+.+.+... .. .+|+||-.... ..+..+.+.
T Consensus 194 ~Ga~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~~----~~---~~D~vi~~~G~----~~~~~~~~~ 258 (351)
T 1yb5_A 194 YGLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYVG----EK---GIDIIIEMLAN----VNLSKDLSL 258 (351)
T ss_dssp TTCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHHC----TT---CEEEEEESCHH----HHHHHHHHH
T ss_pred CCCEEEEEeCChhHHHHHHH----cCCCEEEeCCCchHHHHHHHHcC----CC---CcEEEEECCCh----HHHHHHHHh
Confidence 46789999999988886653 45421111112233333333211 24 69999876542 246677899
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 259 l~~~G~iv~~g 269 (351)
T 1yb5_A 259 LSHGGRVIVVG 269 (351)
T ss_dssp EEEEEEEEECC
T ss_pred ccCCCEEEEEe
Confidence 99999998643
No 413
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=86.52 E-value=1.8 Score=27.73 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=46.0
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
..+|..+|-++......+..++..|. .+. ...+..+.+..+. .. .+|+|++|.... +-..+++.+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~al~~l~-----~~---~~dlvllD~~lp~~~g~~~~~~l~ 77 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTN--DIT-VVTNGLQALQAYQ-----NR---QFDVIIMDIQMPVMDGLEAVSEIR 77 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCS--EEE-EESSHHHHHHHHH-----HS---CCSEEEECTTCCSSCHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCC--ceE-EECCHHHHHHHHh-----cC---CCCEEEEeCCCCCCcHHHHHHHHH
Confidence 35799999999999999999887664 243 4577777776553 35 799999997433 2234444444
No 414
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=86.50 E-value=2.3 Score=26.31 Aligned_cols=65 Identities=9% Similarity=0.003 Sum_probs=45.4
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
+|..+|-++......+..++..|+. +. ...+..+.+..+. .. .+|+|++|.... ....+++.+..
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~--v~-~~~~~~~a~~~~~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~ 69 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYE--TL-QTREGLSALSIAR-----EN---KPDLILMDIQLPEISGLEVTKWLKE 69 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESCHHHHHHHHH-----HH---CCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcE--EE-EeCCHHHHHHHHh-----cC---CCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 6888999999999999999987762 33 4567777765543 34 799999996433 22344555543
No 415
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=86.38 E-value=4.6 Score=25.59 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=48.5
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhh-hcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDE-KIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~-~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
..+|..+|-++......++.++..|....+. ...+..+.+..+.... .... .+|+|++|.... ....+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~-~~~~~~~a~~~l~~~~~~~~~---~~dlii~D~~l~~~~g~~~~~~l~ 82 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIE-IAKSGNQALDMLYGRNKENKI---HPKLILLDINIPKMNGIEFLKELR 82 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHTCTTCCCC---CCSEEEEETTCTTSCHHHHHHHHT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEE-EECCHHHHHHHHHhcccccCC---CCCEEEEecCCCCCCHHHHHHHHH
Confidence 3579999999999999999999888632343 4566777766553100 0004 799999997433 2334555554
Q ss_pred h
Q 044253 88 T 88 (139)
Q Consensus 88 ~ 88 (139)
.
T Consensus 83 ~ 83 (143)
T 2qvg_A 83 D 83 (143)
T ss_dssp T
T ss_pred c
Confidence 4
No 416
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=86.30 E-value=3.7 Score=28.87 Aligned_cols=77 Identities=9% Similarity=-0.047 Sum_probs=50.4
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..||-++......+..++..|-. .+.....+..+.+..+. .. .+|+|++|...+ +...+++.+...
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~-~vv~~~~~~~~al~~l~-----~~---~~dlvllD~~lp~~~g~~~~~~lr~~ 72 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPEL-DVVGEAGSVAEAMARVP-----AA---RPDVAVLDVRLPDGNGIELCRDLLSR 72 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTE-EEEEEESSHHHHHHHHH-----HH---CCSEEEECSEETTEEHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEECCHHHHHHHHh-----hc---CCCEEEEeCCCCCCCHHHHHHHHHHh
Confidence 36889999999999999999876511 12234677777776553 34 799999997432 334455555443
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
.++..+++
T Consensus 73 -~~~~~ii~ 80 (225)
T 3c3w_A 73 -MPDLRCLI 80 (225)
T ss_dssp -CTTCEEEE
T ss_pred -CCCCcEEE
Confidence 45555554
No 417
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=86.24 E-value=0.66 Score=35.99 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=47.1
Q ss_pred hh-cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCC---hHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253 10 FI-YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESR---ALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85 (139)
Q Consensus 10 ~~-~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~d---a~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~ 85 (139)
.+ ++|++++.+++..+.+++ .|.. .++..+ -.++...+....+ .. .+|+||--... ...++.
T Consensus 218 ~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~~~-g~---g~Dvvid~~g~---~~~~~~ 283 (380)
T 1vj0_A 218 LGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDITH-GR---GADFILEATGD---SRALLE 283 (380)
T ss_dssp TTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHHTT-TS---CEEEEEECSSC---TTHHHH
T ss_pred cCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHHhC-CC---CCcEEEECCCC---HHHHHH
Confidence 35 599999999998888763 5652 233322 2222222211100 24 69999865432 224667
Q ss_pred HhhcccCCeEEEEeCC
Q 044253 86 LMTLFKVGGIVIYDNT 101 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~ 101 (139)
+.+.|+++|.++.-..
T Consensus 284 ~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 284 GSELLRRGGFYSVAGV 299 (380)
T ss_dssp HHHHEEEEEEEEECCC
T ss_pred HHHHHhcCCEEEEEec
Confidence 7899999999986443
No 418
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=86.07 E-value=0.86 Score=29.11 Aligned_cols=54 Identities=2% Similarity=-0.119 Sum_probs=40.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcC-CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVE-VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g-~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
..+|..+|-++......+..++..| + .+. ...+..+.+..+. .. ++|+|++|..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~--~v~-~~~~~~~a~~~l~-----~~---~~dlvi~D~~ 68 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIY--DVR-VSETDDFLKGPPA-----DT---RPGIVILDLG 68 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSE--EEE-EECGGGGGGCCCT-----TC---CCSEEEEEEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCe--EEE-EeccHHHHHHHHh-----cc---CCCEEEEeCC
Confidence 3579999999999999999999887 5 233 4556666554442 35 7999999963
No 419
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=86.00 E-value=4.3 Score=24.86 Aligned_cols=76 Identities=12% Similarity=-0.077 Sum_probs=49.5
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF 90 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL 90 (139)
+|..+|-++......++.++..|+ .+. ...+..+.+..+. .. .+|+|++|.... .-.++++.+...-
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlil~D~~l~~~~g~~~~~~l~~~~ 70 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGH--QVD-DAEDAKEADYYLN-----EH---IPDIAIVDLGLPDEDGLSLIRRWRSND 70 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEECSCCSSSCHHHHHHHHHHTT
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCC--EEE-EeCCHHHHHHHHh-----cc---CCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 578899999999999999988775 233 5566777665543 35 799999997543 2334555554433
Q ss_pred cCCeEEEEe
Q 044253 91 KVGGIVIYD 99 (139)
Q Consensus 91 ~~gG~ii~~ 99 (139)
..-.++++.
T Consensus 71 ~~~~ii~~s 79 (121)
T 2pl1_A 71 VSLPILVLT 79 (121)
T ss_dssp CCSCEEEEE
T ss_pred CCCCEEEEe
Confidence 333455543
No 420
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=85.96 E-value=4.5 Score=25.12 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=51.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..+|-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|...+ .-..+++.+..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~~~~~~~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~ 71 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGF--AVK-MHQSAEAFLAFAP-----DV---RNGVLVTDLRMPDMSGVELLRNLGD 71 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHGG-----GC---CSEEEEEECCSTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCc--EEE-EeCCHHHHHHHHh-----cC---CCCEEEEECCCCCCCHHHHHHHHHh
Confidence 35789999999999999999988776 243 5667777766543 35 799999997433 23345555544
Q ss_pred cccCC-eEEEEe
Q 044253 89 LFKVG-GIVIYD 99 (139)
Q Consensus 89 lL~~g-G~ii~~ 99 (139)
. .++ .++++.
T Consensus 72 ~-~~~~~ii~~s 82 (126)
T 1dbw_A 72 L-KINIPSIVIT 82 (126)
T ss_dssp T-TCCCCEEEEE
T ss_pred c-CCCCCEEEEE
Confidence 3 344 344443
No 421
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=85.86 E-value=2.6 Score=32.70 Aligned_cols=81 Identities=4% Similarity=-0.117 Sum_probs=51.9
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHH------HcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIK------KVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~------~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
|...+..+.+|+.++++++.++..++.-. ...+.+++++ ..|..+.+ . ..|+||+-.+..
T Consensus 45 A~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea~----------~---~aDvVilaVp~~ 110 (356)
T 3k96_A 45 ALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKASL----------E---GVTDILIVVPSF 110 (356)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHHH----------T---TCCEEEECCCHH
T ss_pred HHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHHH----------h---cCCEEEECCCHH
Confidence 33445556789999999988777665311 1112223443 23444332 3 689999987665
Q ss_pred chHHHHHHHhhcccCCeEEEE
Q 044253 78 NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.....++.+.+.++++.+++.
T Consensus 111 ~~~~vl~~i~~~l~~~~ivvs 131 (356)
T 3k96_A 111 AFHEVITRMKPLIDAKTRIAW 131 (356)
T ss_dssp HHHHHHHHHGGGCCTTCEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEE
Confidence 667778888889988887664
No 422
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=85.77 E-value=4.1 Score=29.26 Aligned_cols=66 Identities=11% Similarity=0.034 Sum_probs=47.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch--HHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY--RNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~--~~~~~~~~~ 88 (139)
.+|..||-++...+..+..++..|+ ......+..+.+..+. .. .+|+|++|...+.. .++++.+..
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~~~~~~al~~~~-----~~---~~DlvllD~~lp~~~G~~l~~~lr~ 105 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTDAGY---VVDHADSAMNGLIKAR-----ED---HPDLILLDLGLPDFDGGDVVQRLRK 105 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTC---EEEEESSHHHHHHHHH-----HS---CCSEEEEECCSCHHHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCC---EEEEeCCHHHHHHHHh-----cC---CCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 4799999999999999999987775 2345677777776553 35 79999999865432 334444444
No 423
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=85.73 E-value=4.5 Score=24.88 Aligned_cols=75 Identities=9% Similarity=0.065 Sum_probs=49.5
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..+|-++......+..++..|+ .+ ....+..+.+..+. .. .+|+|++|.... .-..+++.+...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~--~v-~~~~~~~~a~~~~~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~~ 72 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGY--DV-FEATDGAEMHQILS-----EY---DINLVIMDINLPGKNGLLLARELREQ 72 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTC--EE-EEESSHHHHHHHHH-----HS---CCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCc--EE-EEeCCHHHHHHHHh-----cC---CCCEEEEcCCCCCCCHHHHHHHHHhC
Confidence 4688999999999999999987776 24 35667777766543 35 799999997433 233455555443
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
..-.++++
T Consensus 73 -~~~~ii~~ 80 (123)
T 1xhf_A 73 -ANVALMFL 80 (123)
T ss_dssp -CCCEEEEE
T ss_pred -CCCcEEEE
Confidence 23334444
No 424
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=85.68 E-value=1.7 Score=33.07 Aligned_cols=72 Identities=11% Similarity=-0.051 Sum_probs=46.8
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|+++ .+++.++.+++ .|... +. ...+..+.+.+... .. .+|+||-.... ..++.+.+.
T Consensus 174 ~Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~~----~~---g~D~vid~~g~----~~~~~~~~~ 235 (343)
T 3gaz_A 174 RGARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHTA----GQ---GFDLVYDTLGG----PVLDASFSA 235 (343)
T ss_dssp TTCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHHT----TS---CEEEEEESSCT----HHHHHHHHH
T ss_pred CCCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHhc----CC---CceEEEECCCc----HHHHHHHHH
Confidence 46789999 88888777754 46532 33 33344444443321 24 79988765542 357778889
Q ss_pred ccCCeEEEEe
Q 044253 90 FKVGGIVIYD 99 (139)
Q Consensus 90 L~~gG~ii~~ 99 (139)
|+++|.++.-
T Consensus 236 l~~~G~iv~~ 245 (343)
T 3gaz_A 236 VKRFGHVVSC 245 (343)
T ss_dssp EEEEEEEEES
T ss_pred HhcCCeEEEE
Confidence 9999999864
No 425
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=85.61 E-value=4.2 Score=24.43 Aligned_cols=67 Identities=13% Similarity=0.016 Sum_probs=47.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..+|-++...+..++.++..|+ ++. ...+..+.+..+. .. .+|+|++|.... ....+++.+...
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~~~~l~-----~~---~~dlii~d~~~~~~~~~~~~~~l~~~ 70 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGF--KVI-WLVDGSTALDQLD-----LL---QPIVILMAWPPPDQSCLLLLQHLREH 70 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HH---CCSEEEEECSTTCCTHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCc--EEE-EecCHHHHHHHHH-----hc---CCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 3688899999999999999998886 344 4567777766553 34 799999997433 234455555443
No 426
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=85.52 E-value=6.4 Score=27.09 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=50.2
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..||-++......+..++..+- -.+.....++.+.+..+. .. .+|+|++|...+ +-..+++.+..
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~-~~vv~~~~~~~~al~~~~-----~~---~~dlvllD~~lp~~~g~~~~~~lr~ 75 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPD-ITVVGEASNGEQGIELAE-----SL---DPDLILLDLNMPGMNGLETLDKLRE 75 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTT-EEEEEEESSHHHHHHHHH-----HH---CCSEEEEETTSTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHH-----hc---CCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 45799999999999999888876531 123235677777776553 34 799999997543 23445555554
Q ss_pred cccCCeEEEE
Q 044253 89 LFKVGGIVIY 98 (139)
Q Consensus 89 lL~~gG~ii~ 98 (139)
.-..-.++++
T Consensus 76 ~~~~~~ii~l 85 (215)
T 1a04_A 76 KSLSGRIVVF 85 (215)
T ss_dssp SCCCSEEEEE
T ss_pred hCCCCcEEEE
Confidence 4222334444
No 427
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=85.35 E-value=1.4 Score=33.21 Aligned_cols=73 Identities=12% Similarity=0.065 Sum_probs=43.8
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCCh-HHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRA-LPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da-~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+++|++++.+++.++.+++ .|.. .+ +-..+. .+.+..+. .. .+|+||-..... .++.+.+
T Consensus 173 ~Ga~vi~~~~~~~~~~~~~~----lGa~-~~-i~~~~~~~~~~~~~~-----~~---~~d~vid~~g~~----~~~~~~~ 234 (328)
T 1xa0_A 173 RGYTVEASTGKAAEHDYLRV----LGAK-EV-LAREDVMAERIRPLD-----KQ---RWAAAVDPVGGR----TLATVLS 234 (328)
T ss_dssp TTCCEEEEESCTTCHHHHHH----TTCS-EE-EECC---------CC-----SC---CEEEEEECSTTT----THHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHH----cCCc-EE-EecCCcHHHHHHHhc-----CC---cccEEEECCcHH----HHHHHHH
Confidence 46789999999998888864 4643 21 111121 12222221 24 799987654432 4667789
Q ss_pred cccCCeEEEEeC
Q 044253 89 LFKVGGIVIYDN 100 (139)
Q Consensus 89 lL~~gG~ii~~~ 100 (139)
.|+++|.++.-.
T Consensus 235 ~l~~~G~~v~~G 246 (328)
T 1xa0_A 235 RMRYGGAVAVSG 246 (328)
T ss_dssp TEEEEEEEEECS
T ss_pred hhccCCEEEEEe
Confidence 999999998644
No 428
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=85.25 E-value=6.3 Score=27.40 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=47.3
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
.+|..||-++...+..+..++..|+. +. ...+..+.+..+. .. .+|+|++|...+ +..++++.+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~-----~~---~~dlvllD~~l~~~~g~~~~~~l~~ 72 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFE--AT-VVTDGPAALAEFD-----RA---GADIVLLDLMLPGMSGTDVCKQLRA 72 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EECSHHHHHHHHH-----HH---CCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHh-----cc---CCCEEEEECCCCCCCHHHHHHHHHc
Confidence 57999999999999999999887762 43 5667777766553 34 799999997433 23445555554
No 429
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=84.99 E-value=4.8 Score=25.51 Aligned_cols=66 Identities=18% Similarity=0.062 Sum_probs=43.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
..+|..+|-++......++.++.. + .+. ...+..+.+..+. .. ++|+|++|..... ...+++.+..
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~--~v~-~~~~~~~a~~~~~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~ 70 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-Y--LVI-ESKNEKEALEQID-----HH---HPDLVILDMDIIGENSPNLCLKLKR 70 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-S--EEE-EESSHHHHHHHHH-----HH---CCSEEEEETTC------CHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-c--eEE-EeCCHHHHHHHHh-----cC---CCCEEEEeCCCCCCcHHHHHHHHHc
Confidence 457899999999999999888765 2 233 5567777776553 35 7999999975432 2234444443
No 430
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=84.95 E-value=1.6 Score=33.96 Aligned_cols=77 Identities=9% Similarity=-0.075 Sum_probs=49.4
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY 82 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~ 82 (139)
++...+..+.+|+.+|++++.++.+.+ .|. . ...+..+.+... . ..|+||+-.+.......
T Consensus 37 ~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~----~-~~~s~~e~~~~a-------~---~~DvVi~~vp~~~v~~v 97 (358)
T 4e21_A 37 MVRRLRKGGHECVVYDLNVNAVQALER----EGI----A-GARSIEEFCAKL-------V---KPRVVWLMVPAAVVDSM 97 (358)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHHHHHT----TTC----B-CCSSHHHHHHHS-------C---SSCEEEECSCGGGHHHH
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC----E-EeCCHHHHHhcC-------C---CCCEEEEeCCHHHHHHH
Confidence 345556667889999999987766543 233 1 133455544322 3 46999887654456667
Q ss_pred HHHHhhcccCCeEEEE
Q 044253 83 RETLMTLFKVGGIVIY 98 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii~ 98 (139)
++.+.+.|++|.+++-
T Consensus 98 l~~l~~~l~~g~iiId 113 (358)
T 4e21_A 98 LQRMTPLLAANDIVID 113 (358)
T ss_dssp HHHHGGGCCTTCEEEE
T ss_pred HHHHHhhCCCCCEEEe
Confidence 7778888888776653
No 431
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=84.75 E-value=9 Score=27.52 Aligned_cols=62 Identities=0% Similarity=-0.209 Sum_probs=42.2
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcCC
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
.+..+++|+.++.+....+.+++..+..+- .++.++.+|+.+ .+.++... .. +.|.++..+.
T Consensus 29 l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~---~g---~id~li~~Ag 96 (266)
T 3oig_A 29 LHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQ---VG---VIHGIAHCIA 96 (266)
T ss_dssp HHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHH---HS---CCCEEEECCC
T ss_pred HHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHH---hC---CeeEEEEccc
Confidence 445678999999998888877777766653 368899888653 22222221 24 7899998753
No 432
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=84.74 E-value=0.92 Score=34.54 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=46.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCCh-HHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRA-LPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da-~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
+++|++++.+++..+.+++ .|.. .++..+- .+...++.. .. .+|+||--... ...++.+.+.
T Consensus 196 Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~----g~---g~D~vid~~g~---~~~~~~~~~~ 258 (344)
T 2h6e_A 196 NITIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLTD----GL---GASIAIDLVGT---EETTYNLGKL 258 (344)
T ss_dssp TCEEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHHT----TC---CEEEEEESSCC---HHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhhc----CC---CccEEEECCCC---hHHHHHHHHH
Confidence 6789999999999888875 3542 2231111 222333321 24 69999865543 3356778899
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 259 l~~~G~iv~~g 269 (344)
T 2h6e_A 259 LAQEGAIILVG 269 (344)
T ss_dssp EEEEEEEEECC
T ss_pred hhcCCEEEEeC
Confidence 99999998643
No 433
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=84.72 E-value=0.6 Score=35.15 Aligned_cols=73 Identities=11% Similarity=0.039 Sum_probs=45.8
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++..+.+++ .|.. . .+-..+... +..+. .. .+|+||--... ..++.+.+.
T Consensus 170 ~Ga~Vi~~~~~~~~~~~~~~----lGa~-~-vi~~~~~~~-~~~~~-----~~---~~d~v~d~~g~----~~~~~~~~~ 230 (324)
T 3nx4_A 170 LGYQVAAVSGRESTHGYLKS----LGAN-R-ILSRDEFAE-SRPLE-----KQ---LWAGAIDTVGD----KVLAKVLAQ 230 (324)
T ss_dssp TTCCEEEEESCGGGHHHHHH----HTCS-E-EEEGGGSSC-CCSSC-----CC---CEEEEEESSCH----HHHHHHHHT
T ss_pred cCCEEEEEeCCHHHHHHHHh----cCCC-E-EEecCCHHH-HHhhc-----CC---CccEEEECCCc----HHHHHHHHH
Confidence 46799999999999998875 4543 1 111111111 12221 24 79987643332 267888899
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
|+++|.++.-..
T Consensus 231 l~~~G~iv~~G~ 242 (324)
T 3nx4_A 231 MNYGGCVAACGL 242 (324)
T ss_dssp EEEEEEEEECCC
T ss_pred HhcCCEEEEEec
Confidence 999999987543
No 434
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=84.72 E-value=1.2 Score=35.27 Aligned_cols=64 Identities=5% Similarity=0.060 Sum_probs=39.9
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
..++.+|++||+.+-. . .+.. .++++++++|++..... .. +||+|++|-.. ........+.
T Consensus 230 ~~rg~~V~aVD~~~l~-~----~l~~---~~~V~~~~~d~~~~~~~-------~~---~~D~vvsDm~~-~p~~~~~l~~ 290 (375)
T 4auk_A 230 VKRNMWVYSVDNGPMA-Q----SLMD---TGQVTWLREDGFKFRPT-------RS---NISWMVCDMVE-KPAKVAALMA 290 (375)
T ss_dssp HHTTCEEEEECSSCCC-H----HHHT---TTCEEEECSCTTTCCCC-------SS---CEEEEEECCSS-CHHHHHHHHH
T ss_pred HHCCCEEEEEEhhhcC-h----hhcc---CCCeEEEeCccccccCC-------CC---CcCEEEEcCCC-ChHHhHHHHH
Confidence 3456799999986522 1 1222 25799999999876321 35 89999999754 3344444333
Q ss_pred hcc
Q 044253 88 TLF 90 (139)
Q Consensus 88 ~lL 90 (139)
+.|
T Consensus 291 ~wl 293 (375)
T 4auk_A 291 QWL 293 (375)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 435
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=84.68 E-value=6.2 Score=28.43 Aligned_cols=78 Identities=10% Similarity=0.028 Sum_probs=51.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..+|-++......+..++..|+ .+ ....+..+.+..+. .. .||+|++|.... +-..+++.+..
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v-~~a~~~~eal~~l~-----~~---~~dlvl~D~~mp~~~G~~l~~~ir~ 197 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGY--QC-KTANDGVDALNVLS-----KN---HIDIVLSDVNMPNMDGYRLTQRIRQ 197 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTS--EE-EEECCSHHHHHHHH-----HS---CCSEEEEEESSCSSCCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC--EE-EEECCHHHHHHHHH-----hC---CCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 35799999999999999999998887 24 35667777776553 35 799999996432 22344555543
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
.-..--++++.
T Consensus 198 ~~~~~piI~lt 208 (254)
T 2ayx_A 198 LGLTLPVIGVT 208 (254)
T ss_dssp HHCCSCEEEEE
T ss_pred cCCCCcEEEEE
Confidence 32222345543
No 436
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=84.48 E-value=0.83 Score=35.44 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=43.0
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCC--------Ccc-----
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAH--------KDN----- 78 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~--------~~~----- 78 (139)
+.|+++|+.+-.. ..+ .+++||.... . . .. +||+|+.|-. ...
T Consensus 139 ~~VVavDL~~~~s-----------da~--~~IqGD~~~~-~-~------~~---k~DLVISDMAPNtTG~~D~d~~Rs~~ 194 (344)
T 3r24_A 139 TLLVDSDLNDFVS-----------DAD--STLIGDCATV-H-T------AN---KWDLIISDMYDPRTKHVTKENDSKEG 194 (344)
T ss_dssp CEEEEEESSCCBC-----------SSS--EEEESCGGGE-E-E------SS---CEEEEEECCCCTTSCSSCSCCCCCCT
T ss_pred cEEEEeeCccccc-----------CCC--eEEEcccccc-c-c------CC---CCCEEEecCCCCcCCccccchhHHHH
Confidence 4788888887542 112 4599997542 1 1 35 8999999941 111
Q ss_pred -hHHHHHHHhhcccCCeEEEEeCC
Q 044253 79 -YRNYRETLMTLFKVGGIVIYDNT 101 (139)
Q Consensus 79 -~~~~~~~~~~lL~~gG~ii~~~~ 101 (139)
.+..++-+.+.|++||.+++.-.
T Consensus 195 L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 195 FFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhCcCCCEEEEEEe
Confidence 13345556689999999998633
No 437
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=84.46 E-value=5.5 Score=24.83 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=45.9
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..+|-++......+..++ .|+ .+ ....+..+.+..+. .. .+|+|++|.... +...+++.+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~--~v-~~~~~~~~a~~~l~-----~~---~~dlvi~d~~l~~~~g~~~~~~l~~ 71 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEF--DC-TTAADGASGLQQAL-----AH---PPDVLISDVNMDGMDGYALCGHFRS 71 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTS--EE-EEESSHHHHHHHHH-----HS---CCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCc--EE-EEECCHHHHHHHHh-----cC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4579999999999999988887 554 23 35667777776553 35 799999997433 33455665554
Q ss_pred c
Q 044253 89 L 89 (139)
Q Consensus 89 l 89 (139)
.
T Consensus 72 ~ 72 (133)
T 3nhm_A 72 E 72 (133)
T ss_dssp S
T ss_pred C
Confidence 3
No 438
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=84.37 E-value=5.6 Score=24.87 Aligned_cols=69 Identities=9% Similarity=0.025 Sum_probs=47.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
..+|..||-++......++.++..|+. ......+..+.+..+.. .. .+|+|++|...+. -..+++.+..
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~--~v~~~~~~~~a~~~~~~----~~---~~dlvi~D~~~p~~~g~~~~~~lr~ 75 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYE--DVLEAEHGVEAWEKLDA----NA---DTKVLITDWNMPEMNGLDLVKKVRS 75 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCC--CEEEESSHHHHHHHHHH----CT---TCCEEEECSCCSSSCHHHHHHHHHT
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCc--EEEEeCCHHHHHHHHHh----CC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 457999999999999999999988873 23455667776655432 34 6999999975432 3445555544
No 439
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=84.10 E-value=6.1 Score=25.03 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=47.2
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc--hHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDN--YRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~--~~~~~~~~~~ 88 (139)
.+|..+|-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|..... -.++++.+..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~ 71 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGY--RPI-TAFSGEECLEALN-----AT---PPDLVLLDIMMEPMDGWETLERIKT 71 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HS---CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCc--eEE-EeCCHHHHHHHHh-----cc---CCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 5789999999999999999988776 233 5667777766553 35 7999999975432 3345555543
No 440
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=84.06 E-value=0.48 Score=36.67 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=37.4
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHh-hHHhhhcccCCCceeEEEEcCCC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQ-LLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~-~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
.|+++|+++.+++..+.|+.. ..++++|+.+.... +. .. .+|+|+.+++.
T Consensus 28 ~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~-----~~---~~D~l~~gpPC 78 (343)
T 1g55_A 28 VVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFD-----RL---SFDMILMSPPC 78 (343)
T ss_dssp EEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHH-----HH---CCSEEEECCC-
T ss_pred EEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcC-----cC---CcCEEEEcCCC
Confidence 589999999999999999742 34778898875422 21 23 69999999874
No 441
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=83.93 E-value=3.8 Score=30.40 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=45.3
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCCh-HHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRA-LPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da-~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+++|++++.+++..+.+++ .|.. .++..+- .+....+ . .+|+||- ... ..++.+.+
T Consensus 149 ~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~-------~---~~d~vid-~g~----~~~~~~~~ 206 (302)
T 1iz0_A 149 MGLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW-------G---GLDLVLE-VRG----KEVEESLG 206 (302)
T ss_dssp TTCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT-------T---SEEEEEE-CSC----TTHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh-------c---CceEEEE-CCH----HHHHHHHH
Confidence 46799999999999888764 4542 2232211 2332222 3 7999988 653 24677889
Q ss_pred cccCCeEEEEe
Q 044253 89 LFKVGGIVIYD 99 (139)
Q Consensus 89 lL~~gG~ii~~ 99 (139)
.|+++|.++.-
T Consensus 207 ~l~~~G~~v~~ 217 (302)
T 1iz0_A 207 LLAHGGRLVYI 217 (302)
T ss_dssp TEEEEEEEEEC
T ss_pred hhccCCEEEEE
Confidence 99999999863
No 442
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=83.41 E-value=1.7 Score=33.19 Aligned_cols=73 Identities=4% Similarity=-0.009 Sum_probs=47.0
Q ss_pred hhcc-eeEEeCCcc---HHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHH
Q 044253 10 FIYF-IVAIDVSRE---SSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRET 85 (139)
Q Consensus 10 ~~~~-v~~vD~s~~---~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~ 85 (139)
.+++ |++++.+++ ..+.+++ .|. +.+.....|..+ +.++ .. .+|+||--... ...++.
T Consensus 197 ~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa-~~v~~~~~~~~~-i~~~------~g---g~Dvvid~~g~---~~~~~~ 258 (357)
T 2b5w_A 197 KGYENLYCLGRRDRPDPTIDIIEE----LDA-TYVDSRQTPVED-VPDV------YE---QMDFIYEATGF---PKHAIQ 258 (357)
T ss_dssp TCCCEEEEEECCCSSCHHHHHHHH----TTC-EEEETTTSCGGG-HHHH------SC---CEEEEEECSCC---HHHHHH
T ss_pred cCCcEEEEEeCCcccHHHHHHHHH----cCC-cccCCCccCHHH-HHHh------CC---CCCEEEECCCC---hHHHHH
Confidence 4566 999999998 8888764 564 223111224444 4333 14 69999755432 335677
Q ss_pred HhhcccCCeEEEEeC
Q 044253 86 LMTLFKVGGIVIYDN 100 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~ 100 (139)
+.+.|+++|.++.-.
T Consensus 259 ~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 259 SVQALAPNGVGALLG 273 (357)
T ss_dssp HHHHEEEEEEEEECC
T ss_pred HHHHHhcCCEEEEEe
Confidence 889999999998644
No 443
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=83.38 E-value=1.3 Score=33.61 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=46.6
Q ss_pred chhhhhhhc--ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH-HHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253 4 NLESTFFIY--FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP-ALDQLLKDEKIHFFFENFDYAFVDAHKDNYR 80 (139)
Q Consensus 4 ~~~~~~~~~--~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~-~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~ 80 (139)
+...+..+. +|+++|++++.++.+++ .|..+. ...+..+ . . . ..|+||+-.+.....
T Consensus 49 A~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~~---~~~~~~~~~---~-------~---~aDvVilavp~~~~~ 108 (314)
T 3ggo_A 49 AKSLRRSGFKGKIYGYDINPESISKAVD----LGIIDE---GTTSIAKVE---D-------F---SPDFVMLSSPVRTFR 108 (314)
T ss_dssp HHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCSE---EESCTTGGG---G-------G---CCSEEEECSCGGGHH
T ss_pred HHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcch---hcCCHHHHh---h-------c---cCCEEEEeCCHHHHH
Confidence 334444556 89999999988777653 454221 1233322 1 1 3 588998877655666
Q ss_pred HHHHHHhhcccCCeEEE
Q 044253 81 NYRETLMTLFKVGGIVI 97 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii 97 (139)
.+++.+.+.++++.+++
T Consensus 109 ~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 109 EIAKKLSYILSEDATVT 125 (314)
T ss_dssp HHHHHHHHHSCTTCEEE
T ss_pred HHHHHHhhccCCCcEEE
Confidence 77777777887777654
No 444
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=82.97 E-value=6.4 Score=24.46 Aligned_cols=74 Identities=11% Similarity=-0.007 Sum_probs=46.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch--HHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY--RNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~--~~~~~~~~~ 88 (139)
..+|..+|-++...+..+..++..+. .+ ....+..+.+..+ .. .+|+|++|...... ..+++.+..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~~~~~~------~~---~~dlvi~D~~l~~~~g~~~~~~l~~ 70 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFG--NV-EAFQHPRAFLTLS------LN---KQDIIILDLMMPDMDGIEVIRHLAE 70 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCS--CE-EEESCHHHHTTSC------CC---TTEEEEEECCTTTTHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcc--ee-eeecCHHHHHHhh------cc---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 45789999999999999999877642 23 3445565554333 34 59999999754432 334555544
Q ss_pred cccCCeEEE
Q 044253 89 LFKVGGIVI 97 (139)
Q Consensus 89 lL~~gG~ii 97 (139)
. .+...++
T Consensus 71 ~-~~~~~ii 78 (135)
T 3eqz_A 71 H-KSPASLI 78 (135)
T ss_dssp T-TCCCEEE
T ss_pred C-CCCCCEE
Confidence 3 2443333
No 445
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=82.71 E-value=7.1 Score=24.77 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=52.4
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC---cchHHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK---DNYRNYRETL 86 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~---~~~~~~~~~~ 86 (139)
...+|..||-++......++.++..|+. +. ...+..+.+..+.. .. .+|+|++|... .....+++.+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~a~~~l~~----~~---~~dlvi~D~~l~~~~~g~~~~~~l 73 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYT--VE-IALTGEAAVEKVSG----GW---YPDLILMDIELGEGMDGVQTALAI 73 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHHT----TC---CCSEEEEESSCSSSCCHHHHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCE--EE-EecChHHHHHHHhc----CC---CCCEEEEeccCCCCCCHHHHHHHH
Confidence 3468999999999999999999988862 43 56677777765531 25 79999999753 2334555655
Q ss_pred hhcccCCeEEEEe
Q 044253 87 MTLFKVGGIVIYD 99 (139)
Q Consensus 87 ~~lL~~gG~ii~~ 99 (139)
... ..-.++++.
T Consensus 74 ~~~-~~~~ii~ls 85 (140)
T 3h5i_A 74 QQI-SELPVVFLT 85 (140)
T ss_dssp HHH-CCCCEEEEE
T ss_pred HhC-CCCCEEEEE
Confidence 543 233344443
No 446
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=82.24 E-value=8.1 Score=29.87 Aligned_cols=65 Identities=9% Similarity=0.062 Sum_probs=46.3
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
+|..||-++......+..++..|+. + ....+..+.+..+. .. .+|+|++|...+ +-.++++.+..
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~--v-~~a~~~~eal~~l~-----~~---~~DlvllDi~mP~~dG~ell~~lr~ 68 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYH--P-DTAKTLREAEKKIK-----EL---FFPVIVLDVWMPDGDGVNFIDFIKE 68 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HB---CCSEEEEESEETTEETTTHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCE--E-EEECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 5788999999999999999988863 3 45677887776653 35 799999996322 22334555443
No 447
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=81.84 E-value=6.9 Score=24.06 Aligned_cols=66 Identities=11% Similarity=-0.049 Sum_probs=45.7
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
.+|..+|-++......+..++..|+ .+. ...+..+.+..+. .. .+|+|++|.... ...++++.+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~a~~~~~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~ 70 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGF--QPV-EAEDYDSAVNQLN-----EP---WPDLILLAWMLPGGSGIQFIKHLRR 70 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EECSHHHHHTTCS-----SS---CCSEEEEESEETTEEHHHHHHHHHT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCc--eEE-EeCCHHHHHHHHh-----cc---CCCEEEEecCCCCCCHHHHHHHHHh
Confidence 4688999999999999999988776 243 4567777765442 34 799999996432 23345555544
No 448
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=81.80 E-value=7.1 Score=24.18 Aligned_cols=78 Identities=12% Similarity=-0.084 Sum_probs=51.7
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc---chHHHHHHHh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD---NYRNYRETLM 87 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~---~~~~~~~~~~ 87 (139)
..+|..+|-++......+..++..|+ .+. ...+..+.+..+.. .. .+|+|++|.... ....+++.+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~~----~~---~~dlvi~d~~l~~~~~g~~~~~~l~ 74 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGF--LVT-AVSSGAKAIEMLKS----GA---AIDGVVTDIRFCQPPDGWQVARVAR 74 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHHT----TC---CCCEEEEESCCSSSSCHHHHHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHHc----CC---CCCEEEEeeeCCCCCCHHHHHHHHH
Confidence 45799999999999999999998776 344 46777777665531 23 699999997533 2344556555
Q ss_pred hcccCCeEEEE
Q 044253 88 TLFKVGGIVIY 98 (139)
Q Consensus 88 ~lL~~gG~ii~ 98 (139)
..-..-.++++
T Consensus 75 ~~~~~~~ii~~ 85 (132)
T 2rdm_A 75 EIDPNMPIVYI 85 (132)
T ss_dssp HHCTTCCEEEE
T ss_pred hcCCCCCEEEE
Confidence 44323344444
No 449
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=81.66 E-value=1.8 Score=33.01 Aligned_cols=39 Identities=18% Similarity=0.438 Sum_probs=26.5
Q ss_pred ceeEEEEcCCC----cchHHH----------HHHHhhcccCCeEEEEeCCCCC
Q 044253 66 NFDYAFVDAHK----DNYRNY----------RETLMTLFKVGGIVIYDNTLWG 104 (139)
Q Consensus 66 ~fD~If~D~~~----~~~~~~----------~~~~~~lL~~gG~ii~~~~~~~ 104 (139)
+||+||++... .+|.+. -..++..|+|||.+++...-+.
T Consensus 211 rYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyA 263 (324)
T 3trk_A 211 RYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYA 263 (324)
T ss_dssp CEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCC
T ss_pred ceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeeccc
Confidence 89999999742 234332 2234579999999998655443
No 450
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=81.51 E-value=3.8 Score=32.91 Aligned_cols=83 Identities=7% Similarity=-0.001 Sum_probs=51.1
Q ss_pred CCchhhhhhhcceeEEeCCccHHHHHHHHHHHcCC--------------CCcEEEEeCChHHHHHhhHHhhhcccCCCce
Q 044253 2 PFNLESTFFIYFIVAIDVSRESSETGLPIIKKVEV--------------DLKINLMESRALPALDQLLKDEKIHFFFENF 67 (139)
Q Consensus 2 ~~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~--------------~~~i~~~~~da~~~l~~~~~~~~~~~~~~~f 67 (139)
|.|...+..+.+|+++|++++.++..++. .... ..++++ ..|..+.+ . ..
T Consensus 22 ~~A~~La~~G~~V~~~D~~~~kv~~l~~g--~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~----------~---~a 85 (446)
T 4a7p_A 22 VSGACFSDFGHEVVCVDKDARKIELLHQN--VMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV----------K---DA 85 (446)
T ss_dssp HHHHHHHHTTCEEEEECSCSTTHHHHTTT--CCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH----------T---TC
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHhcC--CCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH----------h---cC
Confidence 44556666788999999999998877542 1100 123333 23443332 2 57
Q ss_pred eEEEEcCCCc-----------chHHHHHHHhhcccCCeEEEEeC
Q 044253 68 DYAFVDAHKD-----------NYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 68 D~If~D~~~~-----------~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
|+||+-.+.+ ......+.+.+.|++|.+++...
T Consensus 86 Dvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S 129 (446)
T 4a7p_A 86 DAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS 129 (446)
T ss_dssp SEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred CEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 8898863221 24556677778898888877643
No 451
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=80.77 E-value=4.2 Score=33.05 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=50.0
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCC-CcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-chH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVD-LKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-NYR 80 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~-~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-~~~ 80 (139)
+|...+..+.+|++.|++++.++.+.+. +.. .++. ...+..+.+..+ . ..|+|++-.+.. ...
T Consensus 19 lA~~L~~~G~~V~v~dr~~~~~~~l~~~----g~~g~~i~-~~~s~~e~v~~l-------~---~aDvVil~Vp~~~~v~ 83 (484)
T 4gwg_A 19 LILNMNDHGFVVCAFNRTVSKVDDFLAN----EAKGTKVV-GAQSLKEMVSKL-------K---KPRRIILLVKAGQAVD 83 (484)
T ss_dssp HHHHHHHTTCCEEEECSSTHHHHHHHHT----TTTTSSCE-ECSSHHHHHHTB-------C---SSCEEEECSCSSHHHH
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHhc----ccCCCcee-ccCCHHHHHhhc-------c---CCCEEEEecCChHHHH
Confidence 3455566678999999999887765442 211 1222 134555554433 2 478888876543 455
Q ss_pred HHHHHHhhcccCCeEEEE
Q 044253 81 NYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~ 98 (139)
..++.+.+.|++|.+++-
T Consensus 84 ~vl~~l~~~L~~g~iIId 101 (484)
T 4gwg_A 84 DFIEKLVPLLDTGDIIID 101 (484)
T ss_dssp HHHHHHGGGCCTTCEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 667778888888776653
No 452
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=80.62 E-value=10 Score=26.67 Aligned_cols=75 Identities=16% Similarity=0.063 Sum_probs=49.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..||-++...+..+..++..|+. +. ...+..+.+..+. .. .+|+|++|.... ....+++.+...
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~-----~~---~~dlvilD~~l~~~~g~~~~~~lr~~ 74 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFD--TA-VIGDGTQALTAVR-----EL---RPDLVLLDLMLPGMNGIDVCRVLRAD 74 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EECCGGGHHHHHH-----HH---CCSEEEEESSCSSSCHHHHHHHHHTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 47999999999999999999887762 43 5566776665543 34 799999997433 234455555443
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
- .-.++++
T Consensus 75 ~-~~~ii~l 82 (238)
T 2gwr_A 75 S-GVPIVML 82 (238)
T ss_dssp C-CCCEEEE
T ss_pred C-CCcEEEE
Confidence 2 3334444
No 453
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=80.59 E-value=3.6 Score=33.24 Aligned_cols=80 Identities=15% Similarity=0.080 Sum_probs=50.9
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRN 81 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~ 81 (139)
+|...+..+.+|+..|++++.++...+... + ..++ ...+..+.+..+ + ..|+|++-.+. .....
T Consensus 30 lA~~La~~G~~V~v~~r~~~~~~~l~~~~~--~--~gi~-~~~s~~e~v~~l-------~---~aDvVil~Vp~~~~v~~ 94 (480)
T 2zyd_A 30 LALNIESRGYTVSIFNRSREKTEEVIAENP--G--KKLV-PYYTVKEFVESL-------E---TPRRILLMVKAGAGTDA 94 (480)
T ss_dssp HHHHHHTTTCCEEEECSSHHHHHHHHHHST--T--SCEE-ECSSHHHHHHTB-------C---SSCEEEECSCSSSHHHH
T ss_pred HHHHHHhCCCeEEEEeCCHHHHHHHHhhCC--C--CCeE-EeCCHHHHHhCC-------C---CCCEEEEECCCHHHHHH
Confidence 445556667789999999988776654321 1 1233 234555544322 2 48999987654 34667
Q ss_pred HHHHHhhcccCCeEEE
Q 044253 82 YRETLMTLFKVGGIVI 97 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii 97 (139)
.++.+.+.|++|.+++
T Consensus 95 vl~~l~~~l~~g~iII 110 (480)
T 2zyd_A 95 AIDSLKPYLDKGDIII 110 (480)
T ss_dssp HHHHHGGGCCTTCEEE
T ss_pred HHHHHHhhcCCCCEEE
Confidence 7788888888877665
No 454
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=80.22 E-value=6.8 Score=30.05 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=46.3
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|+++- +++.++.+++ .|...-+.....|..+.+.++. .+ .+|+||--... ...++.+.+.
T Consensus 188 ~Ga~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t-----~g---~~d~v~d~~g~---~~~~~~~~~~ 251 (371)
T 3gqv_A 188 SGYIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQTIRTYT-----KN---NLRYALDCITN---VESTTFCFAA 251 (371)
T ss_dssp TTCEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHHHHHHHT-----TT---CCCEEEESSCS---HHHHHHHHHH
T ss_pred CCCEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHHHHHHHc-----cC---CccEEEECCCc---hHHHHHHHHH
Confidence 467888874 8888777754 5653223333345545444432 34 69998755432 3456677788
Q ss_pred c-cCCeEEEEeC
Q 044253 90 F-KVGGIVIYDN 100 (139)
Q Consensus 90 L-~~gG~ii~~~ 100 (139)
| +++|.++.-.
T Consensus 252 l~~~~G~iv~~g 263 (371)
T 3gqv_A 252 IGRAGGHYVSLN 263 (371)
T ss_dssp SCTTCEEEEESS
T ss_pred hhcCCCEEEEEe
Confidence 8 6999998644
No 455
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=80.22 E-value=14 Score=26.64 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=43.9
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHH------HHHhhHHhhhcccCCCceeEEEEcC
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALP------ALDQLLKDEKIHFFFENFDYAFVDA 74 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~------~l~~~~~~~~~~~~~~~fD~If~D~ 74 (139)
..+..+++|+.++++++.++.+.+.++..+- .++.++.+|+.+ .+.+.... .. +.|.++.++
T Consensus 27 ~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~---~G---~iD~lvnnA 94 (256)
T 4fs3_A 27 VLDQLGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGKD---VG---NIDGVYHSI 94 (256)
T ss_dssp HHHHTTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHHH---HC---CCSEEEECC
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHHH---hC---CCCEEEecc
Confidence 3455688999999999999998888877654 368888888653 22222222 24 799998765
No 456
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=80.12 E-value=5.7 Score=30.89 Aligned_cols=78 Identities=10% Similarity=0.005 Sum_probs=52.6
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCC-cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHH
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDL-KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYR 83 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~-~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~ 83 (139)
.+.....++.+.=|--....++.|++.+|+.+ .+++... . ... .. .||+|++-.++. .....+
T Consensus 54 ~~~~~~~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~---~~~------~~---~~~~v~~~lpk~~~~l~~~L 119 (375)
T 4dcm_A 54 CALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDS--T---ADY------PQ---QPGVVLIKVPKTLALLEQQL 119 (375)
T ss_dssp HHTGGGCCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--T---SCC------CS---SCSEEEEECCSCHHHHHHHH
T ss_pred HhhccCCceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--c---ccc------cc---CCCEEEEEcCCCHHHHHHHH
Confidence 33334577888555556667789999999954 4777633 1 122 35 799999887643 234456
Q ss_pred HHHhhcccCCeEEEE
Q 044253 84 ETLMTLFKVGGIVIY 98 (139)
Q Consensus 84 ~~~~~lL~~gG~ii~ 98 (139)
..+...|++|+.+++
T Consensus 120 ~~l~~~l~~~~~i~~ 134 (375)
T 4dcm_A 120 RALRKVVTSDTRIIA 134 (375)
T ss_dssp HHHHTTCCTTSEEEE
T ss_pred HHHHhhCCCCCEEEE
Confidence 777889999999875
No 457
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=80.07 E-value=4.6 Score=30.40 Aligned_cols=81 Identities=10% Similarity=-0.003 Sum_probs=49.5
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHH----cCCCC--cEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcch
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKK----VEVDL--KINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNY 79 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~----~g~~~--~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~ 79 (139)
..+..+.+|+.+|++++.++..++.... .+... ++.....|..+.+ . .+|+|++-.+....
T Consensus 22 ~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~D~vi~~v~~~~~ 88 (359)
T 1bg6_A 22 YLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----------K---DADVILIVVPAIHH 88 (359)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----------T---TCSEEEECSCGGGH
T ss_pred HHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH----------h---cCCEEEEeCCchHH
Confidence 3444567899999999887766553210 00100 0101223433321 3 68999998766566
Q ss_pred HHHHHHHhhcccCCeEEEEe
Q 044253 80 RNYRETLMTLFKVGGIVIYD 99 (139)
Q Consensus 80 ~~~~~~~~~lL~~gG~ii~~ 99 (139)
...++.+.+.++++..++..
T Consensus 89 ~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 89 ASIAANIASYISEGQLIILN 108 (359)
T ss_dssp HHHHHHHGGGCCTTCEEEES
T ss_pred HHHHHHHHHhCCCCCEEEEc
Confidence 77788888889988877654
No 458
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=79.99 E-value=7.8 Score=23.50 Aligned_cols=76 Identities=5% Similarity=0.027 Sum_probs=48.3
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..+|-++......++.++..|+ .+ ....+..+.+..+. .. .+|+|++|.... ....+++.+..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~--~v-~~~~~~~~~~~~~~-----~~---~~dlvi~D~~l~~~~g~~~~~~l~~- 69 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGM--RV-FEAETLQRGLLEAA-----TR---KPDLIILDLGLPDGDGIEFIRDLRQ- 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTC--EE-EEESSHHHHHHHHH-----HH---CCSEEEEESEETTEEHHHHHHHHHT-
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCC--EE-EEeCCHHHHHHHHh-----cC---CCCEEEEeCCCCCCcHHHHHHHHHh-
Confidence 3688899999999999999987765 23 34566666665443 34 799999996432 23345555542
Q ss_pred ccCCeEEEEe
Q 044253 90 FKVGGIVIYD 99 (139)
Q Consensus 90 L~~gG~ii~~ 99 (139)
...-.++++.
T Consensus 70 ~~~~~ii~~s 79 (121)
T 1zh2_A 70 WSAVPVIVLS 79 (121)
T ss_dssp TCCCCEEEEE
T ss_pred CCCCcEEEEE
Confidence 2233344443
No 459
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=79.86 E-value=2.6 Score=32.59 Aligned_cols=74 Identities=7% Similarity=-0.020 Sum_probs=43.9
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNY 82 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~ 82 (139)
|+......+.+|+++|.+++.++.+++ .|.. ...+..+.+... .. ..|+||+-.+......+
T Consensus 23 lA~~L~~~G~~V~~~dr~~~~~~~a~~----~G~~-----~~~~~~e~~~~a------~~---~aDlVilavP~~~~~~v 84 (341)
T 3ktd_A 23 LLRDLHAANHSVFGYNRSRSGAKSAVD----EGFD-----VSADLEATLQRA------AA---EDALIVLAVPMTAIDSL 84 (341)
T ss_dssp HHHHHHHTTCCEEEECSCHHHHHHHHH----TTCC-----EESCHHHHHHHH------HH---TTCEEEECSCHHHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCe-----eeCCHHHHHHhc------cc---CCCEEEEeCCHHHHHHH
Confidence 344555567899999999988877653 4541 134555544322 12 46888887664444555
Q ss_pred HHHHhhcccCCeE
Q 044253 83 RETLMTLFKVGGI 95 (139)
Q Consensus 83 ~~~~~~lL~~gG~ 95 (139)
++.+.++ ++|.+
T Consensus 85 l~~l~~~-~~~~i 96 (341)
T 3ktd_A 85 LDAVHTH-APNNG 96 (341)
T ss_dssp HHHHHHH-CTTCC
T ss_pred HHHHHcc-CCCCE
Confidence 5555554 55543
No 460
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=79.83 E-value=14 Score=26.47 Aligned_cols=82 Identities=10% Similarity=0.015 Sum_probs=51.0
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcCCCc--
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDAHKD-- 77 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~~~~-- 77 (139)
..+..+++|+.++++++.++.+.+.+ + .++.++.+|..+. +...... .. +.|+++..+...
T Consensus 27 ~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~---~g---~id~lv~nAg~~~~ 95 (255)
T 4eso_A 27 RLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQT---LG---AIDLLHINAGVSEL 95 (255)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHH---HS---SEEEEEECCCCCCC
T ss_pred HHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHH---hC---CCCEEEECCCCCCC
Confidence 34556789999999988877666544 2 4688998887642 1222111 24 799999875321
Q ss_pred ---------chH-----------HHHHHHhhcccCCeEEEE
Q 044253 78 ---------NYR-----------NYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 78 ---------~~~-----------~~~~~~~~lL~~gG~ii~ 98 (139)
.+. ...+.+.+.++++|.|+.
T Consensus 96 ~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~ 136 (255)
T 4eso_A 96 EPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVF 136 (255)
T ss_dssp BCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEE
Confidence 111 123445567777888775
No 461
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=79.45 E-value=4.6 Score=32.54 Aligned_cols=84 Identities=12% Similarity=0.046 Sum_probs=51.3
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc-chHH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD-NYRN 81 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~-~~~~ 81 (139)
+|...+..+.+|+.+|++++.++...+.........++. ...+..+.+..+ . ..|+|++-.+.. ....
T Consensus 16 lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~-~~~~~~e~v~~l-------~---~aDvVilaVp~~~~v~~ 84 (478)
T 1pgj_A 16 LALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLK-AFETMEAFAASL-------K---KPRKALILVQAGAATDS 84 (478)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEE-ECSCHHHHHHHB-------C---SSCEEEECCCCSHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeE-EECCHHHHHhcc-------c---CCCEEEEecCChHHHHH
Confidence 344555567789999999988776654321000112232 334555554432 3 489999876543 4566
Q ss_pred HHHHHhhcccCCeEEE
Q 044253 82 YRETLMTLFKVGGIVI 97 (139)
Q Consensus 82 ~~~~~~~lL~~gG~ii 97 (139)
.++.+.+.|++|.+++
T Consensus 85 vl~~l~~~l~~g~iII 100 (478)
T 1pgj_A 85 TIEQLKKVFEKGDILV 100 (478)
T ss_dssp HHHHHHHHCCTTCEEE
T ss_pred HHHHHHhhCCCCCEEE
Confidence 7777778888877665
No 462
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=79.04 E-value=12 Score=28.46 Aligned_cols=81 Identities=9% Similarity=-0.095 Sum_probs=51.9
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHH-------HcCCCC----------cEEEEeCChHHHHHhhHHhhhcccCCCc
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIK-------KVEVDL----------KINLMESRALPALDQLLKDEKIHFFFEN 66 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~-------~~g~~~----------~i~~~~~da~~~l~~~~~~~~~~~~~~~ 66 (139)
|...+..+.+|+.+|++++.++.+++.++ ..|+.+ ++++. .|..+.+ . .
T Consensus 22 A~~la~~G~~V~l~d~~~~~~~~~~~~i~~~l~~l~~~G~~~g~~~~~~~~~~i~~~-~~~~eav----------~---~ 87 (319)
T 2dpo_A 22 AMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLAEAV----------E---G 87 (319)
T ss_dssp HHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHHHHT----------T---T
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCccccccchHHHhhceEEe-CCHHHHH----------h---c
Confidence 34455667899999999999998876532 234311 23432 3333321 3 6
Q ss_pred eeEEEEcCCCc--chHHHHHHHhhcccCCeEEEE
Q 044253 67 FDYAFVDAHKD--NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 67 fD~If~D~~~~--~~~~~~~~~~~lL~~gG~ii~ 98 (139)
.|+|+.-.+.. ....++..+.+.++++.+++.
T Consensus 88 aDlVieavpe~~~~k~~v~~~l~~~~~~~~Ii~s 121 (319)
T 2dpo_A 88 VVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSS 121 (319)
T ss_dssp EEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEE
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCeEEEE
Confidence 89999877532 234577888888888887653
No 463
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=79.02 E-value=1.7 Score=32.97 Aligned_cols=74 Identities=11% Similarity=-0.023 Sum_probs=47.0
Q ss_pred hhc-ceeEEeCCccHHHHHHHHHHHcCCCCcE-EEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHh
Q 044253 10 FIY-FIVAIDVSRESSETGLPIIKKVEVDLKI-NLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLM 87 (139)
Q Consensus 10 ~~~-~v~~vD~s~~~~~~Ar~n~~~~g~~~~i-~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~ 87 (139)
.++ +|++++.+++.++.+++. . +.+ .....+..+.+.++. .. .+|+||--... ...++.+.
T Consensus 187 ~Ga~~Vi~~~~~~~~~~~~~~l-----a-~~v~~~~~~~~~~~~~~~~-----~~---g~D~vid~~g~---~~~~~~~~ 249 (343)
T 2dq4_A 187 SGAGPILVSDPNPYRLAFARPY-----A-DRLVNPLEEDLLEVVRRVT-----GS---GVEVLLEFSGN---EAAIHQGL 249 (343)
T ss_dssp TTCCSEEEECSCHHHHGGGTTT-----C-SEEECTTTSCHHHHHHHHH-----SS---CEEEEEECSCC---HHHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHh-----H-HhccCcCccCHHHHHHHhc-----CC---CCCEEEECCCC---HHHHHHHH
Confidence 466 899999999888877653 1 111 111234444444332 24 79999865542 34567788
Q ss_pred hcccCCeEEEEeC
Q 044253 88 TLFKVGGIVIYDN 100 (139)
Q Consensus 88 ~lL~~gG~ii~~~ 100 (139)
+.|+++|.++.-.
T Consensus 250 ~~l~~~G~iv~~g 262 (343)
T 2dq4_A 250 MALIPGGEARILG 262 (343)
T ss_dssp HHEEEEEEEEECC
T ss_pred HHHhcCCEEEEEe
Confidence 9999999998643
No 464
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=78.66 E-value=9.5 Score=28.36 Aligned_cols=77 Identities=9% Similarity=0.050 Sum_probs=49.5
Q ss_pred hcceeEEeCC--ccHHHHHHHHHHHcCCCCcEEEEeCChH-HHHHhhHHhhhcccCCCceeEEEEc-CCCc-chHHHHHH
Q 044253 11 IYFIVAIDVS--RESSETGLPIIKKVEVDLKINLMESRAL-PALDQLLKDEKIHFFFENFDYAFVD-AHKD-NYRNYRET 85 (139)
Q Consensus 11 ~~~v~~vD~s--~~~~~~Ar~n~~~~g~~~~i~~~~~da~-~~l~~~~~~~~~~~~~~~fD~If~D-~~~~-~~~~~~~~ 85 (139)
+.+|..|+-+ ++.....++.++..|+. ++++..+.. .....+ . .||+|+++ .... -.....+.
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~--V~~i~~~~~~~~~~~L-------~---~yDvIIl~d~~~~~l~~~~~~~ 71 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWE--FDYIPSHVGLDVGELL-------A---KQDLVILSDYPAERMTAQAIDQ 71 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCC--CEEECTTSCBCSSHHH-------H---TCSEEEEESCCGGGBCHHHHHH
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCce--EEEecccccccChhHH-------h---cCCEEEEcCCccccCCHHHHHH
Confidence 3577888866 66778888889989984 777764432 111223 3 79999886 3321 23456677
Q ss_pred HhhcccCCeEEEEe
Q 044253 86 LMTLFKVGGIVIYD 99 (139)
Q Consensus 86 ~~~lL~~gG~ii~~ 99 (139)
+.+.++.||-+++-
T Consensus 72 L~~yV~~GGgLi~~ 85 (259)
T 3rht_A 72 LVTMVKAGCGLVML 85 (259)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHhCCeEEEe
Confidence 77777788887764
No 465
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=78.53 E-value=2.8 Score=33.30 Aligned_cols=76 Identities=11% Similarity=0.003 Sum_probs=46.6
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCCh-----------------HHHHHhhHHhhhcccCCCceeEEEE
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRA-----------------LPALDQLLKDEKIHFFFENFDYAFV 72 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da-----------------~~~l~~~~~~~~~~~~~~~fD~If~ 72 (139)
.+++|++++.+++.++.+++ .|...-+.....|. .+.+.++.. .. .+|+||-
T Consensus 252 ~Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~----g~---g~Dvvid 320 (456)
T 3krt_A 252 GGANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTG----GE---DIDIVFE 320 (456)
T ss_dssp TTCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHT----SC---CEEEEEE
T ss_pred cCCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhC----CC---CCcEEEE
Confidence 46789999999998888865 45431121111111 122232221 25 7998875
Q ss_pred cCCCcchHHHHHHHhhcccCCeEEEEeC
Q 044253 73 DAHKDNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 73 D~~~~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
-... ..++.+.+.|+++|.++.-.
T Consensus 321 ~~G~----~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 321 HPGR----ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp CSCH----HHHHHHHHHEEEEEEEEESC
T ss_pred cCCc----hhHHHHHHHhhCCcEEEEEe
Confidence 5432 46778889999999998744
No 466
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=78.50 E-value=12 Score=28.56 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=48.8
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhh
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMT 88 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~ 88 (139)
..+|..||-++......+..++..|+. + ....+..+.+..+. .. ++|+|++|...+ +-.++++.+..
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~--v-~~a~~~~~al~~~~-----~~---~~dlvllD~~mp~~~G~~~~~~lr~ 73 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFK--V-LQALNGLQGLQIFE-----SE---QPDLVICDLRMPQIDGLELIRRIRQ 73 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEE--E-EECSSHHHHHHHHH-----HS---CCSEEEECCCSSSSCTHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCE--E-EEECCHHHHHHHHh-----hC---CCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 457999999999999999999987752 3 35667777776653 35 799999996433 23445565554
Q ss_pred c
Q 044253 89 L 89 (139)
Q Consensus 89 l 89 (139)
.
T Consensus 74 ~ 74 (394)
T 3eq2_A 74 T 74 (394)
T ss_dssp T
T ss_pred h
Confidence 4
No 467
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=78.22 E-value=2.6 Score=30.44 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=40.6
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKV 92 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~ 92 (139)
+|+.+|++++.++.+++.. |. + ...+..+.+ . ..|+||+-.+.......++.+.+.+++
T Consensus 31 ~V~~~~r~~~~~~~~~~~~---g~----~-~~~~~~e~~----------~---~aDvVilav~~~~~~~v~~~l~~~l~~ 89 (247)
T 3gt0_A 31 QIICSDLNTANLKNASEKY---GL----T-TTTDNNEVA----------K---NADILILSIKPDLYASIINEIKEIIKN 89 (247)
T ss_dssp GEEEECSCHHHHHHHHHHH---CC----E-ECSCHHHHH----------H---HCSEEEECSCTTTHHHHC---CCSSCT
T ss_pred eEEEEeCCHHHHHHHHHHh---CC----E-EeCChHHHH----------H---hCCEEEEEeCHHHHHHHHHHHHhhcCC
Confidence 8999999998877665432 32 2 233444432 2 578999876544566677777777888
Q ss_pred CeEEEE
Q 044253 93 GGIVIY 98 (139)
Q Consensus 93 gG~ii~ 98 (139)
+.+++.
T Consensus 90 ~~~vvs 95 (247)
T 3gt0_A 90 DAIIVT 95 (247)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 877663
No 468
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=78.15 E-value=6.3 Score=31.13 Aligned_cols=82 Identities=9% Similarity=-0.035 Sum_probs=47.8
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHHH------------HHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEE
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLPI------------IKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYA 70 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~n------------~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~I 70 (139)
+|...+..+.+|+++|++++.++..++. +...-...++++ ..|..+.+ . ..|+|
T Consensus 15 ~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~~----------~---~aDvv 80 (436)
T 1mv8_A 15 CAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKAV----------L---DSDVS 80 (436)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH----------H---TCSEE
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHHh----------c---cCCEE
Confidence 4445555677899999999988766541 000000112333 33443332 2 57999
Q ss_pred EEcCCCcc----------hHHHHHHHhhcccC---CeEEEE
Q 044253 71 FVDAHKDN----------YRNYRETLMTLFKV---GGIVIY 98 (139)
Q Consensus 71 f~D~~~~~----------~~~~~~~~~~lL~~---gG~ii~ 98 (139)
|+-.+... ....++.+.+.+++ |.+++.
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~ 121 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV 121 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE
T ss_pred EEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE
Confidence 98754322 55667777778888 666654
No 469
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=78.13 E-value=3.7 Score=31.32 Aligned_cols=74 Identities=16% Similarity=0.075 Sum_probs=45.5
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChH-HHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhh
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRAL-PALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMT 88 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~-~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~ 88 (139)
.+++|++++.+++.++.+++ .|.. .++..+-. +....+ .. .+|+||--.... ....++.+.+
T Consensus 202 ~Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~------~~---~~D~vid~~g~~-~~~~~~~~~~ 264 (360)
T 1piw_A 202 MGAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKY------FD---TFDLIVVCASSL-TDIDFNIMPK 264 (360)
T ss_dssp HTCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHS------CS---CEEEEEECCSCS-TTCCTTTGGG
T ss_pred CCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHh------hc---CCCEEEECCCCC-cHHHHHHHHH
Confidence 46789999999999988875 3542 22221111 222222 24 799998654430 0113456778
Q ss_pred cccCCeEEEEeC
Q 044253 89 LFKVGGIVIYDN 100 (139)
Q Consensus 89 lL~~gG~ii~~~ 100 (139)
.|+++|.++.-.
T Consensus 265 ~l~~~G~iv~~g 276 (360)
T 1piw_A 265 AMKVGGRIVSIS 276 (360)
T ss_dssp GEEEEEEEEECC
T ss_pred HhcCCCEEEEec
Confidence 999999998643
No 470
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=78.02 E-value=18 Score=28.06 Aligned_cols=74 Identities=9% Similarity=0.036 Sum_probs=50.0
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF 90 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL 90 (139)
+|..||-++......+..++..|+. + ....+..+.+..+. .. .+|+|++|...+ +-.++++.+...
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~--v-~~a~~~~eal~~l~-----~~---~~DlvllD~~mp~~dG~ell~~lr~~- 69 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIK--V-ESAERGKEAYKLLS-----EK---HFNVVLLDLLLPDVNGLEILKWIKER- 69 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCE--E-EEESSHHHHHHHHH-----HS---CCSEEEEESBCSSSBHHHHHHHHHHH-
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHH-----hC---CCCEEEEeCCCCCCCHHHHHHHHHhh-
Confidence 4788999999999999999888762 4 35677777776553 35 799999996433 234455555443
Q ss_pred cCCe-EEEE
Q 044253 91 KVGG-IVIY 98 (139)
Q Consensus 91 ~~gG-~ii~ 98 (139)
.+.. ++++
T Consensus 70 ~~~~pvIvl 78 (387)
T 1ny5_A 70 SPETEVIVI 78 (387)
T ss_dssp CTTSEEEEE
T ss_pred CCCCcEEEE
Confidence 3443 4444
No 471
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=77.98 E-value=4.9 Score=30.70 Aligned_cols=73 Identities=11% Similarity=-0.006 Sum_probs=46.1
Q ss_pred hhcceeEEeCCc---cHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHH-HH
Q 044253 10 FIYFIVAIDVSR---ESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYR-ET 85 (139)
Q Consensus 10 ~~~~v~~vD~s~---~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~-~~ 85 (139)
.+++|++++.++ +..+.+++ .|. +.+. ..+..+.+.+ . .. .+|+||-...... .+ +.
T Consensus 203 ~Ga~Vi~~~~~~~~~~~~~~~~~----~ga-~~v~--~~~~~~~~~~-~-----~~---~~d~vid~~g~~~---~~~~~ 263 (366)
T 2cdc_A 203 YGLEVWMANRREPTEVEQTVIEE----TKT-NYYN--SSNGYDKLKD-S-----VG---KFDVIIDATGADV---NILGN 263 (366)
T ss_dssp HTCEEEEEESSCCCHHHHHHHHH----HTC-EEEE--CTTCSHHHHH-H-----HC---CEEEEEECCCCCT---HHHHH
T ss_pred CCCEEEEEeCCccchHHHHHHHH----hCC-ceec--hHHHHHHHHH-h-----CC---CCCEEEECCCChH---HHHHH
Confidence 467999999998 77777654 354 2231 1133233332 1 24 7999987654321 35 77
Q ss_pred HhhcccCCeEEEEeCC
Q 044253 86 LMTLFKVGGIVIYDNT 101 (139)
Q Consensus 86 ~~~lL~~gG~ii~~~~ 101 (139)
+.+.|+++|.++.-..
T Consensus 264 ~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 264 VIPLLGRNGVLGLFGF 279 (366)
T ss_dssp HGGGEEEEEEEEECSC
T ss_pred HHHHHhcCCEEEEEec
Confidence 8899999999986443
No 472
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=77.82 E-value=4.4 Score=31.92 Aligned_cols=75 Identities=17% Similarity=0.019 Sum_probs=46.3
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCCh------------------HHHHHhhHHhhhcccCCCceeEEE
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRA------------------LPALDQLLKDEKIHFFFENFDYAF 71 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da------------------~~~l~~~~~~~~~~~~~~~fD~If 71 (139)
.+++|++++.+++.++.+++ .|...-+.....+. .+.+.+.. .. .+|+||
T Consensus 244 ~Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----g~---g~Dvvi 311 (447)
T 4a0s_A 244 GGGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKA-----GR---EPDIVF 311 (447)
T ss_dssp TTCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHH-----SS---CCSEEE
T ss_pred cCCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchhhhHHHHHHHHHh-----CC---CceEEE
Confidence 46789999999988888754 56532222111121 12222221 24 699988
Q ss_pred EcCCCcchHHHHHHHhhcccCCeEEEEeC
Q 044253 72 VDAHKDNYRNYRETLMTLFKVGGIVIYDN 100 (139)
Q Consensus 72 ~D~~~~~~~~~~~~~~~lL~~gG~ii~~~ 100 (139)
-.... ..++.+...|+++|.++.-.
T Consensus 312 d~~G~----~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 312 EHTGR----VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp ECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred ECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence 65542 35677888999999998744
No 473
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=77.63 E-value=2.9 Score=25.65 Aligned_cols=55 Identities=9% Similarity=-0.070 Sum_probs=40.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD 77 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~ 77 (139)
.+|..+|-++......+..++..|+. +. ...+..+.+..+. .. .+|+|++|....
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~--v~-~~~~~~~~~~~~~-----~~---~~dlvi~d~~~~ 58 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLT--CT-TFENGNEVLAALA-----SK---TPDVLLSDIRMP 58 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCC--CE-ECCCTTHHHHHSS-----SC---CCSCEEECSCSS
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcE--EE-EeCCHHHHHHHHh-----cC---CCCEEEEeeecC
Confidence 46889999999999999999877763 33 4566666665542 34 799999997543
No 474
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=77.63 E-value=5.1 Score=27.43 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=36.0
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
...+..+.+|..+|.|+..-.. ..+... ...+.++..+.......+. .. .. .||+|++|.+.
T Consensus 24 ~~la~~g~~vlliD~D~~~~~~--~~~~~~--~~~~~~~~~~~~~l~~~l~-~l--~~---~yD~viiD~~~ 85 (206)
T 4dzz_A 24 TALSRSGYNIAVVDTDPQMSLT--NWSKAG--KAAFDVFTAASEKDVYGIR-KD--LA---DYDFAIVDGAG 85 (206)
T ss_dssp HHHHHTTCCEEEEECCTTCHHH--HHHTTS--CCSSEEEECCSHHHHHTHH-HH--TT---TSSEEEEECCS
T ss_pred HHHHHCCCeEEEEECCCCCCHH--HHHhcC--CCCCcEEecCcHHHHHHHH-Hh--cC---CCCEEEEECCC
Confidence 3455567899999999775432 222221 2346777665433322221 11 35 79999999753
No 475
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=77.42 E-value=5.4 Score=32.01 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=49.6
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchHHH
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYRNY 82 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~~~ 82 (139)
+...+..+.+|+.+|++++.++...+... + ..+. ...+..+.+..+ + ..|+|++-.+. ......
T Consensus 21 A~~L~~~G~~V~v~dr~~~~~~~l~~~~~--~--~gi~-~~~s~~e~v~~l-------~---~aDvVilavp~~~~v~~v 85 (474)
T 2iz1_A 21 ALNVESRGYTVAIYNRTTSKTEEVFKEHQ--D--KNLV-FTKTLEEFVGSL-------E---KPRRIMLMVQAGAATDAT 85 (474)
T ss_dssp HHHHHHTTCCEEEECSSHHHHHHHHHHTT--T--SCEE-ECSSHHHHHHTB-------C---SSCEEEECCCTTHHHHHH
T ss_pred HHHHHhCCCEEEEEcCCHHHHHHHHHhCc--C--CCeE-EeCCHHHHHhhc-------c---CCCEEEEEccCchHHHHH
Confidence 44455567789999999988776655321 1 1233 234555554322 3 48999887654 245667
Q ss_pred HHHHhhcccCCeEEE
Q 044253 83 RETLMTLFKVGGIVI 97 (139)
Q Consensus 83 ~~~~~~lL~~gG~ii 97 (139)
++.+.+.|++|.+++
T Consensus 86 l~~l~~~l~~g~iiI 100 (474)
T 2iz1_A 86 IKSLLPLLDIGDILI 100 (474)
T ss_dssp HHHHGGGCCTTCEEE
T ss_pred HHHHHhhCCCCCEEE
Confidence 777778888877665
No 476
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=77.20 E-value=2.2 Score=32.74 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=24.5
Q ss_pred ceeEEEEcCC--C--cchH------H----HHHHHhhcccCCeEEEEeCCC
Q 044253 66 NFDYAFVDAH--K--DNYR------N----YRETLMTLFKVGGIVIYDNTL 102 (139)
Q Consensus 66 ~fD~If~D~~--~--~~~~------~----~~~~~~~lL~~gG~ii~~~~~ 102 (139)
++|+||+|-. . ..|. . ..+.+..+|+|||.+++.-.-
T Consensus 206 k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvyg 256 (320)
T 2hwk_A 206 KYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYG 256 (320)
T ss_dssp CEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECC
T ss_pred cCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 7999999952 1 1222 1 233455799999999986433
No 477
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=77.14 E-value=3.7 Score=31.06 Aligned_cols=74 Identities=9% Similarity=-0.068 Sum_probs=39.8
Q ss_pred chhhhhhh-cceeEEeCCcc---HHHHHHHHHHHcCCCCcEEEEeC-ChHHHHHhhHHhhhcccCCCceeEEEEcCCCcc
Q 044253 4 NLESTFFI-YFIVAIDVSRE---SSETGLPIIKKVEVDLKINLMES-RALPALDQLLKDEKIHFFFENFDYAFVDAHKDN 78 (139)
Q Consensus 4 ~~~~~~~~-~~v~~vD~s~~---~~~~Ar~n~~~~g~~~~i~~~~~-da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~ 78 (139)
+...+..+ .+|+.+|++++ ..+...+.+...|. .. +..+.+ . ..|+||+-.+...
T Consensus 40 A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e~~----------~---~aDvVi~avp~~~ 99 (317)
T 4ezb_A 40 AGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVAGI----------A---CADVVLSLVVGAA 99 (317)
T ss_dssp HHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGGGG----------G---GCSEEEECCCGGG
T ss_pred HHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHHHH----------h---cCCEEEEecCCHH
Confidence 33445556 78999999983 22222222333342 12 222221 2 4677877665444
Q ss_pred hHHHHHHHhhcccCCeEEE
Q 044253 79 YRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 79 ~~~~~~~~~~lL~~gG~ii 97 (139)
..+.++.+.+.+++|.+++
T Consensus 100 ~~~~~~~i~~~l~~~~ivv 118 (317)
T 4ezb_A 100 TKAVAASAAPHLSDEAVFI 118 (317)
T ss_dssp HHHHHHHHGGGCCTTCEEE
T ss_pred HHHHHHHHHhhcCCCCEEE
Confidence 4455566666777766655
No 478
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=77.01 E-value=17 Score=26.81 Aligned_cols=62 Identities=15% Similarity=0.024 Sum_probs=43.7
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcCC
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
..+..+++|+.++++++.++.+.+.+...+ .++.++.+|..+. +...... .. +.|+++..+.
T Consensus 50 ~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~---~g---~id~lvnnAg 117 (301)
T 3tjr_A 50 EFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL---LG---GVDVVFSNAG 117 (301)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH---HS---SCSEEEECCC
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh---CC---CCCEEEECCC
Confidence 344567899999999999988888887665 3688999887642 2222111 24 7999998764
No 479
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=76.92 E-value=12 Score=27.49 Aligned_cols=62 Identities=6% Similarity=0.046 Sum_probs=45.2
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcCC
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
..+..+++|+.+|++++.++.+.+.++..| .++..+.+|+.+. +.+...+ .. +.|+++..+.
T Consensus 26 ~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~---~G---~iDiLVNNAG 93 (254)
T 4fn4_A 26 KFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET---YS---RIDVLCNNAG 93 (254)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH---HS---CCCEEEECCC
T ss_pred HHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH---cC---CCCEEEECCc
Confidence 345678899999999999999988888777 3688899887632 2222221 24 7999998753
No 480
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=76.80 E-value=11 Score=27.82 Aligned_cols=81 Identities=10% Similarity=-0.027 Sum_probs=49.1
Q ss_pred chhhhhhhcceeEEeCCccHHHHHHHHHHH-------cCCC--------------CcEEEEeCChHHHHHhhHHhhhccc
Q 044253 4 NLESTFFIYFIVAIDVSRESSETGLPIIKK-------VEVD--------------LKINLMESRALPALDQLLKDEKIHF 62 (139)
Q Consensus 4 ~~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~-------~g~~--------------~~i~~~~~da~~~l~~~~~~~~~~~ 62 (139)
|...+..+.+|+.+|++++.++.+++.+.. .|.- .++++. .|..+. + .
T Consensus 31 A~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---~-------~ 99 (302)
T 1f0y_A 31 AQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TDAASV---V-------H 99 (302)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SCHHHH---T-------T
T ss_pred HHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe-cCHHHh---h-------c
Confidence 344455677999999999999887654332 2321 123332 333222 1 3
Q ss_pred CCCceeEEEEcCCCcc--hHHHHHHHhhcccCCeEEEE
Q 044253 63 FFENFDYAFVDAHKDN--YRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 63 ~~~~fD~If~D~~~~~--~~~~~~~~~~lL~~gG~ii~ 98 (139)
..|+|+.-.+... ...+++.+.+.++++.+++.
T Consensus 100 ---~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s 134 (302)
T 1f0y_A 100 ---STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134 (302)
T ss_dssp ---SCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred ---CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 6899998764321 24567777788888876653
No 481
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=76.58 E-value=14 Score=25.34 Aligned_cols=73 Identities=7% Similarity=-0.013 Sum_probs=47.1
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhc
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTL 89 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~l 89 (139)
.+|..+|-++...+..+..++..| . .....+..+.+..+ . .+|+|++|...+ +..++++.+...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~---~-v~~~~~~~~al~~~-------~---~~dlvllD~~lp~~~g~~~~~~lr~~ 68 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG---R-VKTFLTGEDFLNDE-------E---AFHVVVLDVMLPDYSGYEICRMIKET 68 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE---E-EEEESSHHHHHHCC-------S---CCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC---C-EEEECCHHHHHHhc-------C---CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 578999999999999999887655 2 33456677766532 3 799999997433 234455555443
Q ss_pred ccCCeEEEE
Q 044253 90 FKVGGIVIY 98 (139)
Q Consensus 90 L~~gG~ii~ 98 (139)
-..-.++++
T Consensus 69 ~~~~~ii~l 77 (220)
T 1p2f_A 69 RPETWVILL 77 (220)
T ss_dssp CTTSEEEEE
T ss_pred CCCCcEEEE
Confidence 322334444
No 482
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=76.49 E-value=7.2 Score=28.78 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=50.1
Q ss_pred hhhhhhhcceeEEeCCccHHHHHHHHHHHc---------CCC--------CcEEEEeCChHHHHHhhHHhhhcccCCCce
Q 044253 5 LESTFFIYFIVAIDVSRESSETGLPIIKKV---------EVD--------LKINLMESRALPALDQLLKDEKIHFFFENF 67 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~---------g~~--------~~i~~~~~da~~~l~~~~~~~~~~~~~~~f 67 (139)
...+..+.+|+.+|++++.++.+++.+... ++. .+++. ..|..+.+ . ..
T Consensus 21 ~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~~----------~---~a 86 (283)
T 4e12_A 21 FQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQAV----------K---DA 86 (283)
T ss_dssp HHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHHT----------T---TC
T ss_pred HHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHHh----------c---cC
Confidence 344556789999999999999887764321 111 12232 23333221 3 68
Q ss_pred eEEEEcCCCc--chHHHHHHHhhcccCCeEEEE
Q 044253 68 DYAFVDAHKD--NYRNYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 68 D~If~D~~~~--~~~~~~~~~~~lL~~gG~ii~ 98 (139)
|+|+.-.+.. ....+++.+.+.++++.+++.
T Consensus 87 DlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s 119 (283)
T 4e12_A 87 DLVIEAVPESLDLKRDIYTKLGELAPAKTIFAT 119 (283)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEE
Confidence 9999876543 345567778888888877653
No 483
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=76.24 E-value=4.2 Score=33.02 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=50.1
Q ss_pred CchhhhhhhcceeEEeCCccHHHHHHH-HHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC-cchH
Q 044253 3 FNLESTFFIYFIVAIDVSRESSETGLP-IIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK-DNYR 80 (139)
Q Consensus 3 ~~~~~~~~~~~v~~vD~s~~~~~~Ar~-n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~-~~~~ 80 (139)
+|...+..+.+|+.+|++++.++.+.+ ... + ..++ ...+..+.+..+ . ..|+||+-.+. ....
T Consensus 25 lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~--~--~gi~-~~~s~~e~v~~l-------~---~aDvVil~Vp~~~~v~ 89 (497)
T 2p4q_A 25 LILNAADHGFTVCAYNRTQSKVDHFLANEAK--G--KSII-GATSIEDFISKL-------K---RPRKVMLLVKAGAPVD 89 (497)
T ss_dssp HHHHHHHTTCCEEEECSSSHHHHHHHHTTTT--T--SSEE-CCSSHHHHHHTS-------C---SSCEEEECCCSSHHHH
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHccccc--C--CCeE-EeCCHHHHHhcC-------C---CCCEEEEEcCChHHHH
Confidence 455666677899999999998876654 211 1 1222 233444444322 2 47888887654 2456
Q ss_pred HHHHHHhhcccCCeEEE
Q 044253 81 NYRETLMTLFKVGGIVI 97 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii 97 (139)
..++.+.+.|++|.+++
T Consensus 90 ~vl~~l~~~l~~g~iII 106 (497)
T 2p4q_A 90 ALINQIVPLLEKGDIII 106 (497)
T ss_dssp HHHHHHGGGCCTTCEEE
T ss_pred HHHHHHHHhCCCCCEEE
Confidence 67777878888777665
No 484
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=76.14 E-value=5.1 Score=30.35 Aligned_cols=68 Identities=9% Similarity=0.092 Sum_probs=45.9
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++..+.+++ .|.. . ++ .+.. .+ .. .+|+||--..... .++.+.+.
T Consensus 199 ~Ga~Vi~~~~~~~~~~~~~~----lGa~-~--v~-~~~~----~~------~~---~~D~vid~~g~~~---~~~~~~~~ 254 (348)
T 3two_A 199 MGAEVSVFARNEHKKQDALS----MGVK-H--FY-TDPK----QC------KE---ELDFIISTIPTHY---DLKDYLKL 254 (348)
T ss_dssp TTCEEEEECSSSTTHHHHHH----TTCS-E--EE-SSGG----GC------CS---CEEEEEECCCSCC---CHHHHHTT
T ss_pred CCCeEEEEeCCHHHHHHHHh----cCCC-e--ec-CCHH----HH------hc---CCCEEEECCCcHH---HHHHHHHH
Confidence 46799999999999988864 5653 2 22 3321 12 24 7999986544321 35677899
Q ss_pred ccCCeEEEEeCC
Q 044253 90 FKVGGIVIYDNT 101 (139)
Q Consensus 90 L~~gG~ii~~~~ 101 (139)
|+++|.++.-..
T Consensus 255 l~~~G~iv~~G~ 266 (348)
T 3two_A 255 LTYNGDLALVGL 266 (348)
T ss_dssp EEEEEEEEECCC
T ss_pred HhcCCEEEEECC
Confidence 999999997543
No 485
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=75.97 E-value=17 Score=25.06 Aligned_cols=64 Identities=8% Similarity=-0.047 Sum_probs=45.4
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
+|..||-++......+..++..|+. +. ...+..+.+..+. .. .+|+|+ -+.. +..++++.+...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~-----~~---~~dlvi-lp~~-~g~~~~~~lr~~ 65 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFM--AD-VTESLEDGEYLMD-----IR---NYDLVM-VSDK-NALSFVSRIKEK 65 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCC--EE-EESSHHHHHHHHT-----TS---CCSEEE-ECCT-THHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcE--EE-EECCHHHHHHHHh-----cC---CCCEEE-eCCC-CHHHHHHHHHhC
Confidence 5788999999999999999887763 54 6778888776553 35 799999 3332 334556666555
No 486
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=75.83 E-value=1.4 Score=33.92 Aligned_cols=47 Identities=6% Similarity=-0.101 Sum_probs=34.9
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
.|.++|+++.+++..+.|+.... ++|+.++.... -. .+|+|+.+++.
T Consensus 35 ~v~~~e~d~~a~~t~~~N~~~~~--------~~Di~~~~~~~------~~---~~D~l~~gpPC 81 (327)
T 2c7p_A 35 CVYSNEWDKYAQEVYEMNFGEKP--------EGDITQVNEKT------IP---DHDILCAGFPC 81 (327)
T ss_dssp EEEEECCCHHHHHHHHHHHSCCC--------BSCGGGSCGGG------SC---CCSEEEEECCC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCC--------cCCHHHcCHhh------CC---CCCEEEECCCC
Confidence 47899999999999999974321 68887763321 24 69999998754
No 487
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*
Probab=75.71 E-value=8.6 Score=29.00 Aligned_cols=73 Identities=10% Similarity=-0.052 Sum_probs=45.4
Q ss_pred cceeEEeCCcc-----HHHHHHHHHHHc----C--CCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchH
Q 044253 12 YFIVAIDVSRE-----SSETGLPIIKKV----E--VDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYR 80 (139)
Q Consensus 12 ~~v~~vD~s~~-----~~~~Ar~n~~~~----g--~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~ 80 (139)
.+|+.+|++++ ..+..++.-... + +..++.. ..|..+.+ . ..|+||+-.+.....
T Consensus 39 ~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~---~aD~Vilav~~~~~~ 104 (354)
T 1x0v_A 39 PRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-VPDVVQAA----------E---DADILIFVVPHQFIG 104 (354)
T ss_dssp EEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE-ESSHHHHH----------T---TCSEEEECCCGGGHH
T ss_pred CeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE-EcCHHHHH----------c---CCCEEEEeCCHHHHH
Confidence 78999999998 666554321000 1 1123332 23433321 3 689999987655667
Q ss_pred HHHHHHhhcccCCeEEEE
Q 044253 81 NYRETLMTLFKVGGIVIY 98 (139)
Q Consensus 81 ~~~~~~~~lL~~gG~ii~ 98 (139)
..++.+.+.++++.+++.
T Consensus 105 ~v~~~i~~~l~~~~ivv~ 122 (354)
T 1x0v_A 105 KICDQLKGHLKANATGIS 122 (354)
T ss_dssp HHHHHHTTCSCTTCEEEE
T ss_pred HHHHHHHhhCCCCCEEEE
Confidence 788888888888876653
No 488
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=75.34 E-value=13 Score=23.42 Aligned_cols=74 Identities=11% Similarity=-0.007 Sum_probs=46.8
Q ss_pred ceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCc--chHHHHHHHhhcc
Q 044253 13 FIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKD--NYRNYRETLMTLF 90 (139)
Q Consensus 13 ~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~~lL 90 (139)
+|..+|-++......+..++.. + .+. ...+..+.+..+. .. .+|+|++|.... +-.++++.+....
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~-~--~v~-~~~~~~~a~~~~~-----~~---~~dlvl~D~~lp~~~g~~~~~~l~~~~ 70 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD-F--DVL-TAQGAEAAIAILE-----EE---WVQVIICDQRMPGRTGVDFLTEVRERW 70 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT-S--CEE-EESSHHHHHHHHH-----HS---CEEEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred eEEEEcCCHHHHHHHHHHhhcC-c--eEE-EcCCHHHHHHHHh-----cC---CCCEEEEeCCCCCCcHHHHHHHHHHhC
Confidence 5888999999999888888653 3 343 5667777766543 35 799999997543 2334555554432
Q ss_pred cCCeEEEE
Q 044253 91 KVGGIVIY 98 (139)
Q Consensus 91 ~~gG~ii~ 98 (139)
..--++++
T Consensus 71 ~~~~ii~~ 78 (139)
T 2jk1_A 71 PETVRIII 78 (139)
T ss_dssp TTSEEEEE
T ss_pred CCCcEEEE
Confidence 22234444
No 489
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=75.27 E-value=22 Score=26.14 Aligned_cols=61 Identities=8% Similarity=-0.036 Sum_probs=40.5
Q ss_pred hhhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcCC
Q 044253 6 ESTFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 6 ~~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
..+..+++|+.++++.+..+.+++..+..+ ++.++.+|+.+. +.+.... .. +.|+++..+.
T Consensus 51 ~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~---~g---~iD~lVnnAG 117 (296)
T 3k31_A 51 AVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEE---WG---SLDFVVHAVA 117 (296)
T ss_dssp HHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHH---HS---CCSEEEECCC
T ss_pred HHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH---cC---CCCEEEECCC
Confidence 345567899999999887777777666655 357788886532 2222211 24 7899998764
No 490
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=74.77 E-value=12 Score=28.42 Aligned_cols=83 Identities=8% Similarity=0.087 Sum_probs=43.7
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEe---CChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHH
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLME---SRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETL 86 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~---~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~ 86 (139)
.+++++++..+++.+...++.++..|...-+.... .+..+.+.++..+ + .. .+|+||--... .... .+
T Consensus 191 ~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~-~-~~---g~Dvvid~~G~---~~~~-~~ 261 (364)
T 1gu7_A 191 LNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQ-S-GG---EAKLALNCVGG---KSST-GI 261 (364)
T ss_dssp HTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHH-H-TC---CEEEEEESSCH---HHHH-HH
T ss_pred CCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhc-c-CC---CceEEEECCCc---hhHH-HH
Confidence 46788888777665332233344567531111111 2333333332100 0 24 79999865432 2223 56
Q ss_pred hhcccCCeEEEEeCC
Q 044253 87 MTLFKVGGIVIYDNT 101 (139)
Q Consensus 87 ~~lL~~gG~ii~~~~ 101 (139)
.+.|+++|.++.-..
T Consensus 262 ~~~l~~~G~~v~~g~ 276 (364)
T 1gu7_A 262 ARKLNNNGLMLTYGG 276 (364)
T ss_dssp HHTSCTTCEEEECCC
T ss_pred HHHhccCCEEEEecC
Confidence 799999999987443
No 491
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=74.47 E-value=8.8 Score=24.05 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=41.1
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCC
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHK 76 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~ 76 (139)
.+.+|..+|-++......+..++..|+ .+ ....+..+.+..+. .. . |+|++|...
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~a~~~~~-----~~---~-dlvllD~~l 60 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGC--EV-TTVSSNEECLRVVS-----HE---H-KVVFMDVCM 60 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEESSHHHHHHHCC-----TT---C-SEEEEECCS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCC--eE-EEeCCHHHHHHHHh-----cc---C-CEEEEeCCC
Confidence 356799999999999999999988776 24 35667777766542 23 5 999999643
No 492
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=73.97 E-value=8.4 Score=28.91 Aligned_cols=63 Identities=8% Similarity=-0.026 Sum_probs=45.0
Q ss_pred hhhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH------HHhhHHhhhcccCCCceeEEEEcCC
Q 044253 7 STFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA------LDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 7 ~~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~------l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
.+..+++|+.++++++.++.+.+.+...+...++.++.+|+.+. +..+... .. +.|+++..+.
T Consensus 28 l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~---~g---~id~lv~nAg 96 (319)
T 3ioy_A 28 LLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR---FG---PVSILCNNAG 96 (319)
T ss_dssp HHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH---TC---CEEEEEECCC
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh---CC---CCCEEEECCC
Confidence 44567899999999999998888887766545799999887642 2222211 24 7899998764
No 493
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=73.55 E-value=21 Score=27.04 Aligned_cols=84 Identities=11% Similarity=-0.027 Sum_probs=56.1
Q ss_pred hcceeEEeCCccHHHHHHHHHHHcCC--CCcEEEEeCChHH-HHHhhHHhhhcccCCCcee-----EEEEcCCC-----c
Q 044253 11 IYFIVAIDVSRESSETGLPIIKKVEV--DLKINLMESRALP-ALDQLLKDEKIHFFFENFD-----YAFVDAHK-----D 77 (139)
Q Consensus 11 ~~~v~~vD~s~~~~~~Ar~n~~~~g~--~~~i~~~~~da~~-~l~~~~~~~~~~~~~~~fD-----~If~D~~~-----~ 77 (139)
+.+++=|| .|+.++..++.+...+. .++.+++.+|..+ ++..+. .. .|| ++++.+-. .
T Consensus 125 ~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~-----~~---g~d~~~Pt~~i~Egvl~Yl~~~ 195 (310)
T 2uyo_A 125 GTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALR-----SA---GFDPSARTAWLAEGLLMYLPAT 195 (310)
T ss_dssp TCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHH-----HT---TCCTTSCEEEEECSCGGGSCHH
T ss_pred CcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHH-----hc---cCCCCCCEEEEEechHhhCCHH
Confidence 35677788 69999999999987653 4678999999875 222221 12 233 44454422 1
Q ss_pred chHHHHHHHhhcccCCeEEEEeCCCC
Q 044253 78 NYRNYRETLMTLFKVGGIVIYDNTLW 103 (139)
Q Consensus 78 ~~~~~~~~~~~lL~~gG~ii~~~~~~ 103 (139)
....++..+...+.+|+.++++.+..
T Consensus 196 ~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 196 AQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred HHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 23456777778888999999987654
No 494
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=73.53 E-value=12 Score=27.31 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=15.1
Q ss_pred hhhhhhhcceeEEeCCccHH
Q 044253 5 LESTFFIYFIVAIDVSRESS 24 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~~~~ 24 (139)
...+..+.+|..||.|+..-
T Consensus 59 ~~la~~G~rVlliD~D~q~~ 78 (298)
T 2oze_A 59 YLTDKLNLKVLMIDKDLQAT 78 (298)
T ss_dssp HHHHHTTCCEEEEEECTTCH
T ss_pred HHHHhCCCeEEEEeCCCCCC
Confidence 34455678999999999853
No 495
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=73.42 E-value=3.7 Score=30.34 Aligned_cols=17 Identities=12% Similarity=-0.050 Sum_probs=13.2
Q ss_pred hhhhhhhcceeEEeCCc
Q 044253 5 LESTFFIYFIVAIDVSR 21 (139)
Q Consensus 5 ~~~~~~~~~v~~vD~s~ 21 (139)
...+..+.+|..||.|+
T Consensus 27 ~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 27 TALLYGGAKVAVIDLDL 43 (286)
T ss_dssp HHHHHTTCCEEEEECCT
T ss_pred HHHHHCCCcEEEEECCC
Confidence 34455678999999999
No 496
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=72.94 E-value=10 Score=30.47 Aligned_cols=27 Identities=7% Similarity=-0.057 Sum_probs=19.7
Q ss_pred CCchhhhhh--hcceeEEeCCccHHHHHH
Q 044253 2 PFNLESTFF--IYFIVAIDVSRESSETGL 28 (139)
Q Consensus 2 ~~~~~~~~~--~~~v~~vD~s~~~~~~Ar 28 (139)
|+|...+.. +.+|+++|++++.++..+
T Consensus 23 ~~A~~La~~g~g~~V~~~D~~~~~v~~l~ 51 (481)
T 2o3j_A 23 PTCAMIAHKCPHITVTVVDMNTAKIAEWN 51 (481)
T ss_dssp HHHHHHHHHCTTSEEEEECSCHHHHHHHT
T ss_pred HHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 344555555 568999999999887765
No 497
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=72.42 E-value=12 Score=28.39 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=45.2
Q ss_pred hhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhc
Q 044253 10 FIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTL 89 (139)
Q Consensus 10 ~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~l 89 (139)
.+++|++++.+++..+.+++ ..|.. .+ +-..+ .+.+.+. .. .+|+||--..... .++.+.+.
T Consensus 203 ~Ga~Vi~~~~~~~~~~~~~~---~lGa~-~v-i~~~~-~~~~~~~------~~---g~D~vid~~g~~~---~~~~~~~~ 264 (357)
T 2cf5_A 203 MGHHVTVISSSNKKREEALQ---DLGAD-DY-VIGSD-QAKMSEL------AD---SLDYVIDTVPVHH---ALEPYLSL 264 (357)
T ss_dssp HTCEEEEEESSTTHHHHHHT---TSCCS-CE-EETTC-HHHHHHS------TT---TEEEEEECCCSCC---CSHHHHTT
T ss_pred CCCeEEEEeCChHHHHHHHH---HcCCc-ee-ecccc-HHHHHHh------cC---CCCEEEECCCChH---HHHHHHHH
Confidence 46789999999998877763 35643 22 22223 2333332 24 7999986544321 24456789
Q ss_pred ccCCeEEEEeC
Q 044253 90 FKVGGIVIYDN 100 (139)
Q Consensus 90 L~~gG~ii~~~ 100 (139)
|+++|.++.-.
T Consensus 265 l~~~G~iv~~G 275 (357)
T 2cf5_A 265 LKLDGKLILMG 275 (357)
T ss_dssp EEEEEEEEECS
T ss_pred hccCCEEEEeC
Confidence 99999998643
No 498
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=74.63 E-value=0.77 Score=28.14 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=47.7
Q ss_pred eCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHhhhcccCCCceeEEEEcCCCcchHHHHHHHhhcccCCeEEE
Q 044253 18 DVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKDEKIHFFFENFDYAFVDAHKDNYRNYRETLMTLFKVGGIVI 97 (139)
Q Consensus 18 D~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~~~~~~~~~~fD~If~D~~~~~~~~~~~~~~~lL~~gG~ii 97 (139)
|+...+-+.||+.+++..-.-.-++-.||+...+..+. . ...-.+-|++......+++.+.++|++.|.++
T Consensus 18 evtdgapdearerieklakdvkdeleegdaknmiekfr------d---emeqmykdapnavmeqlleeiekllkkagslv 88 (101)
T 2lse_A 18 EVTDGAPDEARERIEKLAKDVKDELEEGDAKNMIEKFR------D---EMEQMYKDAPNAVMEQLLEEIEKLLKKAGSLV 88 (101)
Confidence 44555666777777665432234566777777666552 3 34556667765556778888889999999887
Q ss_pred Ee
Q 044253 98 YD 99 (139)
Q Consensus 98 ~~ 99 (139)
-.
T Consensus 89 pr 90 (101)
T 2lse_A 89 PR 90 (101)
Confidence 43
No 499
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=71.93 E-value=15 Score=23.64 Aligned_cols=52 Identities=13% Similarity=-0.008 Sum_probs=35.3
Q ss_pred hhhhcceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHH--HHhhHHhhhcccCCCceeEEEEcCC
Q 044253 8 TFFIYFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPA--LDQLLKDEKIHFFFENFDYAFVDAH 75 (139)
Q Consensus 8 ~~~~~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~--l~~~~~~~~~~~~~~~fD~If~D~~ 75 (139)
...+.+|+.+|.+++.++.+++ .+ +.++.+|..+. +.... -. .+|+|++-.+
T Consensus 26 ~~~g~~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~~-----~~---~~d~vi~~~~ 79 (141)
T 3llv_A 26 TAAGKKVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSLD-----LE---GVSAVLITGS 79 (141)
T ss_dssp HHTTCCEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHSC-----CT---TCSEEEECCS
T ss_pred HHCCCeEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhCC-----cc---cCCEEEEecC
Confidence 3446789999999988776653 23 57788887643 33221 24 7999998765
No 500
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=71.92 E-value=17 Score=23.25 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=46.9
Q ss_pred cceeEEeCCccHHHHHHHHHHHcCCCCcEEEEeCChHHHHHhhHHh--hhcccCCCceeEEEEcCCCc--chHHHHHHHh
Q 044253 12 YFIVAIDVSRESSETGLPIIKKVEVDLKINLMESRALPALDQLLKD--EKIHFFFENFDYAFVDAHKD--NYRNYRETLM 87 (139)
Q Consensus 12 ~~v~~vD~s~~~~~~Ar~n~~~~g~~~~i~~~~~da~~~l~~~~~~--~~~~~~~~~fD~If~D~~~~--~~~~~~~~~~ 87 (139)
.+|..||-++......+..++..|.. .......+..+.+..+... +.... .+|+|++|.... +-.++++.+.
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~~~~~~~~~~---~~dlillD~~lp~~~g~~l~~~l~ 84 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTID-HELIILRDGLAAMAFLQQQGEYENSP---RPNLILLDLNLPKKDGREVLAEIK 84 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSC-EEEEEECSHHHHHHHHTTCGGGTTCC---CCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCC-ccEEEeCCHHHHHHHHHhccccccCC---CCCEEEEeCCCCCCcHHHHHHHHH
Confidence 47899999999999999999887753 1233556777776654210 00003 699999997543 2334555554
Q ss_pred h
Q 044253 88 T 88 (139)
Q Consensus 88 ~ 88 (139)
.
T Consensus 85 ~ 85 (149)
T 1i3c_A 85 Q 85 (149)
T ss_dssp H
T ss_pred h
Confidence 4
Done!