Query 044254
Match_columns 312
No_of_seqs 25 out of 27
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 22:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qwm_A Iqsec1, IQ motif and SE 27.7 20 0.00068 29.7 1.2 15 226-240 102-116 (140)
2 3u5c_H RP30, RP40, 40S ribosom 26.9 17 0.0006 32.0 0.7 17 236-252 172-188 (190)
3 3ouv_A Serine/threonine protei 26.0 49 0.0017 22.7 2.8 30 217-246 4-33 (71)
4 1wi1_A Calcium-dependent activ 25.1 79 0.0027 25.5 4.2 61 159-245 45-109 (126)
5 1u5d_A SKAP55, SRC kinase-asso 23.5 48 0.0016 22.5 2.3 16 226-241 85-100 (108)
6 1ujo_A Transgelin; CH domain, 21.6 36 0.0012 27.3 1.6 16 231-246 11-27 (144)
7 2d9v_A Pleckstrin homology dom 20.4 51 0.0017 24.4 2.1 25 226-250 94-118 (130)
8 1c2n_A Cytochrome C2; electron 19.9 53 0.0018 25.1 2.1 10 230-239 89-98 (137)
9 1pls_A Pleckstrin homology dom 19.1 69 0.0023 22.5 2.4 20 226-245 81-100 (113)
10 2w9k_A Cytochrome C, cytochrom 18.9 60 0.002 23.3 2.1 10 230-239 71-80 (114)
No 1
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=27.75 E-value=20 Score=29.74 Aligned_cols=15 Identities=7% Similarity=0.355 Sum_probs=12.2
Q ss_pred CCCCCHHHHHhhhhh
Q 044254 226 LKGIDEEEQKRWMEL 240 (312)
Q Consensus 226 L~~~~e~d~kRW~EL 240 (312)
|..-+++||+||++-
T Consensus 102 ~~A~s~~ER~rwi~d 116 (140)
T 3qwm_A 102 FNAPNPQDRKKFTDD 116 (140)
T ss_dssp EECSSHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHH
Confidence 456689999999973
No 2
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=26.88 E-value=17 Score=32.03 Aligned_cols=17 Identities=35% Similarity=0.790 Sum_probs=13.9
Q ss_pred hhhhhccccccccCCCC
Q 044254 236 RWMELTGRDLNFSVPPE 252 (312)
Q Consensus 236 RW~ELTGRd~nFsiP~e 252 (312)
-...|||+|++|.+|.+
T Consensus 172 VYkkLTgkdv~FeFp~~ 188 (190)
T 3u5c_H 172 VYNKLTGKQIVFEIPSE 188 (190)
T ss_dssp HHHHHHSCEEEEECCC-
T ss_pred HHHHhhCCcEEEEecCc
Confidence 35679999999999965
No 3
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=26.04 E-value=49 Score=22.66 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=24.0
Q ss_pred ceeEeeCCCCCCCCHHHHHhhhhhcccccc
Q 044254 217 GIEVVSSPNLKGIDEEEQKRWMELTGRDLN 246 (312)
Q Consensus 217 GIEvV~sPnL~~~~e~d~kRW~ELTGRd~n 246 (312)
|-+-|.-|||.+++.+|-+.+.+-.|-.+.
T Consensus 4 G~~~v~VPdv~G~~~~~A~~~L~~~Gl~~~ 33 (71)
T 3ouv_A 4 GPATKDIPDVAGQTVDVAQKNMNVYGFTKF 33 (71)
T ss_dssp -CCEEECCCCTTCBHHHHHHHHHHTTCCCE
T ss_pred CCCceECCCcCCCCHHHHHHHHHHCCCeEE
Confidence 556788899999999999999887775544
No 4
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.11 E-value=79 Score=25.52 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=38.8
Q ss_pred eecCcccccccchhhhccc----CCCCCCCCCCCccccccchhhhhhhhhhccCCCCCccccceeEeeCCCCCCCCHHHH
Q 044254 159 FKERPENALGKMQLRSYMN----GHSRQGERPFPFSVEKGFVRSHRMQRKHYRGLSNPQCVHGIEVVSSPNLKGIDEEEQ 234 (312)
Q Consensus 159 FKerPeNALGKMQLRSyMN----GHSR~GE~~FPFS~dkGFvRSHRMQRKHYRGLSNPQCvHGIEvV~sPnL~~~~e~d~ 234 (312)
|++.=+.++|-++|.+|-- -++..-.+.|=|.+.. +|-..+ |+.=+|+|+
T Consensus 45 ~~~~~~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~----------------------~~~ty~----~~Adseee~ 98 (126)
T 1wi1_A 45 YREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVK----------------------EGDTVI----FASDDEQDR 98 (126)
T ss_dssp CCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEEC----------------------SSCEEE----EECSSHHHH
T ss_pred ccccCCCCceEEECCCcEEEEecCCcccccCceEEEEec----------------------CCceEE----EEcCCHHHH
Confidence 3466668999999999742 2332223556666432 111212 667789999
Q ss_pred Hhhhhhccccc
Q 044254 235 KRWMELTGRDL 245 (312)
Q Consensus 235 kRW~ELTGRd~ 245 (312)
..||....|-+
T Consensus 99 ~~WikAi~~A~ 109 (126)
T 1wi1_A 99 ILWVQAMYRAT 109 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999877644
No 5
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=23.52 E-value=48 Score=22.53 Aligned_cols=16 Identities=13% Similarity=0.503 Sum_probs=13.1
Q ss_pred CCCCCHHHHHhhhhhc
Q 044254 226 LKGIDEEEQKRWMELT 241 (312)
Q Consensus 226 L~~~~e~d~kRW~ELT 241 (312)
|..-+++|+..|++..
T Consensus 85 l~a~s~~e~~~Wi~ai 100 (108)
T 1u5d_A 85 FTATSPAEARDWVDQI 100 (108)
T ss_dssp EECSSHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHH
Confidence 5667899999999754
No 6
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=21.60 E-value=36 Score=27.33 Aligned_cols=16 Identities=31% Similarity=0.626 Sum_probs=13.1
Q ss_pred HHHHHhhhh-hcccccc
Q 044254 231 EEEQKRWME-LTGRDLN 246 (312)
Q Consensus 231 e~d~kRW~E-LTGRd~n 246 (312)
|+|.+.|+| ++|.++.
T Consensus 11 e~e~~~WIe~~l~~~l~ 27 (144)
T 1ujo_A 11 EERLVEWIVVQCGPDVG 27 (144)
T ss_dssp HHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 678999999 6888765
No 7
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.45 E-value=51 Score=24.45 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=18.3
Q ss_pred CCCCCHHHHHhhhhhccccccccCC
Q 044254 226 LKGIDEEEQKRWMELTGRDLNFSVP 250 (312)
Q Consensus 226 L~~~~e~d~kRW~ELTGRd~nFsiP 250 (312)
|..=+++|+++|++..-.-+.-+++
T Consensus 94 l~A~s~~e~~~Wi~al~~a~~~~~~ 118 (130)
T 2d9v_A 94 LCAETRDDAIAWKTALMEANSTPAP 118 (130)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCCCC
T ss_pred EEcCCHHHHHHHHHHHHHHHcCCCC
Confidence 6677999999999987655544333
No 8
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=19.90 E-value=53 Score=25.07 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=6.8
Q ss_pred CHHHHHhhhh
Q 044254 230 DEEEQKRWME 239 (312)
Q Consensus 230 ~e~d~kRW~E 239 (312)
++++.++|+.
T Consensus 89 ~~~~l~~~i~ 98 (137)
T 1c2n_A 89 TEEDIATYVK 98 (137)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHHh
Confidence 4677777765
No 9
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=19.11 E-value=69 Score=22.45 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=15.5
Q ss_pred CCCCCHHHHHhhhhhccccc
Q 044254 226 LKGIDEEEQKRWMELTGRDL 245 (312)
Q Consensus 226 L~~~~e~d~kRW~ELTGRd~ 245 (312)
|..-+++|+++|++..-+-+
T Consensus 81 l~a~s~~e~~~Wi~ai~~~~ 100 (113)
T 1pls_A 81 FQAAFLEERDAWVRDINKAI 100 (113)
T ss_dssp EECSSHHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHH
Confidence 66778999999998765433
No 10
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=18.88 E-value=60 Score=23.25 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=7.4
Q ss_pred CHHHHHhhhh
Q 044254 230 DEEEQKRWME 239 (312)
Q Consensus 230 ~e~d~kRW~E 239 (312)
+++...+|+.
T Consensus 71 ~~~~l~~~i~ 80 (114)
T 2w9k_A 71 TPDVLDVYLE 80 (114)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6777788875
Done!