BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044254
         (312 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5JGR9|IF2P_PYRKO Probable translation initiation factor IF-2 OS=Pyrococcus
           kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
           GN=infB PE=3 SV=1
          Length = 1144

 Score = 32.7 bits (73), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 151 MENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVEKGFVRSHRMQRKHYRGLS 210
           +E+ Y+W  + R     GKM      N HS       PF   +G+VR+ +++   Y  ++
Sbjct: 76  LESPYVWKVRHR-----GKMLRVKLKNWHSVSVTPEHPFLTTRGWVRADQLKPGDY--VA 128

Query: 211 NPQCVHGIE 219
            P+ +HG E
Sbjct: 129 VPRVIHGNE 137


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.133    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,859,726
Number of Sequences: 539616
Number of extensions: 5438582
Number of successful extensions: 13697
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13697
Number of HSP's gapped (non-prelim): 5
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)